BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8647
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 141/216 (65%), Gaps = 4/216 (1%)
Query: 35 VIGIHDVRDKNIWRALIAELIGTFVLVFVGTGS-IMW--PNDPNTVDVTKIALTFGFVIA 91
++ V + W+A+ AE + + V + GS I W +P VD+ I+L FG IA
Sbjct: 40 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIA 99
Query: 92 TIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTP-NPC 150
T+ Q GH+SG HINPAVT+ + C+ IS+ K FYI QC+GA+ G+ +L VTP +
Sbjct: 100 TMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVV 159
Query: 151 CKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHL 210
LG+T ++ ++ A GL++E IITF LV T+ A CDD+RTD+ GSV +A+G ++ HL
Sbjct: 160 GGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHL 219
Query: 211 AAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPI 246
AI +TGASMNPAR+ GPAVI +W+N W+YW GPI
Sbjct: 220 FAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPI 255
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 141/216 (65%), Gaps = 4/216 (1%)
Query: 35 VIGIHDVRDKNIWRALIAELIGTFVLVFVGTGS-IMW--PNDPNTVDVTKIALTFGFVIA 91
++ V + W+A+ AE + + V + GS I W +P VD+ I+L FG IA
Sbjct: 1 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIA 60
Query: 92 TIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTP-NPC 150
T+ Q GH+SG HINPAVT+ + C+ IS+ K FYI QC+GA+ G+ +L VTP +
Sbjct: 61 TMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVV 120
Query: 151 CKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHL 210
LG+T ++ ++ A GL++E IITF LV T+ A CDD+RTD+ GSV +A+G ++ HL
Sbjct: 121 GGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHL 180
Query: 211 AAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPI 246
AI +TGASMNPAR+ GPAVI +W+N W+YW GPI
Sbjct: 181 FAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPI 216
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 140/216 (64%), Gaps = 4/216 (1%)
Query: 35 VIGIHDVRDKNIWRALIAELIGTFVLVFVGTGS-IMW--PNDPNTVDVTKIALTFGFVIA 91
++ V + W+A+ AE + + V + GS I W +P VD+ I+L FG IA
Sbjct: 1 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIA 60
Query: 92 TIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTP-NPC 150
T+ Q GH+SG HINPAVT+ + C+ IS+ K FYI QC+GA+ G+ +L VTP +
Sbjct: 61 TMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVV 120
Query: 151 CKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHL 210
LG+T ++ ++ A GL++E IITF LV T+ A CD +RTD+ GSV +A+G ++ HL
Sbjct: 121 GGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVALAIGFSVAIGHL 180
Query: 211 AAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPI 246
AI +TGASMNPAR+ GPAVI +W+N W+YW GPI
Sbjct: 181 FAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPI 216
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 136/207 (65%), Gaps = 4/207 (1%)
Query: 44 KNIWRALIAELIGTFVLVFVGTGS-IMW--PNDPNTVDVTKIALTFGFVIATIAQAIGHV 100
+ W+A+ AE + + V + GS I W P VD+ I+L FG IAT+ Q GH+
Sbjct: 1 QAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHI 60
Query: 101 SGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTP-NPCCKLGMTGLN 159
SG HINPAVT+ + C+ IS+ K FYI QC+GA+ G+ +L VTP + LG+T ++
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVH 120
Query: 160 PSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTGAS 219
++ A GL++E IITF LV T+ A CD +RTD+ GS+ +A+G ++ HL AI +TGAS
Sbjct: 121 GNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAINYTGAS 180
Query: 220 MNPARTLGPAVIGNHWDNIWVYWAGPI 246
MNPAR+ GPAVI +W+N W+YW GPI
Sbjct: 181 MNPARSFGPAVIMGNWENHWIYWVGPI 207
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 135/216 (62%), Gaps = 9/216 (4%)
Query: 40 DVRDKNIWRALIAELIGTFVLVFVGTGSIM---WPNDPNTV-----DVTKIALTFGFVIA 91
+ + K WRA++AE + + +F+ GS + +P N D K++L FG IA
