Query psy8646
Match_columns 191
No_of_seqs 132 out of 155
Neff 4.5
Searched_HMMs 46136
Date Sat Aug 17 00:08:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4471|consensus 100.0 1.8E-30 3.8E-35 246.2 10.0 126 56-190 30-179 (717)
2 KOG1089|consensus 98.9 6.2E-09 1.3E-13 99.9 8.0 115 72-190 12-149 (573)
3 smart00568 GRAM domain in gluc 98.4 5.6E-07 1.2E-11 61.4 5.5 52 62-118 2-56 (61)
4 PF02893 GRAM: GRAM domain; I 98.0 1.8E-05 3.8E-10 55.1 6.3 55 59-118 6-64 (69)
5 PF11605 Vps36_ESCRT-II: Vacuo 97.4 0.00025 5.4E-09 53.4 4.9 62 57-118 5-69 (89)
6 KOG3294|consensus 97.1 0.0017 3.6E-08 57.5 6.7 62 60-121 14-85 (261)
7 PF07289 DUF1448: Protein of u 97.0 0.0018 3.8E-08 59.5 6.9 92 55-150 144-250 (339)
8 smart00683 DM16 Repeats in sea 96.5 0.02 4.3E-07 40.1 7.4 51 66-118 1-51 (55)
9 KOG1090|consensus 96.0 0.007 1.5E-07 62.7 4.3 99 57-156 783-919 (1732)
10 PF08000 bPH_1: Bacterial PH d 96.0 0.032 6.9E-07 44.5 7.0 79 60-150 25-122 (124)
11 PF14470 bPH_3: Bacterial PH d 95.0 0.26 5.6E-06 35.3 8.3 83 62-148 1-95 (96)
12 PF07289 DUF1448: Protein of u 92.9 0.76 1.7E-05 42.5 9.1 59 58-118 15-73 (339)
13 PF04842 DUF639: Plant protein 90.9 0.77 1.7E-05 45.9 7.2 86 59-145 200-312 (683)
14 cd01201 Neurobeachin Neurobeac 83.1 1.8 3.9E-05 34.1 3.8 26 77-103 11-36 (108)
15 PF14844 PH_BEACH: PH domain a 66.9 8.8 0.00019 28.4 3.7 25 76-101 9-33 (106)
16 PF02174 IRS: PTB domain (IRS- 59.5 63 0.0014 24.2 7.2 60 86-151 23-95 (100)
17 KOG2760|consensus 58.3 10 0.00022 36.2 3.2 56 62-117 39-99 (432)
18 PF08567 TFIIH_BTF_p62_N: TFII 57.3 57 0.0012 23.8 6.4 54 83-136 10-68 (79)
19 PF10915 DUF2709: Protein of u 55.7 5.5 0.00012 34.9 0.9 31 58-88 69-99 (238)
20 PF03517 Voldacs: Regulator of 55.1 14 0.00029 29.3 3.0 29 87-117 1-30 (135)
21 KOG3238|consensus 49.6 22 0.00049 31.1 3.7 33 86-118 35-70 (216)
22 PF05015 Plasmid_killer: Plasm 39.9 47 0.001 24.6 3.7 31 79-110 55-88 (93)
23 cd01202 FRS2 Fibroblast growth 32.8 1.4E+02 0.003 23.4 5.4 61 85-151 21-92 (102)
24 KOG4347|consensus 30.0 85 0.0018 31.8 4.7 42 79-121 32-76 (671)
25 TIGR02116 toxin_Txe_YoeB toxin 29.3 60 0.0013 23.0 2.7 21 82-102 45-68 (80)
26 PF02829 3H: 3H domain; Inter 26.7 62 0.0013 24.8 2.5 23 72-94 24-46 (98)
27 TIGR02385 RelE_StbE addiction 24.2 82 0.0018 21.5 2.6 24 79-102 46-72 (88)
28 cd00927 Cyt_c_Oxidase_VIc Cyto 23.3 38 0.00082 24.8 0.7 13 178-190 49-61 (70)
29 PF10341 TPP1: Shelterin compl 21.2 1.7E+02 0.0037 21.7 4.0 29 83-111 77-106 (106)
No 1
>KOG4471|consensus
Probab=99.96 E-value=1.8e-30 Score=246.20 Aligned_cols=126 Identities=31% Similarity=0.627 Sum_probs=118.9
Q ss_pred CCCCCCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee--ccCC-----------
Q psy8646 56 RPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI--KLNT----------- 122 (191)
Q Consensus 56 ~~~~~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr--Kigg----------- 122 (191)
.++.+++||||.|++.+ |+|||.|++.|+|.||||||||++.+.+++++++||||+|.+ |+||
T Consensus 30 ~~~~~~~L~GE~i~~~~----y~c~f~G~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~ 105 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEK----YICPFLGAVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLE 105 (717)
T ss_pred ccCcccccCCcccccce----ecccccccccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEE
Confidence 57899999999998776 999999999999999999999999999889999999999999 8885
Q ss_pred -CCCce--EEEecccCCchhhHHHHHHHhhccccCCCccccccccceeeccCccCCCC------cEeech--HHHHHhc
