Query psy8647
Match_columns 274
No_of_seqs 173 out of 1382
Neff 7.6
Searched_HMMs 29240
Date Sat Aug 17 00:10:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 100.0 3.2E-54 1.1E-58 391.9 20.9 226 40-265 45-274 (340)
2 3gd8_A Aquaporin-4; proton exc 100.0 4.1E-53 1.4E-57 368.2 19.6 219 44-262 1-223 (223)
3 2zz9_A Aquaporin-4; water tran 100.0 2.1E-52 7.2E-57 376.8 23.3 228 38-265 4-235 (301)
4 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 3.8E-52 1.3E-56 370.4 19.4 226 39-265 4-231 (266)
5 2b6o_A Aquaporin-0, lens fiber 100.0 2.3E-51 7.9E-56 365.2 24.3 225 39-264 2-227 (263)
6 1j4n_A Aquaporin 1; membrane p 100.0 1.5E-51 5E-56 367.9 21.1 226 39-264 3-237 (271)
7 3cn5_A Aquaporin; membrane pro 100.0 1.7E-52 5.7E-57 378.2 13.9 233 33-265 47-292 (304)
8 2w2e_A AQY1, aquaporin, aquapo 100.0 1.7E-50 5.8E-55 361.8 21.2 219 44-265 42-269 (279)
9 3llq_A Aquaporin Z 2; aquapori 100.0 1.1E-50 3.9E-55 358.1 18.2 214 44-260 27-253 (256)
10 2o9g_A Aquaporin Z; integral m 100.0 6.2E-50 2.1E-54 350.6 18.5 215 45-262 3-232 (234)
11 1ldf_A Glycerol uptake facilit 100.0 7.1E-50 2.4E-54 359.0 16.7 220 44-263 5-258 (281)
12 2f2b_A Aquaporin AQPM; protein 100.0 9.9E-49 3.4E-53 345.6 17.3 216 45-261 3-245 (246)
13 3c02_A Aquaglyceroporin; membr 100.0 1.5E-49 5E-54 352.9 8.6 220 44-263 7-245 (258)
14 2f2b_A Aquaporin AQPM; protein 99.6 1.1E-15 3.9E-20 134.2 11.7 100 44-147 141-245 (246)
15 2b6o_A Aquaporin-0, lens fiber 99.4 1.1E-12 3.6E-17 116.3 13.0 103 44-150 125-227 (263)
16 2o9g_A Aquaporin Z; integral m 99.4 9E-13 3.1E-17 114.9 10.0 102 43-149 131-233 (234)
17 3d9s_A Aquaporin-5, AQP-5; aqu 99.4 2.2E-12 7.4E-17 114.4 11.2 103 44-150 127-230 (266)
18 3gd8_A Aquaporin-4; proton exc 99.4 2.4E-12 8.4E-17 111.3 11.0 100 44-147 123-222 (223)
19 3llq_A Aquaporin Z 2; aquapori 99.4 1.1E-12 3.9E-17 115.4 9.0 100 43-147 154-254 (256)
20 2w2e_A AQY1, aquaporin, aquapo 99.4 2.4E-12 8.1E-17 114.9 10.6 102 44-149 166-267 (279)
21 3iyz_A Aquaporin-4; water tran 99.4 3.9E-12 1.3E-16 115.6 11.4 102 44-149 171-272 (340)
22 2zz9_A Aquaporin-4; water tran 99.3 4.5E-12 1.5E-16 114.0 11.5 101 44-148 132-232 (301)
23 3cn5_A Aquaporin; membrane pro 99.3 1.4E-12 4.8E-17 117.5 7.4 106 44-149 182-290 (304)
24 1j4n_A Aquaporin 1; membrane p 99.3 5.1E-12 1.8E-16 112.3 9.6 100 46-149 137-236 (271)
25 1ldf_A Glycerol uptake facilit 99.3 8.8E-12 3E-16 111.4 9.3 104 44-149 143-258 (281)
26 3c02_A Aquaglyceroporin; membr 99.3 2.5E-12 8.4E-17 113.7 4.4 101 163-263 8-113 (258)
27 3kcu_A Probable formate transp 91.7 4.8 0.00017 35.3 14.2 102 80-187 69-184 (285)
28 3tds_E Formate/nitrite transpo 76.8 1.6 5.4E-05 38.1 3.2 172 79-265 64-261 (268)
29 4fc4_A Nitrite transporter NIR 61.4 20 0.00069 30.9 6.9 172 80-264 59-253 (261)
30 3kly_A Putative formate transp 41.9 1.7E+02 0.0058 25.2 12.6 104 80-187 68-183 (280)
31 3s2u_A UDP-N-acetylglucosamine 40.4 6 0.00021 35.3 0.1 18 101-118 12-29 (365)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=3.2e-54 Score=391.91 Aligned_cols=226 Identities=46% Similarity=0.839 Sum_probs=201.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhhccCCC---CCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHh
Q psy8647 40 DVRDKNIWRALIAELIGTFVLVFVGTGSIMWPN---DPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCS 116 (274)
Q Consensus 40 ~~~~~~~~~~~~~EfigTf~lv~~~~~~~~~~~---~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~ 116 (274)
+...+++||++++||+|||+|+|++++++++.. .....++..+++++|+++++.+++++++||||+|||||+++++.
