RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8644
(173 letters)
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 83.5 bits (207), Expect = 7e-20
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 45 KFIANPTTRLYKNVGTLKRAL---RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQN 101
F P T + T + EE+ + ++ K G + G L GT T+ + D N
Sbjct: 154 YFSIEPET---AIIKTALPNMDREAKEEYLVVIQ-AKDMGGHSGGLSGTTTLTVTLTDVN 209
Query: 102 DNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPN--GLFSS 155
DN P F S Y S+PEDV +GT + V A+D D+G N++ S++ ++ + LF
Sbjct: 210 DNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEI 265
Score = 79.3 bits (196), Expect = 2e-18
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 81 GSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LG 137
PL I V+D NDN P F Y ++PE +GT V V+A+DAD G
Sbjct: 80 FETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYG 139
Query: 138 VNSKLSWNELEPNGLFS 154
++KL ++ LE FS
Sbjct: 140 NSAKLVYSILEGQPYFS 156
Score = 33.4 bits (77), Expect = 0.022
Identities = 4/33 (12%), Positives = 10/33 (30%), Gaps = 3/33 (9%)
Query: 105 PIFPVSQYSLSIPEDVPVGTVVQVVSASDADLG 137
++ + E ++ +D D G
Sbjct: 2 WVWN---QMFVLEEFSGPEPILVGRLHTDLDPG 31
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 80.0 bits (198), Expect = 2e-19
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 67 TEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVV 126
+ L+ + + P+ I + D NDN PIF Y+ ++PE VGT V
Sbjct: 68 KPVYILRAQAVNR-RTGR-PVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFV 125
Query: 127 QVVSASDAD---LGVNSKLSWNELEPNGLFS 154
V+A+DAD G ++K+ ++ L+ FS
Sbjct: 126 VQVTATDADDPTYGNSAKVVYSILQGQPYFS 156
Score = 33.8 bits (78), Expect = 0.017
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 109 VSQYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
++ + E SD D G S
Sbjct: 3 MANQFFLLEEYTGSDYQYVGKLHSDQDRGDGS 34
Score = 25.3 bits (56), Expect = 9.8
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 40 TFSIAK----FIANPTTRLYKNVGTLKRAL---RTEEHWLKVENTKHKGSNPGPLVGTCN 92
+SI + F T + + T + E++ + ++ K G G L GT
Sbjct: 145 VYSILQGQPYFSVESETGI---IKTALLNMDRENREQYQVVIQ-AKDMGGQMGGLSGTTT 200
Query: 93 TTIIVED 99
I + D
Sbjct: 201 VNITLTD 207
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 79.7 bits (197), Expect = 3e-19
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 60 TLKRAL---RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSI 116
L + E+ L + + L I V D NDN PIF ++ S+
Sbjct: 56 YAFERLDREKKAEYELTAHIIDRRNNRS--LEPPSKFIIKVSDINDNAPIFVQKIFNGSV 113
Query: 117 PEDVPVGTVVQVVSASDAD---LGVNSKLSWNELEPNGLFS 154
PE +GT V V+A DAD + ++ +++ ++ N F+
Sbjct: 114 PEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEYFT 154
Score = 26.9 bits (60), Expect = 2.8
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFS 154
I+ + + D P+ V +++S + + N +F
Sbjct: 3 IWN--RMHIREEIDSPLPHHVGKLTSSVGNKNAMYIIEGE--SANTIFK 47
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 79.6 bits (197), Expect = 3e-19
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 67 TEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVV 126
++ L + PL + V+D NDN P F Y ++PE VGT V
Sbjct: 69 RAQYTLMAQAVDRDT--NRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSV 126
Query: 127 QVVSASDAD---LGVNSKLSWNELEPNGLFS 154
V+ASDAD G ++KL ++ LE FS
Sbjct: 127 IQVTASDADDPTYGNSAKLVYSILEGQPYFS 157
Score = 38.8 bits (91), Expect = 3e-04
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 17/76 (22%)
Query: 40 TFSIAK----FIANPTTRLYKNVGTLKRALR------TEEHWLKVENTKHKGSNPGPLVG 89
+SI + F T G ++ AL EE+ + ++ K G + G L G
Sbjct: 146 VYSILEGQPYFSVEAQT------GIIRTALPNMDREAKEEYHVVIQ-AKDMGGHMGGLSG 198
Query: 90 TCNTTIIVEDQNDNNP 105
T TI + D ++
Sbjct: 199 TTKVTITLTDDYKDDD 214
Score = 34.2 bits (79), Expect = 0.010
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 109 VSQYSLSIPEDVPVGTVVQVVSASDADLG 137
V I E V+ SD D G
Sbjct: 4 VWNQFFVIEEYTGPDPVLVGRLHSDIDSG 32
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 79.6 bits (197), Expect = 4e-19