Q psy8646 123 -RSNDI--WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMG------WNIMNQ--YAELREN 190 (191)
Q Consensus 123 -rg~D~--lrFa~k~~~~~~~~~vfe~L~~~afPls~~~~LF~~~AF~Y~~n~~~~nG------W~IYdp--~~Ey~Rq 190 (191)
.|+|| +||+|+++++. |+++||.|.+++||+.+...|| ||.|.. .++.|| |.+|+| +.||+||
T Consensus 106 i~CKDmr~lR~~fk~~~q~-r~~~~e~L~~~~~p~~~~~~LF---aF~~~~-~~~~ng~e~~~~~~l~~P~~~~E~~r~ 179 (717)
T KOG4471|consen 106 ITCKDMRNLRCAFKQEEQC-RRDWFERLNRAAFPPAKSEDLF---AFAYHA-WFPVNGSENGQHWKLYDPMFKNEYRRQ 179 (717)
T ss_pred EEeccccceeeecCccccc-HHHHHHHHHHhcCCcccchhhh---hcccHh-hcCCCCccccccccccChhhHhHHHhc
Confidence 36799 99999999988 8899999999999999999999 999998 888888 999999 9999997
No 2
>KOG1089|consensus
Probab=98.86 E-value=6.2e-09 Score=99.89 Aligned_cols=115 Identities=14% Similarity=0.171 Sum_probs=84.6
Q ss_pred ecceEEecCCCC---ceeEEEEEEeeEEEEeecC--CCCceEEeecceeeee--cc---------CC----CCCceEEEe
Q psy8646 72 AREVTYLCPYSG---PARGILSVTNYKLYFRSID--RETPYVVEVPLGVVSI--KL---------NT----RSNDIWFWL 131 (191)
Q Consensus 72 a~~V~ylcp~~G---~v~G~L~iTNYrL~F~s~d--~~~~~~l~vPLg~Isr--Ki---------gg----rg~D~lrFa 131 (191)
..+|...-+... ++.|+|++|.+|++|.... .+..+.+..+...|+. |. |+ +|+|+..|+
T Consensus 12 v~~v~l~~~~~~~~~~~~Gtl~lt~~hli~~~~~~~~~~~~e~w~l~~~i~~v~k~~~~~~~~~~g~~i~l~CK~~~~~~ 91 (573)
T KOG1089|consen 12 VHNVELHDRENPVTLALVGTLLLTTHHLIFKILQCRQANSKELWLLHDNIDSVEKDPSTFKNSTSGGPITLKCKDFRVIS 91 (573)
T ss_pred ecceeEecCCCCccccccceEEEeeceeeeeecccccccchhhccccchHhhhccCcceeeccccCCchhhhhhcceEEE
Confidence 355555555433 6899999999999998665 1234456666666665 43 22 788996666
Q ss_pred cccCCchhhHHHHHHHhhccccCCCccccccccceeeccCcc-CCC--CcEeechHHHHHhc
Q psy8646 132 HKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYF-RKM--GWNIMNQYAELREN 190 (191)
Q Consensus 132 ~k~~~~~~~~~vfe~L~~~afPls~~~~LF~~~AF~Y~~n~~-~~n--GW~IYdp~~Ey~Rq 190 (191)
+......++++|+++|.+++-+ .+..++| ||.|.++.- .++ ||..+||++||+||
T Consensus 92 ~~i~~~~e~~~v~~s~~~ls~~-~~~~~ly---~f~y~~~~~~~~~~~gw~~fd~~~ef~r~ 149 (573)
T KOG1089|consen 92 FLIPDDLECRDVYSSIENLSNI-DSILQLY---AFFYAPNFQNLEDPSGWKMFDPESEFDRM 149 (573)
T ss_pred EeccchHHHHHHHHHHHHhccc-Ccccccc---ccccCCcccccccccCceecchHhHHHHH
Confidence 6655555799999999999985 4556799 999998543 235 99999999999997
No 3
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=98.42 E-value=5.6e-07 Score=61.36 Aligned_cols=52 Identities=35% Similarity=0.476 Sum_probs=42.9
Q ss_pred CCCCceeEEeecceEEecCCC--CceeEEEEEEeeEEEEeecCCCCce-EEeecceeeee
Q psy8646 62 LLPGEIIQGFAREVTYLCPYS--GPARGILSVTNYKLYFRSIDRETPY-VVEVPLGVVSI 118 (191)
Q Consensus 62 LLPGE~i~~~a~~V~ylcp~~--G~v~G~L~iTNYrL~F~s~d~~~~~-~l~vPLg~Isr 118 (191)
|.++|.++.. |-|.+. +++.|+|+|||++|+|.+....... .+.+||..|.+
T Consensus 2 l~~~E~l~~~-----~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~ 56 (61)
T smart00568 2 LPEEEKLIAD-----YSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITR 56 (61)
T ss_pred cCCCcEEEEE-----EEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeE
Confidence 5678888664 888886 6899999999999999996554444 89999998887
No 4
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=98.03 E-value=1.8e-05 Score=55.15 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=36.2
Q ss_pred CCCCCCCceeEEeecceEEecCCCC---ceeEEEEEEeeEEEEeecCCCCce-EEeecceeeee
Q psy8646 59 DLPLLPGEIIQGFAREVTYLCPYSG---PARGILSVTNYKLYFRSIDRETPY-VVEVPLGVVSI 118 (191)
Q Consensus 59 ~~~LLPGE~i~~~a~~V~ylcp~~G---~v~G~L~iTNYrL~F~s~d~~~~~-~l~vPLg~Isr 118 (191)
.+.|.++|.++.. |-|.+.. ++.|+|+|||++|.|.+....... .+.+||.-|..
