Query psy8644
Match_columns 173
No_of_seqs 190 out of 1160
Neff 8.5
Searched_HMMs 46136
Date Sat Aug 17 00:06:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00031 CA Cadherin repeat dom 100.0 1.8E-26 3.9E-31 174.5 21.4 151 14-172 3-170 (199)
2 KOG4289|consensus 99.9 1.9E-26 4.2E-31 206.2 16.6 155 10-172 269-442 (2531)
3 KOG4289|consensus 99.9 5.4E-26 1.2E-30 203.3 16.8 156 8-171 680-851 (2531)
4 KOG1219|consensus 99.9 2.7E-24 5.9E-29 197.7 16.8 146 19-172 966-1126(4289)
5 KOG1219|consensus 99.9 2.1E-23 4.5E-28 192.1 17.3 143 20-173 2092-2246(4289)
6 smart00112 CA Cadherin repeats 99.6 4.5E-15 9.8E-20 96.6 9.9 69 29-105 2-79 (79)
7 KOG1834|consensus 99.6 1.6E-13 3.5E-18 117.1 15.2 150 16-172 40-215 (952)
8 PF00028 Cadherin: Cadherin do 99.5 9.3E-14 2E-18 93.1 9.2 61 112-172 1-64 (93)
9 PF00028 Cadherin: Cadherin do 99.4 1.4E-11 3E-16 82.5 11.2 78 14-98 2-93 (93)
10 cd00031 CA Cadherin repeat dom 99.0 1.7E-09 3.7E-14 81.4 8.9 62 111-172 1-65 (199)
11 smart00112 CA Cadherin repeats 98.4 7.3E-07 1.6E-11 57.6 4.5 41 132-172 1-44 (79)
12 PF08266 Cadherin_2: Cadherin- 97.9 2.1E-05 4.6E-10 51.8 5.0 60 111-171 2-66 (84)
13 KOG1834|consensus 96.3 0.016 3.4E-07 51.1 7.0 68 25-100 170-245 (952)
14 PF08266 Cadherin_2: Cadherin- 95.8 0.031 6.7E-07 36.7 5.2 53 13-69 3-66 (84)
15 PF08758 Cadherin_pro: Cadheri 95.8 0.034 7.4E-07 37.0 5.4 61 104-169 3-64 (90)
16 smart00736 CADG Dystroglycan-t 93.7 1.3 2.9E-05 29.4 9.8 57 37-102 30-96 (97)
17 PF08758 Cadherin_pro: Cadheri 92.9 1.9 4E-05 28.6 9.4 55 23-82 23-81 (90)
18 TIGR00845 caca sodium/calcium 76.5 54 0.0012 31.0 11.5 29 91-120 515-543 (928)
19 TIGR01965 VCBS_repeat VCBS rep 71.6 28 0.00061 23.5 10.2 80 25-119 4-97 (99)
20 TIGR03660 T1SS_rpt_143 T1SS-14 71.0 35 0.00077 24.4 7.4 57 52-119 65-127 (137)
21 PF05345 He_PIG: Putative Ig d 63.1 27 0.00059 20.1 5.2 31 44-78 14-46 (49)
22 PF09100 Qn_am_d_aIV: Quinohem 58.4 64 0.0014 22.9 7.1 54 47-105 74-132 (133)
23 KOG3597|consensus 44.0 50 0.0011 28.5 4.9 56 89-145 24-79 (442)
24 PF03160 Calx-beta: Calx-beta 35.9 1.2E+02 0.0026 19.6 5.0 48 94-145 2-49 (100)
25 PF03413 PepSY: Peptidase prop 32.8 86 0.0019 18.1 3.5 11 153-163 51-61 (64)
26 cd05760 Ig2_PTK7 Second immuno 29.0 1.4E+02 0.0031 18.2 6.1 45 46-99 31-76 (77)
27 PF02494 HYR: HYR domain; Int 28.9 1.3E+02 0.0028 18.8 4.1 22 71-97 60-81 (81)
28 PF03646 FlaG: FlaG protein; 24.4 45 0.00097 22.4 1.3 18 153-170 59-76 (107)
29 PF12461 DUF3688: Protein of u 21.6 92 0.002 20.6 2.3 23 141-163 61-85 (91)
No 1
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.95 E-value=1.8e-26 Score=174.45 Aligned_cols=151 Identities=34% Similarity=0.502 Sum_probs=132.1
Q ss_pred eeEEeccCCC--cE---EEEcCCCCCCCCeEEEEE------eeEEEECCCcEEEEecCCCCCCcCccc---EEEEEEEeC
Q psy8644 14 HWSISKLLES--RY---LHLRPKSGMYAPAFTFSI------AKFIANPTTRLYKNVGTLKRALRTEEH---WLKVENTKH 79 (173)
Q Consensus 14 ~~~i~e~~~~--~v---~~~d~d~~~~n~~i~Ysi------~~F~Id~~tG~i~~~~~~~~~LD~E~~---~l~v~a~dd 79 (173)
++.++|+... .+ .+.|+|.+. ++.+.|+| .+|+|++.+|.|++. +.||||.. .|.|+|+ |
T Consensus 3 ~~~i~En~~~g~~v~~~~a~D~D~~~-~~~~~y~i~~~~~~~~F~i~~~tG~l~~~----~~lD~e~~~~~~l~v~a~-D 76 (199)
T cd00031 3 SVSVPENAPPGTVVGTVSATDPDSGE-NGRVTYSILGGNEDGLFSIDPNTGVITTT----KPLDREEQSEYTLTVVAS-D 76 (199)
T ss_pred EEEEeCCCCCCCEEEEEEEECCCCCC-CceEEEEEeCCCCcccEEEeCCCCEEEEC----CCCCCcCCceEEEEEEEE-E
Confidence 4566665554 33 466888886 78999999 499999999999999 99999997 8999999 6
Q ss_pred CCCCCCCceeEEEEEEEEeeCCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEE-eCCC-CCcEEEEC
Q psy8644 80 KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN-ELEP-NGLFSSDL 157 (173)
Q Consensus 80 ~g~~p~~~~~~~~v~I~V~d~Ndn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~-~~~~-~~~F~Id~ 157 (173)
.|. | .+++.+.+.|.|.|+|||+|.|....|.+.|.|+.++|+.++++.|+|+|.+.++.++|+ .+.. .++|.|++
T Consensus 77 ~g~-~-~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~i~~ 154 (199)
T cd00031 77 GGG-P-PLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTYSILSGNDKELFSIDP 154 (199)
T ss_pred CCc-C-cceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeCCCCCCEEEEeC
Confidence 677 6 677999999999999999999999999999999999999999999999999999999999 3333 38999999
Q ss_pred CCCEEE-ecCCccccc
Q psy8644 158 RVEWVI-NRSVDQHTN 172 (173)
Q Consensus 158 ~tG~i~-~~~LD~E~~ 172 (173)
.+|.|. .+.||||..