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 85 GPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
V T I V D NDN P F YS+ IPE+ PVGT + +V+A+D DLG + +
Sbjct: 87 HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 146
Query: 145 NELEPNGLFSSD 156
+ P+ F+ D
Sbjct: 147 SFQPPSPFFAID 158
Score = 61.1 bits (149), Expect = 4e-12
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 100 QNDNNPIFPVSQY--SLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSD 156
Q + P F + L I ED PVG+ V + A D D + E + F+ +
Sbjct: 1 QVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLV-FGVSGEEASRFFAVE 58
Score = 37.6 bits (88), Expect = 8e-04
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 40 TFSIA----KFIANPTTRLYKNVGTLKRAL---RTEEHWLKVENTKHKGSNPGPLVGTCN 92
+S F + + T+ + L T+ + L V T PL N
Sbjct: 145 LYSFQPPSPFFAIDSARGIV----TVIQELDYEVTQAYQLTVNATD--QDKTRPLSTLAN 198
Query: 93 TTIIVEDQNDNN 104
II+ D D +
Sbjct: 199 LAIIITDMQDMD 210
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 74.7 bits (184), Expect = 3e-17
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADL--GVNSKLS 143
+ + I V D NDN P F ++ S+PE GT V V+A DAD +N L
Sbjct: 87 QVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLR 146
Score = 36.6 bits (85), Expect = 0.002
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLS------WNELEPNGLFS 154
+++PE+ G Q + +D N L + P G+F
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFI 52
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 74.3 bits (183), Expect = 4e-17
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGV---NSKL 142
+ I V DQNDN P F + S+ E GT V VSA+DAD V N+ +
Sbjct: 87 AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
Query: 143 S 143
+
Sbjct: 147 A 147
Score = 41.2 bits (97), Expect = 5e-05
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 112 YSLSIPEDVPVGTVVQVVSASDADLGVNSKLS------WNELEPNGLFSSD 156
++S PE+ G + + ++ +K+ + P G+F +
Sbjct: 5 AAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIE 54
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 74.7 bits (184), Expect = 1e-16
Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 80 KGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQ--YSLSIPEDVPVGTVVQVVSASDADLG 137
+ I+V+D ND P F + + P T V + A D D
Sbjct: 79 GHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD 138
Query: 138 VNSKLSWNELEPNGLFSSD 156
N G F D
Sbjct: 139 HNIHYFIVRDRTGGRFEVD 157
Score = 67.0 bits (164), Expect = 6e-14
Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 11/102 (10%)
Query: 60 TLKRAL---RTEEHWLKVENT-KHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLS 115
+ E+ L V+ ++ + T + + P F + Y
Sbjct: 164 RTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAE 222
Query: 116 IPEDVPVGTVVQVVSASDADLGVNSKLS---WNELEPNGLFS 154
IPE+ + + + A + ++ + + G F+
Sbjct: 223 IPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFN 261
Score = 33.9 bits (78), Expect = 0.017
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 40 TFSIAKFIANPTTRLYKNVGTLKR--ALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIV 97
TF+I PT+ + K L + + L V T+ + G + + TI V
Sbjct: 259 TFNI-----GPTSGIVKLAKELDFEDLRQPHVYSLIVTATE----DSGGFSTSVDLTIRV 309
Query: 98 EDQNDN 103
D NDN
Sbjct: 310 TDVNDN 315
Score = 28.1 bits (63), Expect = 1.4
Identities = 6/43 (13%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 126 VQVVSASDADLGVNSKL--SWNELEPNGLFSSDLRVEWVINRS 166
+ + ++AD K + F WV +
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVET 48
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 73.9 bits (182), Expect = 3e-16
Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 3/80 (3%)
Query: 77 TKHKGSNPGPLVGTCNTTIIVEDQNDNNPIF--PVSQYSLSIPEDVPVGTVVQVVSASDA 134
+ I+V+D ND P F + + P T V + A D
Sbjct: 82 NMGHNAGI-KYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDP 140
Query: 135 DLGVNSKLSWNELEPNGLFS 154
D N G F
Sbjct: 141 DTDHNIHYFIVRDRTGGRFE 160
Score = 71.6 bits (176), Expect = 2e-15
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 46 FIANPTTRLYKNVGTLKRALRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
