RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8640
(303 letters)
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 54.3 bits (129), Expect = 4e-10
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 115 NDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDS 174
NDN P+F + V E G+ V T A D D + ++ S
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNAL---NGMLRYRIVSQAPSTPS 57
Query: 175 WKLFRVDA-LTGLVTTNAVFDYEARSRYAFTLLST 208
+F ++ ++T A D E +Y + +T
Sbjct: 58 PNMFTINNETGDIITVAAGLDREKVQQYTLIIQAT 92
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 50.8 bits (120), Expect = 6e-09
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 114 ENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDD 173
+NDN PKF + V E G+ V ATD D ++S + +
Sbjct: 1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS--LNGVLSYSILKQDPEEP 58
Query: 174 SWKLFRVDALTGLVT-TNAVFDYEARSRYAFTLLST 208
LF ++ TG+++ D E Y T+ +T
Sbjct: 59 IPNLFTINRETGVISLIGTGLDREKFPEYTLTVQAT 94
Score = 27.7 bits (60), Expect = 0.85
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 67 VLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQD 113
+ + LD + + L ++ D LS I + D
Sbjct: 72 ISLIGTGLDREKFPE-YTLTVQATDLEGA----GLSVEGKAIIQITD 113
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 48.4 bits (114), Expect = 4e-08
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 116 DNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSW 175
+ AP F V E+ G + + A D DK KL+Y I + D
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN----------DPA 50
Query: 176 KLFRVDALTGLVTTNAVFDYEA 197
+ V+ G+VT N D E+
Sbjct: 51 RWLTVNKDNGIVTGNGNLDRES 72
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 45.1 bits (106), Expect = 5e-07
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
ENE G +K GK+ YSI A +F ++ TG +
Sbjct: 11 SCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADT-----PPVGVFIIERETGWLK 64
Query: 189 TNAVFDYEARSRYAFTLLST 208
D E + Y +
Sbjct: 65 VTEPLDRERIATYTLFSHAV 84
Score = 29.7 bits (66), Expect = 0.13
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQDE 114
++ TG L V +PLD + ++ L + + IT+ D+
Sbjct: 55 IIERETGWLKVTEPLDRERIATYTLFS-HAVSSNGNAV----EDPMEILITVTDQ 104
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 44.7 bits (104), Expect = 8e-07
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 115 NDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDS 174
NDN P+F + V E G+SV ATD D N +I S ++
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTY-NAAIAYTIVSQDPELPHK 59
Query: 175 WKLFRVDALTGLVTTNAVFDYEARSRYAFTLLST 208
+ + D E+ Y + +
Sbjct: 60 NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAA 93
Score = 28.5 bits (62), Expect = 0.44
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 61 VDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQD 113
V+ TGV+SV + L+++ D LS+ IT++D
Sbjct: 64 VNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE----GLSTTAKAVITVKD 112
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 43.1 bits (100), Expect = 3e-06
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 115 NDNAPKFPITEYLEFVGENEPIGSSVFTARATD-MDKGDYGKLNYSIISAAASGYTDVDD 173
NDNAP F Y V EN IG V TD G I G+ ++
Sbjct: 2 NDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT- 59
Query: 174 SWKLFRVDALTGLVTTNAVFDYEARSRYAFTLLST 208
++ G++TT D+E R +Y +
Sbjct: 60 ----TDPESNQGILTTAKGLDFELRKQYVLQITVE 90
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 42.8 bits (100), Expect = 3e-06
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
V ENE G +K + K+ YSI A +FR++ TG +
Sbjct: 8 KVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQ-----GVFRIEWETGWML 61
Query: 189 TNAVFDYEARSRYAFTLLST 208
D E +Y + +