T Consensus 155 ~~G~i~~~~~ld~e~~ 170 (199)
T cd00031 155 NTGIITLAKPLDREEK 170 (199)
T ss_pred CceEEEeCCccCCccC
Confidence 999997 779999975
No 2
>KOG4289|consensus
Probab=99.94 E-value=1.9e-26 Score=206.18 Aligned_cols=155 Identities=27% Similarity=0.368 Sum_probs=137.1
Q ss_pred eeeeee--EEecc--CCCcEE---EEcCCCCCCCCeEEEEE------eeEEEECCCcEEEEecCCCCCCcCccc---EEE
Q psy8644 10 YEYNHW--SISKL--LESRYL---HLRPKSGMYAPAFTFSI------AKFIANPTTRLYKNVGTLKRALRTEEH---WLK 73 (173)
Q Consensus 10 ~~~~~~--~i~e~--~~~~v~---~~d~d~~~~n~~i~Ysi------~~F~Id~~tG~i~~~~~~~~~LD~E~~---~l~ 73 (173)
||..+| ++.|+ .+..++ |.|.|++. |+.|+|++ ..|.||+++|.|++. .+||||.. +|.
T Consensus 269 FEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~-Nani~Yrl~eg~~~~~f~in~rSGvI~T~----a~lDRE~~~~y~L~ 343 (2531)
T KOG4289|consen 269 FEQDEYREELRENLEVGYEVLTVRATDGDSPP-NANIRYRLLEGNAKNVFEINPRSGVISTR----APLDREELESYQLD 343 (2531)
T ss_pred cchhHHHHHHhhccccCceEEEEEeccCCCCC-CCceEEEecCCCccceeEEcCccceeecc----CccCHHhhhheEEE
Confidence 444555 34454 444454 44667774 99999999 899999999999999 99999998 999
Q ss_pred EEEEeCCCCCCCCceeEEEEEEEEeeCCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEE--eCCCCC
Q psy8644 74 VENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN--ELEPNG 151 (173)
Q Consensus 74 v~a~dd~g~~p~~~~~~~~v~I~V~d~Ndn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~--~~~~~~ 151 (173)
|.|+ |.|. | +...++.|.|+|.|+|||+|+|....|.++|.|+..++++|++|+|+|.|.|.|+.|.|+ .++..+
T Consensus 344 VeAs-DqG~-~-pgp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G 420 (2531)
T KOG4289|consen 344 VEAS-DQGR-P-PGPRTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRG 420 (2531)
T ss_pred EEec-cCCC-C-CCCceEEEEEEEEecCCCCccccccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccCccc
Confidence 9999 9998 5 555599999999999999999999999999999999999999999999999999999999 889999
Q ss_pred cEEEECCCCEEE-ecCCccccc
Q psy8644 152 LFSSDLRVEWVI-NRSVDQHTN 172 (173)
Q Consensus 152 ~F~Id~~tG~i~-~~~LD~E~~ 172 (173)
.|.||..||++. ..+||+|..
T Consensus 421 ~f~id~~tGel~vv~plD~e~~ 442 (2531)
T KOG4289|consen 421 QFYIDSLTGELDVVEPLDFENS 442 (2531)
T ss_pred cEEEecccceEEEeccccccCC
Confidence 999999999997 899999964
No 3
>KOG4289|consensus
Probab=99.94 E-value=5.4e-26 Score=203.32 Aligned_cols=156 Identities=26% Similarity=0.361 Sum_probs=138.5
Q ss_pred cceeeeeeEEec----cCCCcEEEE---cCCCCCCCCeEEEEE--eeEEEECCCcEEEEecCCCCCCcCccc---EEEEE
Q psy8644 8 KGYEYNHWSISK----LLESRYLHL---RPKSGMYAPAFTFSI--AKFIANPTTRLYKNVGTLKRALRTEEH---WLKVE 75 (173)
Q Consensus 8 ~~~~~~~~~i~e----~~~~~v~~~---d~d~~~~n~~i~Ysi--~~F~Id~~tG~i~~~~~~~~~LD~E~~---~l~v~ 75 (173)
+.|.-.||+++. |++++|+.+ |.|.|. |++|+|-+ +.|+||+++|.+++. ..||||.+ .+.+.
T Consensus 680 pvFqs~pfTvsI~e~rP~G~tvvtlsasd~D~ge-NARI~y~led~~Frid~dsg~i~t~----~~ld~edqvtytl~it 754 (2531)
T KOG4289|consen 680 PVFQSSPFTVSINEDRPLGTTVVTLSASDEDTGE-NARITYILEDEAFRIDPDSGAIYTQ----AELDYEDQVTYTLAIT 754 (2531)
T ss_pred cccccCCeeEeeccCCcCCceeEEEecccCCCCc-cceEEEEecccceeecCCCCceEEe----eeeecccceeeEeeee
Confidence 345556776553 666776655 556675 99999966 889999999999999 99999988 88899
Q ss_pred EEeCCCCCCCCceeEEEEEEEEeeCCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEE---eCCCCCc
Q psy8644 76 NTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN---ELEPNGL 152 (173)
Q Consensus 76 a~dd~g~~p~~~~~~~~v~I~V~d~Ndn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~---~~~~~~~ 152 (173)
|. |+|. | ++..+++|.|.|.|+|||+|+|....|.++|.|++|++|.|++|+|+|+|.|+|+.+.|. ..++.+.
T Consensus 755 A~-D~~~-p-q~adtttveV~v~diNDnaPqf~assyt~sV~Ed~Pv~TsvlQVSatDaD~g~Ng~v~y~~qg~~d~p~~ 831 (2531)
T KOG4289|consen 755 AR-DNGI-P-QKADTTTVEVLVNDINDNAPQFLASSYTGSVFEDAPVFTSVLQVSATDADSGPNGRVYYTFQGGDDGPGD 831 (2531)
T ss_pred ec-CCCC-C-CcCccEEEEEEeecccccCcccchhhceeEeecCCCCcceEEEEEEeccCCCCCceEEEEecCCCCCCCc
Confidence 99 9999 8 899999999999999999999999999999999999999999999999999999999999 4456799
Q ss_pred EEEECCCCEEE-ecCCcccc
Q psy8644 153 FSSDLRVEWVI-NRSVDQHT 171 (173)
Q Consensus 153 F~Id~~tG~i~-~~~LD~E~ 171 (173)
|.|+|++|.|+ .+.||||.