Sbjct: 4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63
Query: 92 TIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPN-PC 150
T+AQ++GH+SG H+NPAVT+GL S IS+L+ YII QCVGA+ +A+L +T + P
Sbjct: 64 TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123
Query: 151 CKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHL 210
LG+ L P +N+ QGL IE I T LVL V A D RR D+ GS P+A+G ++ HL
Sbjct: 124 NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHL 183
Query: 211 AAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPI 246
AI +TG +NPAR+ G +VI +++ + W++W GP
Sbjct: 184 LAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPF 219
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 184 bits (466), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 133/214 (62%), Gaps = 7/214 (3%)
Query: 40 DVRDKNIWRALIAELIGTFVLVFVGTGSIM---WP---NDPNTVDVTKIALTFGFVIATI 93
+ + K WRA++AE + T + VF+ GS + +P N D K++L FG IAT+
Sbjct: 4 EFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATL 63
Query: 94 AQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPN-PCCK 152
AQ++GH+SG H+NPAVT+GL S IS+ + YII QCVGA+ +A+L +T +
Sbjct: 64 AQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNS 123
Query: 153 LGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAA 212
LG L +N+ QGL IE I T LVL V A D RR D+ GS P+A+GL++ HL A
Sbjct: 124 LGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLA 183
Query: 213 IKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPI 246
I +TG +NPAR+ G AVI +++ N W++W GP
Sbjct: 184 IDYTGCGINPARSFGSAVITHNFSNHWIFWVGPF 217
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 129/210 (61%), Gaps = 6/210 (2%)
Query: 40 DVRDKNIWRALIAELIGTFVLVFVGTG-SIMWPNDPNTVDVTKIALTFGFVIATIAQAIG 98
++R + WRA+ AE T VF G G S+ W P + V ++AL FG +AT+ QA+G
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRW--APGPLHVLQVALAFGLALATLVQAVG 60
Query: 99 HVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCK--LGMT 156
H+SG H+NPAVT +SLL+ Y++ Q +GAVAG+AVL +VTP P + L +
Sbjct: 61 HISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTP-PAVRGNLALN 119
Query: 157 GLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFT 216
L+P ++ Q I+E +T VL + A D+RR GSV +AVG ++T HL + +T
Sbjct: 120 TLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYT 179
Query: 217 GASMNPARTLGPAVIGNHWDNIWVYWAGPI 246
GA MNPAR+ PA++ ++ N WVYW GP+
Sbjct: 180 GAGMNPARSFAPAILTRNFTNHWVYWVGPV 209
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 127/208 (61%), Gaps = 6/208 (2%)
Query: 42 RDKNIWRALIAELIGTFVLVFVGTG-SIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHV 100
R + WRA+ AE T VF G G S+ W P + V ++AL FG +AT+ QA+GH+
Sbjct: 1 RSASFWRAIFAEFFATLFYVFFGLGASLRW--APGPLHVLQVALAFGLALATLVQAVGHI 58
Query: 101 SGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCK--LGMTGL 158
SG H+NPAVT +SLL+ Y++ Q +GAVAG+AVL +VTP P + L + L
Sbjct: 59 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTP-PAVRGNLALNTL 117
Query: 159 NPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTGA 218
+P ++ Q I+E +T VL + A D+RR GSV +AVG ++T HL + +TGA
Sbjct: 118 HPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGA 177
Query: 219 SMNPARTLGPAVIGNHWDNIWVYWAGPI 246
MNPAR+ PA++ ++ N WVYW GP+
Sbjct: 178 GMNPARSFAPAILTRNFTNHWVYWVGPV 205
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 129/210 (61%), Gaps = 6/210 (2%)
Query: 40 DVRDKNIWRALIAELIGTFVLVFVGTG-SIMWPNDPNTVDVTKIALTFGFVIATIAQAIG 98
++R + WRA+ AE + VF G G S+ W P + V ++AL FG +AT+ QA+G
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFGLGASLRW--APGPLHVLQVALAFGLALATLVQAVG 60
Query: 99 HVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCK--LGMT 156
H+SG H+NPAVT +SLL+ Y++ Q +GAVAG+AVL +VTP P + L +
Sbjct: 61 HISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTP-PAVRGNLALN 119