T Consensus 6 ~F~lp~~E~li~~-----~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~ 64 (69)
T PF02893_consen 6 LFKLPEEERLIEE-----YSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKS 64 (69)
T ss_dssp -----TT--EEEE-----EEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEE
T ss_pred cccCCCCCeEEEE-----EEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeE
Confidence 3556667777554 6676654 799999999999999996544444 89999988876
No 5
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=97.43 E-value=0.00025 Score=53.39 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=40.2
Q ss_pred CCCCCCCCCceeEEeecceEE-ecCCC--CceeEEEEEEeeEEEEeecCCCCceEEeecceeeee
Q psy8646 57 PDDLPLLPGEIIQGFAREVTY-LCPYS--GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI 118 (191)
Q Consensus 57 ~~~~~LLPGE~i~~~a~~V~y-lcp~~--G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr 118 (191)
..++.|.|||++.....+|-. =...- ....|+|+||+|||+|..........+.+||..|..
T Consensus 5 s~~p~L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~ 69 (89)
T PF11605_consen 5 SGRPVLEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISH 69 (89)
T ss_dssp CS-C---TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEE
T ss_pred ccCcccCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEE
Confidence 466789999999998888853 22211 234899999999999975544344589999999888
No 6
>KOG3294|consensus
Probab=97.06 E-value=0.0017 Score=57.47 Aligned_cols=62 Identities=24% Similarity=0.312 Sum_probs=46.7
Q ss_pred CCCCCCceeEEeecceEE--ec------CCCCceeEEEEEEeeEEEEeecC-CCCceEEeecceeeee-ccC
Q psy8646 60 LPLLPGEIIQGFAREVTY--LC------PYSGPARGILSVTNYKLYFRSID-RETPYVVEVPLGVVSI-KLN 121 (191)
Q Consensus 60 ~~LLPGE~i~~~a~~V~y--lc------p~~G~v~G~L~iTNYrL~F~s~d-~~~~~~l~vPLg~Isr-Kig 121 (191)
+-++-||.|......|-. .| -+.|..+|+|+|||||++|.+.. +|.-..|++|+-.|-. |+.
T Consensus 14 vl~~n~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~kln 85 (261)
T KOG3294|consen 14 VLLYNGESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVKLN 85 (261)
T ss_pred eEecCCcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEEEecCCCCcchhhhcchhhhhhhceec
Confidence 568889999988888843 23 24478999999999999998877 4444478888866666 544
No 7
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=97.03 E-value=0.0018 Score=59.49 Aligned_cols=92 Identities=23% Similarity=0.260 Sum_probs=68.3
Q ss_pred CCCCCCCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee------ccCC------
Q psy8646 55 SRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI------KLNT------ 122 (191)
Q Consensus 55 ~~~~~~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr------Kigg------ 122 (191)
.+-..+.|||+|.|....+.|-.++.-.|.+ |+++|||-|+..-+.-+ ..|-++||+-.|.. |-|-
T Consensus 144 i~~~~L~lLp~E~v~~~~~gVwnls~dqGnL-GtfivTNvRiVW~A~~n-e~fNVSiPylqi~~i~ir~SKfG~aLVieT 221 (339)
T PF07289_consen 144 IRDGQLKLLPQEQVYSRVNGVWNLSSDQGNL-GTFIVTNVRIVWFADMN-ESFNVSIPYLQIKSIRIRDSKFGPALVIET 221 (339)
T ss_pred eeCCeEeeCCccEEeeccCCEEEcccCCCce-eEEEEeeeEEEEEccCC-ccccccchHhhheeeeeeccccceEEEEEE
Confidence 3457799999999999999999999998999 99999999998855544 46899999965555 3331
Q ss_pred --CCCce-EEEecccCCchhhHHHHHHHhhc
Q psy8646 123 --RSNDI-WFWLHKLKKSLEDEMLFDEVQQY 150 (191)
Q Consensus 123 --rg~D~-lrFa~k~~~~~~~~~vfe~L~~~ 150 (191)
.+--+ |=|=-+++.. -.++|..++++
T Consensus 222 ~~~sGgYVLGFRvDP~Er--L~~l~KEi~sL 250 (339)
T PF07289_consen 222 SESSGGYVLGFRVDPEER--LQELFKEIQSL 250 (339)
T ss_pred eccCCcEEEEEEcCHHHH--HHHHHHHHHHH
Confidence 11134 5555566532 57777777663
No 8
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=96.51 E-value=0.02 Score=40.05 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=40.8
Q ss_pred ceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee
Q psy8646 66 EIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI 118 (191)
Q Consensus 66 E~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr 118 (191)
|.+..+-..|--+.-..|-. |+|+|||-|++.-+... +.|-++||+..|..