F PT+ + K L + H + T + S G + + TI V D NDN P
Sbjct: 265 FNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS--GGFSTSVDLTIRVTDVNDNAP 322
Query: 106 IFPVSQYSL-SIPEDVPVGTVVQVVSASDADLGVNSKLS 143
F + Y ++ ED+P+GT + V A D+D G N+++
Sbjct: 323 KFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIE 361
Score = 68.5 bits (168), Expect = 3e-14
Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 5/99 (5%)
Query: 60 TLKRAL---RTEEHWLKVENT-KHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLS 115
+ E+ L V+ ++ + T + + P F + Y
Sbjct: 169 RTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAE 227
Query: 116 IPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFS 154
IPE+ + + + A + + G F+
Sbjct: 228 IPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFN 266
Score = 38.4 bits (90), Expect = 6e-04
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 113 SLSIPEDVPVGTVVQVVSASDADLGVNSKLSW--NELEPNGLFSSDLRVEWVINRS 166
S + V + ++AD K + + F WV +
Sbjct: 1 SRRVTRAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVET 53
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 74.3 bits (183), Expect = 3e-16
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 60 TLKRAL---RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSI 116
T+ L + +++ L ++ T +G+ L T I V D NDN P F + +
Sbjct: 173 TVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEV 232
Query: 117 PEDVPVGTVVQVVSASDADLGVN 139
PE+ V +V ++ +D D
Sbjct: 233 PEN-RVDVIVANLTVTDKDQPHT 254
Score = 72.0 bits (177), Expect = 2e-15
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD--LGVNSKLS 143
+ + I V D NDN P F ++ S+PE GT V V+A DAD +N L
Sbjct: 87 QVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLR 146
Score = 67.8 bits (166), Expect = 5e-14
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 37 PAFTFSIAKFIANPTTRLYKNVGTLK--RAL---RTEEHWLKVE---NTKHKGSNPGPLV 88
P F+I T N G + + + L V P
Sbjct: 268 PTGRFAI-------LTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQ 320
Query: 89 GTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLS 143
T ++ V D N+N P F + + E + GT++ ++A D D + +
Sbjct: 321 STATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIR 374
Score = 52.7 bits (127), Expect = 7e-09
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS----- 140
P+ GT I + D NDN P E ++ ++A D D+ N+
Sbjct: 425 PMSGTGTLQIYLLDINDNAPQV--LPQEAETCETPEPNSI--NITALDYDIDPNAGPFAF 480
Query: 141 KLSWNELEPNGLFS 154
L + + ++
Sbjct: 481 DLPLSPVTIKRNWT 494
Score = 36.9 bits (86), Expect = 0.002
Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 11/89 (12%)
Query: 32 SGMYAPAFTFSIAKFIANPT-----TRLYKNVGTLKRALRTEE---HWLKVENTKHKGSN 83
A F F + RL + L ++ E + + + G+
Sbjct: 471 IDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPII-ITDSGNP 529
Query: 84 PGPLVGTCNTTIIVEDQNDNNPIFPVSQY 112
P + V + N V +
Sbjct: 530 P--KSNISILRVKVCQCDSNGDCTDVHHH 556
Score = 35.0 bits (81), Expect = 0.009
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLS------WNELEPNGLFS 154
+++PE+ G Q + +D N L + P G+F
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFI 52
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 71.7 bits (176), Expect = 4e-16
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD--LGVNSKLS 143
L G +IV DQNDN PIF Y + E P GT V ++A DAD N+ L
Sbjct: 87 TLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLR 146
Score = 43.5 bits (103), Expect = 7e-06
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 108 PVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWN--ELEPNGLFSSD 156
VS + + P V V SD G +L+ + +P G F +
Sbjct: 4 VVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRIN 54
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 71.4 bits (175), Expect = 3e-15
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKL 142
P+ TI V DQNDN P F + S+ E V GT V VSA+D D +N L
Sbjct: 242 PVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVL 301
Query: 143 S 143
S
Sbjct: 302 S 302
Score = 70.7 bits (173), Expect = 5e-15
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 13/109 (11%)
