BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8644
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3
Length = 3503
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Query: 63 RALRTEEH---WLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
R L E+H L+++ + P G CN TI VEDQNDN P F +S+Y+ S+ ED
Sbjct: 1854 RPLDREQHSRYTLQIQASDR--GQPKSRQGHCNITIFVEDQNDNAPRFKLSKYTGSVQED 1911
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWN 145
P+GT V +SA DADLGVN++L ++
Sbjct: 1912 APLGTSVVQISAVDADLGVNARLVYS 1937
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
PL T + + D NDN PIF S Y++S+ E+ PVG + VSASD D GVN+ +++
Sbjct: 537 PLSSTATVLVTIHDVNDNEPIFDQSFYNVSVAENEPVGRCILKVSASDPDCGVNAMVNY 595
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 81 GSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
G P PL G I ++D NDN PIF S+Y ++PE+ VGT V V ASD D N
Sbjct: 208 GGTP-PLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGTSVLQVYASDTDADENG 266
Query: 141 KLSW----NELEPNGLFSSDLRVEWV-INRSVDQHTNK 173
+ + + + +F D R + IN+++D T +
Sbjct: 267 LVEYAINRRQSDKEQMFRIDPRTGAIYINKALDFETKE 304
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 91 CNTTIIVE--DQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELE 148
T +IV D NDN+P F S+Y I E++ G+VV VV+ASD DLG N+ + ++ L
Sbjct: 1082 AKTRVIVRVLDANDNDPKFQKSKYEFRIEENLRRGSVVGVVTASDLDLGENAAIRYSLLP 1141
Query: 149 PNGLF 153
N F
Sbjct: 1142 INSSF 1146
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
P+ G I VED NDN P F S +S+PE +G + A D D G + +++++
Sbjct: 857 PVYGHTQVNIEVEDVNDNAPEFEASMVRISVPESAELGAPLYAAHAHDKDSGSSGQVTYS 916
Query: 146 ELEPN--GLFSSDLRVEWVI 163
++ + GLF+ D R +I
Sbjct: 917 LVKESGKGLFAIDARSGHLI 936
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 61 LKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDV 120
L R +++E L++ SN P I V D NDN P +P L + E
Sbjct: 1388 LDREVQSE-FRLEIRALDTTASN-NPQSSAITVKIEVADVNDNAPEWPQDPIDLQVSEAT 1445
Query: 121 PVGTVVQVVSASDADLGVNSKLSW 144
PVGT++ +A+DAD G N L +
Sbjct: 1446 PVGTIIHNFTATDADTGTNGDLQY 1469
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 87 LVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNE 146
L I +ED+NDN+P F Q+ ++ E GT V V A D+D G N++L ++
Sbjct: 2249 LASYAELVIELEDENDNSPKFSQKQFVATVSEGNNKGTFVAQVHAFDSDAGSNARLRYHI 2308
Query: 147 LEPNG--------LFSSDLRVEWVINRSV 167
++ N FS +R V++R +
Sbjct: 2309 VDGNHDNAFVIEPAFSGIVRTNIVLDREI 2337
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 45 KFIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNN 104
+F + + L VG L R L+ +++ + G T I V D NDN
Sbjct: 1945 QFAIDGQSGLITTVGKLDRELQASYNFMVLAT---DGGRYEVRSATVPVQINVLDINDNR 2001
Query: 105 PIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRV 159
PIF Y +P + G + V A DADLG N+++ ++ N S+ R+
Sbjct: 2002 PIFERYPYIGQVPALIQPGQTLLKVQALDADLGANAEIVYSLNAENSAVSAKFRI 2056
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 90 TCNTTIIV--EDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNEL 147
+ N TI+V +D NDN P+F +YS+++ E + + V+ASD D G N+++++ +
Sbjct: 964 STNLTILVDVQDVNDNPPVFEKDEYSVNVSESRSINAQIIQVNASDLDTGNNARITYRIV 1023
Query: 148 EP------NGLFSSDLRVEWVI 163
+ N + SSD+ + I
Sbjct: 1024 DAGVDNVTNSISSSDVSQHFGI 1045
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
PL + + D+NDN P FP+++Y + E+ PVG+ V ASD D G +L+++
Sbjct: 2788 PLCSLQPFRLELHDENDNEPKFPLTEYVHFLAENEPVGSSVFRAHASDLDKGPFGQLNYS 2847
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 95 IIVEDQNDNNPIF-PVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
I V D NDN+P F P S Y LS+PE+ G V+ V ASD D G N+ L ++
Sbjct: 1782 ITVGDVNDNSPEFRPGSCYGLSVPENSEPG-VIHTVVASDLDEGPNADLIYS 1832
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 105 PIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN--ELEPNGLFS 154
PIF ++Y+ + ED+P GTVV V A+ D+ S + ++ +P+G FS
Sbjct: 772 PIFEKARYNYYVKEDIPRGTVVGSVIAASGDVAHRSPVRYSIYSGDPDGYFS 823
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 84 PGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLS 143
P P + N +IV+ ++N P F + Y +I E+VP G+ V V+A N+ LS
Sbjct: 1643 PEPKKSSLNLHLIVQGSHNNPPRFLQAVYRATILENVPSGSFVLQVTAKSLHGAENANLS 1702
Query: 144 WNELEPNGLFSSDLRVEW 161
+ E+ P G+ + V+W
Sbjct: 1703 Y-EI-PAGVANDLFHVDW 1718
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 86 PLVG-TCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADL 136
PL G + V+D+NDN P FP + + PE+ P ++ A D DL
Sbjct: 99 PLSGRNIRVLVTVKDENDNAPTFPQTSMHIEFPENTPREVKRTLLPARDLDL 150
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 87 LVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
+ GT + + D NDN P FP + +++ E +G V+ +SA+D D
Sbjct: 2355 MTGTATIRVQIVDVNDNQPTFPPNNL-VTVSEATELGAVITSISANDVD 2402
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
PL + + + + D NDN P F Y ++ E GT V V A D D G+NS L+++
Sbjct: 430 PLHASKSIFLRITDVNDNPPEFEQDLYHANVMEVADPGTSVLQVLAHDRDEGLNSALTYS 489
Query: 146 ELE 148
E
Sbjct: 490 LAE 492
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 95 IIVEDQNDNNP-IFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN-----ELE 148
I V D NDN P I + +S+ E+ P GT V V A D D G N+ ++++ + +
Sbjct: 1191 IHVSDVNDNAPEIADPQEDVVSVREEQPPGTEVVRVRAVDRDHGQNASITYSIVKGRDSD 1250
Query: 149 PNGLFSSDLRVEWVINRSVDQHTNK 173
+GLFS D + R V H +
Sbjct: 1251 GHGLFSIDPTSGVIRTRVVLDHEER 1275
>sp|Q8BM92|CADH7_MOUSE Cadherin-7 OS=Mus musculus GN=Cdh7 PE=2 SV=1
Length = 785
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 59 GTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
G +K AL ++ +L V K G L GT + T+ + D NDN P FP Y
Sbjct: 209 GVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQ 268
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGL 152
++PE +PV +VV + A+DAD+GVN+++ + ++ +GL
Sbjct: 269 YNVPESLPVASVVARIKAADADIGVNAEMEYKIVDGDGL 307
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 57 NVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSI 116
++ KR R E+ + + P+ I ++D NDN P F Y+ +
Sbjct: 103 DIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGV 162
Query: 117 PEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFS 154
PE PVGT V V+A+DAD G ++++ ++ L+ FS
Sbjct: 163 PEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFS 203
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 41 FSIAKFIANPTTRLYKNVGTLKRALRTE---EHWLKVENTKHKGSNP-----GPLVGTCN 92
I K A+ T+ + + T+++ L E + L++E ++ ++P GP T
Sbjct: 307 LGIFKISADKDTQ--EGIITIQKELDFEAKTSYTLRIE-AANRDADPRFLSLGPFSDTTT 363
Query: 93 TTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
IIVED D P+F Y + + E VG ++ V+A D D
Sbjct: 364 VKIIVEDV-DEPPVFSSPLYPMEVSEATQVGHIIGTVAAHDPD 405
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 88 VGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
VG I + D NDN P F + Y ++ E+ G V+Q +SA D D
Sbjct: 463 VGRGYVAITILDINDNAPEFAMD-YETTVCENAQPGQVIQKISAVDKD 509
>sp|Q9ULB5|CADH7_HUMAN Cadherin-7 OS=Homo sapiens GN=CDH7 PE=2 SV=2
Length = 785
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 59 GTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
G +K AL ++ +L V K G L GT + T+ + D NDN P FP Y
Sbjct: 209 GVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQ 268
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVEWVINRSVDQHTNK 173
++PE +PV +VV + A+DAD+G N+++ + ++ +GL + SVD+ T +
Sbjct: 269 YNVPESLPVASVVARIKAADADIGANAEMEYKIVDGDGL--------GIFKISVDKETQE 320
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 57 NVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSI 116
++ KR R E+ + + P+ I ++D NDN P F Y+ +
Sbjct: 103 DIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGV 162
Query: 117 PEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFS 154
PE PVGT V V+A+DAD G ++++ ++ L+ FS
Sbjct: 163 PEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFS 203
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 60 TLKRALRTE---EHWLKVENTKHKGSNP-----GPLVGTCNTTIIVEDQNDNNPIFPVSQ 111
T+++ L E + L++E +K ++P GP T IIVED D P+F
Sbjct: 324 TIQKELDFEAKTSYTLRIE-AANKDADPRFLSLGPFSDTTTVKIIVEDV-DEPPVFSSPL 381
Query: 112 YSLSIPEDVPVGTVVQVVSASDAD 135
Y + + E VG ++ V+A D D
Sbjct: 382 YPMEVSEATQVGNIIGTVAAHDPD 405
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 88 VGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
VG I + D NDN P F + Y ++ E+ G V+Q +SA D D
Sbjct: 463 VGRGYVAITILDINDNAPEFAMD-YETTVCENAQPGQVIQKISAVDKD 509
>sp|Q5DWV2|CADH7_RAT Cadherin-7 OS=Rattus norvegicus GN=Cdh7 PE=2 SV=1
Length = 785
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 59 GTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
G +K AL ++ +L V K G L GT + T+ + D NDN P FP Y
Sbjct: 209 GVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQ 268
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGL 152
+ PE +PV +VV + A+DAD+GVN+++ + ++ +GL
Sbjct: 269 YNGPESLPVASVVARIKAADADIGVNAEMEYKIVDGDGL 307
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 57 NVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSI 116
++ KR R E+ + + P+ I ++D NDN P F Y+ +
Sbjct: 103 DIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGV 162
Query: 117 PEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFS 154
PE PVGT V V+A+DAD G ++++ ++ L+ FS
Sbjct: 163 PEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFS 203
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 46 FIANPTTRLYKNVGTLKRALRTE---EHWLKVENTKHKGSNP-----GPLVGTCNTTIIV 97
F +P + + T+++ L E + L++E ++ ++P GP T IIV
Sbjct: 310 FKISPDKDTQEGIITIQKELDFEAKTSYTLRIE-AANRDADPRFLSLGPFSDTTTVKIIV 368
Query: 98 EDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
ED D P+F Y + + E VG ++ V+A D D
Sbjct: 369 EDV-DEPPVFSSPLYPMEVSEATQVGHIIGTVAAHDPD 405
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 88 VGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
VG I + D NDN P F + Y ++ E+ G V+Q +SA D D
Sbjct: 463 VGRGYVAITILDINDNAPEFAMD-YETTVCENAQPGQVIQKISAIDKD 509
>sp|Q9H159|CAD19_HUMAN Cadherin-19 OS=Homo sapiens GN=CDH19 PE=2 SV=1
Length = 772
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
F PTT + + + R L+ +E+W+ ++ G PG L GT + I + D NDN P
Sbjct: 197 FSVEPTTGVIRISSKMDRELQ-DEYWVIIQAKDMIG-QPGALSGTTSVLIKLSDVNDNKP 254
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
IF S Y L++ E P GT + + A D D+G N+++ ++
Sbjct: 255 IFKESLYRLTVSESAPTGTSIGTIMAYDNDIGENAEMDYS 294
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNG 151
I V D NDN P F Y +PE P GT+V V+ASDAD G N++L ++ L+
Sbjct: 136 IKVSDINDNEPKFLDEPYEAIVPEMSPEGTLVIQVTASDADDPSSGNNARLLYSLLQGQP 195
Query: 152 LFS 154
FS
Sbjct: 196 YFS 198