T Consensus 45 ~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~ 124 (340)
T 3iyz_A 45 GVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT 124 (340)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHc
Confidence 344468899999999999999999999987431 12234677899999999999999999999999999999999999
Q ss_pred cCCCccchhhhHhHHhHHHHHHHHHHHHhcCCCCC-CcccccCCCCCChhHHHHHHHHHHHHHHHHhhheecCCCCCCCC
Q psy8647 117 GHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCC-KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKG 195 (274)
Q Consensus 117 g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~ 195 (274)
|+++|.+++.|+++|++|+++|+.+++.++++... +++.+.+.++.+..++++.|+++||+|+++++.+.|+++.....
T Consensus 125 G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~~~ 204 (340)
T 3iyz_A 125 RKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTG 204 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCCccc
Confidence 99999999999999999999999999999987553 45666777788999999999999999999999998877654456
Q ss_pred chhHHHHHHHHHHHHhhccCcCCcccchhhHHHHHhhcCCCceeehhhhhhHHHHHHHHHHHHHhccCCC
Q psy8647 196 SVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGAGCLCLCHSMPS 265 (274)
Q Consensus 196 ~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~~~~~~wvy~v~p~~Ga~~a~~l~~~l~~~~~~ 265 (274)
..|+.||+.+..+...++++||++|||||+|||+++.++|+++||||+||++|+++|+++|++++.+.++
T Consensus 205 ~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~~ 274 (340)
T 3iyz_A 205 SVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVE 274 (340)
T ss_pred chhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCChh
Confidence 7899999999888888889999999999999999999999999999999999999999999999976554
No 2
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.1e-53 Score=368.16 Aligned_cols=219 Identities=46% Similarity=0.851 Sum_probs=196.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCC---CCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCC
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPN---DPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHIS 120 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~---~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~ 120 (274)
+++||++++||+||++|++++++++++.. +.+..++..+++++|+++++.+++++++||||+|||||+++++.|+++
T Consensus 1 ~~~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~ 80 (223)
T 3gd8_A 1 QAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS 80 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCC
Confidence 46799999999999999999999987531 122346778999999999999999999999999999999999999999
Q ss_pred ccchhhhHhHHhHHHHHHHHHHHHhcCCCCC-CcccccCCCCCChhHHHHHHHHHHHHHHHHhhheecCCCCCCCCchhH
Q psy8647 121 LLKGFFYIIMQCVGAVAGSAVLEAVTPNPCC-KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPV 199 (274)
Q Consensus 121 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~ 199 (274)
|++.+.|+++|++|+++|+.+++.+++++.. +++.+.+.++.+..++++.|+++|++|+++++...|+++....+..|+
T Consensus 81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~pl 160 (223)
T 3gd8_A 81 IAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIAL 160 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCCCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCCccCCccH
Confidence 9999999999999999999999999886432 456677777889999999999999999999999988776555567899
Q ss_pred HHHHHHHHHHHhhccCcCCcccchhhHHHHHhhcCCCceeehhhhhhHHHHHHHHHHHHHhcc
Q psy8647 200 AVGLAITCCHLAAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGAGCLCLCHS 262 (274)
Q Consensus 200 ~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~~~~~~wvy~v~p~~Ga~~a~~l~~~l~~~ 262 (274)
.||+.+...+..++++||++|||||||+|+++.++|+++|+||++|++|+++|+++|++++.+
T Consensus 161 ~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p 223 (223)
T 3gd8_A 161 AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP 223 (223)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence 999999888888888999999999999999999999999999999999999999999998863
No 3
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=2.1e-52 Score=376.77 Aligned_cols=228 Identities=46% Similarity=0.831 Sum_probs=199.0
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHH
Q psy8647 38 IHDVRDKNIWRALIAELIGTFVLVFVGTGSIMWPND---PNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLF 114 (274)
Q Consensus 38 ~~~~~~~~~~~~~~~EfigTf~lv~~~~~~~~~~~~---~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~ 114 (274)
.++..++++||++++||+|||+|+|++++++++... ....++..+++++|+++++.+++++++||||+|||||++++
T Consensus 4 ~~~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~ 83 (301)
T 2zz9_A 4 FKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMV 83 (301)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHH
Confidence 345566789999999999999999999998875321 12335678999999999999999999999999999999999
Q ss_pred HhcCCCccchhhhHhHHhHHHHHHHHHHHHhcCCCCC-CcccccCCCCCChhHHHHHHHHHHHHHHHHhhheecCCCCCC
Q psy8647 115 CSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCC-KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDI 193 (274)
Q Consensus 115 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~ 193 (274)
+.|+++|++++.|+++|++|+++|+.+++.++++... +.+.+.+.+..+..++++.|+++|++|+++++.+.|+++...