T Consensus 1 E~v~~~~~~Ved~kgn~G~~-G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~ 51 (55)
T smart00683 1 ERVLTRINGVEDTKGNNGDL-GVFFVTNLRLVWHSDTN-PRFNISVGYLQITN 51 (55)
T ss_pred CEEEeeecCeEecCCCCCCe-eEEEEEeeEEEEEeCCC-CceEEEEcceeEEE
Confidence 56667777777777777865 99999999999977765 46899999987764
No 9
>KOG1090|consensus
Probab=96.02 E-value=0.007 Score=62.66 Aligned_cols=99 Identities=23% Similarity=0.395 Sum_probs=62.1
Q ss_pred CCCCCCCCCceeEEeecceEEecCCC-------------CceeEEEEEEeeEEEEeecCCC-----CceEEeecceeeee
Q psy8646 57 PDDLPLLPGEIIQGFAREVTYLCPYS-------------GPARGILSVTNYKLYFRSIDRE-----TPYVVEVPLGVVSI 118 (191)
Q Consensus 57 ~~~~~LLPGE~i~~~a~~V~ylcp~~-------------G~v~G~L~iTNYrL~F~s~d~~-----~~~~l~vPLg~Isr 118 (191)
.-++-|||||.++..-=++ ||-|.- =|..|.|++||||++|+...-+ ...+=.+|++..-+
T Consensus 783 ~~~P~LlpGE~lv~D~lrc-yLlpdgrE~e~~~~~~~~LlPAeGalFLTnYRVIFkG~p~Dpl~~eqviVrtfPlasl~k 861 (1732)
T KOG1090|consen 783 NFDPVLLPGEFLVSDPLRC-YLLPDGRESEMSLNRLENLLPAEGALFLTNYRVIFKGKPVDPLATEQVIVRTFPLASLEK 861 (1732)
T ss_pred CCCccccCchhhccCCceE-EEecCcccccccccccccccccCcceEEeeeEEEecCCCCCcccccceEEEEeehhhhhh
Confidence 3678999999987543334 554431 1688999999999999865433 23466889987777
Q ss_pred --ccCC----------CCC-----ce--EEEecccCCchhhHHHHH-HHhhccccCCC
Q psy8646 119 --KLNT----------RSN-----DI--WFWLHKLKKSLEDEMLFD-EVQQYAFPVSH 156 (191)
Q Consensus 119 --Kigg----------rg~-----D~--lrFa~k~~~~~~~~~vfe-~L~~~afPls~ 156 (191)
||.. .|= -| ++.||+.+-..+..++|. .|.++-.|...
T Consensus 862 eKkisv~~~~~dQll~~Glqlrs~~fql~k~Afd~ev~~d~~E~frk~l~K~r~p~d~ 919 (1732)
T KOG1090|consen 862 EKKISVKKLIPDQLLEKGLQLRSIIFQLSKCAFDIEVAFDEDEIFRKALEKFREPIDT 919 (1732)
T ss_pred hhhhhhhccChHHHHHhcchhhhHHHHHHHhhcCccccccHHHHHHHHHHHhcCCccc
Confidence 6642 111 12 555776544433455665 45556666543
No 10
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=95.97 E-value=0.032 Score=44.47 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=51.4
Q ss_pred CCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecC---CCCceEEeecceeeee-cc--CCCCC--------
Q psy8646 60 LPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSID---RETPYVVEVPLGVVSI-KL--NTRSN-------- 125 (191)
Q Consensus 60 ~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d---~~~~~~l~vPLg~Isr-Ki--ggrg~-------- 125 (191)
.-|+|||+|+.. | ..++..+.+||+||++.-.. ..+.....+|+.-|.. .+ .|..+
T Consensus 25 ~~L~~gE~I~~a-----y-----k~iRD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki~ 94 (124)
T PF08000_consen 25 PLLLDGEEIEAA-----Y-----KLIRDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKIW 94 (124)
T ss_dssp GGSSTT--EEEE-----E-----EESSEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEEE
T ss_pred HhcCCCCeeeee-----e-----hhhceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEEE
Confidence 458999999664 4 34589999999999997643 3445678999988888 44 23222
Q ss_pred ----ce-EEEecccCCchhhHHHHHHHhhc
Q psy8646 126 ----DI-WFWLHKLKKSLEDEMLFDEVQQY 150 (191)
Q Consensus 126 ----D~-lrFa~k~~~~~~~~~vfe~L~~~ 150 (191)
.+ +.+.|+... .-.+++..|.++
T Consensus 95 i~~~~~~i~~~f~k~~--di~~i~k~L~~~ 122 (124)
T PF08000_consen 95 ISGQGFPIEFEFKKKT--DIYEIYKALAEY 122 (124)
T ss_dssp ETTESSEEEEEEGTTS--HHHHHHHHHHHH
T ss_pred ECCCcEEEEEecCCCC--CHHHHHHHHHHH
Confidence 33 455555532 257777777664
No 11
>PF14470 bPH_3: Bacterial PH domain
Probab=94.96 E-value=0.26 Score=35.28 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=51.2
Q ss_pred CCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCC-CCceEEeecceeeee---ccC---C-----CCCceEE
Q psy8646 62 LLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDR-ETPYVVEVPLGVVSI---KLN---T-----RSNDIWF 129 (191)
Q Consensus 62 LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~-~~~~~l~vPLg~Isr---Kig---g-----rg~D~lr 129 (191)