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
I VED D P+F + Y + E+ P G+ V VVSA+D D
Sbjct: 359 IQVEDV-DEPPLFLLPYYVFEVFEETPQGSFVGVVSATDPD 398
>sp|O35161|CELR1_MOUSE Cadherin EGF LAG seven-pass G-type receptor 1 OS=Mus musculus
GN=Celsr1 PE=2 SV=3
Length = 3034
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 69 EHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQV 128
E+ L VE +G NPGPL + I+VED+NDN P F +Y + +PEDV V T V
Sbjct: 437 EYQLLVE-ANDQGRNPGPLSASATVHIVVEDENDNYPQFSEKRYVVQVPEDVAVNTAVLR 495
Query: 129 VSASDADLGVNSKLSWNELEPN 150
V A+D D G N+ + ++ + N
Sbjct: 496 VQATDRDQGQNAAIHYSIVSGN 517
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 90 TCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEP 149
T I V D N + P+F S Y++S+ ED PVGT + +SA+D D G N+++++ +P
Sbjct: 787 TAQVFINVTDANTHRPVFQSSHYTVSVSEDRPVGTSIATISATDEDTGENARITYVLEDP 846
Query: 150 NGLFSSD 156
F D
Sbjct: 847 VPQFRID 853
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 83 NPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKL 142
+P PL + + V D NDN P+F + L + E+ PVG+VV + A+D D G N+++
Sbjct: 990 SPNPLSASVGIQVSVLDINDNPPVFEKDELELFVEENSPVGSVVARIRANDPDEGPNAQI 1049
Query: 143 SWNELEPN-------GLFSSDLRV 159
+ +E N L S DLR
Sbjct: 1050 MYQIVEGNVPEVFQLDLLSGDLRA 1073
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
F+ + T +L R + + H LKV H +P T T+ V D ND++P
Sbjct: 311 FLIDAATGAVTTARSLDRETK-DTHVLKVSAVDH--GSPRRSAAT-YLTVTVSDTNDHSP 366
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELE-PNGLFSSDLRVEWVIN 164
+F S+Y I E++ VG V + A+D D N+ + + LE G+F D R V
Sbjct: 367 VFEQSEYRERIRENLEVGYEVLTIRATDGDAPSNANMRYRLLEGAGGVFEIDARSGVVRT 426
Query: 165 RSV 167
R+V
Sbjct: 427 RAV 429
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 69 EHWLKVENTKHKGSNPGPLVGTCN-TTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQ 127
E+ L+++ G P PL+ + ++ V D NDN PIF S + ++ E+VP+G V
Sbjct: 544 EYTLRIK--AQDGGRP-PLINSSGLVSVQVLDVNDNAPIFVSSPFQAAVLENVPLGHSVL 600
Query: 128 VVSASDADLGVNSKLSW 144
+ A DAD G N++L +
Sbjct: 601 HIQAVDADAGENARLQY 617
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 104 NPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN-----ELEPNGLFSSDLR 158
+P FP+ Y +S+PE+ P GT V + A D D G +LS+ + NG F D
Sbjct: 257 SPQFPLPSYQVSVPENEPAGTAVIELRAHDPDEGDAGRLSYQMEALFDERSNGYFLIDAA 316
Query: 159 VEWVIN-RSVDQHT 171
V RS+D+ T
Sbjct: 317 TGAVTTARSLDRET 330
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%)
Query: 90 TCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
T + I++ D NDN P F Y S+ ED P T V VSA+D D G N +L +
Sbjct: 890 TTSLEILILDANDNAPRFLRDFYQGSVFEDAPPSTSVLQVSATDRDSGPNGRLLY 944
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 68 EEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQ 127
E + VE H +P + + + +I V D NDN+P+F Y L + ED VG+ V
Sbjct: 666 EHYSFGVEAVDH--GSPA-MSSSASVSITVLDVNDNDPMFTQPVYELRLNEDAAVGSSVL 722
Query: 128 VVSASDADLGVNSKLSWN 145
+ A D D NS +++
Sbjct: 723 TLRARDRD--ANSVITYQ 738
>sp|Q9NRJ7|PCDBG_HUMAN Protocadherin beta-16 OS=Homo sapiens GN=PCDHB16 PE=1 SV=3
Length = 776
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 53 RLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQY 112
R Y + K R EE L++ T G +P P GT I V D NDN P F Y
Sbjct: 189 RKYPELVLDKELDREEEPQLRLTLTALDGGSP-PRSGTAQVRIEVVDINDNAPEFEQPIY 247
Query: 113 SLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRV 159
+ IPE+ P+G++V VSA D D G N K+S+ +P+ S L V
Sbjct: 248 KVQIPENSPLGSLVATVSARDLDGGANGKISYTLFQPSEDISKTLEV 294
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 80 KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVN 139
K ++ G L G C + V D NDN P +S + IPE+ P VV V S SD D G N
Sbjct: 320 KATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALTSPIPENSP-EIVVAVFSVSDPDSGNN 378
Query: 140 SK 141
K
Sbjct: 379 GK 380
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 92 NTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPN 150
N T+ + D NDN P F + Y+L + E+ + VSA+D D G N++++++ L P
Sbjct: 436 NITVQISDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQ 494
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVN 139
V D ND++P+F + L IPE+ P+GT + A D D+G N
Sbjct: 123 VIDINDHSPMFTEKEMILKIPENSPLGTEFPLNHALDLDVGSN 165
>sp|Q90763|CADH7_CHICK Cadherin-7 OS=Gallus gallus GN=CDH7 PE=2 SV=1
Length = 785
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 59 GTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
G +K AL ++ +L V K G L GT + T+ + D NDN P FP Y
Sbjct: 209 GIIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQ 268
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVEWVINRSVDQHTNK 173
++PE +P+ +VV + A+DAD+G N+++ + ++ +GL V SVD+ T +
Sbjct: 269 YNVPESLPLASVVARIKAADADVGPNAEMEYKIVDGDGL--------GVFKISVDKDTQE 320
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 57 NVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSI 116
++ KR R E+ + + H P+ I ++D NDN P F Y+ +
Sbjct: 103 DIHATKRLDREEQAYYTLRAQAHDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGV 162
Query: 117 PEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFS 154
PE PVGT V V+A+DAD G ++++ ++ L+ FS
Sbjct: 163 PEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFS 203
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 85 GPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
GP IIVED D P+F YS+ + E VGT++ V+A D D
Sbjct: 356 GPFSDMTTVKIIVEDV-DEPPVFTSRLYSMVVSEAAKVGTIIGTVAAHDPD 405
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 88 VGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
+G I + D NDN P F + +Y ++ E+ G ++Q +SA D D
Sbjct: 463 IGRGYVAITILDINDNAPEFAM-EYETTVCENAQPGQIIQKISAIDKD 509
>sp|Q3SWX5|CADH6_BOVIN Cadherin-6 OS=Bos taurus GN=CDH6 PE=2 SV=1
Length = 790
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 48 ANPTTRLYKNVGTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQND 102
P + G +K AL E + V K G G L GT I + D ND
Sbjct: 204 GQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVND 263
Query: 103 NNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGL 152
N P FP S Y PE P GT + + ASDAD+G N+++ ++ E GL
Sbjct: 264 NPPRFPQSTYQFKTPESSPPGTPIGRIKASDADVGENAEIEYSITEGEGL 313
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEE--HWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDN 103
FI N T ++ KR R E+ + L+ + K P + I + D NDN
Sbjct: 101 FIINENT---GDIQATKRLDREEKPVYILRAQAINRKTGRP--VEPESEFIIKIHDINDN 155
Query: 104 NPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFS 154
PIF Y+ ++PE VGT V V+A+DAD G ++K+ ++ L+ FS
Sbjct: 156 EPIFTKEVYTATVPEMSDVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFS 209
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNP---------GPLVGTCNTTIIVEDQNDNNPIFPVS 110
T+K+ L E+ KV K + SNP GP + I+VED D P+F
Sbjct: 330 TVKKLLDFEKK--KVYTLKVEASNPHVEPRFLYLGPFKDSATVRIMVEDV-DEPPVFSKL 386
Query: 111 QYSLSIPEDVPVGTVVQVVSASDADLGVN 139
Y L I ED + T + V+A D D N
Sbjct: 387 AYILQIREDAQINTTIGSVTAQDPDAARN 415
>sp|Q5DRB5|PCDG5_PANTR Protocadherin gamma-A5 OS=Pan troglodytes GN=PCDHGA5 PE=3 SV=1
Length = 931
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 77 TKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADL 136
T G +P L GT + + V D NDN P+F S+YS+S+PE++PVGT + +++A+D D
Sbjct: 213 TALDGGDP-VLSGTTHIRVTVLDANDNAPLFTPSEYSVSVPENIPVGTRLLMLTATDPDE 271
Query: 137 GVNSKLSWN 145
G+N KL+++
Sbjct: 272 GINGKLTYS 280
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
PL + + V D NDN P FP + YS S+PE+ P G + V+A D D G N++++++
Sbjct: 431 PLSTESHIPLKVADVNDNPPNFPQASYSTSVPENNPRGVSIFSVTAHDPDSGDNARVTYS 490
Query: 146 ELE 148
E
Sbjct: 491 LAE 493
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 51 TTRLYKNVG---TLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIF 107
T +L N+G TL+ E + +E G G LV + + V+D NDN P
Sbjct: 291 TFQLDSNLGEISTLQSLDYEESRFYLMEVVAQDG---GALVASAKVVVTVQDVNDNAPEV 347
Query: 108 PVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
++ + S+ ED GTV+ + S D D G N +++ +
Sbjct: 348 ILTSLTSSLSEDCLPGTVIALFSVHDGDSGENGEIACS 385
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 99 DQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLR 158
D NDN P F + + + E+ GT + + A DAD+GVNS S+ +L N FS D+
Sbjct: 125 DINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSY-QLSSNLHFSLDVV 183
Query: 159 V--------EWVINRSVDQH 170
+ E V+ + +D+
Sbjct: 184 IGTDGQKYPELVLEQPLDRE 203
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 65 LRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP--IFPVSQYSLSI-----P 117
LR + W+ T NP PL + ++ V DQNDN P ++P S P
Sbjct: 525 LRDLQLWV----TASDSGNP-PLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAP 579
Query: 118 EDVPVGTVVQVVSASDADLGVNSKLSWNELEPN--GLFSSDL 157
G +V V A D D G N+ LS+ L+ + GLF+ L
Sbjct: 580 RSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGL 621
>sp|Q9Y5G8|PCDG5_HUMAN Protocadherin gamma-A5 OS=Homo sapiens GN=PCDHGA5 PE=2 SV=1
Length = 931
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 77 TKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADL 136
T G +P L GT + + V D NDN P+F S+YS+S+PE++PVGT + +++A+D D
Sbjct: 213 TALDGGDP-VLSGTTHIRVTVLDANDNAPLFTPSEYSVSVPENIPVGTRLLMLTATDPDE 271
Query: 137 GVNSKLSWN 145
G+N KL+++
Sbjct: 272 GINGKLTYS 280
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 51 TTRLYKNVG---TLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIF 107
T +L N+G TL+ E + +E G G LV + + V+D NDN P
Sbjct: 291 TFQLDSNLGEISTLQSLDYEESRFYLMEVVAQDG---GALVASAKVVVTVQDVNDNAPEV 347
Query: 108 PVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
++ + SI ED GTV+ + S D D G N +++ +
Sbjct: 348 ILTSLTSSISEDCLPGTVIALFSVHDGDSGENGEIACS 385
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
PL + + V D NDN P FP + YS S+ E+ P G + V+A D D G N++++++
Sbjct: 431 PLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYS 490
Query: 146 ELE 148
E
Sbjct: 491 LAE 493
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 99 DQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDL 157
D NDN P F + + + E+ GT + + A DAD+GVNS S+ +L N FS D+
Sbjct: 125 DINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSY-QLSSNLHFSLDV 182
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 65 LRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP--IFPVSQYSLSI-----P 117
LR + W+ T NP PL + ++ V DQNDN P ++P S P
Sbjct: 525 LRDLQLWV----TASDSGNP-PLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAP 579
Query: 118 EDVPVGTVVQVVSASDADLGVNSKLSWNELEPN--GLFSSDL 157
G +V V A D D G N+ LS+ L+ + GLF+ L