T Consensus 84 ~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~~ 163 (301)
T 2zz9_A 84 CTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDV 163 (301)
T ss_dssp HTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGGTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSSSCC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 9999999999999999999999999999999987543 455666777889999999999999999999999888766544
Q ss_pred CCchhHHHHHHHHHHHHhhccCcCCcccchhhHHHHHhhcCCCceeehhhhhhHHHHHHHHHHHHHhccCCC
Q psy8647 194 KGSVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGAGCLCLCHSMPS 265 (274)
Q Consensus 194 ~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~~~~~~wvy~v~p~~Ga~~a~~l~~~l~~~~~~ 265 (274)
.+..|+.||+.+...+..++++||+++||||+|||+++.++|+++|+||+||++|+++|+++|++++.+.++
T Consensus 164 ~~~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~~w~~~WVy~vgPiiGailaa~ly~~l~~~~~~ 235 (301)
T 2zz9_A 164 TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVE 235 (301)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCTTTTHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred cchHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhCCCcceeeeeeHHHHHHHHHHHHHHHHhCCchh
Confidence 568999999999988888889999999999999999999999999999999999999999999999875443
No 4
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-52 Score=370.40 Aligned_cols=226 Identities=42% Similarity=0.701 Sum_probs=202.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcC
Q psy8647 39 HDVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGH 118 (274)
Q Consensus 39 ~~~~~~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~ 118 (274)
+|+++++++|++++||+|||+|+|++++++.... ....++..+++++|+++++.+++++++||||+|||||+++++.|+
T Consensus 4 ~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~-~~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~ 82 (266)
T 3d9s_A 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWP-SALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQ 82 (266)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCS-SSCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHTSS
T ss_pred hhhhChHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHHhcC
Confidence 4666788999999999999999999999886432 223467789999999999999999999999999999999999999
Q ss_pred CCccchhhhHhHHhHHHHHHHHHHHHhcCCCCC-CcccccCCCCCChhHHHHHHHHHHHHHHHHhhheecCCCCCCCCch
Q psy8647 119 ISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCC-KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSV 197 (274)
Q Consensus 119 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~ 197 (274)
++|++++.|+++|++|+++|+.+++.+++++.. ..+.+.|.++.+..++++.|+++|++|+++++.++|+++.......
T Consensus 83 ~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~~~~~ 162 (266)
T 3d9s_A 83 ISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSP 162 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTCCSCCCCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHccccccCceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchH
Confidence 999999999999999999999999999976432 4566667778899999999999999999999999887665445689
Q ss_pred hHHHHHHHHHHHHhhccCcCCcccchhhHHHHHhhcCCCc-eeehhhhhhHHHHHHHHHHHHHhccCCC
Q psy8647 198 PVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGNHWDN-IWVYWAGPILGGVLAGAGCLCLCHSMPS 265 (274)
Q Consensus 198 ~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~~~~~-~wvy~v~p~~Ga~~a~~l~~~l~~~~~~ 265 (274)
|+.||+.+..+++.++++||+++||||||||+++.++|++ +|+||+||++|+++|+++|++++.+.++
T Consensus 163 pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~ 231 (266)
T 3d9s_A 163 ALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSL 231 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcCCcccCEeeeehHHHHHHHHHHHHHHHHhCCCch
Confidence 9999999999999999999999999999999999999998 9999999999999999999999875443
No 5
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=2.3e-51 Score=365.15 Aligned_cols=225 Identities=40% Similarity=0.723 Sum_probs=200.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcC
Q psy8647 39 HDVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGH 118 (274)
Q Consensus 39 ~~~~~~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~ 118 (274)
+|+++++++|++++||+|||+|+++++++.... .....+...+++++|+++++.+++++++||+|+|||||+++++.|+
T Consensus 2 ~e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~-~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~g~ 80 (263)
T 2b6o_A 2 WELRSASFWRAIFAEFFATLFYVFFGLGASLRW-APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQ 80 (263)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHhcC
Confidence 466778899999999999999999999988642 2223356689999999999999999999999999999999999999
Q ss_pred CCccchhhhHhHHhHHHHHHHHHHHHhcCCCCC-CcccccCCCCCChhHHHHHHHHHHHHHHHHhhheecCCCCCCCCch
Q psy8647 119 ISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCC-KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSV 197 (274)
Q Consensus 119 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~ 197 (274)
++|.+.+.|+++|++|+++|+.+++.+++++.. .++.+.+.++.+..++++.|+++|++|+++++.+.|+++.......
T Consensus 81 ~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~~~~~ 160 (263)
T 2b6o_A 81 MSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV 160 (263)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSSCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTSCSSCCCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccH
Confidence 999999999999999999999999999987543 4566667778899999999999999999999999887665455689
Q ss_pred hHHHHHHHHHHHHhhccCcCCcccchhhHHHHHhhcCCCceeehhhhhhHHHHHHHHHHHHHhccCC
Q psy8647 198 PVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGAGCLCLCHSMP 264 (274)
Q Consensus 198 ~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~~~~~~wvy~v~p~~Ga~~a~~l~~~l~~~~~ 264 (274)
|+.||+.+.++++.++++||++|||||||||+++.++|+++|+||+||++|+++|+++|++++.+..
T Consensus 161 pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~ 227 (263)
T 2b6o_A 161 ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRL 227 (263)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHTCCTTCTHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred HHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcCCccceeHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999987543
No 6
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=1.5e-51 Score=367.90 Aligned_cols=226 Identities=41% Similarity=0.738 Sum_probs=198.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCC------C--CCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHH
Q psy8647 39 HDVRDKNIWRALIAELIGTFVLVFVGTGSIMWPN------D--PNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVT 110 (274)
Q Consensus 39 ~~~~~~~~~~~~~~EfigTf~lv~~~~~~~~~~~------~--~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvT 110 (274)
+|+++++++|++++||+||++|+|+++++++... + ....++..+++++|+++++.+++++++||||+|||||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVT 82 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHH
Confidence 4667788999999999999999999998876321 1 1122467899999999999999999999999999999
Q ss_pred HHHHHhcCCCccchhhhHhHHhHHHHHHHHHHHHhcCCCCC-CcccccCCCCCChhHHHHHHHHHHHHHHHHhhheecCC
Q psy8647 111 IGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCC-KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDR 189 (274)
Q Consensus 111 l~~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~ 189 (274)
+++++.|+++|++++.|+++|++|+++|+.+++.++++... ..+.+.+.++.+..++++.|+++|++|+++++.+.|++
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~~ 162 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRR 162 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999865332 34555556678889999999999999999999988876
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhccCcCCcccchhhHHHHHhhcCCCceeehhhhhhHHHHHHHHHHHHHhccCC
Q psy8647 190 RTDIKGSVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGAGCLCLCHSMP 264 (274)
Q Consensus 190 ~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~~~~~~wvy~v~p~~Ga~~a~~l~~~l~~~~~ 264 (274)
+.......|+.||+.+...+..++++||+++||||||||+++.++|+++|+||+||++|+++|+++|++++.++.