Query: 157 GLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFT 216
L+P ++ Q I+E +T VL + A D+RR GSV +AVG ++T HL + +T
Sbjct: 120 TLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYT 179
Query: 217 GASMNPARTLGPAVIGNHWDNIWVYWAGPI 246
GA MNPAR+ PA++ ++ N WVYW GP+
Sbjct: 180 GAGMNPARSFAPAILTRNFTNHWVYWVGPV 209
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 126/206 (61%), Gaps = 6/206 (2%)
Query: 44 KNIWRALIAELIGTFVLVFVGTG-SIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSG 102
+ WRA+ AE T VF G G S+ W P + V ++AL FG +AT+ QA+GH+SG
Sbjct: 1 ASFWRAIFAEFFATLFYVFFGLGASLRW--APGPLHVLQVALAFGLALATLVQAVGHISG 58
Query: 103 CHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCK--LGMTGLNP 160
H+NPAVT +SLL+ Y++ Q +GAVAG+AVL +VTP P + L + L+P
Sbjct: 59 AHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTP-PAVRGNLALNTLHP 117
Query: 161 SINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTGASM 220
++ Q I+E +T VL + A D+RR GSV +AVG ++T HL + +TGA M
Sbjct: 118 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGM 177
Query: 221 NPARTLGPAVIGNHWDNIWVYWAGPI 246
NPAR+ PA++ ++ N WVYW GP+
Sbjct: 178 NPARSFAPAILTRNFTNHWVYWVGPV 203
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 126/202 (62%), Gaps = 5/202 (2%)
Query: 48 RALIAELIGTFVLVFVGTGSIM-WPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHIN 106
+A+ AE + T + VF G GS + WP+ T+ +IAL FG I T+AQA+G VSG HIN
Sbjct: 13 KAVFAEFLATLIFVFFGLGSALKWPSALPTI--LQIALAFGLAIGTLAQALGPVSGGHIN 70
Query: 107 PAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTP-NPCCKLGMTGLNPSINAT 165
PA+T+ L ISLL+ FFY+ Q VGA+AG+ +L V P N L + LN +
Sbjct: 71 PAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQG 130
Query: 166 QGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTGASMNPART 225
Q +++E I+TF L L + A D RRT GS +++GL++T HL I FTG SMNPAR+
Sbjct: 131 QAMVVELILTFQLALCIFASTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARS 190
Query: 226 LGPAVIGNHWDNI-WVYWAGPI 246
GPAV+ N + WV+W GPI
Sbjct: 191 FGPAVVMNRFSPAHWVFWVGPI 212
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 13/220 (5%)
Query: 40 DVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDP----NTVDVTKIALTFGFVIATIAQ 95
+++ + WRA IAE I T + +++ +++ + +V + IA FG +I +
Sbjct: 54 ELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVY 113
Query: 96 AIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGM 155
+SG HINPAVT GLF + +SLL+ Y+I QC+GA+ G +++A P + G
Sbjct: 114 CTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 173
Query: 156 TGLNPSINATQG--LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPV----AVGLAITCCH 209
+ ++ +G L E I TFVLV TV + D +R+ VP+ +G A+ H
Sbjct: 174 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 233
Query: 210 LAAIKFTGASMNPARTLGPAVIGNH---WDNIWVYWAGPI 246
LA I TG +NPAR+ G AVI N WD+ W++W GP
Sbjct: 234 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPF 273
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 130 bits (327), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 13/220 (5%)
Query: 40 DVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDPN----TVDVTKIALTFGFVIATIAQ 95
+++ + WRA IAE I T + +++ +++ + +V + IA FG +I +
Sbjct: 31 ELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVY 90
Query: 96 AIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGM 155
+SG HINPAVT GLF + +SLL+ Y+I QC+GA+ G +++A P + G
Sbjct: 91 CTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 150
Query: 156 TGLNPSINATQG--LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPV----AVGLAITCCH 209
+ ++ +G L E I TFVLV TV + D +R+ VP+ +G A+ H
Sbjct: 151 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 210
Query: 210 LAAIKFTGASMNPARTLGPAVIGNH---WDNIWVYWAGPI 246