|.+||+|...+.-..- ...+...|.|.+||=||+|..... ......++|+.-|.. +-| + -+++.++
T Consensus 1 L~~~E~I~~~~~~~~~--~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~~~~~~~ 78 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYN--YFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIETNGEKIK 78 (96)
T ss_pred CcCCCEEEEEEEEEEe--ecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEECCEEEE
Confidence 6789999776432211 113566799999999999987752 234579999988777 222 1 1223355
Q ss_pred EecccCCchhhHHHHHHHh
Q psy8646 130 WLHKLKKSLEDEMLFDEVQ 148 (191)
Q Consensus 130 Fa~k~~~~~~~~~vfe~L~ 148 (191)
|..-+.+ ..+.+++.++
T Consensus 79 i~~i~k~--~~~~~~~~i~ 95 (96)
T PF14470_consen 79 IDNIQKG--DVKEFYEYIK 95 (96)
T ss_pred EEEcCHH--HHHHHHHHHh
Confidence 5433332 2577777665
No 12
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=92.86 E-value=0.76 Score=42.51 Aligned_cols=59 Identities=29% Similarity=0.376 Sum_probs=44.1
Q ss_pred CCCCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee
Q psy8646 58 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI 118 (191)
Q Consensus 58 ~~~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr 118 (191)
....|.|||.+++.-..|-=.=.+.| -+|+|+|||-||+.-+.... ..-++|=+.+|..
T Consensus 15 ~~l~lr~GE~~i~~~~~VEDtKGN~G-~~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~ 73 (339)
T PF07289_consen 15 SQLKLRPGEFIIDRLDPVEDTKGNNG-DRGRLVVTNLRLIWHSLKRP-RINLSIGYNCITN 73 (339)
T ss_pred hhcccccceEEEEeeeceeeccCCCC-CeeEEEEEeeeeEEeccCCC-ceeEEeeceeEEE
Confidence 45778899999887666643334444 56999999999999887654 4778888877766
No 13
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=90.86 E-value=0.77 Score=45.92 Aligned_cols=86 Identities=21% Similarity=0.152 Sum_probs=51.3
Q ss_pred CCCCCCCceeEEeecceEE----ecCCCCceeEEEEEEeeEEEEeecC---CCCceEEee--cceeeee--ccCC-----
Q psy8646 59 DLPLLPGEIIQGFAREVTY----LCPYSGPARGILSVTNYKLYFRSID---RETPYVVEV--PLGVVSI--KLNT----- 122 (191)
Q Consensus 59 ~~~LLPGE~i~~~a~~V~y----lcp~~G~v~G~L~iTNYrL~F~s~d---~~~~~~l~v--PLg~Isr--Kigg----- 122 (191)
+.+|..||.|++....++- =+-..-+=.|.|++|||-|||.+.. -+++..+|+ .|..+-+ +.|-
T Consensus 200 ~~~l~~~E~IL~idgt~~tqPVl~hig~saWPGRLTLTn~ALYFEa~gv~sy~~a~r~DLs~d~~q~Vkp~~tGP~Ga~L 279 (683)
T PF04842_consen 200 SLELAEDEKILDIDGTATTQPVLQHIGISAWPGRLTLTNHALYFEAIGVVSYDKAVRYDLSKDLKQVVKPELTGPWGARL 279 (683)
T ss_pred ccccCCCcEEEEecCCCCCCchhhccccccCCceeEeecceeeeeecccccCCCceEEECCCCccceecccccCCCcccc
Confidence 4689999999987655321 0111124579999999999998874 234444444 3344444 4441
Q ss_pred -------CCCce---EEEecc-cCCchhhHHHHH
Q psy8646 123 -------RSNDI---WFWLHK-LKKSLEDEMLFD 145 (191)
Q Consensus 123 -------rg~D~---lrFa~k-~~~~~~~~~vfe 145 (191)
++-+. +.|=|. ..++. |||..=
T Consensus 280 FDkAV~ykS~s~sEpvvlEFpel~g~~-RRD~Wl 312 (683)
T PF04842_consen 280 FDKAVMYKSSSLSEPVVLEFPELKGHT-RRDYWL 312 (683)
T ss_pred cceeeEEecCCCCCceEEEccccCCCc-hHHHHH
Confidence 12233 666666 35666 888753
No 14
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=83.09 E-value=1.8 Score=34.06 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=20.5
Q ss_pred EecCCCCceeEEEEEEeeEEEEeecCC
Q psy8646 77 YLCPYSGPARGILSVTNYKLYFRSIDR 103 (191)
Q Consensus 77 ylcp~~G~v~G~L~iTNYrL~F~s~d~ 103 (191)
.+.|. ..+.|+|.||+.+|||...++
T Consensus 11 mVtPl-~vvpG~l~ITt~~lyF~~d~~ 36 (108)
T cd01201 11 LIAPG-VVVKGTLSITTTEIFFEVDER 36 (108)
T ss_pred EEEEE-EEeccEEEEecCEEEEEECCc
Confidence 44554 567999999999999987654
No 15
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=66.90 E-value=8.8 Score=28.44 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEecCCCCceeEEEEEEeeEEEEeec
Q psy8646 76 TYLCPYSGPARGILSVTNYKLYFRSI 101 (191)
Q Consensus 76 ~ylcp~~G~v~G~L~iTNYrL~F~s~ 101 (191)
..+.|. +.+.|+|.||+-+|||.+.