Query: 40 TFSIAKFIANPTTRLYKNVGTLK--RAL---RTEEHWLKVENTKHKGSNPGPLVGTCNTT 94
F+I TT N G L + L +++ L++ + + T T
Sbjct: 423 FFNI-------TTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVT 475
Query: 95 IIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLS 143
+ VED N+ P F + + + ED+ G + + A D D KLS
Sbjct: 476 VTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLS 523
Score = 69.5 bits (170), Expect = 1e-14
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 66 RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTV 125
+ E+ L V+ T +G L I + D NDN PIF Y+ +PE+ +G
Sbjct: 338 KFPEYTLTVQATDLEG---AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFE 393
Query: 126 VQVVSASDADLGVN 139
VQ +S +D D+
Sbjct: 394 VQRLSVTDLDMPGT 407
Score = 65.7 bits (160), Expect = 3e-13
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 84 PGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPED-VPVGTVVQVVSASDADLGVNS 140
G L I D + P F ++Y S+ + G + V+ SD +
Sbjct: 14 CGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHG 71
Score = 52.2 bits (125), Expect = 1e-08
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
GT + V D NDN P+ +++ P QV++ SDAD+ N+
Sbjct: 574 VGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP-----QVLTISDADIPPNT 623
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 70.4 bits (173), Expect = 6e-15
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD---LGVNSKL 142
P+ TI V DQNDN P F + S+ E V GT V VSA+D D +N L
Sbjct: 93 PVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVL 152
Query: 143 S 143
S
Sbjct: 153 S 153
Score = 68.9 bits (169), Expect = 2e-14
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 51 TTRLYKNVGTLK--RAL---RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
TT N G L + L +++ L++ + + T T+ VED N+ P
Sbjct: 278 TTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-P 336
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLS 143
F + + + ED+ G + + A D D KLS
Sbjct: 337 FFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLS 374
Score = 67.7 bits (166), Expect = 6e-14
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 83 NPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVN 139
L I + D NDN PIF Y+ +PE+ +G VQ +S +D D+
Sbjct: 203 EGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGT 258
Score = 52.7 bits (127), Expect = 8e-09
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
GT + V D NDN P+ +++ P QV++ SDAD+ N+
Sbjct: 425 VGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP-----QVLTISDADIPPNT 474
Score = 38.4 bits (90), Expect = 5e-04
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 105 PIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLS------WNELEPNGLFS 154
+ + +S E P + + ++ +K+ + P G+F
Sbjct: 6 HDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFR 58
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 70.4 bits (173), Expect = 7e-15
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 60 TLKRAL---RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSI 116
L L + L V+ +G L T I V+D NDN P+F S Y +
Sbjct: 174 VLTSGLDRESYPTYTLVVQAADLQG---EGLSTTAKAVITVKDINDNAPVFNPSTYQGQV 230
Query: 117 PEDVPVGTVVQVVSASDADLGVN 139
PE+ V + + +D D
Sbjct: 231 PEN-EVNARIATLKVTDDDAPNT 252
Score = 70.0 bits (172), Expect = 8e-15
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGV---NSKL 142
+ I V DQNDN P F + S+ E GT V VSA+DAD V N+ +
Sbjct: 87 AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
Query: 143 S 143
+
Sbjct: 147 A 147
Score = 69.7 bits (171), Expect = 1e-14
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 51 TTRLYKNVGTLK--RAL---RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNP 105
T N G LK + L +++ L V + + T T+ V D N+ P
Sbjct: 272 VTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-P 330
Query: 106 IFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLS 143
IF ++ + +PED VG + +A + D ++ K++
Sbjct: 331 IFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKIT 368
Score = 52.7 bits (127), Expect = 8e-09
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNS 140