LA I TG +NPAR+ G AVI N WD+ W++W GP
Sbjct: 211 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPF 250
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 130 bits (327), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 13/220 (5%)
Query: 40 DVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDP----NTVDVTKIALTFGFVIATIAQ 95
+++ + WRA IAE I T + +++ +++ + +V + IA FG +I +
Sbjct: 31 ELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVY 90
Query: 96 AIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGM 155
+SG HINPAVT GLF + +SLL+ Y+I QC+GA+ G +++A P + G
Sbjct: 91 CTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 150
Query: 156 TGLNPSINATQG--LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPV----AVGLAITCCH 209
+ ++ +G L E I TFVLV TV + D +R+ VP+ +G A+ H
Sbjct: 151 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 210
Query: 210 LAAIKFTGASMNPARTLGPAVIGNH---WDNIWVYWAGPI 246
LA I TG +NPAR+ G AVI N WD+ W++W GP
Sbjct: 211 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPF 250
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 13/220 (5%)
Query: 40 DVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDP----NTVDVTKIALTFGFVIATIAQ 95
+++ + WRA IAE I T + +++ +++ + +V + IA FG +I +
Sbjct: 54 ELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVY 113
Query: 96 AIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGM 155
+SG HINPAVT GLF + + LL+ Y+I QC+GA+ G +++A P + G
Sbjct: 114 CTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 173
Query: 156 TGLNPSINATQG--LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPV----AVGLAITCCH 209
+ ++ +G L E I TFVLV TV + D +R+ VP+ +G A+ H
Sbjct: 174 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 233
Query: 210 LAAIKFTGASMNPARTLGPAVIGNH---WDNIWVYWAGPI 246
LA I TG +NPAR+ G AVI N WD+ W++W GP
Sbjct: 234 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPF 273
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 13/220 (5%)
Query: 40 DVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDP----NTVDVTKIALTFGFVIATIAQ 95
+++ + WRA IAE I T + +++ +++ + +V + IA FG +I +
Sbjct: 50 ELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVY 109
Query: 96 AIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGM 155
+SG HINPAVT GLF + + LL+ Y+I QC+GA+ G +++A P + G
Sbjct: 110 CTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 169
Query: 156 TGLNPSINATQG--LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPV----AVGLAITCCH 209
+ ++ +G L E I TFVLV TV + D +R+ VP+ +G A+ H
Sbjct: 170 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVH 229
Query: 210 LAAIKFTGASMNPARTLGPAVIGNH---WDNIWVYWAGPI 246
LA I TG +NPAR+ G AVI N WD+ W++W GP
Sbjct: 230 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPF 269
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 112/219 (51%), Gaps = 28/219 (12%)
Query: 44 KNIWRALIAELIGTFVLVFVGTGS-IMWPNDPN-TVDVTKIALTFGFVIATIAQAIGHVS 101
+++R L AE GTF LVF G+GS ++ P + +AL FG + T+A A+GH+S
Sbjct: 2 SHMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHIS 61
Query: 102 GCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGLNPS 161
G H NPAVTIGL+ G + Y+I Q VG + +A+L + G TG + +
Sbjct: 62 GGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIAS------GKTGFDAA 115
Query: 162 IN--ATQG--------------LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAI 205
+ A+ G L++E +++ +L + D + G P+A+GLA+
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATD--KFAPAGFAPIAIGLAL 173
Query: 206 TCCHLAAIKFTGASMNPARTLGPAVIGNHW--DNIWVYW 242
T HL +I T S+NPAR+ A+ W + +W +W
Sbjct: 174 TLIHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 28/217 (12%)
Query: 46 IWRALIAELIGTFVLVFVGTGS-IMWPNDPN-TVDVTKIALTFGFVIATIAQAIGHVSGC 103
++R L AE GTF LVF G+GS ++ P + +AL FG + T+A A+GH+SG