T Consensus 9 ~~I~~~-~~~~G~l~i~~~~i~F~~~ 33 (106)
T PF14844_consen 9 ELITPL-DSIPGTLIITKSSIYFIPN 33 (106)
T ss_dssp EEEETT-EEEEEEEEE-SSEEEEEE-
T ss_pred EEEEee-eeEEEEEEEeCCEEEEEEC
Confidence 455565 7789999999999999876
No 16
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=59.52 E-value=63 Score=24.18 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=41.1
Q ss_pred eEEEEEEeeEEEEeecCCCCceEEeecceeeee--ccC-------C-C---CCceEEEecccCCchhhHHHHHHHhhcc
Q psy8646 86 RGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI--KLN-------T-R---SNDIWFWLHKLKKSLEDEMLFDEVQQYA 151 (191)
Q Consensus 86 ~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr--Kig-------g-r---g~D~lrFa~k~~~~~~~~~vfe~L~~~a 151 (191)
.+.|.||...|.|.... .....+..||..|-| ... | + |+-++.|...+ ..+||+.|..++
T Consensus 23 ~~~L~l~~~~l~L~~~~-~~~~~~~Wpl~~lRryG~~~~~F~fEaGRrc~tG~G~f~f~t~~-----a~~I~~~v~~~i 95 (100)
T PF02174_consen 23 PYLLCLTPDELILIDPQ-SGEPILEWPLRYLRRYGRDDGIFSFEAGRRCPTGEGLFWFQTPD-----AEEIFETVERAI 95 (100)
T ss_dssp EEEEEEESSEEEEEETT-TTEEEEEEEGGGEEEEEEETTEEEEEESTTSTTCSEEEEEEEST-----HHHHHHHHHHHH
T ss_pred EEEEEECCCEEEEecCC-CCceEEEEEhHHhhhhccCCCEEEEEECCcCCCCCcEEEEEeCC-----HHHHHHHHHHHH
Confidence 57999999999995444 346789999999988 322 2 2 33334444333 588999888754
No 17
>KOG2760|consensus
Probab=58.30 E-value=10 Score=36.24 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=40.3
Q ss_pred CCCCceeEEeecceEEec---CCCCceeEEEEEEeeEEEEeec--CCCCceEEeecceeee
Q psy8646 62 LLPGEIIQGFAREVTYLC---PYSGPARGILSVTNYKLYFRSI--DRETPYVVEVPLGVVS 117 (191)
Q Consensus 62 LLPGE~i~~~a~~V~ylc---p~~G~v~G~L~iTNYrL~F~s~--d~~~~~~l~vPLg~Is 117 (191)
+-+.|++..++++|.|+- |+..--.|++.+|++||+.++. ..+......+||.+|-
T Consensus 39 ~~~ne~l~lt~~~I~~~D~~~k~~~~~dg~~vltt~Rliw~~p~~~~~~~~~~~~pls~vI 99 (432)
T KOG2760|consen 39 RSQNETLLLTSQRIIIYDGDKKTTKFDDGTLVLTTHRLIWRSPTSSADVEVTWVCPLSMVI 99 (432)
T ss_pred hccCceEEEeecceEEecCCCccccccchhhhhhhceeeecCcccccccceeeeeceeEEE
Confidence 345788989999999864 2223346999999999999863 2355667788885543
No 18
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=57.26 E-value=57 Score=23.79 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=40.3
Q ss_pred CceeEEEEEEeeE--EEEeecCCCCceEEeecceeeee-ccCC--CCCceEEEecccCC
Q psy8646 83 GPARGILSVTNYK--LYFRSIDRETPYVVEVPLGVVSI-KLNT--RSNDIWFWLHKLKK 136 (191)
Q Consensus 83 G~v~G~L~iTNYr--L~F~s~d~~~~~~l~vPLg~Isr-Kigg--rg~D~lrFa~k~~~ 136 (191)
-...|+|+||+=| +.++....+.+-.+.+|+.-|.. ++.- ..+=||++..+..+
T Consensus 10 KK~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~ 68 (79)
T PF08567_consen 10 KKKDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDS 68 (79)
T ss_dssp TTEEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEEETTSC
T ss_pred EcCCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEEEecCC
Confidence 4678999999999 99988765444479999999988 6642 34445888887763
No 19
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=55.74 E-value=5.5 Score=34.90 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=18.9
Q ss_pred CCCCCCCCceeEEeecceEEecCCCCceeEE
Q psy8646 58 DDLPLLPGEIIQGFAREVTYLCPYSGPARGI 88 (191)
Q Consensus 58 ~~~~LLPGE~i~~~a~~V~ylcp~~G~v~G~ 88 (191)
.+++.--|..-+...-.-+|||||.|.|-|.