T Consensus 832 F~IEptSGviRtl~rLdRE~ 851 (2531)
T KOG4289|consen 832 FYIEPTSGVIRTLRRLDREN 851 (2531)
T ss_pred eEEccCcceeehhhhhcchh
Confidence 99999999997 89999995
No 4
>KOG1219|consensus
Probab=99.92 E-value=2.7e-24 Score=197.75 Aligned_cols=146 Identities=28% Similarity=0.464 Sum_probs=134.5
Q ss_pred ccCCCcEEEE---cCCCCCCCCeEEEEE------eeEEEECCCcEEEEecCCCCCCcCccc---EEEEEEEeCCCCCCCC
Q psy8644 19 KLLESRYLHL---RPKSGMYAPAFTFSI------AKFIANPTTRLYKNVGTLKRALRTEEH---WLKVENTKHKGSNPGP 86 (173)
Q Consensus 19 e~~~~~v~~~---d~d~~~~n~~i~Ysi------~~F~Id~~tG~i~~~~~~~~~LD~E~~---~l~v~a~dd~g~~p~~ 86 (173)
.|.++.+..+ |.|+|. .+.+.|+| +.|+||..+|.|++. +.||||.. .|++.|. |.|. + +
T Consensus 966 apiGT~vi~i~A~dedsgl-dg~l~Y~I~~gdg~g~FsId~~tG~irTl----~~lDrE~ks~YwltveA~-D~gt-~-~ 1037 (4289)
T KOG1219|consen 966 APIGTIVIRIQARDEDSGL-DGELSYKIRTGDGDGIFSIDSTTGSIRTL----KALDREKKSSYWLTVEAK-DLGT-V-P 1037 (4289)
T ss_pred CCcceEEEEEEEecCCCCc-cceEEEEEEcCCcceeEEecCCcceEeec----hhhchhhcceEEEEEEEE-ecCC-C-c
Confidence 4556655444 556664 78999999 999999999999999 99999999 9999999 8888 7 8
Q ss_pred ceeEEEEEEEEeeCCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEE--eCCCCCcEEEECCCCEEE-
Q psy8644 87 LVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN--ELEPNGLFSSDLRVEWVI- 163 (173)
Q Consensus 87 ~~~~~~v~I~V~d~Ndn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~--~~~~~~~F~Id~~tG~i~- 163 (173)
+++.+.+.|.|.|+|||+|+|.++.|..+|.|+++.+..|.|+.|+|+|...|+++.|. .|+..+.|.|++.||.|+
T Consensus 1038 ~ssv~~vyI~ieDvNDn~Pq~s~pvy~asI~enSp~~vsivq~ea~D~Dsssn~kLmykI~sGnyq~FF~Id~~TG~iTt 1117 (4289)
T KOG1219|consen 1038 LSSVCEVYIEIEDVNDNVPQFSSPVYYASISENSPETVSIVQAEANDPDSSSNQKLMYKITSGNYQGFFQIDPETGLITT 1117 (4289)
T ss_pred cccceeEEEEEEecCCCCcccCCceEeeeeccCCCCceEEEEeccCCCCcccCcceEEEEccCCccceEEEccccceeee
Confidence 99999999999999999999999999999999999999999999999998899999999 789999999999999998
Q ss_pred ecCCccccc
Q psy8644 164 NRSVDQHTN 172 (173)
Q Consensus 164 ~~~LD~E~~ 172 (173)
.+.||||++
T Consensus 1118 ~r~LDRE~q 1126 (4289)
T KOG1219|consen 1118 IRRLDREKQ 1126 (4289)
T ss_pred ehhhccccc
Confidence 899999986
No 5
>KOG1219|consensus
Probab=99.91 E-value=2.1e-23 Score=192.06 Aligned_cols=143 Identities=31% Similarity=0.461 Sum_probs=129.2
Q ss_pred cCCCcEEEEcCCCCCCCCeEEEEE-----eeEEEECCCcEEEEecCCCCCCcCccc---EEEEEEEeCCCCCCCCceeEE
Q psy8644 20 LLESRYLHLRPKSGMYAPAFTFSI-----AKFIANPTTRLYKNVGTLKRALRTEEH---WLKVENTKHKGSNPGPLVGTC 91 (173)
Q Consensus 20 ~~~~~v~~~d~d~~~~n~~i~Ysi-----~~F~Id~~tG~i~~~~~~~~~LD~E~~---~l~v~a~dd~g~~p~~~~~~~ 91 (173)
...++++.+.+.+.. ..+|.|+| ..|++|..||.|.+. .+||||.. .|.|+|+ |.+. ++.+++
T Consensus 2092 tv~spvv~vqa~s~l-~~kv~YsIldg~~slFtvnf~TG~i~v~----~pLd~ea~t~h~l~ieAt-d~~~---p~~Aea 2162 (4289)
T KOG1219|consen 2092 TVSSPVVHVQAASPL-GLKVTYSILDGNTSLFTVNFTTGVILVL----IPLDREASTLHELLIEAT-DAGI---PLSAEA 2162 (4289)
T ss_pred ccccceeEEeecCCc-CCceEEEEecCCcceEEEecccceEEec----cccccccccceEEEEEEe-ccCC---Ccceee
Confidence 445667777765553 55699999 899999999999999 99999998 9999999 9998 599999
Q ss_pred EEEEEEeeCCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEE-e--CCCCCcEEEECCCCEEE-ecCC
Q psy8644 92 NTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN-E--LEPNGLFSSDLRVEWVI-NRSV 167 (173)
Q Consensus 92 ~v~I~V~d~Ndn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~-~--~~~~~~F~Id~~tG~i~-~~~L 167 (173)
.|.|.|.|+|||||.|.+..|..+++|++++|+.|.+|.|+|.|. |..+.|+ . .+....|+|++.||.|+ .+.|
T Consensus 2163 ~VeIiV~dIndn~PvFeqlsYt~sisE~s~igt~viqilATdsDs--n~~isYsl~g~s~~sk~f~In~sTG~it~~g~l 2240 (4289)