GT +++ D NDN PI P +++ D DL N+
Sbjct: 420 IATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQP-----HIITILDPDLPPNT 469
Score = 33.1 bits (76), Expect = 0.036
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 112 YSLSIPEDVPVGTVVQVVSASDADLGVNSKLS------WNELEPNGLFSSDLRV-EWVIN 164
+S PE+ G + + ++ +K+ + P G+F + +
Sbjct: 5 PPISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 165 RSVD 168
+ +D
Sbjct: 64 QPLD 67
Score = 32.3 bits (74), Expect = 0.063
Identities = 5/87 (5%), Positives = 18/87 (20%), Gaps = 11/87 (12%)
Query: 32 SGMYAPAFTFSIAKFIANP---TTRLYKNVGTLKRALRTEE---HWLKVENTKHKGSNPG 85
FT + + + + + E + + ++ +
Sbjct: 465 LPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADN-----Q 519
Query: 86 PLVGTCNTTIIVEDQNDNNPIFPVSQY 112
+ V D + +
Sbjct: 520 NKDQVTTLDVHVCDCEGTVNNCMKAHH 546
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 65.6 bits (161), Expect = 1e-14
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLS 143
NDN P+F Q + IPE+ PVGT V + A+DAD+G N+++
Sbjct: 4 GSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIR 50
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 65.2 bits (160), Expect = 1e-14
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 97 VEDQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLS 143
NDN+P F S Y + E+ GT + + A+D D+GVN ++
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIE 50
Score = 30.1 bits (69), Expect = 0.17
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 80 KGSNPGPLVGTCNTTIIVEDQNDNNP 105
+G P + ++D+NDN P
Sbjct: 96 RGQPP--KTDKATVVLNIKDENDNVP 119
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 67.6 bits (165), Expect = 2e-14
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 81 GSNPGPLVGTCNTTIIVEDQNDNNPI----------FPVSQYSLSIPEDVPVGTVVQVVS 130
G + N + P FP ++ S I E+ P GT Q
Sbjct: 103 SLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRL 162
Query: 131 ASDADLGVNSKLSWNELEPNGL 152
L +++ LE GL
Sbjct: 163 LPVQFLCPQISVAYRLLEGEGL 184
Score = 44.1 bits (104), Expect = 4e-06
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 9/59 (15%)
Query: 107 FPVSQYSLSIPEDVPVGTVVQVVSA--SDADLGVNSKLSWN-------ELEPNGLFSSD 156
F Y + D GT + V A + + +L + L N
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQ 61
Score = 39.1 bits (91), Expect = 2e-04
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 60 TLKRAL---RTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFP 108
+ + AL + E++ L T H G+ V + V D++D+ P F
Sbjct: 196 STRWALDREQREKYELVAVCTVHAGARE--EVVMVPFPVTVYDEDDSAPEFE 245
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 37.7 bits (88), Expect = 2e-04
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 112 YSLSIPE--DVPVGTVVQVVSASDADLGVNSKLSWNEL--EPNGLFS 154
S+SIPE +P +V V SD G KL + EP G+F
Sbjct: 5 PSISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFK 51
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 37.4 bits (87), Expect = 3e-04
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 112 YSLSIPE--DVPVGTVVQVVSASDADLGVNSKLSWNEL--EPNGLFSSD 156
+ IPE P V V S+ G +LS + +P G+F +
Sbjct: 5 TPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRIN 53
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 37.3 bits (87), Expect = 3e-04
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 109 VSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNEL--EPNGLFS 154
VS + + P V V SD G +L+ + +P G F
Sbjct: 5 VSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFR 52
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 36.9 bits (86), Expect = 5e-04
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIFP 108
+ I V D NDN P+F
Sbjct: 99 NVEKPLELRIKVLDINDNEPVFT 121
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 36.5 bits (85), Expect = 7e-04
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 86 PLVGTCNTTIIVEDQNDNNPIF 107
+ + I V D NDN P F
Sbjct: 89 QVENPIDIVINVIDMNDNRPEF 110
Score = 33.8 bits (78), Expect = 0.008
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLS------WNELEPNGLFS 154
+++PE+ G Q + + N L + P G+F