Sbjct: 580 RSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGL 621
>sp|Q5DRC3|PCDBH_PANTR Protocadherin beta-17 OS=Pan troglodytes GN=PCDHB17 PE=3 SV=1
Length = 795
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 61 LKRAL-RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L +AL R E+ L++ T G +P P +GT I++ D NDN P F +Y + +PE+
Sbjct: 196 LDQALDREEQPQLRLTLTALDGGSP-PRIGTSQVLIVIVDINDNVPEFAQRRYEVQVPEN 254
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWN 145
P+G++V VSA D D G + +LS++
Sbjct: 255 TPIGSLVITVSARDLDAGTHGELSYS 280
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 92 NTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPN 150
N T++V D NDN P F + Y+L + E+ + VSA+D D G N++++++ L P
Sbjct: 436 NITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQ 494
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 61 LKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDV 120
LK+AL EE ++ + + + S+ G L G C I V D NDN P +S I E+
Sbjct: 303 LKKALDFEE--IQSYHMEVEASDGGGLSGKCTVAIEVMDINDNAPELTMSLLISDILENS 360
Query: 121 PVGTVVQVVSASDADLGVNSKL 142
P TVV V SD D G N K+
Sbjct: 361 P-ETVVAVFGISDPDSGNNGKM 381
>sp|Q5DRA7|PCDGH_PANTR Protocadherin gamma-B5 OS=Pan troglodytes GN=PCDHGB5 PE=3 SV=1
Length = 923
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 55 YKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSL 114
Y + K R ++ + ++ T G NP PL GT I V D NDN P+F Y +
Sbjct: 191 YPELALEKTLDREQQSYHRLVLTALDGGNP-PLSGTTELRIQVTDANDNPPVFNRDVYRV 249
Query: 115 SIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFS 154
S+ E+VP GT V VSA+D D G+NS+++++ +FS
Sbjct: 250 SLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFS 289
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 59 GTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPE 118
GTL R +T E+ + + T PL + + + + D NDN P+F + Y +S+PE
Sbjct: 404 GTLDRE-QTPEYNVTITATDRGKP---PLSSSISVILHIRDVNDNAPVFHQASYLVSVPE 459
Query: 119 DVPVGTVVQVVSASDADLGVNSKLSW----NELEPNGLFS 154
+ P G + V ASD DLG+N ++S+ ++LEP L S
Sbjct: 460 NNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEPLALAS 499
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 67 TEEHWLKVENTKH-----KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVP 121
T + L E TK +G + G LV C I ++D+NDN+P I E+
Sbjct: 298 TTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAV 357
Query: 122 VGTVVQVVSASDADLGVNSKLSWN 145
GT++ ++ D D G N +++
Sbjct: 358 PGTLIALIKIHDQDSGENGEVNCQ 381
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS----KLSWN 145
+ED ND+ P F + + L I E GT + A DAD+G+NS KLS N
Sbjct: 123 IEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLN 175
>sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens
GN=CELSR1 PE=1 SV=1
Length = 3014
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 69 EHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQV 128
E+ L VE +G NPGPL T I VED+NDN P F Y + +PEDV + T V
Sbjct: 422 EYQLLVE-ANDQGRNPGPLSATATVYIEVEDENDNYPQFSEQNYVVQVPEDVGLNTAVLR 480
Query: 129 VSASDADLGVNSKLSWNELEPN 150
V A+D D G N+ + ++ L N
Sbjct: 481 VQATDRDQGQNAAIHYSILSGN 502
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 90 TCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEP 149
T + I V D N + P+F S Y++S+ ED PVGT + +SA+D D G N+++++ +P
Sbjct: 772 TAHVLINVTDANTHRPVFQSSHYTVSVSEDRPVGTSIATLSANDEDTGENARITYVIQDP 831
Query: 150 NGLFSSD 156
F D
Sbjct: 832 VPQFRID 838
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 68 EEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQ 127
E H L+V+ + S P P T T++V+D ND++P+F S+Y + E++ VG V
Sbjct: 317 ETHVLRVKAVDY--STP-PRSATTYITVLVKDTNDHSPVFEQSEYRERVRENLEVGYEVL 373
Query: 128 VVSASDADLGVNSKLSWNEL 147
+ ASD D +N+ L + L
Sbjct: 374 TIRASDRDSPINANLRYRVL 393
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 83 NPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKL 142
+P PL + + + D NDN P+F + L + E+ PVG+VV + A+D D G N+++
Sbjct: 975 SPTPLSASVEIQVTILDINDNAPMFEKDELELFVEENNPVGSVVAKIRANDPDEGPNAQI 1034
Query: 143 SWNELEPN-------GLFSSDLRV 159
+ +E + L + DLR
Sbjct: 1035 MYQIVEGDMRHFFQLDLLNGDLRA 1058
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 79 HKGSNPGPLVGTCNT-TIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLG 137
G P PL+ + ++ V D NDN PIF S + ++ E+VP+G V + A DAD G
Sbjct: 537 QDGGRP-PLINSSGVVSVQVLDVNDNEPIFVSSPFQATVLENVPLGYPVVHIQAVDADSG 595
Query: 138 VNSKLSWNELEPNGLF 153
N++L + ++ F
Sbjct: 596 ENARLHYRLVDTASTF 611
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
I++ D NDN P F Y SI ED P T + VSA+D D G N +L +
Sbjct: 880 ILILDANDNAPQFLWDFYQGSIFEDAPPSTSILQVSATDRDSGPNGRLLY 929
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 99 DQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
D NDN+P+F Y L + ED VG+ V + A D D NS +++
Sbjct: 679 DVNDNDPVFTQPTYELRLNEDAAVGSSVLTLQARDRD--ANSVITYQ 723
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 85 GPLVGTCNTTIIVEDQNDNNPIFPVSQ-----YSLSIPEDVPVGTVVQVVSASDADLGVN 139
PLV I++ DQNDN P+ P Q Y + P G V+ + A D D V+
Sbjct: 1079 APLVSRATVHILLVDQNDNPPVLPDFQILFNNYVTNKSNSFPTG-VIGCIPAHDPD--VS 1135
Query: 140 SKLSWNELEPNGL 152
L++ ++ N L
Sbjct: 1136 DSLNYTFVQGNEL 1148
>sp|P55285|CADH6_HUMAN Cadherin-6 OS=Homo sapiens GN=CDH6 PE=1 SV=1
Length = 790
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 48 ANPTTRLYKNVGTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQND 102
P + G +K AL E + V K G G L GT I + D ND
Sbjct: 204 GQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVND 263
Query: 103 NNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGL 152
N P FP S Y PE P GT + + ASDAD+G N+++ ++ + GL
Sbjct: 264 NPPRFPQSTYQFKTPESSPPGTPIGRIKASDADVGENAEIEYSITDGEGL 313
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNG 151
I + D NDN PIF Y+ ++PE VGT V V+A+DAD G ++K+ ++ L+
Sbjct: 147 IKIHDINDNEPIFTKEVYTATVPEMSDVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP 206
Query: 152 LFS 154
FS
Sbjct: 207 YFS 209
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNP---------GPLVGTCNTTIIVEDQNDNNPIFPVS 110
T+K+ L E+ KV K + SNP GP + I+VED D P+F
Sbjct: 330 TVKKLLDFEKK--KVYTLKVEASNPYVEPRFLYLGPFKDSATVRIVVEDV-DEPPVFSKL 386
Query: 111 QYSLSIPEDVPVGTVVQVVSASDADLGVN 139
Y L I ED + T + V+A D D N
Sbjct: 387 AYILQIREDAQINTTIGSVTAQDPDAARN 415
>sp|Q9Y5E7|PCDB2_HUMAN Protocadherin beta-2 OS=Homo sapiens GN=PCDHB2 PE=1 SV=1
Length = 798
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 61 LKRAL-RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L RAL R E+ +++ T G +P P GT I V D NDN P F Y + IPED
Sbjct: 198 LNRALDREEQPEIRLTLTALDGGSP-PRSGTALVRIEVVDINDNVPEFAKLLYEVQIPED 256
Query: 120 VPVGTVVQVVSASDADLGVNSKLSW 144
PVG+ V +VSA D D+G N ++S+
Sbjct: 257 SPVGSQVAIVSARDLDIGTNGEISY 281
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 38 AFTFSIAKFIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIV 97
++ FS A T RL G L + + ++ + ++ G L GTC + V
Sbjct: 280 SYAFSQASEDIRKTFRLSAKSGELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQV 339
Query: 98 EDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKL 142
D NDN P +S IPE++ T++ V S SD D G N ++
Sbjct: 340 MDLNDNPPELTMSTLINQIPENLQ-DTLIAVFSVSDPDSGDNGRM 383
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 92 NTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPN 150
N T++V D NDN P F + Y+L + E+ + VSA+D D G N++++++ L P
Sbjct: 438 NITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQ 496
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSD 156
+ D ND++P+F + L IPE + GT + A D D+G NS ++ + PN F +
Sbjct: 125 IRDVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYT-ISPNFHFHLN 183
Query: 157 LR--------VEWVINRSVDQH 170
L+ + V+NR++D+
Sbjct: 184 LQDSLDGIILPQLVLNRALDRE 205
>sp|Q5DRD2|PCDB2_PANTR Protocadherin beta-2 OS=Pan troglodytes GN=PCDHB2 PE=3 SV=1
Length = 798
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 61 LKRAL-RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L RAL R E+ +++ T G +P P GT I V D NDN P F Y + IPED
Sbjct: 198 LNRALDREEQPEIRLTLTALDGGSP-PRSGTALVRIEVVDINDNVPEFAKLLYEVQIPED 256
Query: 120 VPVGTVVQVVSASDADLGVNSKLSW 144
PVG+ V +VSA D D+G N ++S+
Sbjct: 257 SPVGSQVAIVSARDLDIGTNGEISY 281
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 38 AFTFSIAKFIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIV 97
++ FS A T RL G L + + ++ + ++ G L GTC + V
Sbjct: 280 SYAFSQASEDIRKTFRLSAKSGELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQV 339
Query: 98 EDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKL 142
D NDN P +S IPE++ T++ V S SD D G N ++
Sbjct: 340 MDLNDNPPELTMSTLINQIPENLQ-DTLIAVFSVSDPDSGDNGRM 383
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 92 NTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPN 150
N T++V D NDN P F + Y+L + E+ + VSA+D D G N++++++ L P
Sbjct: 438 NITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQ 496
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSD 156
+ D ND++P+F + L IPE + GT + A D D+G NS ++ + PN F +
Sbjct: 125 IRDINDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYT-ISPNFHFHLN 183
Query: 157 LR--------VEWVINRSVDQH 170
L+ + V+NR++D+
Sbjct: 184 LQDSLDGIILPQLVLNRALDRE 205
>sp|P79995|CAD10_CHICK Cadherin-10 OS=Gallus gallus GN=CDH10 PE=2 SV=1
Length = 789
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%)
Query: 69 EHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQV 128
E + V K G G L GT I + D NDN P FP S L IPE PVGT +
Sbjct: 231 EQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNDNPPRFPQSTIHLRIPESSPVGTPIGS 290
Query: 129 VSASDADLGVNSKLSWNELEPNG 151
+ A+DAD G N+++ + ++ +G
Sbjct: 291 IKATDADTGKNAEVEYRIIDGDG 313
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNG 151
I + D NDN P FP Y+ S+PE VGT V V+A+DAD G ++++ ++ L+
Sbjct: 148 IKIHDINDNEPTFPEEIYTASVPEMSVVGTSVVQVTATDADDPSYGNSARIIYSILQGQP 207
Query: 152 LFS 154
FS
Sbjct: 208 YFS 210
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 85 GPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
GP T I VED D P+F S Y + ED+ +GT++ V A D D
Sbjct: 363 GPFKDTTIVKISVEDV-DEPPVFSRSSYLFEVHEDIELGTIIGTVMARDPD 412
>sp|Q5DRD3|PCDBF_PANTR Protocadherin beta-15 OS=Pan troglodytes GN=PCDHB15 PE=3 SV=1
Length = 787
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 66 RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTV 125
R E+ L++ T G +P P GT I+V D NDN P F + Y + +PE+ PVG++
Sbjct: 202 REEQAELRLTLTAVDGGSP-PRSGTVQILILVLDANDNAPEFAQALYEVQVPENSPVGSL 260
Query: 126 VQVVSASDADLGVNSKLSWN 145
V VSA D D G N ++S++