Sbjct: 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG 63
Query: 104 HINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGLNPSIN 163
H NPAVTIGL+ G + Y+I Q VG + +A+L + G TG + + +
Sbjct: 64 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIAS------GKTGFDAAAS 117
Query: 164 --ATQG--------------LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITC 207
A+ G L++E +++ +L + D + G P+A+GLA+T
Sbjct: 118 GFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATD--KFAPAGFAPIAIGLALTL 175
Query: 208 CHLAAIKFTGASMNPARTLGPAVIGNHW--DNIWVYW 242
HL +I T S+NPAR+ A+ W + +W +W
Sbjct: 176 IHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 111/219 (50%), Gaps = 28/219 (12%)
Query: 44 KNIWRALIAELIGTFVLVFVGTGS-IMWPNDPN-TVDVTKIALTFGFVIATIAQAIGHVS 101
+++R L AE GTF LVF G+GS ++ P + +AL FG + T+A A+GH+S
Sbjct: 2 SHMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHIS 61
Query: 102 GCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGLNPS 161
G H NPAVTIGL+ G + Y+I Q VG + +A+L + G TG + +
Sbjct: 62 GGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIAS------GKTGFDAA 115
Query: 162 IN--ATQG--------------LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAI 205
+ A+ G L++E +++ +L + D + G P+A+GLA
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATD--KFAPAGFAPIAIGLAC 173
Query: 206 TCCHLAAIKFTGASMNPARTLGPAVIGNHW--DNIWVYW 242
T HL +I T S+NPAR+ A+ W + +W +W
Sbjct: 174 TLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 106/223 (47%), Gaps = 28/223 (12%)
Query: 51 IAELIGTFVLVFVGTGSI----------MWPNDPNTV--------DVTKIALTFGFVIAT 92
IAE IGTF+LVF G GS PN N D I L FGF IA
Sbjct: 9 IAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAA 68
Query: 93 IAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVL---EAVTPNP 149
A+G++SGCHINPAVTIGL+ + YII Q +GA GS + +
Sbjct: 69 SIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAAT 128
Query: 150 CCKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCH 209
LG T P I+ Q ++ E + TF+L++T+ + D R KG + +GL +
Sbjct: 129 VGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAP-KGFAGIIIGLTVAGII 187
Query: 210 LAAIKFTGASMNPARTLGPAVIG------NHWDNIWVYWAGPI 246
+G+S+NPART GP + + W+ +Y GPI
Sbjct: 188 TTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPI 230
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 28/217 (12%)
Query: 46 IWRALIAELIGTFVLVFVGTGS-IMWPNDPN-TVDVTKIALTFGFVIATIAQAIGHVSGC 103
++R L AE GTF LVF G GS ++ P + +AL FG + T+A A+GH+SG
Sbjct: 1 MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG 60
Query: 104 HINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGLNPSIN 163
H NPAVTIGL+ G + Y+I Q VG + +A+L + G TG + + +
Sbjct: 61 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIAS------GKTGFDAAAS 114
Query: 164 --ATQG--------------LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITC 207
A+ G L++E +++ +L + D + G P+A+GLA+T
Sbjct: 115 GFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATD--KFAPAGFAPIAIGLALTL 172
Query: 208 CHLAAIKFTGASMNPARTLGPAVIGNHW--DNIWVYW 242
HL +I T S+NPAR+ A+ W + +W +W
Sbjct: 173 IHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 209
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 28/219 (12%)
Query: 44 KNIWRALIAELIGTFVLVFVGTGS-IMWPNDPN-TVDVTKIALTFGFVIATIAQAIGHVS 101
+++R L AE GTF LVF G GS ++ P + +AL +G + T+A A+GH+S
Sbjct: 2 SHMFRKLAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHIS 61
Query: 102 GCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGLNPS 161
G H NPAVTIGL+ G + Y+I Q VG + +A+L + G TG + +
Sbjct: 62 GGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIAS------GKTGFDAA 115
Query: 162 IN--ATQG--------------LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAI 205
