RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8646
(191 letters)
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 80.0 bits (196), Expect = 6e-18
Identities = 66/220 (30%), Positives = 102/220 (46%), Gaps = 36/220 (16%)
Query: 1 MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEPAQPSNN------------ 48
ME SS E L S+ S DSL S S S S NS + + S++
Sbjct: 4 METSSSCESLGSQPAAARPPSVDSLSSASTSHSENSVHTKSASVVSSDSISTSADNFSPD 63
Query: 49 ----NEPIQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRE 104
E + + ++ PLLPGE I+ A++VTY+CP++G RG L+VTNY+LYF+S++R+
Sbjct: 64 LRVLRESNKLAEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD 123
Query: 105 TPYVVEVPLGVVS---------------IKLNTRSNDIWFW-LHKLKKSLEDEMLFDEVQ 148
P+V++ LGV++ L T DI + +F+ +
Sbjct: 124 PPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLM 183
Query: 149 QYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELR 188
+YAFPVS+ + F + GW + + E R
Sbjct: 184 KYAFPVSN----NLPLFAFEYKEVFPENGWKLYDPLLEYR 219
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 75.7 bits (185), Expect = 1e-16
Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 20/144 (13%)
Query: 55 SRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLG 114
+ ++ PLLPGE I+ A++VTY+CP++G RG L+VTNY+LYF+S++R+ P+V++ LG
Sbjct: 2 ASMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLG 61
Query: 115 VV---------------SIKLNTRSNDIWFW-LHKLKKSLEDEMLFDEVQQYAFPVSHKL 158
V+ S L T DI + +F+ + +YAFPVS+
Sbjct: 62 VINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSN-- 119
Query: 159 CRIVSSIIEYTDNYFRKMGWNIMN 182
+ F + GW + +
Sbjct: 120 --NLPLFAFEYKEVFPENGWKLYD 141
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Length = 512
Score = 44.9 bits (105), Expect = 5e-06
Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 12/125 (9%)
Query: 75 VTYLCPYS---GPARGILSVTNYKLYFRSIDRETPYV-------VE-VPLGVVSIKLNTR 123
V L +S G L +T L F ++ ++ VE + L L +
Sbjct: 12 VKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQKETWILHHHIASVEKLALTTSGCPLVIQ 71
Query: 124 SNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQ 183
+ + + + +++ + Q + ++ S ++ R GW +++
Sbjct: 72 CKNFRTVHFIVPRERDCHDIYNSLLQLSKQAKYEDLY-AFSYNPKQNDSERLQGWQLIDL 130
Query: 184 YAELR 188
E +
Sbjct: 131 AEEYK 135
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.002
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 39/119 (32%)
Query: 55 SRPDDLPLLPGEIIQGFAREVTYL--CPYSGPARGILSVTNYKLYFRSIDRETPYVVEVP 112
P + P + YL P S P G++ + +Y + + + +
Sbjct: 220 ENPSNTP------------DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 113 LGVVSIKLNTRSNDI-----------W--FWLHKLKKSLEDEMLF---DEVQQYAFPVS 155
G S + W F ++K++ +LF + A+P +
Sbjct: 268 KGAT-----GHSQGLVTAVAIAETDSWESF-FVSVRKAI--TVLFFIGVRCYE-AYPNT 317
Score = 34.6 bits (79), Expect = 0.017
Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 62/168 (36%)
Query: 15 GHHCNASSDSLG------SDSKSSSLNS--KL----GQ--EPAQPSNNNEPIQTSRPDDL 60
GH SLG S + S+ S ++ G + A P + + S +
Sbjct: 1761 GH-------SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP---RDELGRSNYGMI 1810
Query: 61 PLLPGEIIQGFARE-VTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEV-----PLG 114
+ PG + F++E + Y+ + + T ++VE+
Sbjct: 1811 AINPGRVAASFSQEALQYVV-------------------ERVGKRTGWLVEIVNYNVE-N 1850
Query: 115 ---VVS--IK-LNTRSNDIWFWLHKLKK----SLEDEMLFDEVQQYAF 152
V + ++ L+T +N + F KL+K L+ + +EV+ + F
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNF--IKLQKIDIIELQKSLSLEEVEGHLF 1896
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 31.2 bits (71), Expect = 0.20
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 52 IQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGI 88
I+ + + E++ GF + +L P GI
Sbjct: 36 IERQDGPETKEVESEVV-GFNGQRLFLMPL-EEVEGI 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.29
Identities = 40/226 (17%), Positives = 67/226 (29%), Gaps = 83/226 (36%)
Query: 4 KSSIELLNSESGHHCNASSDSLG-SDSKSSSLNSK-LGQEPAQ-PSNNNEPIQTSRPDDL 60
K + L++ + H + S+ + + SL K L P P E + T+
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTN----- 326
Query: 61 PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYF---------RSIDRETP----- 106
P II R+ G A N+K S++ P
Sbjct: 327 PRRLS-IIAESIRD--------GLAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 107 -YV--------VEVPLGVVSI---------------KLNTRS------NDIWFWLH---- 132
+ +P ++S+ KL+ S + +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 133 KLKKSLEDE-----MLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYF 173
+LK LE+E + V Y P + + I Y D YF
Sbjct: 434 ELKVKLENEYALHRSI---VDHYNIPKTFDSDDL---IPPYLDQYF 473
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex,
metallophosphatase, exonuclease, endonuclease, RAD50,
NBS1, hydrolase; 3.00A {Homo sapiens}
Length = 431
Score = 26.8 bits (58), Expect = 5.0
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 5/121 (4%)
Query: 57 PDDLPLLPGEIIQGFAREVTYLCPYSGPARG--ILSVTNYKLYFRSIDRETP---YVVEV 111
P I Q + VT L P + +L + K+ I T ++ ++
Sbjct: 273 PTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQFFMEDI 332
Query: 112 PLGVVSIKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDN 171
L N + + + +EML + ++ +V ++Y+
Sbjct: 333 VLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEKPLVRLRVDYSGG 392
Query: 172 Y 172
+
Sbjct: 393 F 393
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: CIT; 1.65A {Thermotoga
maritima} SCOP: c.1.29.1
Length = 188
Score = 25.8 bits (57), Expect = 9.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 52 IQTSRPDDLPLLPGEIIQGFAREVT 76
I+T D + +LPG + AR++
Sbjct: 124 IETLGVDVVEVLPGAVAPKVARKIP 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.396
Gapped
Lambda K H
0.267 0.0453 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,753,429
Number of extensions: 146317
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 17
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.3 bits)