Sbjct: 261 VVKVSARDLDTGTNGEISYS 280
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFS 154
++V D ND++P FP + +L IPE +GTV + A D D+G N+ ++N + PN F
Sbjct: 121 LLVTDINDHSPEFPEREITLKIPETSSLGTVFPLKKARDLDVGSNNVQNYN-ISPNSHFH 179
Query: 155 SDLRV--------EWVINRSVDQH 170
R E V++ +D+
Sbjct: 180 VSTRTRGDGRKYPELVLDTELDRE 203
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 92 NTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPN 150
N T++V D NDN P F + Y+L + E+ + VSA+D D G N++++++ L P
Sbjct: 436 NITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQ 494
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 80 KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVN 139
+ S+ G L G C+ ++ V D NDN P +S + IPE+ P T V + D D G N
Sbjct: 320 EASDGGGLSGKCSVSVKVLDVNDNFPELSISSLTSPIPENSP-ETEVALFRIRDRDSGEN 378
Query: 140 SKL 142
K+
Sbjct: 379 GKM 381
>sp|Q9Y5G0|PCDGH_HUMAN Protocadherin gamma-B5 OS=Homo sapiens GN=PCDHGB5 PE=2 SV=1
Length = 923
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 55 YKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSL 114
Y + K R ++ + ++ T G +P PL GT I V D NDN P+F Y +
Sbjct: 191 YPELALEKTLDREQQSYHRLVLTALDGGHP-PLSGTTELRIQVTDANDNPPVFNRDVYRV 249
Query: 115 SIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFS 154
S+ E+VP GT V VSA+D D G+NS+++++ +FS
Sbjct: 250 SLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFS 289
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 59 GTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPE 118
GTL R +T E+ + + T PL + + + + D NDN P+F + Y +S+PE
Sbjct: 404 GTLDRE-QTPEYNVTITATDRGKP---PLSSSISVILHIRDVNDNAPVFHQASYLVSVPE 459
Query: 119 DVPVGTVVQVVSASDADLGVNSKLSW----NELEPNGLFS 154
+ P G + V ASD DLG+N ++S+ ++LEP L S
Sbjct: 460 NNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEPLALAS 499
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 67 TEEHWLKVENTKH-----KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVP 121
T + L E TK +G + G LV C I ++D+NDN+P I E+
Sbjct: 298 TTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAV 357
Query: 122 VGTVVQVVSASDADLGVNSKLSWN 145
GT++ ++ D D G N +++
Sbjct: 358 PGTLIALIKIHDQDSGENGEVNCQ 381
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS----KLSWN 145
+ED ND+ P F + + L I E GT + A DAD+G+NS KLS N
Sbjct: 123 IEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLN 175
>sp|P55280|CADH6_RAT Cadherin-6 OS=Rattus norvegicus GN=Cdh6 PE=2 SV=1
Length = 789
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 ANPTTRLYKNVGTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQND 102
P + G +K AL E + V K G G L GT I + D ND
Sbjct: 204 GQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVND 263
Query: 103 NNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNG 151
N P FP S Y PE P GT + + ASDAD+G N+++ ++ + G
Sbjct: 264 NPPRFPQSTYQFKTPESSPPGTPIGRIKASDADVGENAEIEYSITDGEG 312
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNG 151
I + D NDN PIF Y+ ++PE VGT V V+A+DAD G ++K+ ++ L+
Sbjct: 147 IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP 206
Query: 152 LFS 154
FS
Sbjct: 207 YFS 209
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNP---------GPLVGTCNTTIIVEDQNDNNPIFPVS 110
T+K+ L E+ +V K + SNP GP + I+V+D D P+F
Sbjct: 330 TVKKLLDFEKK--RVYTLKVEASNPHIEPRFLYLGPFKDSATVRIVVDDV-DEPPVFSKP 386
Query: 111 QYSLSIPEDVPVGTVVQVVSASDADLGVN 139
Y L I ED + T + V+A D D N
Sbjct: 387 AYILQIREDAQINTTIGSVAAQDPDAARN 415
>sp|P97326|CADH6_MOUSE Cadherin-6 OS=Mus musculus GN=Cdh6 PE=1 SV=2
Length = 790
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 ANPTTRLYKNVGTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQND 102
P + G +K AL E + V K G G L GT I + D ND
Sbjct: 204 GQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVND 263
Query: 103 NNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNG 151
N P FP S Y PE P GT + + ASDAD+G N+++ ++ + G
Sbjct: 264 NPPRFPQSTYQFKTPESSPPGTPIGRIKASDADVGENAEIEYSITDGEG 312
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEE--HWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDN 103
FI N T ++ KR R E+ + L+ + + P + I + D NDN
Sbjct: 101 FIINENT---GDIQATKRLDREEKPVYILRAQAVNRRTGRP--VEPESEFIIKIHDINDN 155
Query: 104 NPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFS 154
PIF Y+ ++PE VGT V V+A+DAD G ++K+ ++ L+ FS
Sbjct: 156 EPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFS 209
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNP---------GPLVGTCNTTIIVEDQNDNNPIFPVS 110
T+K+ L E+ KV K + SNP GP + I+V+D D P+F
Sbjct: 330 TVKKLLDFEKK--KVYTLKVEASNPHVEPRFLYLGPFKDSATVRIVVDDV-DEPPVFSKL 386
Query: 111 QYSLSIPEDVPVGTVVQVVSASDADLGVN 139
Y L I ED + T + V+A D D N
Sbjct: 387 AYILQIREDARINTTIGSVAAQDPDAARN 415
>sp|Q5DRC6|PCDB8_PANTR Protocadherin beta-8 OS=Pan troglodytes GN=PCDHB8 PE=3 SV=1
Length = 801
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 61 LKRAL-RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L +AL R EE L++ T G +P P GT I V D NDN P F Y + I ED
Sbjct: 197 LDKALDREEEAELRLTLTALDGGSP-PRSGTAQVYIEVVDVNDNAPEFEQPFYRVQISED 255
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVEWV 162
P+ +V VSA+D D GVN ++S++ + + S +V+++
Sbjct: 256 SPISFLVVKVSATDVDTGVNGEISYSLFQASDEISKTFKVDFL 298
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 80 KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVN 139
+ + G G C I V D ND+ P +S ++ IPE+ P TVV + S SD D G N
Sbjct: 321 EARDAGGFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPENAP-ETVVALFSVSDLDSGEN 379
Query: 140 SKLSWN 145
K+S +
Sbjct: 380 GKISCS 385
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 84 PGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLS 143
PG L N T++V D NDN P F + Y+L + E+ + VSA+D D G N++++
Sbjct: 430 PG-LTTHLNMTVLVSDVNDNAPAFTQASYTLFVRENNSPALHIGSVSATDRDSGTNAQVT 488
Query: 144 WNELEPN 150
++ L P
Sbjct: 489 YSLLPPQ 495
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLF--- 153
V D ND++P+F Q + + E P GT + +A D D+G N+ ++ + PN F
Sbjct: 124 VIDINDHSPVFLDKQMLVKVSESSPPGTAFPLKNAEDLDVGQNNIENYI-ISPNSYFRVL 182
Query: 154 ---SSDLRV--EWVINRSVDQH 170
SD R E V+++++D+
Sbjct: 183 TRKRSDGRKYPELVLDKALDRE 204
>sp|Q9UN66|PCDB8_HUMAN Protocadherin beta-8 OS=Homo sapiens GN=PCDHB8 PE=2 SV=3
Length = 801
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 61 LKRAL-RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L +AL R EE L++ T G +P P GT I V D NDN P F Y + I ED
Sbjct: 197 LDKALDREEEAELRLTLTALDGGSP-PRSGTAQVYIEVVDVNDNAPEFEQPFYRVQISED 255
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVEWV 162
P+ +V VSA+D D GVN ++S++ + + S +V+++
Sbjct: 256 SPISFLVVKVSATDVDTGVNGEISYSLFQASDEISKTFKVDFL 298
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 80 KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVN 139
+ + G G C I V D ND+ P +S ++ IPE+ P TVV + S SD D G N
Sbjct: 321 EARDAGGFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPENAP-ETVVALFSVSDLDSGEN 379
Query: 140 SKLSWN 145
K+S +
Sbjct: 380 GKISCS 385
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 92 NTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPN 150
N T++V D NDN P F + Y+L + E+ + VSA+D D G N++++++ L P
Sbjct: 437 NMTVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQ 495
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLF--- 153
V D ND++P+F Q + + E P GT + +A D D+G N+ ++ + PN F
Sbjct: 124 VIDINDHSPVFLDKQMLVKVSESSPPGTAFPLKNAEDLDIGQNNIENYI-ISPNSYFRVL 182
Query: 154 ---SSDLRV--EWVINRSVDQH 170
SD R E V+++++D+
Sbjct: 183 TRKRSDGRKYPELVLDKALDRE 204
>sp|Q8QGH3|CAD20_CHICK Cadherin-20 OS=Gallus gallus GN=CDH20 PE=1 SV=1
Length = 798
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 48 ANPTTRLYKNVGTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQND 102
P + G ++ AL +E++ + K G G L GT I + D ND
Sbjct: 209 GQPYFSVDSRTGLIRTALMNMDREAKEYYEVIVQAKDMGGQLGGLAGTTTVNITLSDVND 268
Query: 103 NNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVE 160
N P FP Y +S+ E PV + V V A D D G+N+++ ++ ++ +GL D+ +
Sbjct: 269 NPPRFPQKHYQMSVLESAPVSSTVGRVVAKDLDEGINAEMKYSLVDGDGLDVFDINTD 326
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNP---------GPLVGTCNTTIIVEDQNDNNPIFPVS 110
T+++ L E K K +G+NP GP T I VED D P+F S
Sbjct: 335 TVRKPLSFESK--KSYTLKVEGANPHLEMRFLNLGPFRDTTTVHISVEDV-DEPPVFEPS 391
Query: 111 QYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
Y + +PEDV +G +Q++SA D D+ NS
Sbjct: 392 FYFVEVPEDVEIGATIQIISAKDPDVTNNS 421
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
F + TT + L R R++ + L+ + + P + I ++D NDN P
Sbjct: 106 FTIDDTTGDIHAIQRLDREERSQ-YTLRAQALDRRTGRP--MEPESEFIIKIQDINDNEP 162
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFSSDLR 158
F Y S+PE PVGT V V+A+DAD G ++++ ++ L+ FS D R
Sbjct: 163 KFLDGPYVASVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSR 218
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 66 RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTV 125
R + W + + +NP VG+ + T+ V D NDN P F Y + E+ G +
Sbjct: 453 REDVSWHNITVLAMELNNPSQ-VGSVSVTVKVLDVNDNAPEF-ARFYEAFVCENAKAGQL 510
Query: 126 VQVVSASDAD 135
+Q VSA D D
Sbjct: 511 IQTVSAIDRD 520
>sp|Q9Y5E8|PCDBF_HUMAN Protocadherin beta-15 OS=Homo sapiens GN=PCDHB15 PE=1 SV=1
Length = 787
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 66 RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTV 125
R E+ L++ T G +P P GT I+V D NDN P F + Y + +PE+ PVG++
Sbjct: 202 REEQAELRLTLTAVDGGSP-PRSGTVQILILVLDANDNAPEFVQALYEVQVPENSPVGSL 260
Query: 126 VQVVSASDADLGVNSKLSWN 145
V VSA D D G N ++S++
Sbjct: 261 VVKVSARDLDTGTNGEISYS 280
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFS 154
++V D ND++P FP + +L IPE +GTV + A D D+G N+ ++N + PN F
Sbjct: 121 LLVTDINDHSPEFPEREMTLKIPETSSLGTVFPLKKARDLDVGSNNVQNYN-ISPNSHFH 179
Query: 155 SDLRV--------EWVINRSVDQH 170
R E V++ +D+
Sbjct: 180 VSTRTRGDGRKYPELVLDTELDRE 203
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 94 TIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEP 149
T++V D NDN P F + Y+L + E+ + VSA+D D G N++++++ L P
Sbjct: 438 TVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPP 493
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 80 KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVN 139
+ S+ G L G C+ ++ V D NDN P +S + IPE+ P T V + D D G N
Sbjct: 320 EASDGGGLSGKCSVSVKVLDVNDNFPELSISSLTSPIPENSP-ETEVALFRIRDRDSGEN 378
Query: 140 SKL 142
K+
Sbjct: 379 GKM 381
>sp|Q9Y5E1|PCDB9_HUMAN Protocadherin beta-9 OS=Homo sapiens GN=PCDHB9 PE=2 SV=2
Length = 797