T Consensus 163 ~~~~~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~~~~~~wv~~vgP~~Ga~la~~~y~~~~~~~~ 237 (271)
T 1j4n_A 163 RRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRS 237 (271)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred CCCccccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhCCCcceeHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 654456899999999998888888899999999999999999999999999999999999999999999987543
No 7
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=1.7e-52 Score=378.22 Aligned_cols=233 Identities=33% Similarity=0.599 Sum_probs=197.9
Q ss_pred ccccCcCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCC----CCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchH
Q psy8647 33 RGVIGIHDVRDKNIWRALIAELIGTFVLVFVGTGSIMWPN----DPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPA 108 (274)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~EfigTf~lv~~~~~~~~~~~----~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPA 108 (274)
+..++..|+++.+++|++++||+|||+|+|+++++++... +....++..+++++|+++++.+|+++++||||+|||
T Consensus 47 ~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPA 126 (304)
T 3cn5_A 47 APFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPA 126 (304)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHH
T ss_pred ccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeeccCCCccCcH
Confidence 3445667888889999999999999999999998876421 123345678999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhHhHHhHHHHHHHHHHHHhcCCCCC--CcccccCCCCCChhHHHHHHHHHHHHHHHHhhhee
Q psy8647 109 VTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCC--KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVC 186 (274)
Q Consensus 109 vTl~~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~ 186 (274)
||+++++.|+++|++++.|+++|++|+++|+.+++.++++... +.+.+.+.++.+..++++.|+++|++|+++++..+
T Consensus 127 VTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~TfiLv~~Il~~~ 206 (304)
T 3cn5_A 127 VTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSAT 206 (304)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCCccHHHHHHHHHHHHHHHHHHHhhee
Confidence 9999999999999999999999999999999999999876432 23344566678899999999999999999999888
Q ss_pred cCCCCCCCC----chhHHHHHHHHHHHHhhccCcCCcccchhhHHHHHh---hcCCCceeehhhhhhHHHHHHHHHHHHH
Q psy8647 187 DDRRTDIKG----SVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVI---GNHWDNIWVYWAGPILGGVLAGAGCLCL 259 (274)
Q Consensus 187 ~~~~~~~~~----~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~---~~~~~~~wvy~v~p~~Ga~~a~~l~~~l 259 (274)
|+++...+. +.|+.||+++.++++..+++||+++||||||||+++ .++|+++|+||+||++|+++|+++|+++
T Consensus 207 d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l 286 (304)
T 3cn5_A 207 DPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 286 (304)
T ss_dssp EEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTT
T ss_pred cCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHHHHHHHHHHHH
Confidence 765543333 899999999999999999999999999999999999 6689999999999999999999999999
Q ss_pred hccCCC
Q psy8647 260 CHSMPS 265 (274)
Q Consensus 260 ~~~~~~ 265 (274)
+.+.+.
T Consensus 287 ~~~~~~ 292 (304)
T 3cn5_A 287 LRAAAI 292 (304)
T ss_dssp SCCCC-
T ss_pred hCCCCC
Confidence 886543
No 8
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=1.7e-50 Score=361.80 Aligned_cols=219 Identities=30% Similarity=0.467 Sum_probs=191.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc--CCCC------CCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHH
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIM--WPND------PNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFC 115 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~--~~~~------~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l 115 (274)
++.+|++++||+|||+|+|++++++. +... ....++..+++++|+++++.+++++++||||+|||||+++++
T Consensus 42 ~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~ 121 (279)
T 2w2e_A 42 RNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVL 121 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHHH
Confidence 68899999999999999999988642 1110 111235679999999999999999999999999999999999
Q ss_pred hcCCCccchhhhHhHHhHHHHHHHHHHHHhcCCCCCCcccccCCCCCChhHHHHHHHHHHHHHHHHhhheecCCCCCCCC
Q psy8647 116 SGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKG 195 (274)
Q Consensus 116 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~ 195 (274)
.|+++|++++.|+++|++|+++|+.+++.++++.. ...+.|.++.+..++++.|+++|++|+++++.+.++++. .+.