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFI 54
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 33.9 bits (78), Expect = 0.005
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 105 PIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLS------WNELEPNGLFS 154
P+ +S PE+ G + + ++ K+ + P G+F
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFI 56
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 34.2 bits (79), Expect = 0.007
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 94 TIIVEDQNDNNPIFPVSQYSLSI 116
I ++D ND+ P F + S
Sbjct: 102 EIQLQDVNDHAPEFMEDESGPSS 124
Score = 27.2 bits (61), Expect = 1.7
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 12/45 (26%)
Query: 115 SIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRV 159
S+ E+ G++V ++ DLG L L + ++
Sbjct: 16 SVLEETDRGSLVGNLA---KDLG---------LSLRELITRGAQI 48
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.080
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 15/38 (39%)
Query: 16 SISKLLESRYLHLRPKSGMYAP--AFTFSIAKFIANPT 51
++ KL ++ L+ +YA A +I T
Sbjct: 21 ALKKL-QAS---LK----LYADDSAPALAI-----KAT 45
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 28.6 bits (65), Expect = 1.1
Identities = 4/12 (33%), Positives = 4/12 (33%)
Query: 45 KFIANPTTRLYK 56
F R YK
Sbjct: 369 AFTMIDGERAYK 380
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 28.6 bits (65), Expect = 1.2
Identities = 2/12 (16%), Positives = 5/12 (41%)
Query: 45 KFIANPTTRLYK 56
F ++ Y+
Sbjct: 368 AFFSHEGQWAYR 379
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 27.2 bits (61), Expect = 1.5
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 12/45 (26%)
Query: 115 SIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRV 159
SIPE+ GT V ++ DLG LE L RV
Sbjct: 8 SIPEEAKHGTFVGRIA---QDLG---------LELTELVPRLFRV 40
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 27.7 bits (62), Expect = 1.9
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 82 SNPGPLVGTCNTTIIVEDQNDNNPIFPVSQY 112
+ L+GT +++ D N +P S++
Sbjct: 368 TGSDSLIGTALSSMGSHDSTQNCLSYPNSKF 398
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 27.9 bits (63), Expect = 2.0
Identities = 2/12 (16%), Positives = 2/12 (16%)
Query: 45 KFIANPTTRLYK 56
F Y
Sbjct: 372 AFFTFKGQPAYH 383
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell
adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Length = 159
Score = 26.3 bits (57), Expect = 4.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 105 PIFPVSQYSLSIPEDVPVGTVVQVVSASD 133
FP YS +P+DV G + V S+
Sbjct: 34 TGFPEDVYSAVLPKDVHEGQPLLNVKFSN 62
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta
barrel, bacterial microcompartmen propanediol,
signaling protein; 1.80A {Salmonella typhimurium}
Length = 124
Score = 26.1 bits (57), Expect = 4.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 35 YAPAFTFSIAKFIANPTTRLYKNVG 59
Y P ++A IANP L+K +G
Sbjct: 14 YVPGKQVTLAHLIANPGKDLFKKLG 38
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin,
transglutaminase fold, DNA-damage recognition, DNA
repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB:
2qsg_A* 2qsh_A*
Length = 533
Score = 26.8 bits (58), Expect = 5.1
Identities = 8/62 (12%), Positives = 18/62 (29%)
Query: 65 LRTEEHWLKVENTKHKGSNPGPLVGTCNTTIIVEDQNDNNPIFPVSQYSLSIPEDVPVGT 124
L++ W GS ++ E + ++ ++ L IP
Sbjct: 391 LKSARQWYMNGRILKTGSRCKKVIKRTVGRPKGEAEEEDERLYSFEDTELYIPPLASASG 450
Query: 125 VV 126
+
Sbjct: 451 EI 452
>4axi_A EUTS, ethanolamine carboxysome structural protein; bacterial
microcompartment; HET: GOL; 1.51A {Clostridium
difficile}
Length = 125
Score = 25.6 bits (56), Expect = 5.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 35 YAPAFTFSIAKFIANPTTRLYKNVG 59
Y P ++A IANP +YK +G
Sbjct: 14 YVPGKQVTLAHIIANPNEDIYKKLG 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.398
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,573,983
Number of extensions: 137951
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 84
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.8 bits)