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 61 LKRAL-RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L +AL R E+ L + T G +P GT I+V D NDN P F + Y PE+
Sbjct: 196 LDKALDREEQEELSLTLTALDGGSPS-RSGTSTIRIVVLDVNDNAPQFAQALYETQAPEN 254
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVEWVIN 164
PVG+++ VSA DAD GVN+++S++ + S D+ + IN
Sbjct: 255 SPVGSLIVKVSAGDADSGVNAEVSYSFFDA----SEDILTTFQIN 295
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 94 TIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPN 150
T+ V D NDN P F + Y+L + E+ + VSA+D D G N++++++ L P
Sbjct: 438 TLQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQ 494
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 85 GPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSK 141
G L C I V D NDN P +S S S+ E+ P G V+ V D D G N K
Sbjct: 325 GGLSARCTVLIKVLDSNDNPPELIISSLSNSVAENSP-GIVLAVFKIKDRDSGENGK 380
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
V D ND++P+F + L I E+ GT ++ A D D G NS
Sbjct: 123 VRDINDHSPVFRHKEMVLKISENTAEGTAFRLERAQDPDEGHNS 166
>sp|Q13634|CAD18_HUMAN Cadherin-18 OS=Homo sapiens GN=CDH18 PE=2 SV=1
Length = 790
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 46 FIANPTTRLYKN-VGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNN 104
F +P T + + + + R R EH+ V K G L G+ I + D NDN
Sbjct: 208 FSVDPKTGVIRTALHNMDREAR--EHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNP 265
Query: 105 PIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGL 152
P FP Y L +PE VG+ V + A+DAD G N+ ++++ + +G+
Sbjct: 266 PRFPQKHYQLYVPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGM 313
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
FI + TT + +L R +T H++ + +N PL I V+D NDN P
Sbjct: 101 FIIDDTTGDIHSTKSLDREQKT--HYVLHAQAIDRRTNK-PLEPESEFIIKVQDINDNAP 157
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFSSD 156
F Y +++PE +GT V V+A+DAD G ++++ ++ L+ FS D
Sbjct: 158 KFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVD 211
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 82 SNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
S+ GP IIV D D P+F + Y + + E+ +GTVV V A D D
Sbjct: 359 SHLGPFKDATMLKIIVGDV-DEPPLFSMPSYLMEVYENAKIGTVVGTVLAQDPD 411
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 57 NVGTLKRAL---RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
N GT++ R E W + T + NP L+ I V D NDN P +Y
Sbjct: 436 NTGTIRTTKVLDREETPWYNITVTASEIDNPD-LLSHVTVGIRVLDVNDNPPEL-AREYD 493
Query: 114 LSIPEDVPVGTVVQVVSASDAD 135
+ + E+ G V+ +SA+D D
Sbjct: 494 IIVCENSKPGQVIHTISATDKD 515
>sp|Q9Y5F0|PCDBD_HUMAN Protocadherin beta-13 OS=Homo sapiens GN=PCDHB13 PE=2 SV=1
Length = 798
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 61 LKRAL-RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L +AL R EE L++ T G +P P GT I V D NDN P F Y + I ED
Sbjct: 197 LDKALDREEEAELRLTLTALDGGSP-PRSGTAQVYIEVLDVNDNAPEFEQPFYRVQISED 255
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWN 145
PVG +V VSA+D D GVN ++S++
Sbjct: 256 SPVGFLVVKVSATDVDTGVNGEISYS 281
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 87 LVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNE 146
L+ N T+++ D NDN P F + Y+L + E+ ++ VSA+D D G N++++++
Sbjct: 431 LITQLNMTVLIADVNDNAPAFTQTSYTLFVRENNSPALHIRSVSATDRDSGTNAQVTYSL 490
Query: 147 LEPN 150
L P
Sbjct: 491 LPPQ 494
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 61 LKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDV 120
LK+ L E+ L+ + + G G C I V D ND+ P +S ++ IPE+
Sbjct: 304 LKKQLDFEK--LQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPENA 361
Query: 121 PVGTVVQVVSASDADLGVNSKLSWN 145
P TVV + S SD D G N K+S +
Sbjct: 362 P-ETVVALFSVSDLDSGENGKISCS 385
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLF--- 153
V D ND++P+F Q + + E P GT + +A D D+G N+ ++ + PN F
Sbjct: 124 VIDINDHSPVFLDKQMLVKVSESSPPGTTFPLKNAEDLDVGQNNIENYI-ISPNSYFRVL 182
Query: 154 ---SSDLRV--EWVINRSVDQH 170
SD R E V+++++D+
Sbjct: 183 TRKRSDGRKYPELVLDKALDRE 204
>sp|Q5DRD6|PCDBD_PANTR Protocadherin beta-13 OS=Pan troglodytes GN=PCDHB13 PE=3 SV=1
Length = 798
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 61 LKRAL-RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L +AL R EE L++ T G +P P GT I V D NDN P F Y + I ED
Sbjct: 197 LDKALDREEEAELRLTLTALDGGSP-PRSGTAQVYIEVLDVNDNAPEFEQPFYRVQISED 255
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWN 145
PVG +V VSA+D D GVN ++S++
Sbjct: 256 SPVGFLVVKVSATDVDTGVNGEISYS 281
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 61 LKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDV 120
LK+ L E+ L+ + + G G C I V D ND+ P +S ++ IPE+
Sbjct: 304 LKKQLDFEK--LQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPENA 361
Query: 121 PVGTVVQVVSASDADLGVNSKLSWN 145
P TVV + S SD D G N K+S +
Sbjct: 362 P-ETVVALFSVSDLDSGENGKISCS 385
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 86 PLVGT-CNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
P++ T N T+++ D NDN P F + Y+L + E+ + VSA+D D G N+++++
Sbjct: 429 PMLKTQLNMTVLIADVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY 488
Query: 145 NELEPN 150
+ L P
Sbjct: 489 SLLPPQ 494
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLF--- 153
V D ND++P+F Q + + E P GT + +A D D+G N+ ++ + PN F
Sbjct: 124 VIDINDHSPVFLDKQMLVKVSESSPPGTAFPLKNAEDLDVGQNNIENYI-ISPNSHFRVL 182
Query: 154 ---SSDLRV--EWVINRSVDQH 170
SD R E V+++++D+
Sbjct: 183 TRKRSDGRKYPELVLDKALDRE 204
>sp|Q9Y5G6|PCDG7_HUMAN Protocadherin gamma-A7 OS=Homo sapiens GN=PCDHGA7 PE=2 SV=1
Length = 932
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 31 KSGMYAPAFTFSIAKFIANPTTRLYKNVGTLKRAL-RTEEHWLKVENTKHKGSNPGPLVG 89
+S +P FS+A + T+ + V L+R L R EE + T G +P P
Sbjct: 168 QSYQLSPNRHFSLAVQSGDDETKYPELV--LERVLDREEERVHHLVLTASDGGDP-PRSS 224
Query: 90 TCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
T + + V D ND+ P+F + QY +++PE+VPVGT + V A D D GVN +++++
Sbjct: 225 TAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYS 280
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 53 RLYKNVGTLKRALRT---EEHWLKVENTKHKGSNPG--PLVGTCNTTIIVEDQNDNNPIF 107
+L K++ R + T + L + N K ++ G PL + + V D NDN P F
Sbjct: 393 KLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPPTF 452
Query: 108 PVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELE 148
P S YS+ I E+ P G + +V+A D D N++++++ E
Sbjct: 453 PHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAE 493
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 54 LYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
L + TL+ E + ++E G PG L I V D NDN P ++ S
Sbjct: 297 LTGEISTLEGLDYEETAFYEMEVQAQDG--PGSLT-KAKVLITVLDVNDNAPEVTMTSLS 353
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLS 143
SIPED P+GTV+ + D D G N +++
Sbjct: 354 SSIPEDTPLGTVIALFYLQDRDSGKNGEVT 383
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 72 LKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP--IFPVSQYSLSI-----PEDVPVGT 124
L++ T H +P PL + ++ V DQNDN P ++P S P G
Sbjct: 528 LQLRVTAHDSGDP-PLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGY 586
Query: 125 VVQVVSASDADLGVNSKLSWNELEPN--GLFSSDL 157
+V V A D D G N+ LS+ L+ + GLF+ L
Sbjct: 587 LVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGL 621
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 99 DQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLR 158
D NDN P F + ++ I E+ G + A D D+G NS S+ +L PN FS ++
Sbjct: 125 DINDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSY-QLSPNRHFSLAVQ 183
Query: 159 V--------EWVINRSVDQHTNK 173
E V+ R +D+ +
Sbjct: 184 SGDDETKYPELVLERVLDREEER 206
>sp|Q08DJ5|CAD18_BOVIN Cadherin-18 OS=Bos taurus GN=CDH18 PE=2 SV=1
Length = 790
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 59 GTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
G ++ AL EH+ V K G L G+ I + D NDN P FP Y
Sbjct: 215 GVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQ 274
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGL 152
L +PE VG+ V + A+DAD G N+ ++++ + +G+
Sbjct: 275 LYVPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGV 313
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
FI + TT + +L R +T H++ + +N PL I V+D NDN P
Sbjct: 101 FIIDDTTGDIHSTKSLDREQKT--HYVLHAQAIDRRTNK-PLEPESEFIIKVQDINDNAP 157
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFSSD 156
F Y +++PE +GT V V+A+DAD G ++++ ++ L+ FS D
Sbjct: 158 KFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVD 211
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 57 NVGTLKRAL---RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
N GT+K R E W + + NP L+ I V D NDN P +Y
Sbjct: 436 NTGTIKTTKVLDREETPWYNITVAASENDNPS-LLSHVTVGIRVLDVNDNPPEL-AREYD 493
Query: 114 LSIPEDVPVGTVVQVVSASDAD 135
+ + E+ G V+ +SA+D D
Sbjct: 494 IVVCENSKPGQVIHTISATDKD 515
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 82 SNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
S+ GP IIV D D P+F + Y + + E+ +GTVV V A D D
Sbjct: 359 SHLGPFKDATMLKIIVGDV-DEPPLFSMPSYVMEVYENAKIGTVVGTVLAQDPD 411
>sp|Q5DRB3|PCDG7_PANTR Protocadherin gamma-A7 OS=Pan troglodytes GN=PCDHGA7 PE=3 SV=1
Length = 932
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 31 KSGMYAPAFTFSIAKFIANPTTRLYKNVGTLKRAL-RTEEHWLKVENTKHKGSNPGPLVG 89
+S +P FS+A + T+ + V L+R L R EE + T G +P P
Sbjct: 168 QSYQLSPNRHFSLAVQSGDDGTKYPELV--LERVLDREEERVHHLVLTASDGGDP-PRSS 224
Query: 90 TCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
T + + V D ND+ P+F + QY +++PE+VPVGT + V A D D GVN +++++
Sbjct: 225 TAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYS 280
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 53 RLYKNVGTLKRALRT---EEHWLKVENTKHKGSNPG--PLVGTCNTTIIVEDQNDNNPIF 107
+L K++ R + T + L + N K ++ G PL + + V D NDN P F
Sbjct: 393 KLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPPTF 452
Query: 108 PVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELE 148
P S YS+ I E+ P G + +V+A D D N++++++ E
Sbjct: 453 PHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAE 493
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 54 LYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
L + TL+ E + ++E G PG L I V D NDN P ++ S
Sbjct: 297 LTGEISTLEGLDYEETAFYEMEVQAQDG--PGSLT-KAKVLITVLDVNDNAPEVTMTSLS 353
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLS 143
SIPED P+GTV+ + D D G N +++
Sbjct: 354 SSIPEDTPLGTVIALFYLQDRDSGKNGEVT 383
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 72 LKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP--IFPVSQYSLSI-----PEDVPVGT 124