T Consensus 122 ~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~--~~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~-~~~ 198 (279)
T 2w2e_A 122 ARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI--AFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR-ATW 198 (279)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC--CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST-TGG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc--eeeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCC-CcC
Confidence 99999999999999999999999999999998764 345667777889999999999999999999988765443 345
Q ss_pred chhHHHHHHHHHHHHhhccCcCCcccchhhHHHHHhhcCC-CceeehhhhhhHHHHHHHHHHHHHhccCCC
Q psy8647 196 SVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGNHW-DNIWVYWAGPILGGVLAGAGCLCLCHSMPS 265 (274)
Q Consensus 196 ~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~~~-~~~wvy~v~p~~Ga~~a~~l~~~l~~~~~~ 265 (274)
+.|+.||+.+.++++..+++||++|||||||||+++++.| +++|+||+||++|+++|+++|++++..+.+
T Consensus 199 ~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~~ 269 (279)
T 2w2e_A 199 FAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQ 269 (279)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 8999999999999999999999999999999999998754 689999999999999999999999865443
No 9
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.1e-50 Score=358.14 Aligned_cols=214 Identities=33% Similarity=0.552 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCCc
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPN--DPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISL 121 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~--~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~~ 121 (274)
++++|++++||+|||+|++++++++.... .....++..+++++|+++++.+++++++||||+|||||+++++.|+++|
T Consensus 27 ~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 106 (256)
T 3llq_A 27 YVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPA 106 (256)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcCCCH
Confidence 67899999999999999999999865221 2233457789999999999999999999999999999999999999999
Q ss_pred cchhhhHhHHhHHHHHHHHHHHHhcCCCC---------CCcccccCCCCCChhHHHHHHHHHHHHHHHHhhheecCCCCC
Q psy8647 122 LKGFFYIIMQCVGAVAGSAVLEAVTPNPC---------CKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTD 192 (274)
Q Consensus 122 ~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~ 192 (274)
++.+.|+++|++|+++|+.+++.++++.. .+.+++.|. ..+..++++.|+++|++|+++++.+.|+++.
T Consensus 107 ~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~-~~s~~~~f~~E~i~Tf~Lv~~il~~~d~~~~- 184 (256)
T 3llq_A 107 SSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPG-GYSLVSALLIEIILTAFFLIVILGSTHGRVP- 184 (256)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTT-CCCHHHHHHHHHHHHHHHHHHHHHHHSTTSC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCc-ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCC-
Confidence 99999999999999999999999885321 134455664 6688999999999999999999998886653
Q ss_pred CCCchhHHHHHHHHHHHHhhccCcCCcccchhhHHHHHhhcC--CCceeehhhhhhHHHHHHHHHHHHHh
Q psy8647 193 IKGSVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGNH--WDNIWVYWAGPILGGVLAGAGCLCLC 260 (274)
Q Consensus 193 ~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~~--~~~~wvy~v~p~~Ga~~a~~l~~~l~ 260 (274)
..+.|+.||+.+.++.+..+++||++|||||||||+++.++ |+++|+||+||++|+++|+++|+++.
T Consensus 185 -~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 185 -AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred -ccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999999999999999765 56899999999999999999999884
No 10
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=6.2e-50 Score=350.63 Aligned_cols=215 Identities=33% Similarity=0.599 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCC--CCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCCcc
Q psy8647 45 NIWRALIAELIGTFVLVFVGTGSIMWPN--DPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLL 122 (274)
Q Consensus 45 ~~~~~~~~EfigTf~lv~~~~~~~~~~~--~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~~~ 122 (274)
+++|++++||+||++|+|++++++.... .+...++..+++++|+++++.+++++++||||+|||||+++++.|+++|+
T Consensus 3 ~l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 82 (234)
T 2o9g_A 3 HMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAK 82 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCHH
Confidence 3689999999999999999998865322 12233567899999999999999999999999999999999999999999
Q ss_pred chhhhHhHHhHHHHHHHHHHHHhcCCCC-----------CCcccccCCCCCChhHHHHHHHHHHHHHHHHhhheecCCCC
Q psy8647 123 KGFFYIIMQCVGAVAGSAVLEAVTPNPC-----------CKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRT 191 (274)
Q Consensus 123 ~~~~yi~aQ~lGa~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~ 191 (274)
+.+.|+++|++|+++|+.+++.++++.. .+.+++.|. +.+..++++.|+++|++|+++++..+|+++
T Consensus 83 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~-~~~~~~~~~~E~i~T~~Lv~~i~~~~d~~~- 160 (234)
T 2o9g_A 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPG-GYSMLSALVVELVLSAGFLLVIHGATDKFA- 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTT-CCCHHHHHHHHHHHHHHHHHHHHHHTSTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCC-ccchHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 9999999999999999999999987532 134556665 678999999999999999999999887544
Q ss_pred CCCCchhHHHHHHHHHHHHhhccCcCCcccchhhHHHHHhhcCC--CceeehhhhhhHHHHHHHHHHHHHhcc
Q psy8647 192 DIKGSVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGNHW--DNIWVYWAGPILGGVLAGAGCLCLCHS 262 (274)
Q Consensus 192 ~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~~~--~~~wvy~v~p~~Ga~~a~~l~~~l~~~ 262 (274)
.+...|+.||+.+.++++..+++||+++||||||||++++++| +++|+||++|++|+++|+++|++++++
T Consensus 161 -~~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~~ 232 (234)