+ A+ G L++E +++ +L + D + G P+A+GLA+
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATD--KFAPAGFAPIAIGLAL 173
Query: 206 TCCHLAAIKFTGASMNPARTLGPAVIGNHW--DNIWVYW 242
T HL +I T S+NPAR+ A+ W + +W +W
Sbjct: 174 TLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 28/219 (12%)
Query: 44 KNIWRALIAELIGTFVLVFVGTGS-IMWPNDPN-TVDVTKIALTFGFVIATIAQAIGHVS 101
+++R L AE GTF LVF G GS ++ P + +AL FG + T+A A+GH+S
Sbjct: 2 SHMFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHIS 61
Query: 102 GCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGLNPS 161
G H NPAVTIGL+ G + Y+I Q VG + +A+L + G TG + +
Sbjct: 62 GGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIAS------GKTGFDAA 115
Query: 162 IN--ATQG--------------LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAI 205
+ A+ G L++E +++ +L + D + G P+A+GLA+
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATD--KFAPAGFAPIAIGLAL 173
Query: 206 TCCHLAAIKFTGASMNPARTLGPAVIGNHW--DNIWVYW 242
T L +I T S+NPAR+ A+ W + +W +W
Sbjct: 174 TLIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 108/225 (48%), Gaps = 27/225 (12%)
Query: 48 RALIAELIGTFVLVFVGTGSIM----------WPNDPNTV--------DVTKIALTFGFV 89
+ AE++GTF+LVF G G+ + PN+ N D I + F
Sbjct: 7 KRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALA 66
Query: 90 IATIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEA-VTPN 148
IA + ++G +SG HINPAVTI L+ G + YI+ Q +GA GS + A V P
Sbjct: 67 IAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPA 126
Query: 149 PCC--KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAIT 206
LG T P I Q ++ EAI TF+L+L + V D R G + +GL +
Sbjct: 127 AATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-PGFAGLVIGLTVG 185
Query: 207 CCHLAAIKFTGASMNPARTLGP----AVIG-NHWDNIWVYWAGPI 246
TG+S+NPART GP +++G N W +Y GPI
Sbjct: 186 GIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPI 230
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 48 RALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINP 107
+A++ E IGTF+L+ V G + P I LT G +I TI G+++G +NP
Sbjct: 146 QAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGGIITTI----GNITGSSLNP 201
Query: 108 AVTIGLFCSGH---ISLLKGF-FYIIMQCVGAVAGS 139
A T G + I+L + F Y+I VGAVA +
Sbjct: 202 ARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAA 237
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 28/219 (12%)
Query: 44 KNIWRALIAELIGTFVLVFVGTGS-IMWPNDPN-TVDVTKIALTFGFVIATIAQAIGHVS 101
+++R L AE GTF LVF G GS ++ P + +AL +G + T+A A+GH+S
Sbjct: 2 SHMFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHIS 61
Query: 102 GCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGLNPS 161
G H NPAVTIGL+ G + Y+I Q VG + +A+L + G TG + +
Sbjct: 62 GGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIAS------GKTGFDAA 115
Query: 162 IN--ATQG--------------LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAI 205
+ A+ G L++E +++ +L + D + G P+A+GLA+
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATD--KFAPAGFAPIAIGLAL 173
Query: 206 TCCHLAAIKFTGASMNPARTLGPAVIGNHW--DNIWVYW 242
T L +I T S+NPAR+ A+ W + +W +W
Sbjct: 174 TLIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 106/211 (50%), Gaps = 14/211 (6%)
Query: 48 RALIAELIGTFVLVFVGTGSIMWPND-PNT-VDVTKIALTFGFVIATIAQAIGHVSGCHI 105
R L+AE GTF LVF G GS ++ P + T +AL FG + T+A A+G +SG H
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHF 90
Query: 106 NPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAV-TPNPCCKLGMTGLNPSINA 164
NPAV++GL +G Y+I Q GA+ +A L + T LG N
Sbjct: 91 NPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEH 150
Query: 165 TQG-------LIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTG 217
+ G L+IE I+T ++ + R G P+A+GLA+T HL +I T
Sbjct: 151 SPGGYSLVSALLIEIILTAFFLIVILGSTHGRVP--AGFAPIAIGLALTLIHLISIPVTN 208