T KOG1219|consen 2163 KVEIIVGDINDNPPVFEQLSYTISISENSKIGTKVIQILATDSDS--NREISYSLEGNSEISKPFRINVSTGWITVAGKL 2240 (4289)
T ss_pred EEEEEecccCCCCchhheeeEEEEccCCCccCceEEEEEeccCCC--CCceEEEeecCCccccceEEecccceEEEeeec
Confidence 999999999999999999999999999999999999999999996 8999999 3 34579999999999997 8999
Q ss_pred cccccC
Q psy8644 168 DQHTNK 173 (173)
Q Consensus 168 D~E~~~ 173 (173)
|||+++
T Consensus 2241 dyE~~q 2246 (4289)
T KOG1219|consen 2241 DYEENQ 2246 (4289)
T ss_pred Chhhcc
Confidence 999874
No 6
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=99.63 E-value=4.5e-15 Score=96.63 Aligned_cols=69 Identities=39% Similarity=0.536 Sum_probs=62.9
Q ss_pred cCCCCCCCCeEEEEE------eeEEEECCCcEEEEecCCCCCCcCccc---EEEEEEEeCCCCCCCCceeEEEEEEEEee
Q psy8644 29 RPKSGMYAPAFTFSI------AKFIANPTTRLYKNVGTLKRALRTEEH---WLKVENTKHKGSNPGPLVGTCNTTIIVED 99 (173)
Q Consensus 29 d~d~~~~n~~i~Ysi------~~F~Id~~tG~i~~~~~~~~~LD~E~~---~l~v~a~dd~g~~p~~~~~~~~v~I~V~d 99 (173)
|+|.+ .|+.++|+| .+|.|++.+|.|++. ++||||.. .|.|+|. |.|. | ++++.+.|.|+|.|
T Consensus 2 D~D~g-~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~----~~LD~e~~~~y~l~v~a~-D~~~-~-~~~~~~~v~I~V~D 73 (79)
T smart00112 2 DADSG-ENGKVTYSILSGNEDGLFSIDPETGEITTT----KPLDREEQPEYTLTVEAT-DGGG-P-PLSSTATVTVTVLD 73 (79)
T ss_pred CCCCC-cCcEEEEEEecCCCCCEEEEeCCccEEEeC----CccCeeCCCeEEEEEEEE-ECCC-C-CcccEEEEEEEEEE
Confidence 67877 488999999 689999999999988 89999987 9999999 7777 6 79999999999999
Q ss_pred CCCCCC
Q psy8644 100 QNDNNP 105 (173)
Q Consensus 100 ~Ndn~P 105 (173)
+|||+|
T Consensus 74 ~Nd~~P 79 (79)
T smart00112 74 VNDNAP 79 (79)
T ss_pred CCCCCC
Confidence 999998
No 7
>KOG1834|consensus
Probab=99.55 E-value=1.6e-13 Score=117.14 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=117.4
Q ss_pred EEeccCC-----CcEEEEcCCCCC-CCCeE-EEEE-------eeEEEECCCc--EEEEecCCCCCCcCccc---EEEEEE
Q psy8644 16 SISKLLE-----SRYLHLRPKSGM-YAPAF-TFSI-------AKFIANPTTR--LYKNVGTLKRALRTEEH---WLKVEN 76 (173)
Q Consensus 16 ~i~e~~~-----~~v~~~d~d~~~-~n~~i-~Ysi-------~~F~Id~~tG--~i~~~~~~~~~LD~E~~---~l~v~a 76 (173)
.+.|+-+ +++.++|.|..- ..+.| -|.| ..--+|..|| .|+.+ .+||.|.+ +|+|+|
T Consensus 40 vV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq~vPFdavVvdK~TGegvlRaK----~~lDCelqkeytf~iQA 115 (952)
T KOG1834|consen 40 VVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQPVPFDAVVVDKYTGEGVLRAK----EPLDCELQKEYTFTIQA 115 (952)
T ss_pred EEEeCCceEEeCCCeeeecCCCCcccccccceeEecCCCCCceEEEEeccCCceEEeec----CcccccccccceEEEEE
Confidence 4555544 456777776532 23455 4777 3445577775 57777 99999966 999999
Q ss_pred EeCCCCCCC----CceeEEEEEEEEeeCCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCC-CCceEEEE-eCCCC
Q psy8644 77 TKHKGSNPG----PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLG-VNSKLSWN-ELEPN 150 (173)
Q Consensus 77 ~dd~g~~p~----~~~~~~~v~I~V~d~Ndn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g-~n~~v~Y~-~~~~~ 150 (173)
. |+|..|. .++-.++|.|.|.|+|+++|.|..+.|.+.|.|. ++-..|++|.|.|.|.+ ++++|.+. .....
T Consensus 116 y-dCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EG-K~yd~il~veAiD~DCspq~sqIC~YEI~t~d 193 (952)
T KOG1834|consen 116 Y-DCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEG-KVYDSILRVEAIDKDCSPQYSQICEYEITTPD 193 (952)
T ss_pred E-ecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecc-eeeeeeEEEEeecCCCCCcccceeEEEecCCC
Confidence 9 7776441 4677889999999999999999999999999998 57788999999999987 68888777 67788
Q ss_pred CcEEEECCCCEEE-ecCCccccc
Q psy8644 151 GLFSSDLRVEWVI-NRSVDQHTN 172 (173)
Q Consensus 151 ~~F~Id~~tG~i~-~~~LD~E~~ 172 (173)
-+|.|| +.|.|. +.+|.|-+.