T Consensus 69 teI~I~~g~p~VNE~TkkIYICPFTGKVF~D 99 (238)
T PF10915_consen 69 TEIKIQSGKPSVNEQTKKIYICPFTGKVFGD 99 (238)
T ss_pred eeEEEecCCcccccccceEEEcCCcCccccC
Confidence 4444445544443333446999999988664
No 20
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=55.08 E-value=14 Score=29.32 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=18.7
Q ss_pred EEEEEEeeEEEEee-cCCCCceEEeecceeee
Q psy8646 87 GILSVTNYKLYFRS-IDRETPYVVEVPLGVVS 117 (191)
Q Consensus 87 G~L~iTNYrL~F~s-~d~~~~~~l~vPLg~Is 117 (191)
|+|+||+=+|+|-+ .... ..+.||...|+
T Consensus 1 g~L~Vt~~~l~w~~~~~~~--~G~~ipY~sI~ 30 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNEDSS--KGFSIPYPSIS 30 (135)
T ss_dssp EEEEEETTEEEEEET--TT--EEEEESS---S
T ss_pred CEEEEecCEEEEECCCcCC--cceeecCCeEE
Confidence 89999999999988 3333 45666664443
No 21
>KOG3238|consensus
Probab=49.58 E-value=22 Score=31.06 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=27.2
Q ss_pred eEEEEEEeeEEEEeecCCCCceEEeec---ceeeee
Q psy8646 86 RGILSVTNYKLYFRSIDRETPYVVEVP---LGVVSI 118 (191)
Q Consensus 86 ~G~L~iTNYrL~F~s~d~~~~~~l~vP---Lg~Isr 118 (191)
.||||||--+|+.-+.+..+-|.+++| |..|||
T Consensus 35 ~GTlYIa~s~LsWl~~~~akGfSvey~~IsLHaiSr 70 (216)
T KOG3238|consen 35 TGTLYIAESTLSWLSTSGAKGFSVEYPTISLHAISR 70 (216)
T ss_pred cceEEEecceEEeeecccccceeeecceeEEEeeeC
Confidence 599999999999999777667766655 588888
No 22
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=39.91 E-value=47 Score=24.57 Aligned_cols=31 Identities=32% Similarity=0.572 Sum_probs=19.6
Q ss_pred cCCCCceeEEEEEE---eeEEEEeecCCCCceEEe
Q psy8646 79 CPYSGPARGILSVT---NYKLYFRSIDRETPYVVE 110 (191)
Q Consensus 79 cp~~G~v~G~L~iT---NYrL~F~s~d~~~~~~l~ 110 (191)
++..|-..|.-.|+ ||||+|+..+.+ ...++
T Consensus 55 h~L~G~~~g~~Si~i~~~~RliF~~~~~~-~~~v~ 88 (93)
T PF05015_consen 55 HKLKGDRKGQWSIRINGNWRLIFRFEDGD-AYDVD 88 (93)
T ss_pred ccccCCCCCcEEEEeCCCEEEEEEEeCCC-EEEEE
Confidence 45555555555544 899999988764 34443
No 23
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=32.81 E-value=1.4e+02 Score=23.41 Aligned_cols=61 Identities=25% Similarity=0.254 Sum_probs=39.0
Q ss_pred eeEEEEEEeeEEEEeecCCCCceEEeecceeeee--ccCC--------CCCce-EEEecccCCchhhHHHHHHHhhcc
Q psy8646 85 ARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI--KLNT--------RSNDI-WFWLHKLKKSLEDEMLFDEVQQYA 151 (191)
Q Consensus 85 v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr--Kigg--------rg~D~-lrFa~k~~~~~~~~~vfe~L~~~a 151 (191)
-.|.|-||.+.|+|.....+ .+.-||..|-| ..++ ||..= =.|+|+-. .+.++|..++.+.
T Consensus 21 g~g~L~vt~~~L~l~~~~~~---~~~WPl~~LRRYG~d~~~FsFEAGRRC~tGeG~f~F~t~---~~~~if~~v~~~I 92 (102)
T cd01202 21 GSGWLELTRTELTLYISGKE---PVVWPLLCLRRYGYNSDLFSFESGRRCQTGEGIFAFRCK---RAEELFNLLQSYI 92 (102)
T ss_pred eeEEEEecceEEEEEcCCCC---EEEccHHHhHhhccCCCEEEEEccCcCCCCCCEEEEEcC---CHHHHHHHHHHHH
Confidence 47999999999999754333 25669988877 3322 22211 23444432 2688999888765
No 24
>KOG4347|consensus
Probab=29.98 E-value=85 Score=31.84 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=33.3
Q ss_pred cCCC-CceeEEEEEEeeEEEEeecCCCCceEEeecceeeee--ccC
Q psy8646 79 CPYS-GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI--KLN 121 (191)
Q Consensus 79 cp~~-G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr--Kig 121 (191)
-|++ -+..|.|+++...+-|++.+. +...+-+||..|-+ |+.
