RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8644
         (173 letters)



>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 107

 Score = 46.5 bits (109), Expect = 6e-08
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 102 DNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNEL-EPNGLFS 154
           +  P F  +   + + ED+  G  +  + A D D     KLS+    +P    +
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLT 54


>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 114

 Score = 44.7 bits (104), Expect = 3e-07
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 101 NDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASD 133
           NDN P F    ++ S+PE    GT V  V+A D
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAID 33


>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 113

 Score = 43.9 bits (102), Expect = 6e-07
 Identities = 16/35 (45%), Positives = 19/35 (54%)

Query: 100 QNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDA 134
           QNDN P F    +  S+ E V  GT V  VSA+D 
Sbjct: 1   QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDE 35


>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 113

 Score = 43.5 bits (101), Expect = 1e-06
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 101 NDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW 144
           NDN PIF    Y+  +PE+  +G  VQ +S +D D+        
Sbjct: 2   NDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQA 44


>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 112

 Score = 43.2 bits (100), Expect = 1e-06
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 101 NDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSWNELEPNGLFSSDLRVE 160
           NDN P F    +  S+ E    GT V  VSA+DAD  VN   ++N      + S D  + 
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN---TYNAAIAYTIVSQDPELP 57

Query: 161 WVINRSVDQHTN 172
                +V++ T 
Sbjct: 58  HKNMFTVNRDTG 69


>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 136

 Score = 42.7 bits (99), Expect = 2e-06
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 99  DQNDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
           +       FP   YS  +P+DV  G  +  V  S+ +
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN 41



 Score = 28.8 bits (63), Expect = 0.19
 Identities = 3/35 (8%), Positives = 9/35 (25%), Gaps = 1/35 (2%)

Query: 91  CNTTIIVEDQNDNNPIFPVSQYS-LSIPEDVPVGT 124
               +  E      P+    +   +  P  +   +
Sbjct: 94  VAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHS 128


>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 104

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 105 PIFPVSQYSLSIPEDVPVGTVVQVVSASDADLGVNSKLSW------NELEPNGLFSSD 156
           P+       +S PE+   G   + +    ++     K+ +       +  P G+F  +
Sbjct: 1   PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIE 57


>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 102

 Score = 33.3 bits (75), Expect = 0.003
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 114 LSIPEDVPVGTVVQVVSASDADLGVNSKLSWNEL------EPNGLFSSD 156
           +++PE+   G   Q +    +    N  L ++         P G+F  +
Sbjct: 9   INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIIN 56


>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 107

 Score = 32.4 bits (72), Expect = 0.008
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 5/35 (14%)

Query: 101 NDNNPIFPVSQYSLSIPEDVPVGTVVQVVSASDAD 135
           NDN P+   S    ++ +  P      V++ SDAD
Sbjct: 1   NDNGPVP--SPRVFTMCDQNPEPQ---VLTISDAD 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 636,588
Number of extensions: 26552
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 11
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.5 bits)