Query: 218 ASMNPARTLGPAVIGNHW--DNIWVYWAGPI 246
S+NPAR+ G A+ W +W++W PI
Sbjct: 209 TSVNPARSTGQALFVGGWALQQLWLFWLAPI 239
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 106/237 (44%), Gaps = 18/237 (7%)
Query: 21 PAENNLKDSIRMRGVIGIHDVRDKNIWRALIAELIGTFVLVF----VGTGSIMWPNDP-- 74
P N R G VR+ I A+ E +GTF+ ++ + + P P
Sbjct: 21 PYITNAYKPAYARWGFGSDSVRNHFI--AMSGEFVGTFLFLWSAFVIAQIANQAPETPDG 78
Query: 75 --NTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQC 132
N + I+ FGF + VSG ++NPAVT+ L + I +G Q
Sbjct: 79 GSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQI 138
Query: 133 VGAVAGSAVLEAVTPNPCCKLGMTGLNPSINATQGLIIEAIITFVLVLTVE--AVCDDRR 190
V +A + A+TP G S T+GL +EA T +L LTV AV R
Sbjct: 139 VAGMAAAGAASAMTPGEIAFANALGGGAS--RTRGLFLEAFGTAILCLTVLMLAVEKHRA 196
Query: 191 TDIKGSVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGNHWDNI-WVYWAGPI 246
T P +G+A+ HL I +TGA +NPAR+ GPAV + N W+YW GPI
Sbjct: 197 TWF---APFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPI 250
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 51 IAELIGTFVLVFVGTGSIMWPNDPN-TVDVTKIALTFGFVIATIAQAIGHVSGCHINPAV 109
IAE +GT +L+F G G + + +I++ FG +A VSG H+NPAV
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAV 71
Query: 110 TIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGL----------- 158
TI L+ K +I+ Q GA +A++ + N T
Sbjct: 72 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDL 131
Query: 159 --------NPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSV-PVAVGLAITCCH 209
NP IN Q +E +IT +L+ + A+ DD +G + P+ +GL I
Sbjct: 132 AGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIG 191
Query: 210 LAAIKFTGASMNPARTLGPAVIG--NHWDNI 238
+ TG +MNPAR GP V W N+
Sbjct: 192 ASMGPLTGTAMNPARDFGPKVFAWLAGWGNV 222
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 51 IAELIGTFVLVFVGTGSIMWPNDPN-TVDVTKIALTFGFVIATIAQAIGHVSGCHINPAV 109
IAE +GT +L+F G G + + +I++ +G +A VSG H+NPAV
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAV 71
Query: 110 TIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGL----------- 158
TI L+ K +I+ Q GA +A++ + N T
Sbjct: 72 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDL 131
Query: 159 --------NPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSV-PVAVGLAITCCH 209
NP IN Q +E +IT +L+ + A+ DD +G + P+ +GL I
Sbjct: 132 AGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIG 191
Query: 210 LAAIKFTGASMNPARTLGPAVIG--NHWDNI 238
+ TG +MNPAR GP V W N+
Sbjct: 192 ASMGPLTGFAMNPARDFGPKVFAWLAGWGNV 222
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 15/206 (7%)
Query: 38 IHDVRDKNIWRALIAELIGTFVLVFVGTGSIM-WPNDPNTVDVTKIALTFGFVIATIAQA 96
+H + K+ R I E +GTFVL+F+G G+ + + D K+ L +G +
Sbjct: 1 MHMLFYKSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILV 60
Query: 97 IGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGM- 155
+SG H+N AV+IGL L K Y Q +GA G++ + + +
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIP 120
Query: 156 -----TGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPV-----AVGLAI 205
T NPSI+ T E I+T +L+L + V D+ +I G + VGL I
Sbjct: 121 QFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDE---NICGKFHILKLSSVVGLII 177
Query: 206 TCCHLAAIKFTGASMNPARTLGPAVI 231
C + TG ++NP+R LG +
Sbjct: 178 LCIGITFGGNTGFALNPSRDLGSRFL 203
>pdb|2WK1|A Chain A, Structure Of The O-Methyltransferase Novp
Length = 282
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 30 IRMRGVIGIHDVRDKNIW 47
I MRG++ HDVRD+ +W
Sbjct: 122 ILMRGILRAHDVRDRTVW 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,393,588
Number of Sequences: 62578
Number of extensions: 278996
Number of successful extensions: 763
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 34
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)