T 2o9g_A 161 -PAGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232 (234)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred -ccchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHHHHHHHHHHcCC
Confidence 3458999999999999999999999999999999999998765 599999999999999999999999764
No 11
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=7.1e-50 Score=359.02 Aligned_cols=220 Identities=29% Similarity=0.364 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCCcc
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPN-DPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLL 122 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~~~ 122 (274)
++++|++++||+|||+|+|+++++++... .+...+...+++++|+++++.+++++++||||+|||||+++++.|+++|+
T Consensus 5 ~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 84 (281)
T 1ldf_A 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKR 84 (281)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCCCHH
Confidence 45789999999999999999998765321 11223455699999999999999999999999999999999999999999
Q ss_pred chhhhHhHHhHHHHHHHHHHHHhcCCCC-------------------CCcccccCCCCCChhHHHHHHHHHHHHHHHHhh
Q psy8647 123 KGFFYIIMQCVGAVAGSAVLEAVTPNPC-------------------CKLGMTGLNPSINATQGLIIEAIITFVLVLTVE 183 (274)
Q Consensus 123 ~~~~yi~aQ~lGa~~g~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl 183 (274)
+.+.|+++|++|+++|+.+++.++++.. .+.+++.|.++.+..++++.|+++|++|+++++
T Consensus 85 ~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~~il 164 (281)
T 1ldf_A 85 KVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLIL 164 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986421 024567787788999999999999999999999
Q ss_pred heecCCCCC-CCCchhHHHHHHHHHHHHhhccCcCCcccchhhHHHHHhhc-------C------CCceeehhhhhhHHH
Q psy8647 184 AVCDDRRTD-IKGSVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGN-------H------WDNIWVYWAGPILGG 249 (274)
Q Consensus 184 ~~~~~~~~~-~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~-------~------~~~~wvy~v~p~~Ga 249 (274)
.+.|+++.. .+.+.|+.||+.+.++++..+++||++|||||||||+++.. . |.|+||||++|++|+
T Consensus 165 ~~~d~~~~~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~vgPi~Ga 244 (281)
T 1ldf_A 165 ALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGA 244 (281)
T ss_dssp HHHCTTSSSCCGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHHHHHHH
T ss_pred HHhccCCCCcccchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHhHHHHHHH
Confidence 998876643 34589999999999999999999999999999999999851 2 227999999999999
Q ss_pred HHHHHHHHHHhccC
Q psy8647 250 VLAGAGCLCLCHSM 263 (274)
Q Consensus 250 ~~a~~l~~~l~~~~ 263 (274)
++|+++|++++.++
T Consensus 245 ~la~~~y~~l~~~~ 258 (281)
T 1ldf_A 245 IVGAFAYRKLIGRH 258 (281)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999998753
No 12
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=9.9e-49 Score=345.59 Aligned_cols=216 Identities=37% Similarity=0.555 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCC---CC---------------CCCCchHHHHHHHHHHHHHHHhhcccCCcccc
Q psy8647 45 NIWRALIAELIGTFVLVFVGTGSIMWPN---DP---------------NTVDVTKIALTFGFVIATIAQAIGHVSGCHIN 106 (274)
Q Consensus 45 ~~~~~~~~EfigTf~lv~~~~~~~~~~~---~~---------------~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~N 106 (274)
+++|++++||+||++|+|++++++.... ++ +..++..+++++|+++++.+++++++||||+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 4689999999999999999998766321 00 01123459999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCccchhhhHhHHhHHHHHHHHHHHHhcCCCC---CCcccccCCCCCChhHHHHHHHHHHHHHHHHhh
Q psy8647 107 PAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPC---CKLGMTGLNPSINATQGLIIEAIITFVLVLTVE 183 (274)
Q Consensus 107 PAvTl~~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl 183 (274)
||||+++++.|+++|++.+.|+++|++|+++|+.+++.+++++. .+.+++.|.++.+..++++.|+++|++|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999998732 256778887788999999999999999999999
Q ss_pred heecCCCCCCCCchhHHHHHHHHHHHHhhccCcCCcccchhhHHHHHh--h----cCCCceeehhhhhhHHHHHHHHHHH
Q psy8647 184 AVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVI--G----NHWDNIWVYWAGPILGGVLAGAGCL 257 (274)
Q Consensus 184 ~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~--~----~~~~~~wvy~v~p~~Ga~~a~~l~~ 257 (274)
...++++.. ....|+.+|+.+.+.++..+++||+++||||||+|++. . .+|+|.|+||++|++|+++|+++|+
T Consensus 163 ~~~~~~~~~-~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~ 241 (246)
T 2f2b_A 163 GIAVDERAP-KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQ 241 (246)
T ss_dssp HHTTSTTSC-TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCC-CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHH
Confidence 876544432 56899999999999999999999999999999999993 2 4788899999999999999999999
Q ss_pred HHhc
Q psy8647 258 CLCH 261 (274)
Q Consensus 258 ~l~~ 261 (274)
++++
T Consensus 242 ~l~~ 245 (246)
T 2f2b_A 242 YLTS 245 (246)
T ss_dssp HHTC
T ss_pred HHcC
Confidence 9875
No 13
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=1.5e-49 Score=352.91 Aligned_cols=220 Identities=28% Similarity=0.371 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCCcc
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPN-DPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLL 122 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~~~ 122 (274)
++++|++++||+|||+|+|+++++++... .+...++..+++++|+++++.+++++++||||+|||||+++++.|+++|+
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 86 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLK 86 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCCcHH
Confidence 45789999999999999999998776321 11234677899999999999999999999999999999999999999999
Q ss_pred chhhhHhHHhHHHHHHHHHHHHhcCCCCC-----Cc-ccccCCCCCChhHHHHHHHHHHHHHHHHhhheecCCCC-CCCC
Q psy8647 123 KGFFYIIMQCVGAVAGSAVLEAVTPNPCC-----KL-GMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRT-DIKG 195 (274)
Q Consensus 123 ~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~-~~~~ 195 (274)
+.+.|+++|++|+++|+.+++.++++... .. +........+..++++.|+++|++|+++++.++|+++. ..+.