Sbjct: 62 VTRPLDREEYDKYVLSSHAV 81
Score = 27.4 bits (60), Expect = 0.75
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 60 AVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQD 113
++ TG + V +PLD + L P+ + I + D
Sbjct: 52 RIEWETGWMLVTRPLDREEYDKYVLSS-HAVSENGS----PVEEPMEITINVID 100
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 41.4 bits (96), Expect = 1e-05
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 129 FVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDSWKLFRVDALTGLVT 188
+ EN G + L YS+ A +F ++ ++G ++
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQ-----PPTGIFIINPISGQLS 63
Query: 189 TNAVFDYEARSRYAFTLLST 208
D E +R+ +
Sbjct: 64 VTKPLDRELIARFHLRAHAV 83
Score = 27.1 bits (59), Expect = 1.2
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 58 IQAVDPLTGVLSVQQPLDYDTGSSEHLLILKVEDGGKPPLDSPLSSITHLKITLQD 113
I ++P++G LSV +PLD + + HL D + + + I + D
Sbjct: 52 IFIINPISGQLSVTKPLDRELIARFHLRA-HAVDINGNQ----VENPIDIVINVID 102
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 41.5 bits (96), Expect = 2e-05
Identities = 4/41 (9%), Positives = 14/41 (34%)
Query: 113 DENDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDY 153
+ FP Y + ++ G + + ++ ++
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRK 45
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 35.4 bits (80), Expect = 0.002
Identities = 12/97 (12%), Positives = 24/97 (24%), Gaps = 3/97 (3%)
Query: 115 NDNAPKFPITEYLEFVGENEPIGSSVFTARATDMDKGDYGKLNYSIISAAASGYTDVDDS 174
NDN P + + + P V T D+ Y + + ++D
Sbjct: 1 NDNGPVPSPRVF--TMCDQNPEP-QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSK 57
Query: 175 WKLFRVDALTGLVTTNAVFDYEARSRYAFTLLSTYSV 211
+ L + L+ +
Sbjct: 58 GTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA 94
>d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR
{Burkholderia sp. [TaxId: 36773]}
Length = 219
Score = 25.9 bits (55), Expect = 5.7
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 265 SRDEFHPQFTERTFKFILSGTDLPVGYVVGHLRLVRFR 302
+R+ F P + RTF L+ TD+ Y + L +
Sbjct: 1 TRNSFDPFASTRTFN--LAMTDIGEMYFMPPL-MEALA 35
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex
p62 subunit (BTF2-p62), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 108
Score = 24.8 bits (54), Expect = 7.1
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 85 LILKVEDGGKPPLDSPLSSITHLKITLQDENDNAPK 120
+ E + + + I KI+ + K
Sbjct: 31 IAWAPEGKDRFTISHMYADIKCQKIS----PEGKAK 62
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
phenylalanine-repressible {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 462
Score = 26.0 bits (57), Expect = 7.5
Identities = 5/33 (15%), Positives = 10/33 (30%), Gaps = 7/33 (21%)
Query: 264 ESRDEFHPQFTERTFKFILS-------GTDLPV 289
E+ + + +L G +PV
Sbjct: 89 ETFMDNTEPHIRGNVRALLQMAVVLTYGASMPV 121
>d1lsha2 f.7.1.1 (A:17-284) Lipovitellin-phosvitin complex;
beta-sheet shell regions {Lamprey (Ichthyomyzon
unicuspis) [TaxId: 30308]}
Length = 268
Score = 25.8 bits (56), Expect = 7.6
Identities = 7/48 (14%), Positives = 20/48 (41%)
Query: 232 VFDYEARSRYAFTLLSTDSGGRTCKVKVRVEIESRDEFHPQFTERTFK 279
+ Y+A S + G + ++K+ + + ++ + T+ K
Sbjct: 9 RYSYDAFSISGLPEPGVNRAGLSGEMKIEIHGHTHNQATLKITQVNLK 56
>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
{Zymomonas mobilis [TaxId: 542]}
Length = 372
Score = 26.0 bits (56), Expect = 7.7
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 238 RSRYAFTLLSTDSGGRTCKVKV-RVEIE 264
R R++F++ + + RT +++ R I
Sbjct: 1 RPRFSFSIAAREGKARTGTIEMKRGVIR 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,109,423
Number of extensions: 49892
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 22
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)