L++ T H +P PL + ++ V DQNDN P ++P S P G
Sbjct: 528 LQLRVTAHDSGDP-PLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGY 586
Query: 125 VVQVVSASDADLGVNSKLSWNELEPN--GLFSSDL 157
+V V A D D G N+ LS+ L+ + GLF+ L
Sbjct: 587 LVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGL 621
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 99 DQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLR 158
D NDN P F + ++ I E+ G + A D D+G NS S+ +L PN FS ++
Sbjct: 125 DINDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSY-QLSPNRHFSLAVQ 183
Query: 159 V--------EWVINRSVDQHTNK 173
E V+ R +D+ +
Sbjct: 184 SGDDGTKYPELVLERVLDREEER 206
>sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 PE=2 SV=1
Length = 3298
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 82 SNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSK 141
++ GP G N T++VED NDN P F S Y + + E P G+ + VSA+D D G N
Sbjct: 2351 AHDGPHEGRANLTVLVEDVNDNAPAFSQSLYQVMLLEHTPPGSAILSVSATDRDSGANGH 2410
Query: 142 LSWNELEPNGLFSSD 156
+S++ P FS D
Sbjct: 2411 ISYHLASPADGFSVD 2425
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 59 GTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPE 118
GT++ R E ++ G P L T T+ V D ND+ P FPV YS+ +PE
Sbjct: 1808 GTMRPLDREVEPAFQLRIEARDGGQPA-LSATLLLTVTVLDANDHAPAFPVPAYSVEVPE 1866
Query: 119 DVPVGTVVQVVSASDADLGVNSKLSW 144
DVP GT++ + A D D G N +++
Sbjct: 1867 DVPAGTLLLQLQAHDPDAGANGHVTY 1892
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 101 NDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS--KLSWNELEPNGLFSSD 156
NDN P+F + Y +++PED PVG + V ASDAD G + + + + +P+GLF D
Sbjct: 2596 NDNPPVFTRASYRVTVPEDTPVGAELLHVEASDADPGPHGLVRFTVSSGDPSGLFELD 2653
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 81 GSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
GS P ++++D NDN+P FP + ++ +P + GT + + A D D GVNS
Sbjct: 868 GSGVPPAFAVARVRVLLDDVNDNSPAFPAPEDTVLLPPNTAPGTPIYTLRALDPDSGVNS 927
Query: 141 KLSWNELEPNG 151
++++ L G
Sbjct: 928 RVTFTLLAGGG 938
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 94 TIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELE 148
TI V+D ND+ P FP++ S S+ E+ P GT+V + A D D G +L ++ LE
Sbjct: 2693 TIEVQDVNDHGPAFPLNLLSTSVAENQPPGTLVTTLHAIDGDAGAFGRLRYSLLE 2747
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 53 RLYKNVGTLK--RALRTE---EHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIF 107
RL+ + G L R L E EH L V + H GS P T T+ V D ND P F
Sbjct: 1593 RLHSSTGALSVVRPLDREQRAEHVLTVVASDH-GSPPRS--ATQVLTVSVADVNDEAPTF 1649
Query: 108 PVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
+YS+ + E+ P GT + + A+D D+G N ++++
Sbjct: 1650 QQQEYSVLLRENNPPGTSLLTLRATDPDVGANGQVTY 1686
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
F +PT+ + +L L + + V G P PL + ++ ++D NDN P
Sbjct: 521 FSIDPTSGIITTAASLDYELEPQPQLIVVAT---DGGLP-PLASSATVSVALQDVNDNEP 576
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
F + Y+ S+PE GT V+A+DAD G LS++
Sbjct: 577 QFQRTFYNASLPEGTQPGTCFLQVTATDADSGPFGLLSYS 616
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
TL+ R E+ + + +P P + + VED+ND+ P F + SL +PE
Sbjct: 1705 TLRALDREEQEEINLTVYAQDRGSP-PQLTHVTVRVAVEDENDHAPTFGSAHLSLEVPEG 1763
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWNEL--EPNGLFSSDL 157
T+ ++ ASD D+G N +L + L +P+G F DL
Sbjct: 1764 QDPQTLT-MLRASDPDVGANGQLQYRILDGDPSGAFVLDL 1802
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 85 GPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
G L + + D+NDN P F +Y+ SI P GT V + A D D G + +LS+
Sbjct: 663 GGLKSMVYVKVFLSDENDNPPQFYPREYAASISAQSPPGTAVLRLRAHDPDQGSHGRLSY 722
Query: 145 NELEPNG--LFSSD-----LRVEWVINRSVD 168
+ L N LF+ D L V W + R +
Sbjct: 723 HILAGNSPPLFTLDEQSGLLTVAWPLARRAN 753
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
++DQND+ P F +S Y +++ ED+P G+ + + A+DAD
Sbjct: 2472 LQDQNDHAPSFTLSHYRVAVTEDLPPGSTLLTLEATDAD 2510
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 87 LVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNE 146
LVG+ T++V D NDN P P + L + ED +G+ + V+ +D D G + W
Sbjct: 2257 LVGSATLTVMVIDTNDNRPTIP-QPWELRVSEDALLGSEIAQVTGNDVDSG---PVLWYV 2312
Query: 147 LEPNG 151
L P+G
Sbjct: 2313 LSPSG 2317
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 81 GSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTV----VQVVSASDADL 136
G+ GPL T + TI V D ND+ P FP S L +P P + + + A D D
Sbjct: 1934 GAAAGPLSTTVSVTITVRDVNDHAPTFPTSPLRLRLPRPGPSFSTPTLALATLRAEDRDA 1993
Query: 137 GVNSKL 142
G N+ +
Sbjct: 1994 GANASI 1999
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 59 GTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPE 118
G L R R+ H++ GS P + T++ D ND+ P F S+Y + E
Sbjct: 211 GELDRENRS--HYMLQLEAYDGGSPPRRAQALLDVTLL--DINDHAPAFNQSRYHAVVSE 266
Query: 119 DVPVGTVVQVVSASDADLGVNSKLSWN----ELEPNGLFSSD 156
+ G+ V V ASDAD GVN +++ + E +G FS D
Sbjct: 267 SLAPGSPVLQVFASDADAGVNGAVTYEINRRQSEGDGPFSID 308
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
F +P T + TL R ++ L + GS P GT + ++ D NDN+P
Sbjct: 1154 FRIHPQTGEVTTLQTLDREQQSSYQLLV--QVQDGGSPPRSTTGTVHVAVL--DLNDNSP 1209
Query: 106 IFPVSQ------YSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNG-LFS 154
F + + +P+ VP GT+V + A D D G N + + P LFS
Sbjct: 1210 TFLQASGAAGGGLPIQVPDRVPPGTLVTTLQAKDPDEGENGTILYTLTGPGSELFS 1265
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 65 LRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGT 124
+RT + + +++ + P T T+ V D ND+ P FP ++ +L +PE GT
Sbjct: 101 VRTARVLDREQRDRYRFTAVTPDGATVEVTVRVADINDHAPAFPQARAALQVPEHTAFGT 160
Query: 125 VVQVVSASDADLG 137
+ A DAD G
Sbjct: 161 RYPLEPARDADAG 173
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
V D+NDN P+F S + +PED P G V A D DLG +++S+
Sbjct: 1536 VTDENDNAPVF-ASPSRVRLPEDQPPGPAALHVVARDPDLGEAARVSY 1582
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 68 EEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQ 127
E + LKV + G GT + + +QN+++P L++ E+ P GT V
Sbjct: 1066 ELYILKVMAVSGSKAELGQQTGTATVRVSILNQNEHSPRLSEDPTFLAVAENQPPGTSVG 1125
Query: 128 VVSASDADLGVNSKLSWN 145
V A+D D G N +L+++
Sbjct: 1126 RVFATDRDSGPNGRLTYS 1143
Score = 37.0 bits (84), Expect = 0.071, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 105 PIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS-KLSWNELEPNGLFSSD 156
PIF QY S+PEDV GT V +V A + + LS + +P GLFS D
Sbjct: 788 PIFEQLQYVFSVPEDVAPGTSVGIVQAHNPPGRLAPVTLSLSGGDPRGLFSLD 840
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 61 LKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP----IFPVSQYSLSI 116
L+R L E+ + + + P +G+ T+ V D NDN P IF + S +
Sbjct: 316 LERPLDFEQRRVHELVVQARDGGAHPELGSAFVTVHVRDANDNQPSMTVIFLSADGSPQV 375
Query: 117 PEDVPVGTVVQVVSASDADLG 137
E P G +V +S SD D G
Sbjct: 376 SEAAPPGQLVARISVSDPDDG 396
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 94 TIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN---ELEPN 150
T+ ++D NDN P F Y +PE P+ + V A D D G ++S++
Sbjct: 2158 TLTLQDANDNAPRFLRPHYVAFLPESRPLEGPLLQVEADDLDQGSGGQISYSLAASQPAR 2217
Query: 151 GLFSSD 156
GLF D
Sbjct: 2218 GLFHVD 2223
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 62 KRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLS-IPEDV 120
+R R E + T +P PL + V D NDN P F Y +PE
Sbjct: 428 RRLDREERDAYNLRVTATDSGSP-PLRAEAAFVLHVTDVNDNAPAFDRQLYRPEPLPEVA 486
Query: 121 PVGTVVQVVSASDADLGVNSKLSWN 145
G+ V V+A D D G N +++++
Sbjct: 487 LPGSFVVRVTARDPDQGTNGQVTYS 511
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD-LGVNSKLSWNEL--EP 149
V+D+N++ P F +L++PE+ G + ASDAD G NS + + L EP
Sbjct: 1426 VQDENEHAPAFARDPLALALPENPEPGAALYTFRASDADGPGPNSDVRYRLLRQEP 1481
>sp|Q9V5N8|STAN_DROME Protocadherin-like wing polarity protein stan OS=Drosophila
melanogaster GN=stan PE=1 SV=4
Length = 3579
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 81 GSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
++ G T I + D N+ PIF + YS S+ ED PVGT V VVSA+D+D+GVN+
Sbjct: 871 ATDSGGRSDTATVHINITDANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNA 930
Query: 141 KLSW--NELEPNGLFSSD 156
++++ NE NGL S D
Sbjct: 931 QITYSLNEESINGLGSPD 948
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
F NP T L R T + L V T G NP L T + I V D NDN P
Sbjct: 950 FSINPQTGAIVTNAPLDRET-TSGYLLTV--TAKDGGNPS-LSDTTDVEIGVTDVNDNAP 1005
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
F Y SI ED VGT V V+ASD D+G+N ++ +
Sbjct: 1006 AFKSPLYQASILEDALVGTSVIQVAASDPDVGLNGRIKY 1044
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 44 AKFIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDN 103
F+ +PT+ + L R H + KGS P L T I +ED ND+
Sbjct: 1054 GSFVIDPTSGTIRTNKGLDRESVAVFHLTAI--AVDKGSPP--LSSTVEVQIRLEDVNDS 1109
Query: 104 NPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
P F + +L +PE+ PVG+VV + A D D GVN+ + ++
Sbjct: 1110 PPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYS 1151
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW--NELEPNGLFS 154
V D NDN P F SQ+ S+ E+VPVG + V A D+D G N+++++ +E + N +
Sbjct: 679 VIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSDEGANAEITYSISERDDNFPLA 738
Query: 155 SDLRVEWV 162
D R WV
Sbjct: 739 VDPRTGWV 746
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
F + T + +L R L + H+ +V T S P P GT + V D ND++P
Sbjct: 407 FKVDSRTGVVTTSASLDREL-MDVHYFRVVATDD--SFP-PRSGTTTLQVNVLDCNDHSP 462
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
F Q+ SI E VG+ V + A+D D+G N+++ +
Sbjct: 463 TFEAEQFEASIREGATVGSTVITLRATDQDIGKNAEIEY 501
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 58 VGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIP 117
V T+K R E+ + G P P + + I V+D NDN+P F Y ++
Sbjct: 746 VQTIKPLDREEQGRFAFQVVAKDGGVP-PKSASSSVVITVQDVNDNDPAFNPKYYEANVG 804
Query: 118 EDVPVGTVVQVVSASDAD 135
ED P GT V V+A+D D
Sbjct: 805 EDQPPGTPVTTVTATDPD 822
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 89 GTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGT---VVQVVSASDADLGVNSKLSW 144
T + + V D NDN P F Y++ +PED GT V + A+DAD G N+ + +
Sbjct: 563 ATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGNNAAIRY 621
>sp|Q5DRD5|PCDBE_PANTR Protocadherin beta-14 OS=Pan troglodytes GN=PCDHB14 PE=3 SV=1
Length = 798
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 61 LKRALRTE-EHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L RAL E E L++ T G +P P GT I V D NDN P FP S Y + +PED
Sbjct: 196 LDRALDYEQEAELRLTLTAVDGGSP-PKSGTTLVLIKVLDINDNAPEFPQSLYEVQVPED 254
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVEWVIN 164
P+G+ + +SA D D G K+S+ S D+R + IN