T Consensus 87 ~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d~~~~~~~~~ 166 (258)
T 3c02_A 87 KIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGKFHI 166 (258)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhCcccCCcccc
Confidence 99999999999999999999999875321 00 11112223445669999999999999999999876653 2345
Q ss_pred ch-hHHHHHHHHHHHHhhccCcCCcccchhhHHHHHhhc------CC----CceeehhhhhhHHHHHHHHHHHHHhccC
Q psy8647 196 SV-PVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGN------HW----DNIWVYWAGPILGGVLAGAGCLCLCHSM 263 (274)
Q Consensus 196 ~~-~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~------~~----~~~wvy~v~p~~Ga~~a~~l~~~l~~~~ 263 (274)
.. |+.||+.+.++++..+++||+++||||||||+++++ +| +|+|+||++|++|+++|+++|++++.++
T Consensus 167 ~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~~~~ 245 (258)
T 3c02_A 167 LKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPL 245 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHHHhccc
Confidence 77 999999999999999999999999999999999862 34 6799999999999999999999998753
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.64 E-value=1.1e-15 Score=134.23 Aligned_cols=100 Identities=28% Similarity=0.444 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHH-----hcC
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFC-----SGH 118 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l-----~g~ 118 (274)
.+.++.++.|+++||+|++++++....++ .+....++.+|+.+...++..+++||+|+|||+|+++.+ -++
T Consensus 141 ~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~----~~~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~ 216 (246)
T 2f2b_A 141 ISYWQAMLAEVVGTFLLMITIMGIAVDER----APKGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGT 216 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTSTT----SCTTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHHHHheeeEEecCCC----CCCceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCC
Confidence 56789999999999999999887654321 123457899999999999999999999999999999988 345
Q ss_pred CCccchhhhHhHHhHHHHHHHHHHHHhcC
Q psy8647 119 ISLLKGFFYIIMQCVGAVAGSAVLEAVTP 147 (274)
Q Consensus 119 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 147 (274)
..|.+.|+||++|++|+++|+.+++.+.+
T Consensus 217 ~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 217 DLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp CCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 67889999999999999999999988765
No 15
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.43 E-value=1.1e-12 Score=116.31 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCCccc
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLK 123 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~~~~ 123 (274)
.+..+.++.|+++||+|+++..+....++ .......++.+|+.+.......++.||+.+|||+++++.+... +|..
T Consensus 125 ~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~---~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~ 200 (263)
T 2b6o_A 125 VSVGQATIVEIFLTLQFVLCIFATYDERR---NGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR-NFTN 200 (263)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCTTS---CSSCCCHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT-CCTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccC---CCCcccHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC-Cccc
Confidence 45688999999999999999887643221 1123357889999999999999999999999999999999877 8999
Q ss_pred hhhhHhHHhHHHHHHHHHHHHhcCCCC
Q psy8647 124 GFFYIIMQCVGAVAGSAVLEAVTPNPC 150 (274)
Q Consensus 124 ~~~yi~aQ~lGa~~g~~~~~~~~~~~~ 150 (274)
.|+||++|++|+++|+.+++.+..++.
T Consensus 201 ~Wvy~vgP~~Ga~la~~~y~~l~~~~~ 227 (263)
T 2b6o_A 201 HWVYWVGPVIGAGLGSLLYDFLLFPRL 227 (263)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999998876543
No 16
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.40 E-value=9e-13 Score=114.88 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhc-CCCc
Q psy8647 43 DKNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSG-HISL 121 (274)
Q Consensus 43 ~~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g-~~~~ 121 (274)
..+.++.++.|+++||+|+++.++....+ .+....++.+|+.+.......++.||+.+|||+++++.+.. ..+|
T Consensus 131 ~~~~~~~~~~E~i~T~~Lv~~i~~~~d~~-----~~~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~ 205 (234)
T 2o9g_A 131 GYSMLSALVVELVLSAGFLLVIHGATDKF-----APAGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWAL 205 (234)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTSTT-----SCTTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhcCCC-----CccchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCC
Confidence 35678999999999999999888765311 12335789999999999999999999999999999998874 4467
Q ss_pred cchhhhHhHHhHHHHHHHHHHHHhcCCC
Q psy8647 122 LKGFFYIIMQCVGAVAGSAVLEAVTPNP 149 (274)
Q Consensus 122 ~~~~~yi~aQ~lGa~~g~~~~~~~~~~~ 149 (274)
.+.|+||++|++|+++|+.+++.+..++
T Consensus 206 ~~~Wv~~vgP~~Ga~la~~~y~~~~~~~ 233 (234)
T 2o9g_A 206 EQLWFFWVVPIVGGIIGGLIYRTLLEKR 233 (234)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ceeeeeehHHhHHHHHHHHHHHHHcCCC
Confidence 7999999999999999999999887654
No 17
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.38 E-value=2.2e-12 Score=114.42 Aligned_cols=103 Identities=22% Similarity=0.196 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCCccc
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLK 123 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~~~~ 123 (274)
.+..+.++.|+++||+|+++..+....++ .......++.+|+.+.+.....++.||+.+|||+++++.+..+ +|.+
T Consensus 127 ~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~---~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~ 202 (266)
T 3d9s_A 127 TTQGQAMVVELILTFQLALCIFASTDSRR---TSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN-RFSP 202 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHCTTC---CSCCCCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT-CCCT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccC---CCccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC-Cccc
Confidence 46789999999999999999887753221 1122347889999999988999999999999999999999776 8888
Q ss_pred -hhhhHhHHhHHHHHHHHHHHHhcCCCC
Q psy8647 124 -GFFYIIMQCVGAVAGSAVLEAVTPNPC 150 (274)
Q Consensus 124 -~~~yi~aQ~lGa~~g~~~~~~~~~~~~ 150 (274)
.|+||++|++|+++|+++++.+..++.
