RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8646
         (191 letters)



>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2,
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 125

 Score = 91.1 bits (226), Expect = 1e-24
 Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 18/118 (15%)

Query: 58  DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
           ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV++
Sbjct: 1   EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIN 60

Query: 118 -----------------IKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKL 158
                            ++   +      + HK  +      +F+ + +YAFPVS+ L
Sbjct: 61  RVEKIGGASSRGENSYGLETVCKDIRNLRFAHK-PEGRTRRSIFENLMKYAFPVSNNL 117


>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related
           protein TM1436 {Thermotoga maritima [TaxId: 2336]}
          Length = 172

 Score = 25.8 bits (57), Expect = 2.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 52  IQTSRPDDLPLLPGEIIQGFAREVT 76
           I+T   D + +LPG +    AR++ 
Sbjct: 112 IETLGVDVVEVLPGAVAPKVARKIP 136


>d1jjga_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Myxoma
          virus, m156r [TaxId: 10273]}
          Length = 102

 Score = 24.9 bits (54), Expect = 3.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 37 KLGQEPAQPSNNNEPIQTSRPDDLPLLPGEIIQG 70
          K    P    N N  + T R   + L PG + +G
Sbjct: 5  KPSSRPRPRKNKNIKVNTYRTSAMDLSPGSVHEG 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 688,960
Number of extensions: 29661
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 8
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)