T Consensus 194 ~PFaId-n~G~irnTekLny~ke 215 (952)
T KOG1834|consen 194 VPFAID-NDGNIRNTEKLNYTKE 215 (952)
T ss_pred CceEEc-CCCccccccccccccc
Confidence 999997 488887 888988654
No 8
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=99.52 E-value=9.3e-14 Score=93.15 Aligned_cols=61 Identities=41% Similarity=0.688 Sum_probs=57.0
Q ss_pred eEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEE--eCCCCCcEEEECCCCEEE-ecCCccccc
Q psy8644 112 YSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN--ELEPNGLFSSDLRVEWVI-NRSVDQHTN 172 (173)
Q Consensus 112 y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~--~~~~~~~F~Id~~tG~i~-~~~LD~E~~ 172 (173)
|.++|+|++++|+.|+++.|.|+|.+.|+.+.|+ .++..++|.|++.+|.|. .++||||++
T Consensus 1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~ 64 (93)
T PF00028_consen 1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQ 64 (93)
T ss_dssp EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTT
T ss_pred CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccC
Confidence 7899999999999999999999999999999999 555689999999999997 889999986
No 9
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=99.37 E-value=1.4e-11 Score=82.49 Aligned_cols=78 Identities=31% Similarity=0.380 Sum_probs=65.0
Q ss_pred eeEEeccC--CCcE---EEEcCCCCCCCCeEEEEE------eeEEEECCCcEEEEecCCCCCCcCccc---EEEEEEEeC
Q psy8644 14 HWSISKLL--ESRY---LHLRPKSGMYAPAFTFSI------AKFIANPTTRLYKNVGTLKRALRTEEH---WLKVENTKH 79 (173)
Q Consensus 14 ~~~i~e~~--~~~v---~~~d~d~~~~n~~i~Ysi------~~F~Id~~tG~i~~~~~~~~~LD~E~~---~l~v~a~dd 79 (173)
+..++|+. ++.+ .+.|+|.+. |+.+.|+| .+|.|++.+|.|++. ++||||.. .|.|.|+|.
T Consensus 2 ~~~v~E~~~~g~~v~~v~a~D~D~~~-n~~i~y~i~~~~~~~~F~I~~~tg~i~~~----~~LD~E~~~~y~l~v~a~D~ 76 (93)
T PF00028_consen 2 SFSVPENAPPGTVVGQVTATDPDSGP-NSQITYSILGGNPDGLFSIDPNTGEISLK----KPLDRETQSSYQLTVRATDS 76 (93)
T ss_dssp EEEEETTGSTSSEEEEEEEEESSTST-TSSEEEEEEETTSTTSEEEETTTTEEEES----SSSCTTTTSEEEEEEEEEET
T ss_pred EEEEECCCCCCCEEEEEEEEeCCCCC-CceEEEEEecCcccCceEEeeeeeccccc----eecCcccCCEEEEEEEEEEC
Confidence 45677764 4443 566889664 89999999 799999999999999 99999998 999999944
Q ss_pred CCCCCCCceeEEEEEEEEe
Q psy8644 80 KGSNPGPLVGTCNTTIIVE 98 (173)
Q Consensus 80 ~g~~p~~~~~~~~v~I~V~ 98 (173)
.|. | ++++++.|.|+|+
T Consensus 77 ~~~-~-~~~~~~~V~I~V~ 93 (93)
T PF00028_consen 77 GGS-P-PLSSTATVTINVL 93 (93)
T ss_dssp TTS-S-EEEEEEEEEEEEE
T ss_pred CCC-C-CCEEEEEEEEEEC
Confidence 367 7 8999999999985
No 10
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.03 E-value=1.7e-09 Score=81.40 Aligned_cols=62 Identities=37% Similarity=0.626 Sum_probs=54.6
Q ss_pred ceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEE-eC-CCCCcEEEECCCCEEE-ecCCccccc
Q psy8644 111 QYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN-EL-EPNGLFSSDLRVEWVI-NRSVDQHTN 172 (173)
Q Consensus 111 ~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~-~~-~~~~~F~Id~~tG~i~-~~~LD~E~~ 172 (173)
.|.+.|+|++++|+.|+++.|+|+|.+.++.+.|+ .+ ...++|.|++.+|.|. .+.||||..
T Consensus 1 ~~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~~ 65 (199)
T cd00031 1 SYSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREEQ 65 (199)
T ss_pred CeEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcCC
Confidence 37889999999999999999999999989999999 33 3337999999999997 778999974
No 11
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=98.35 E-value=7.3e-07 Score=57.56 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=34.3
Q ss_pred EeCCCCCCceEEEE-eC-CCCCcEEEECCCCEEE-ecCCccccc
Q psy8644 132 SDADLGVNSKLSWN-EL-EPNGLFSSDLRVEWVI-NRSVDQHTN 172 (173)
Q Consensus 132 ~D~D~g~n~~v~Y~-~~-~~~~~F~Id~~tG~i~-~~~LD~E~~ 172 (173)
+|+|.|.|+.+.|+ .+ +...+|.|++.+|.|+ .++||||+.
T Consensus 1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~ 44 (79)
T smart00112 1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQ 44 (79)
T ss_pred CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCC
Confidence 48999999999999 33 3339999999999876 779999975
No 12
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
Probab=97.94 E-value=2.1e-05 Score=51.79 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=36.9
Q ss_pred ceEEEEeCCCCCCcEEEEEEEEeCCCC----CCceEEEEeCCCCCcEEEECCCCEEE-ecCCcccc
Q psy8644 111 QYSLSIPEDVPVGTVVQVVSASDADLG----VNSKLSWNELEPNGLFSSDLRVEWVI-NRSVDQHT 171 (173)
Q Consensus 111 ~y~~~v~E~~~~g~~v~~v~A~D~D~g----~n~~v~Y~~~~~~~~F~Id~~tG~i~-~~~LD~E~ 171 (173)
+...+|+|..++|+.|+.| |.|.-.. ....+..-......+|.+++.+|.++ ...+|||+
T Consensus 2 qi~YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE~ 66 (84)
T PF08266_consen 2 QIRYSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSERIDREE 66 (84)
T ss_dssp EEEEEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS--SCCC
T ss_pred CeEEEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeecCCcceeEecCCceeEEeCCccCHHH
Confidence 3467899999999999999 4454332 12222322555689999999999997 78999996
No 13
>KOG1834|consensus
Probab=96.27 E-value=0.016 Score=51.08 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=54.5
Q ss_pred EEEEcCCCCCCCCeEE-EEE----eeEEEECCCcEEEEecCCCCCCcCccc---EEEEEEEeCCCCCCCCceeEEEEEEE
Q psy8644 25 YLHLRPKSGMYAPAFT-FSI----AKFIANPTTRLYKNVGTLKRALRTEEH---WLKVENTKHKGSNPGPLVGTCNTTII 96 (173)
Q Consensus 25 v~~~d~d~~~~n~~i~-Ysi----~~F~Id~~tG~i~~~~~~~~~LD~E~~---~l~v~a~dd~g~~p~~~~~~~~v~I~ 96 (173)
+-|+|.|-+..++.|. |.| -.|.||.. |.|+.+ .+|.|.+. .|+|.|. |+|. . +..+.+.|+|+
T Consensus 170 veAiD~DCspq~sqIC~YEI~t~d~PFaIdn~-G~irnT----ekLny~ke~~Y~ltVtAy-DCg~-k-raa~d~lV~v~ 241 (952)
T KOG1834|consen 170 VEAIDKDCSPQYSQICEYEITTPDVPFAIDND-GNIRNT----EKLNYTKEHQYKLTVTAY-DCGK-K-RAASDSLVTVH 241 (952)
T ss_pred EEeecCCCCCcccceeEEEecCCCCceEEcCC-Cccccc----cccccccceeEEEEEEEE-eccc-c-cccCcceEEEE
Confidence 4567889888888885 888 89999986 999999 99999777 9999999 8888 3 34444678887
Q ss_pred EeeC
Q psy8644 97 VEDQ 100 (173)
Q Consensus 97 V~d~ 100 (173)
|...