Sbjct: 255 RPLGSWIATISAKDLDAGNYGKISYTFFHA----SEDIRKTFEIN 295
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 92 NTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPN 150
N T++V D NDN P F + Y+L + E+ + VSA+D D G N++++++ L P
Sbjct: 436 NITVLVSDVNDNAPAFTQTSYTLFLRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQ 494
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLF--- 153
V+D ND++P F + + I E VG + SA D D+G NS ++ + PN F
Sbjct: 123 VKDINDHSPTFLDKEILIKISEGTTVGATFLMESAQDLDVGSNSLQNYT-ISPNSHFYIK 181
Query: 154 ---SSDLRV--EWVINRSVD 168
SSD ++ E V++R++D
Sbjct: 182 IPDSSDRKIYPELVLDRALD 201
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 80 KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVN 139
+ ++ G L G C + V D NDN P +S + IPE+ T+V + S D D G N
Sbjct: 320 QATDGGGLSGKCTLLVKVMDINDNPPEVTISSITKRIPENAS-ETLVALFSILDQDSGDN 378
Query: 140 SKL 142
++
Sbjct: 379 GRM 381
>sp|Q5DRA5|PCDGJ_PANTR Protocadherin gamma-B7 OS=Pan troglodytes GN=PCDHGB7 PE=3 SV=1
Length = 929
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
TL R ++ H + T G +P P GT I+V D NDN P+F Y +S+ ED
Sbjct: 199 TLDRETQSAHHLVL---TALDGGDP-PRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWN 145
VP GT + V A+D D G+NS+++++
Sbjct: 255 VPPGTSILRVKATDQDEGINSEITYS 280
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
PL + T+ + D NDN P+F S Y + +PE+ G + VSASD D G N ++S++
Sbjct: 431 PLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGPNGRVSYS 490
Query: 146 ELEPNGLFSSDL 157
L +SDL
Sbjct: 491 ------LIASDL 496
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFS 154
+++ED ND+ P F + +L I E V +G + SA D D+ +NS LS +L PN FS
Sbjct: 121 VVIEDVNDHAPQFQKDEINLEISESVSLGMGTILESAEDPDISMNS-LSKYQLSPNEYFS 179
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 68 EEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQ 127
E + + +E K +GS L C + V D+NDN+P ++ S I ED P G VV
Sbjct: 313 ERYTMNIE-AKDRGS----LSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVA 367
Query: 128 VVSASDADLGVNSKL 142
+ D D G N ++
Sbjct: 368 LFKTRDRDSGENGEV 382
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 65 LRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP--IFPV-----SQYSLSIP 117
LRT E L+ + +GS P L + ++V D+NDN P ++P S ++P
Sbjct: 525 LRTFELTLQA---RDQGS-PA-LSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVP 579
Query: 118 EDVPVGTVVQVVSASDADLGVNSKLSWNELEPN--GLFSSDLRVEWV 162
G +V V A DAD G N+ LS++ ++ + GLFS LR V
Sbjct: 580 RAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLFSLGLRTGEV 626
>sp|Q5DRC4|PCDB9_PANTR Protocadherin beta-9 OS=Pan troglodytes GN=PCDHB9 PE=3 SV=1
Length = 797
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 61 LKRAL-RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L +AL R E+ L + T G +P GT I+V D NDN P F + Y PE+
Sbjct: 196 LDKALDREEQEELSLTLTALDGGSPS-RSGTSTIRIVVLDVNDNAPQFAQALYETQAPEN 254
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVEWVINRS 166
PVG+ + VSA DAD GVN+++S++ + S D+ + IN S
Sbjct: 255 SPVGSRIVKVSAGDADSGVNAEVSYSFFDA----SEDILTTFQINPS 297
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 94 TIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPN 150
T+ V D NDN P F + Y+L + E+ V VS +D D G N++++++ L P
Sbjct: 438 TLQVSDVNDNAPAFTQTSYTLFVRENNSPALHVGSVSPTDGDSGTNAQVTYSLLPPQ 494
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 85 GPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSK 141
G L C I V D NDN P +S S S+ E+ P G V+ V D D G N K
Sbjct: 325 GGLSARCTVLIKVLDSNDNPPELIISSLSNSVAENSP-GIVLAVFKIKDRDSGENGK 380
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLF--- 153
V D ND++P+F + L I E+ GT ++ A D D G NS ++ + PN F
Sbjct: 123 VRDINDHSPVFRHKEMVLKISENTAEGTAFRLERAQDPDEGHNSIQNYT-ISPNSFFHIK 181
Query: 154 --SSD---LRVEWVINRSVDQHTNK 173
SD + E V+++++D+ +
Sbjct: 182 ISGSDEGMIYPELVLDKALDREEQE 206
>sp|Q9Y5F8|PCDGJ_HUMAN Protocadherin gamma-B7 OS=Homo sapiens GN=PCDHGB7 PE=2 SV=1
Length = 929
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
TL R ++ H + T G +P P GT I+V D NDN P+F Y +S+ ED
Sbjct: 199 TLDRETQSAHHLVL---TALDGGDP-PRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWN 145
VP GT + V A+D D G+NS+++++
Sbjct: 255 VPPGTSILRVKATDQDEGINSEITYS 280
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
PL + T+ + D NDN P+F S Y + +PE+ G + VSASD D G+N ++S++
Sbjct: 431 PLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYS 490
Query: 146 ELEPNGLFSSDL 157
L +SDL
Sbjct: 491 ------LIASDL 496
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFS 154
+++ED ND+ P F + +L I E V +G + SA D D+ +NS LS +L PN FS
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNS-LSKYQLSPNEYFS 179
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 68 EEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQ 127
E + + +E K +GS L C + V D+NDN+P ++ S I ED P G VV
Sbjct: 313 ERYTINIE-AKDRGS----LSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVA 367
Query: 128 VVSASDADLGVNSKL 142
+ D D G N ++
Sbjct: 368 LFKTRDQDSGENGEV 382
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 65 LRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP--IFPV-----SQYSLSIP 117
LRT E L+ + +GS P L + ++V D+NDN P ++P S ++P
Sbjct: 525 LRTFELTLQA---RDQGS-PA-LSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVP 579
Query: 118 EDVPVGTVVQVVSASDADLGVNSKLSWNELEPN--GLFSSDLRVEWV 162
G +V V A DAD G N+ LS++ ++ + GLFS LR V
Sbjct: 580 RAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLFSLGLRTGEV 626
>sp|Q9Y5E9|PCDBE_HUMAN Protocadherin beta-14 OS=Homo sapiens GN=PCDHB14 PE=2 SV=1
Length = 798
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 61 LKRALRTE-EHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L RAL E E L++ T G +P P GT I V D NDN P FP S Y + +PED
Sbjct: 196 LDRALDYEQEAELRLTLTAVDGGSP-PKSGTTLVLIKVLDINDNAPEFPQSLYEVQVPED 254
Query: 120 VPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVEWVIN 164
P+G+ + +SA D D G K+S+ S D+R + IN
Sbjct: 255 RPLGSWIATISAKDLDAGNYGKISYTFFHA----SEDIRKTFEIN 295
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 92 NTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPN 150
N T+++ D NDN P F + Y+L + E+ + VSA+D D G N++++++ L P
Sbjct: 436 NITVLLSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVNYSLLPPQ 494
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLF- 153
+ V+D ND++P F + + I E VG + SA D D+G NS ++ + PN F
Sbjct: 121 LCVKDINDHSPTFLDKEILIKISEGTTVGATFLMESAQDLDVGSNSLQNYT-ISPNSHFY 179
Query: 154 -----SSDLRV--EWVINRSVD 168
SSD ++ E V++R++D
Sbjct: 180 IKIPDSSDRKIYPELVLDRALD 201
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 80 KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVN 139
+ ++ G L G C + V D NDN P +S + IPE+ T+V + S D D G N
Sbjct: 320 QATDGGGLSGKCTLLVKVMDINDNPPEVTISSITKRIPENAS-ETLVALFSILDQDSGDN 378
Query: 140 SKL 142
++
Sbjct: 379 GRM 381
>sp|Q86UP0|CAD24_HUMAN Cadherin-24 OS=Homo sapiens GN=CDH24 PE=1 SV=1
Length = 819
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 67 TEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVV 126
T+E +L V K G + G L G+ T+ + D NDN P FP S Y S+ E GT+V
Sbjct: 219 TQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTLV 278
Query: 127 QVVSASDADLGVNSKLSWNELEPNG 151
+ A D DLG N+ ++++ L+ G
Sbjct: 279 GRLRAQDPDLGDNALMAYSILDGEG 303
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKL 142
PL I V+D NDN PIFP+ Y ++PE VGT V V+A DAD G ++KL
Sbjct: 129 PLEPPSEFIIKVQDINDNPPIFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKL 188
Query: 143 SWNELEPNGLFSSD 156
+ L+ FS D
Sbjct: 189 VYTVLDGLPFFSVD 202
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 85 GPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
GP + + V+D + P F + Y L++PE+ GT+V +SA+D D
Sbjct: 353 GPFKDVASVRVAVQDAPEP-PAFTQAAYHLTVPENKAPGTLVGQISAADLD 402
>sp|Q9ULB4|CADH9_HUMAN Cadherin-9 OS=Homo sapiens GN=CDH9 PE=2 SV=2
Length = 789
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 59 GTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
G +K AL E + V K G G L GT I + D N+N P FP S Y
Sbjct: 215 GIIKTALPDMSRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNNNPPRFPQSTYQ 274
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNG 151
+ PE VP+GT + + A+D D+G N+++ ++ E +G
Sbjct: 275 FNSPESVPLGTHLGRIKANDPDVGENAEMEYSIAEGDG 312
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 56 KNVGTLKRA--LRTEEHWLKVENTKHKGSNPGPLVGTCNTTII-VEDQNDNNPIFPVSQY 112
+N G + A L EE L + K G V + II + D NDN P F Y
Sbjct: 105 ENTGDIHAAKKLDREEKSLYILRAKAIDRKTGRQVEPESEFIIKIHDINDNEPKFTKDLY 164
Query: 113 SLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFSSD 156
+ S+PE VGT V V+A+DAD G ++K+ ++ L+ FS D
Sbjct: 165 TASVPEMSGVGTSVIQVTATDADDANYGNSAKVVYSILQGQPYFSVD 211
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNP-------GPLVGTCNTTIIVEDQNDNNPIFPVSQY 112
T+K+ L E L ++P GP T I VED D P+F Y
Sbjct: 330 TVKQNLDFENQMLYTLRVDASNTHPDPRFLHLGPFKDTAVVKISVEDI-DEPPVFTKVSY 388
Query: 113 SLSIPEDVPVGTVVQVVSASDAD 135
+ + EDV G+++ V+A D D
Sbjct: 389 LIEVDEDVKEGSIIGQVTAYDPD 411
>sp|Q9Y5G2|PCDGE_HUMAN Protocadherin gamma-B2 OS=Homo sapiens GN=PCDHGB2 PE=2 SV=1
Length = 931
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 50 PTTRLYKNVGTLKRALRTEEHWL-KVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFP 108
P R Y + LK +L EEH L ++ T G +P P GT I V D NDN P+F
Sbjct: 186 PDGRKYPEL-ILKHSLDREEHSLHQLVLTAVDGGDP-PQSGTTQIRIKVTDANDNPPVFS 243
Query: 109 VSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145
Y +++ EDVP G V V+A+D D G+N++++++
Sbjct: 244 QDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYS 280
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 44 AKFIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDN 103
AKFI +++ Y + T R E + T G P PL + T+ + D NDN
Sbjct: 390 AKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKP-PLSSSIIVTLHISDVNDN 448
Query: 104 NPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVEWVI 163
P+F + Y + + E+ P G + +SASD DLG + ++S++ + +SDL+ ++
Sbjct: 449 APVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYS------IVASDLKPREIL 502
Query: 164 N 164
+
Sbjct: 503 S 503
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 80 KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVN 139
+ +PG L C+ + + D ND P V+ S +PED P GTV+ ++ D D G N
Sbjct: 320 EAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGEN 379
Query: 140 SKL 142
++
Sbjct: 380 GEV 382
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 94 TIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