T Consensus 32 ~p~s~~~~~G~l~~s~~f~cF~s~~~-~~c~~~~Pl~~vr~ve~~~ 76 (671)
T KOG4347|consen 32 TPYSRYHEQGRLFLSTNFICFASDTE-WLCSFITPLLAVRSVERLD 76 (671)
T ss_pred CCcchhhccceeeeccceEEeecCCc-ccceEeeehhhhhhhhccC
Confidence 4766 368899999999999998874 34789999977766 554
No 25
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=29.29 E-value=60 Score=23.01 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=15.3
Q ss_pred CCceeE--EEEEE-eeEEEEeecC
Q psy8646 82 SGPARG--ILSVT-NYKLYFRSID 102 (191)
Q Consensus 82 ~G~v~G--~L~iT-NYrL~F~s~d 102 (191)
.|...| .+.|. +||++|+-.+
T Consensus 45 ~G~~~g~~r~rig~dyRIIY~i~~ 68 (80)
T TIGR02116 45 KGDLSGYWSRRITDEHRLVYRVTD 68 (80)
T ss_pred CCCCCCcEEEEcCCCeEEEEEEEC
Confidence 344455 78899 9999998544
No 26
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=26.66 E-value=62 Score=24.79 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.5
Q ss_pred ecceEEecCCCCceeEEEEEEee
Q psy8646 72 AREVTYLCPYSGPARGILSVTNY 94 (191)
Q Consensus 72 a~~V~ylcp~~G~v~G~L~iTNY 94 (191)
..||++-+|.-|.++|.|.|.|-
T Consensus 24 V~DV~veHp~YG~i~~~L~i~sr 46 (98)
T PF02829_consen 24 VLDVIVEHPVYGEITGNLNISSR 46 (98)
T ss_dssp EEEEEEEETTTEEEEEEEEE-SH
T ss_pred EEEEEEeCCCCcEEEEEEecCCH
Confidence 47899999999999999998764
No 27
>TIGR02385 RelE_StbE addiction module toxin, RelE/StbE family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all are found adjacent to RelB/DinJ family antitoxin genes (TIGR02384), as are most genes found by the resulting model. StbE from Morganella morganii plasmid R485 shows typical behaviour for an addiction module toxin. It cannot be cloned without its partner (the antitoxin), whereas its partner cannot confer plasmid stability without StbE.
Probab=24.24 E-value=82 Score=21.45 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=17.0
Q ss_pred cCCCCceeEE--EEEE-eeEEEEeecC
Q psy8646 79 CPYSGPARGI--LSVT-NYKLYFRSID 102 (191)
Q Consensus 79 cp~~G~v~G~--L~iT-NYrL~F~s~d 102 (191)
.|..|...|. +.+- ||+++|+-.+
T Consensus 46 ~pl~G~~~g~r~~~v~~~yriiY~i~~ 72 (88)
T TIGR02385 46 HPLTGSWKGTRECHIEPDYLLVYQVEE 72 (88)
T ss_pred ccccCCcCCeEEEEECCCEEEEEEECC
Confidence 3445555564 7788 9999998765
No 28
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=23.26 E-value=38 Score=24.84 Aligned_cols=13 Identities=0% Similarity=0.227 Sum_probs=10.7
Q ss_pred cEeechHHHHHhc
Q psy8646 178 WNIMNQYAELREN 190 (191)
Q Consensus 178 W~IYdp~~Ey~Rq 190 (191)
.+=|||.++|.||
T Consensus 49 YknYD~~kdFerM 61 (70)
T cd00927 49 YKTYDAMKDFERM 61 (70)
T ss_pred HHccChHHHHHHH
Confidence 3449999999997
No 29
>PF10341 TPP1: Shelterin complex subunit, TPP1/ACD; InterPro: IPR019437 EST3 is a component of the telomerase holoenzyme, involved in telomere replication. It has been demonstrated that Est3 dimerises and binds to DNA and RNA. Furthermore, Est3 stimulates the dissociation of RNA/DNA hetero-duplexes [, ]. ; GO: 0042162 telomeric DNA binding, 0007004 telomere maintenance via telomerase, 0032508 DNA duplex unwinding, 0000781 chromosome, telomeric region, 0005697 telomerase holoenzyme complex; PDB: 2I46_B.
Probab=21.24 E-value=1.7e+02 Score=21.73 Aligned_cols=29 Identities=14% Similarity=0.439 Sum_probs=18.7
Q ss_pred CceeEEEEEEeeEEEEeecCC-CCceEEee
Q psy8646 83 GPARGILSVTNYKLYFRSIDR-ETPYVVEV 111 (191)
Q Consensus 83 G~v~G~L~iTNYrL~F~s~d~-~~~~~l~v 111 (191)
+.....|.|.+|+|.|...+. .++|.+.|
T Consensus 77 ~t~g~li~I~~~~l~~~~~~~~~~~f~L~V 106 (106)
T PF10341_consen 77 STKGCLILIKDFNLVFQARSEASPEFVLQV 106 (106)
T ss_dssp T-TTEEEEEEEEEEEEE-BTTC--EEEEEE
T ss_pred cCCceEEEEEEEEEEEEECCCCCceEEEEC
Confidence 666788999999999984433 35665543
Done!