T Consensus 242 Vkp~ 245 (952)
T KOG1834|consen 242 VKPT 245 (952)
T ss_pred ecCc
Confidence 7654
No 14
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
Probab=95.78 E-value=0.031 Score=36.72 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=30.7
Q ss_pred eeeEEeccCCC--cEEEEcCCCCCCC---CeEEEEE------eeEEEECCCcEEEEecCCCCCCcCcc
Q psy8644 13 NHWSISKLLES--RYLHLRPKSGMYA---PAFTFSI------AKFIANPTTRLYKNVGTLKRALRTEE 69 (173)
Q Consensus 13 ~~~~i~e~~~~--~v~~~d~d~~~~n---~~i~Ysi------~~F~Id~~tG~i~~~~~~~~~LD~E~ 69 (173)
-+|+|+|.... .|.-+-.|-+... ....|+| .+|.+++.+|.|++. ..+|||.
T Consensus 3 i~YsV~EE~~~Gt~IGnia~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~----~rIDRE~ 66 (84)
T PF08266_consen 3 IRYSVPEEMPPGTVIGNIAKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVS----ERIDREE 66 (84)
T ss_dssp EEEEEESS--TT-EEEECCCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEES----S--SCCC
T ss_pred eEEEeecCCCCCCEEEEhHHhhCCCcccccccceEEeecCCcceeEecCCceeEEeC----CccCHHH
Confidence 46888875544 4444433433211 1124565 799999999999999 9999998
No 15
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=95.75 E-value=0.034 Score=37.00 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=28.8
Q ss_pred CCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEEeCCCCCcEEEECCCCEEE-ecCCcc
Q psy8644 104 NPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVEWVI-NRSVDQ 169 (173)
Q Consensus 104 ~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~~~~~~~~F~Id~~tG~i~-~~~LD~ 169 (173)
.|-|.+..|.+.|+.+...|..|++|.-.|-. .+..+.|...++ .|.|.+ .|.|+ ++++.-
T Consensus 3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~--~~~~~~~~ssDp--dF~V~~-DGsVy~~r~v~l 64 (90)
T PF08758_consen 3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCT--GRRRVIFESSDP--DFRVLE-DGSVYAKRPVQL 64 (90)
T ss_dssp --B--S-EEEE----SS-SS--EEE---B--S--S---EEEE---S--EEEEET-TTEEEEES--S-
T ss_pred cCCcccceEEEEcCchhhCCcEEEEEEeccCC--CCCceEEecCCC--CEEEcC-CCeEEEeeeEec
Confidence 47899999999999999999999999998874 455688885544 899975 78886 666543
No 16
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=93.70 E-value=1.3 Score=29.40 Aligned_cols=57 Identities=23% Similarity=0.207 Sum_probs=41.4
Q ss_pred CeEEEEE---------eeEEEECCCcEEEEecCCCCCCcCccc-EEEEEEEeCCCCCCCCceeEEEEEEEEeeCCC
Q psy8644 37 PAFTFSI---------AKFIANPTTRLYKNVGTLKRALRTEEH-WLKVENTKHKGSNPGPLVGTCNTTIIVEDQND 102 (173)
Q Consensus 37 ~~i~Ysi---------~~F~Id~~tG~i~~~~~~~~~LD~E~~-~l~v~a~dd~g~~p~~~~~~~~v~I~V~d~Nd 102 (173)
..++|++ .|...|+.++.+.=. ........ .+.|.|+|..|. +....+.|.|.+.|+
T Consensus 30 ~~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt----P~~~~~g~~~i~v~a~D~~g~-----~~~~~f~i~V~~~~~ 96 (97)
T smart00736 30 DTLTYSATLSDGSALPSWLSFDSDTGTLSGT----PTNSDVGSLSLKVTATDSSGA-----SASDTFTITVVNTND 96 (97)
T ss_pred CeEEEEEEeCCCCCCCCeEEEeCCCCEEEEE----CCCCCCcEEEEEEEEEECCCC-----EEEEEEEEEEeCCCC
Confidence 4688888 688999999887665 22222223 999999954444 567789999998886
No 17
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=92.86 E-value=1.9 Score=28.64 Aligned_cols=55 Identities=7% Similarity=-0.040 Sum_probs=32.9
Q ss_pred CcEEEEcCCCCCCCCeEEEEE--eeEEEECCCcEEEEecCCCCCCcCccc--EEEEEEEeCCCC
Q psy8644 23 SRYLHLRPKSGMYAPAFTFSI--AKFIANPTTRLYKNVGTLKRALRTEEH--WLKVENTKHKGS 82 (173)
Q Consensus 23 ~~v~~~d~d~~~~n~~i~Ysi--~~F~Id~~tG~i~~~~~~~~~LD~E~~--~l~v~a~dd~g~ 82 (173)
..+..+.-++=..+..+.|.- ..|.|.++ |.|+++ +++..... +|.|.|.|..+.
T Consensus 23 ~~lg~V~f~dC~~~~~~~~~ssDpdF~V~~D-GsVy~~----r~v~l~~~~~~F~V~a~D~~~~ 81 (90)
T PF08758_consen 23 QPLGKVNFEDCTGRRRVIFESSDPDFRVLED-GSVYAK----RPVQLSSEQRSFTVHAWDSQTQ 81 (90)
T ss_dssp --EEE---B--SS---EEEE---SEEEEETT-TEEEEE----S--S-SSS-EEEEEEEEETTTT
T ss_pred cEEEEEEeccCCCCCceEEecCCCCEEEcCC-CeEEEe----eeEecCCCceEEEEEEECCCCC
Confidence 445666533222356788888 99999997 999999 99888655 999999966665
No 18
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=76.47 E-value=54 Score=31.00 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=21.3
Q ss_pred EEEEEEEeeCCCCCCccCCCceEEEEeCCC
Q psy8644 91 CNTTIIVEDQNDNNPIFPVSQYSLSIPEDV 120 (173)
Q Consensus 91 ~~v~I~V~d~Ndn~P~f~~~~y~~~v~E~~ 120 (173)
...+|+|.| ||++|.|....-..+|.|+.