+IV+D NDN P+F ++ +L I E GT + A D+D+G NS
Sbjct: 120 AVIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNS 166
>sp|Q5DWV1|CAD20_RAT Cadherin-20 OS=Rattus norvegicus GN=Cdh20 PE=2 SV=1
Length = 801
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 48 ANPTTRLYKNVGTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQND 102
P + G ++ AL +E++ + K G G L GT I + D ND
Sbjct: 210 GQPYFSVDSKTGIIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVND 269
Query: 103 NNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVE 160
N P FP Y +S+ E PV + V V A D D G+N+++ + ++ +G + D+ +
Sbjct: 270 NPPRFPQKHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDINTD 327
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNP---------GPLVGTCNTTIIVEDQNDNNPIFPVS 110
T+K+ L E K K +GSNP GP T IIVED D P+F
Sbjct: 336 TVKKPLSFESK--KSYTLKVEGSNPHVEMRFLNLGPFQDTTTVHIIVEDV-DEPPVFEPR 392
Query: 111 QYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
Y + +PEDV +GT +Q++SA D D+ NS
Sbjct: 393 FYFVEVPEDVTIGTTIQIISAKDPDMTNNS 422
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
F + TT + L R R + + L+ + + P + I ++D NDN P
Sbjct: 107 FTIDDTTGDIHAIQRLDREERAQ-YTLRAQALDRRTGRP--MEPESEFIIKIQDINDNEP 163
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFSSD 156
F Y ++PE PVGT V V+A+DAD G ++++ ++ L+ FS D
Sbjct: 164 KFLDGPYVATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVD 217
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 66 RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTV 125
R E W + + +NP VG+ TI V D NDN P FP Y I E+ G +
Sbjct: 454 REEFSWHNITVLAMEMNNPSQ-VGSVAATIKVLDVNDNAPEFP-RFYEAFICENAKAGQL 511
Query: 126 VQVVSASDADLGVNSKLSWNELEPNG 151
+Q VSA D D N + + L P
Sbjct: 512 IQTVSAVDQDDPHNGQHFYYSLAPEA 537
>sp|Q9Z0M3|CAD20_MOUSE Cadherin-20 OS=Mus musculus GN=Cdh20 PE=2 SV=1
Length = 801
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 48 ANPTTRLYKNVGTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQND 102
P + G ++ AL +E++ + K G G L GT I + D ND
Sbjct: 210 GQPYFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVND 269
Query: 103 NNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVE 160
N P FP Y +S+ E P+ + V V A D D G+N+++ + ++ +G + D+ +
Sbjct: 270 NPPRFPQKHYQMSVLESAPISSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDINTD 327
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNP---------GPLVGTCNTTIIVEDQNDNNPIFPVS 110
T+K+ L E K K +GSNP GP T I VED D P+F
Sbjct: 336 TVKKPLSFESK--KSYTLKVEGSNPHLEMRFLNLGPFQDTTTVHISVEDV-DEPPVFEPG 392
Query: 111 QYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
Y + +PEDV +GT +Q++SA D D+ NS
Sbjct: 393 FYFVEVPEDVTIGTTIQIISAKDPDVTNNS 422
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
F + TT + L R R + + L+ + + P + I ++D NDN P
Sbjct: 107 FTIDDTTGDIHAIQRLDREERAQ-YTLRAQALDRRTGRP--MEPESEFIIKIQDINDNEP 163
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFSSD 156
F Y ++PE PVGT V V+A+DAD G ++++ ++ L+ FS D
Sbjct: 164 KFLDGPYIATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVD 217
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 66 RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTV 125
R E W + + +NP VG+ TI V D NDN P FP Y I E+ G +
Sbjct: 454 REEFSWHNITVLAMEMNNPSQ-VGSVAVTIKVLDVNDNAPEFP-RFYEAFICENAKAGQL 511
Query: 126 VQVVSASDADLGVNSKLSWNELEPNG 151
+Q VSA D D N + + L P
Sbjct: 512 IQTVSAVDQDDPHNGQHFYYSLAPEA 537
>sp|Q5RJH3|CAD12_MOUSE Cadherin-12 OS=Mus musculus GN=Cdh12 PE=2 SV=1
Length = 794
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 59 GTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
G ++ AL +E + + K G G L GT I + D NDN P FP S +
Sbjct: 216 GVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTVVNITLTDVNDNPPRFPKSIFH 275
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNG 151
L +PE PVG+ + + A D D G N+++ +N + +G
Sbjct: 276 LKVPESSPVGSAIGRIRAVDPDFGKNAEIEYNIVPGDG 313
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 61 LKRALRTE---EHWLKVENT----KHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYS 113
LK+ L E + KVE + H+ + GP T I V D D P+F Y+
Sbjct: 332 LKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDV-DEPPVFSKPLYT 390
Query: 114 LSIPEDVPVGTVVQVVSASDADLG 137
+ + ED PVGT++ V+A D D+G
Sbjct: 391 MEVYEDTPVGTIIGAVTAQDLDVG 414
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKL 142
PL I V+D NDN P F Y S+PE PVG V V A+DAD G ++++
Sbjct: 139 PLEPESEFIIKVQDINDNEPKFLDGPYVASVPEMSPVGAYVLQVKATDADDPTYGNSARV 198
Query: 143 SWNELEPNGLFSSD 156
++ L+ FS D
Sbjct: 199 VYSILQGQPYFSID 212
>sp|Q9HBT6|CAD20_HUMAN Cadherin-20 OS=Homo sapiens GN=CDH20 PE=2 SV=2
Length = 801
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 48 ANPTTRLYKNVGTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQND 102
P + G ++ AL +E++ + K G G L GT I + D ND
Sbjct: 210 GQPYFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVND 269
Query: 103 NNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVE 160
N P FP Y +S+ E P+ + V V A D D G+N+++ + ++ +G + D+ +
Sbjct: 270 NPPRFPQKHYQMSVLESAPISSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDISTD 327
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 60 TLKRALRTEEHWLKVENTKHKGSNP---------GPLVGTCNTTIIVEDQNDNNPIFPVS 110
T+K+ L E K K +G+NP GP T I VED D P+F
Sbjct: 336 TVKKPLSFESK--KSYTLKVEGANPHLEMRFLNLGPFQDTTTVHISVEDV-DEPPVFEPG 392
Query: 111 QYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
Y + +PEDV +GT +Q++SA D D+ NS
Sbjct: 393 FYFVEVPEDVAIGTTIQIISAKDPDVTNNS 422
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
F + TT + L R R + + L+ + + P + I ++D NDN P
Sbjct: 107 FTIDDTTGDIHAIQRLDREERAQ-YTLRAQALDRRTGRP--MEPESEFIIKIQDINDNEP 163
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFSSD 156
F Y ++PE PVGT V V+A+DAD G ++++ ++ L+ FS D
Sbjct: 164 KFLDGPYVATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVD 217
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 66 RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTV 125
R E W + + +NP VG+ TI V D NDN P FP Y + E+ G +
Sbjct: 454 REEFSWHNITVLAMEMNNPSQ-VGSVPVTIKVLDVNDNAPEFP-RFYEAFVCENAKAGQL 511
Query: 126 VQVVSASDADLGVNSKLSWNELEPNG 151
+Q VSA D D N + + L P
Sbjct: 512 IQTVSAVDQDDPRNGQHFYYSLAPEA 537
>sp|P55287|CAD11_HUMAN Cadherin-11 OS=Homo sapiens GN=CDH11 PE=1 SV=2
Length = 796
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 48 ANPTTRLYKNVGTLKRAL-----RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQND 102
P + G ++ AL +E + V K G + G L GT TI + D ND
Sbjct: 204 GQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDVND 263
Query: 103 NNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVEWV 162
N P FP S Y +S+ E G V V A D D+G N +++N ++ +G+ S ++ ++
Sbjct: 264 NPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGENGLVTYNIVDGDGMESFEITTDYE 323
Query: 163 INRSV 167
V
Sbjct: 324 TQEGV 328
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKL 142
PL + V+D NDN P F Y ++PE VGT V V+ASDAD G ++KL
Sbjct: 138 PLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQVTASDADDPTYGNSAKL 197
Query: 143 SWNELEPNGLFS 154
++ LE FS
Sbjct: 198 VYSILEGQPYFS 209
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 85 GPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
GP T I VED D P+F Y + E+ GTVV V A D D NS + +
Sbjct: 362 GPFKDTVTVKISVEDA-DEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPD-AANSPIRY 419
Query: 145 N 145
+
Sbjct: 420 S 420
>sp|Q5DRB8|PCDG2_PANTR Protocadherin gamma-A2 OS=Pan troglodytes GN=PCDHGA2 PE=3 SV=1
Length = 932
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 61 LKRAL-RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119
L+RAL R EE + G +P L GT + V D NDN P+F +Y +SIPE+
Sbjct: 196 LERALDREEEAVHHLVLVASDGGDP-VLSGTSRICVKVLDANDNAPVFTQPEYRISIPEN 254
Query: 120 VPVGTVVQVVSASDADLGVNSKLSW 144
PVGT + V+A+DAD G +++ +
Sbjct: 255 TPVGTRILTVTATDADEGYYAQVVY 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 63 RALRTEEH-WLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVP 121
RAL E+ + + T G NP L + + V D NDN P F + YS IPE+ P
Sbjct: 408 RALDREQFSFYNITLTAKDGGNPS-LSTDAHILLQVADINDNAPAFSRTSYSTYIPENNP 466
Query: 122 VGTVVQVVSASDADLGVNSKLSWNELE 148
G V V+A D D N+ ++++ +E
Sbjct: 467 RGASVFSVTAHDPDSNDNAHVTYSFVE 493
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSD 156
+ D NDN P F V + L I E G + + +A DAD+G N+ L L PN FS D
Sbjct: 123 ITDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENA-LQKYALNPNDHFSLD 181
Query: 157 LRV--------EWVINRSVDQH 170
+R E V+ R++D+
Sbjct: 182 VRSGADGNKYPELVLERALDRE 203
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 85 GP-LVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
GP L+ + V D NDN P F ++ + S+ ED GT++ + + D D G N+
Sbjct: 324 GPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHDRDSGQNA 380
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 65 LRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP--IFPVSQYSLSI-----P 117
LR + W+ ++ NP PL + ++ V DQNDN P ++P S P
Sbjct: 525 LRDLQVWVIARDS----GNP-PLSSNVSLSLFVLDQNDNPPEILYPAFPTDGSTGVELAP 579
Query: 118 EDVPVGTVVQVVSASDADLGVNSKLSWNELEPN--GLFSSDL 157
G +V V A D D G N+ LS++ L+ + GLFS L
Sbjct: 580 RSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASEPGLFSVGL 621
>sp|Q6PFX6|CAD24_MOUSE Cadherin-24 OS=Mus musculus GN=Cdh24 PE=2 SV=1
Length = 781
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 67 TEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVV 126
T+E +L V K G + G L G+ T+ + D NDN P FP S Y S+ E GT+V
Sbjct: 219 TQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTLV 278
Query: 127 QVVSASDADLGVNSKLSWNELEPNG 151
+ A D DLG N+ ++++ L G
Sbjct: 279 GRLKAQDPDLGDNALVAYSILNGEG 303
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKL 142
PL I V+D NDN P+FP+ Y ++PE VGT V V+A DAD G ++KL
Sbjct: 129 PLEPPSEFIIKVQDINDNPPVFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKL 188
Query: 143 SWNELEPNGLFSSD 156
+ L+ FS D
Sbjct: 189 VYTVLDGLPFFSVD 202
Score = 34.3 bits (77), Expect = 0.41, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 85 GPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
GP + + V+D + P F + Y L++PE+ GT+V +SASD D
Sbjct: 353 GPFKDVASVRVTVQDAPEP-PAFTQATYHLAVPENKAPGTLVGQISASDLD 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,050,439
Number of Sequences: 539616
Number of extensions: 2759803
Number of successful extensions: 5907
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 4180
Number of HSP's gapped (non-prelim): 1676
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)