T Consensus 515 s~ATVTIlD-DD~aGIfsFe~~~~sV~Es~ 543 (928)
T TIGR00845 515 NTATVTILD-DDHAGIFTFEEDVFHVSESI 543 (928)
T ss_pred ceEEEEEec-CcccCcccccCceEEEEcCC
Confidence 456777787 88999877655567788863
No 19
>TIGR01965 VCBS_repeat VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
Probab=71.59 E-value=28 Score=23.49 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=47.9
Q ss_pred EEEEcCCCCCCCCeEEEEE-------eeEEEECCCcEEEEecC----CCCCCcCccc---EEEEEEEeCCCCCCCCceeE
Q psy8644 25 YLHLRPKSGMYAPAFTFSI-------AKFIANPTTRLYKNVGT----LKRALRTEEH---WLKVENTKHKGSNPGPLVGT 90 (173)
Q Consensus 25 v~~~d~d~~~~n~~i~Ysi-------~~F~Id~~tG~i~~~~~----~~~~LD~E~~---~l~v~a~dd~g~~p~~~~~~ 90 (173)
+...|+|.+. ...+++ +.|.|++ .|.-.-.+- ..+.|..... .|.+.+. | |. +
T Consensus 4 Lt~sD~D~gd---~~~~s~~~~~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~-D-Gt-------t 70 (99)
T TIGR01965 4 LTISDADAGQ---AHFIAQTDAAGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSA-D-GT-------S 70 (99)
T ss_pred eEEeCCCCCC---ceEEecccccCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEe-C-CC-------e
Confidence 5566777664 245555 7788888 465443311 1233443333 8999988 4 22 6
Q ss_pred EEEEEEEeeCCCCCCccCCCceEEEEeCC
Q psy8644 91 CNTTIIVEDQNDNNPIFPVSQYSLSIPED 119 (173)
Q Consensus 91 ~~v~I~V~d~Ndn~P~f~~~~y~~~v~E~ 119 (173)
..|.|+|.-.|| +|..... -...|.|+
T Consensus 71 ~~vtItI~GtND-apvi~~~-~~g~v~ED 97 (99)
T TIGR01965 71 QTVTITITGAND-AAVIGGA-DTGSVTED 97 (99)
T ss_pred EEEEEEEEccCC-CCEEecc-cceeEecC
Confidence 779999999999 5544332 23555554
No 20
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Probab=71.04 E-value=35 Score=24.40 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=35.6
Q ss_pred CcEEEEecCCCCCCcCccc------EEEEEEEeCCCCCCCCceeEEEEEEEEeeCCCCCCccCCCceEEEEeCC
Q psy8644 52 TRLYKNVGTLKRALRTEEH------WLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED 119 (173)
Q Consensus 52 tG~i~~~~~~~~~LD~E~~------~l~v~a~dd~g~~p~~~~~~~~v~I~V~d~Ndn~P~f~~~~y~~~v~E~ 119 (173)
.|..... +..+||.... .|.|.|+|..|. . +...+.|+|.| | .|...... ..+|.|+
T Consensus 65 ~GsYtft--L~~~lDH~~g~d~l~l~~~v~a~D~DGD-~----s~~~l~VtI~D--D-~P~~~~~~-~~~V~E~ 127 (137)
T TIGR03660 65 DGSYEFT--LEGPLDHAAGSDELTLNFPIIATDFDGD-T----SSITLPVTIVD--D-VPTITDVD-ALTVDED 127 (137)
T ss_pred CccEEEE--EcccccCCCCCceEEEeeeEEEEeCCCC-c----cccEEEEEEEC--C-CCeecccc-ceEEecc
Confidence 4654443 2388887442 788999976666 3 23478888877 5 46655433 3677774
No 21
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=63.06 E-value=27 Score=20.14 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=20.2
Q ss_pred eeEEEECCCcEEEEecCCCCCCcCc-cc-EEEEEEEe
Q psy8644 44 AKFIANPTTRLYKNVGTLKRALRTE-EH-WLKVENTK 78 (173)
Q Consensus 44 ~~F~Id~~tG~i~~~~~~~~~LD~E-~~-~l~v~a~d 78 (173)
....+|+.+|.|.-. -.-.-+ .. .+.|.|+|
T Consensus 14 ~gLs~d~~tG~isGt----p~~~~~~G~y~~~vtatd 46 (49)
T PF05345_consen 14 SGLSLDPSTGTISGT----PTSSVQPGTYTFTVTATD 46 (49)
T ss_pred CcEEEeCCCCEEEee----cCCCccccEEEEEEEEEc
Confidence 457889999999776 222211 12 78888873
No 22
>PF09100 Qn_am_d_aIV: Quinohemoprotein amine dehydrogenase, alpha subunit domain IV; InterPro: IPR015184 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=58.38 E-value=64 Score=22.88 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=25.7
Q ss_pred EEECCCcEEEEe---cCCCCCCcCccc-EEEEEEEe-CCCCCCCCceeEEEEEEEEeeCCCCCC
Q psy8644 47 IANPTTRLYKNV---GTLKRALRTEEH-WLKVENTK-HKGSNPGPLVGTCNTTIIVEDQNDNNP 105 (173)
Q Consensus 47 ~Id~~tG~i~~~---~~~~~~LD~E~~-~l~v~a~d-d~g~~p~~~~~~~~v~I~V~d~Ndn~P 105 (173)
+|+.+ |...-. +...+++..-.. .|.|.|+= +.|. +++.+..+.|+|.+-|+ +|
T Consensus 74 ~i~~~-G~FtP~~aGPNP~R~~~tNN~Gnl~VvAtv~d~~~---~l~~e~~liVtVqr~~~-pp 132 (133)
T PF09100_consen 74 SIDAD-GIFTPADAGPNPERKMSTNNAGNLKVVATVKDGGK---PLTGEAHLIVTVQRWNN-PP 132 (133)
T ss_dssp EE-TT-SEEEE-BSSB-TTSGGG-BS-EEEEEEEEETTTT------EEEEEEEEE---S----S
T ss_pred eeccC-ceECcCCCCCCcccccccCCcccEEEEEEEccCCc---ccceeEeEEEEeecccC-CC
Confidence 55666 776655 111122222222 88888884 4444 79999999999998886 44
No 23
>KOG3597|consensus
Probab=43.99 E-value=50 Score=28.47 Aligned_cols=56 Identities=23% Similarity=0.106 Sum_probs=41.1
Q ss_pred eEEEEEEEEeeCCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEE
Q psy8644 89 GTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145 (173)
Q Consensus 89 ~~~~v~I~V~d~Ndn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~ 145 (173)
.++...|.|..+||.+..+....+.+-+.|+...-.....+.+.|+|.++-. +.|+
T Consensus 24 ~~~~~~i~v~pvndpp~~~~~~~~~l~~~~~~~k~l~~~~l~~~d~d~~~~~-l~f~ 79 (442)
T KOG3597|consen 24 QTDVLRIHVNPVNDPPSLIFPSGSLLVILEGGQKVLDPELLTAADPDSAPLP-LEFQ 79 (442)
T ss_pred EEeeecccccccCCCcceeecccceEEeecCCceeccceEeeccCCCCCccc-eEEE
Confidence 3556788999999988888777777888888665555567888888876433 5555
No 24
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=35.88 E-value=1.2e+02 Score=19.60 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=27.2
Q ss_pred EEEEeeCCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEE
Q psy8644 94 TIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN 145 (173)
Q Consensus 94 ~I~V~d~Ndn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~ 145 (173)
+|.+.| ||.+ .+....-..++.|+. |..-..|.-..++....-.+.|.
T Consensus 2 tvtI~d-~d~~-~v~f~~~~~~v~E~~--~~~~v~V~~~~~~~~~~v~v~~~ 49 (100)
T PF03160_consen 2 TVTILD-DDDP-TVSFSSPSYTVSEGD--GTVTVTVTRSGGSLDGPVTVNYS 49 (100)
T ss_dssp EEEEE--TTSE-EEEESSSEEEEETTS--SEEEEEEEEESS-TSSEEEEEEE
T ss_pred EEEEEC-CCCC-EEEEeCCEEEEEeCC--CEEEEEEEEcccCCCcceEEEEE
Confidence 467777 6655 776666567788874 54555555554433333445665
No 25
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=32.79 E-value=86 Score=18.13 Aligned_cols=11 Identities=9% Similarity=-0.006 Sum_probs=7.3
Q ss_pred EEEECCCCEEE
Q psy8644 153 FSSDLRVEWVI 163 (173)
Q Consensus 153 F~Id~~tG~i~ 163 (173)
+.||+.||.|+
T Consensus 51 v~VDa~tG~Il 61 (64)
T PF03413_consen 51 VYVDAYTGEIL 61 (64)
T ss_dssp EEEETTT--EE
T ss_pred EEEECCCCeEE
Confidence 44899999986
No 26
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=28.97 E-value=1.4e+02 Score=18.20 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=27.7
Q ss_pred EEEECCCcEEEEecCCCCCCcCccc-EEEEEEEeCCCCCCCCceeEEEEEEEEee
Q psy8644 46 FIANPTTRLYKNVGTLKRALRTEEH-WLKVENTKHKGSNPGPLVGTCNTTIIVED 99 (173)
Q Consensus 46 F~Id~~tG~i~~~~~~~~~LD~E~~-~l~v~a~dd~g~~p~~~~~~~~v~I~V~d 99 (173)
+.+....+.|.+ ..+..+.. .....|.+..|. ..+.+.++|.|+|
T Consensus 31 ~~~~~~~~~L~I-----~~~~~~D~G~Y~C~a~N~~G~----~~s~~~~~l~v~d 76 (77)
T cd05760 31 YSVSSKERTLTL-----RSAGPDDSGLYYCCAHNAFGS----VCSSQNFTLSIID 76 (77)
T ss_pred EEEeCCCCEEEE-----eeCCcccCEEEEEEEEeCCCe----EeeCceEEEEEec
Confidence 344444455544 34445555 888888855554 3556778888887
No 27
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=28.87 E-value=1.3e+02 Score=18.76 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=16.8
Q ss_pred EEEEEEEeCCCCCCCCceeEEEEEEEE
Q psy8644 71 WLKVENTKHKGSNPGPLVGTCNTTIIV 97 (173)
Q Consensus 71 ~l~v~a~dd~g~~p~~~~~~~~v~I~V 97 (173)
.+...|+|..|+ .+.|.+.|+|
T Consensus 60 ~V~ytA~D~~GN-----~a~C~f~V~V 81 (81)
T PF02494_consen 60 TVTYTATDAAGN-----SATCSFTVTV 81 (81)
T ss_pred EEEEEEEECCCC-----EEEEEEEEEC
Confidence 899999976676 5677777764
No 28
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=24.44 E-value=45 Score=22.39 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=7.4
Q ss_pred EEEECCCCEEEecCCccc
Q psy8644 153 FSSDLRVEWVINRSVDQH 170 (173)
Q Consensus 153 F~Id~~tG~i~~~~LD~E 170 (173)
|.+|..+|.+..+-+|.+
T Consensus 59 F~vde~~~~~vVkViD~~ 76 (107)
T PF03646_consen 59 FSVDEESGRVVVKVIDKE 76 (107)
T ss_dssp EEEEEETTEEEEEEEETT
T ss_pred EEEecCCCcEEEEEEECC
Confidence 444444444443333333
No 29
>PF12461 DUF3688: Protein of unknown function (DUF3688) ; InterPro: IPR022160 This entry is represented by Spiroplasma phage 1-C74, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This domain family is found in bacteria and viruses, and is typically between 79 and 104 amino acids in length. There is a conserved YRW sequence motif. There is a single completely conserved residue Y that may be functionally important.
Probab=21.55 E-value=92 Score=20.59 Aligned_cols=23 Identities=9% Similarity=-0.083 Sum_probs=16.3
Q ss_pred eEEEE-eCC-CCCcEEEECCCCEEE
Q psy8644 141 KLSWN-ELE-PNGLFSSDLRVEWVI 163 (173)
Q Consensus 141 ~v~Y~-~~~-~~~~F~Id~~tG~i~ 163 (173)
.-.|+ .|. +.....||+.||.|+
T Consensus 61 KsvYRWdG~gEPq~P~ID~ntG~It 85 (91)
T PF12461_consen 61 KSVYRWDGVGEPQTPTIDKNTGNIT 85 (91)
T ss_pred EEEEEecCCCCccCceEcCCCCeEe
Confidence 34666 443 336777999999997
Done!