T Consensus 203 ~~Wvy~vgP~~Ga~la~~~y~~l~~~~~ 230 (266)
T 3d9s_A 203 AHWVFWVGPIVGAVLAAILYFYLLFPNS 230 (266)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CEeeeehHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999998876543
No 18
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.37 E-value=2.4e-12 Score=111.34 Aligned_cols=100 Identities=28% Similarity=0.246 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCCccc
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLK 123 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~~~~ 123 (274)
.+..+.++.|+++||+|++........++ .......++.+|+.+.+.....++.||+.+|||+++++.+... +|.+
T Consensus 123 ~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~---~~~~~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~-~w~~ 198 (223)
T 3gd8_A 123 LTAGHGLLVELIITFQLVFTIFASCDSKR---TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWEN 198 (223)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCTTC---SCCCSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT-CCTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcccc---CCccCCccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc-CCCc
Confidence 46688999999999999998887654321 1112246788999887777777789999999999999999876 7999
Q ss_pred hhhhHhHHhHHHHHHHHHHHHhcC
Q psy8647 124 GFFYIIMQCVGAVAGSAVLEAVTP 147 (274)
Q Consensus 124 ~~~yi~aQ~lGa~~g~~~~~~~~~ 147 (274)
.|+||+++++|+++|+.+++.++.
T Consensus 199 ~Wvy~vgP~~Ga~la~~~y~~~~~ 222 (223)
T 3gd8_A 199 HWIYWVGPIIGAVLAGGLYEYVFC 222 (223)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeehhHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999987764
No 19
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.37 E-value=1.1e-12 Score=115.42 Aligned_cols=100 Identities=22% Similarity=0.264 Sum_probs=84.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHh-cCCCc
Q psy8647 43 DKNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCS-GHISL 121 (274)
Q Consensus 43 ~~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~-g~~~~ 121 (274)
..+..+.++.|+++||+|+++..+....+ .+....++.+|+.+.......++.||+.+|||+++++.+. |...|
T Consensus 154 ~~s~~~~f~~E~i~Tf~Lv~~il~~~d~~-----~~~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~~~~ 228 (256)
T 3llq_A 154 GYSLVSALLIEIILTAFFLIVILGSTHGR-----VPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWAL 228 (256)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHSTT-----SCTTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCCCcc
Confidence 35678999999999999999887665322 1223578999999999999999999999999999999986 44457
Q ss_pred cchhhhHhHHhHHHHHHHHHHHHhcC
Q psy8647 122 LKGFFYIIMQCVGAVAGSAVLEAVTP 147 (274)
Q Consensus 122 ~~~~~yi~aQ~lGa~~g~~~~~~~~~ 147 (274)
...|+||++|++|+++|+.+++.+.+
T Consensus 229 ~~~WVy~vgPi~Ga~la~~~y~~l~~ 254 (256)
T 3llq_A 229 QQLWLFWLAPIVGGAAGAVIWKLFGE 254 (256)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cceeeeeeHHHHHHHHHHHHHHHhcc
Confidence 78999999999999999999988763
No 20
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.36 E-value=2.4e-12 Score=114.85 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCCccc
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLK 123 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~~~~ 123 (274)
.+..+.++.|+++||+|+++.++....+ +.+....++.+|+.+.......++.||+.+|||+++++.+....-+..
T Consensus 166 ~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~----~~~~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~ 241 (279)
T 2w2e_A 166 ASRTRGLFLEAFGTAILCLTVLMLAVEK----HRATWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNY 241 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTSC----STTGGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCC----CCCcCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhh
Confidence 4567899999999999999988765422 123346789999999999999999999999999999999987644567
Q ss_pred hhhhHhHHhHHHHHHHHHHHHhcCCC
Q psy8647 124 GFFYIIMQCVGAVAGSAVLEAVTPNP 149 (274)
Q Consensus 124 ~~~yi~aQ~lGa~~g~~~~~~~~~~~ 149 (274)
.|+||++|++|+++|+++++.+...+
T Consensus 242 ~WVy~vgPiiGa~la~~ly~~l~~~~ 267 (279)
T 2w2e_A 242 HWIYWLGPILGAFLAYSIWQMWKWLN 267 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999887554
No 21
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.35 E-value=3.9e-12 Score=115.64 Aligned_cols=102 Identities=27% Similarity=0.233 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCCccc
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLK 123 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~~~~ 123 (274)
.+..+.++.|+++||+|+++.++....++ .......++.+|+.+.+.....++.||+.+|||+++++.+... .|.+
T Consensus 171 ~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~---~~~~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~-~w~~ 246 (340)
T 3iyz_A 171 LTAGHGLLVELIITFQLVFTIFASCDDKR---TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWEN 246 (340)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCcc---CCcccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc-CCCc
Confidence 46788999999999999999887654321 1112246788999988777777799999999999999999865 7999
Q ss_pred hhhhHhHHhHHHHHHHHHHHHhcCCC
Q psy8647 124 GFFYIIMQCVGAVAGSAVLEAVTPNP 149 (274)
Q Consensus 124 ~~~yi~aQ~lGa~~g~~~~~~~~~~~ 149 (274)
.|+||+++++|+++|+++++.++.++
T Consensus 247 ~WVywvgPiiGailaallY~~l~~p~ 272 (340)
T 3iyz_A 247 HWIYWVGPIIGAVLAGALYEYVFCPD 272 (340)
T ss_pred EeehhHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999887653
No 22
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.35 E-value=4.5e-12 Score=114.01 Aligned_cols=101 Identities=28% Similarity=0.238 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCCccc
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLK 123 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~~~~ 123 (274)
.+.++.++.|+++||+|+++.++....++ .......++.+|+.+.+.....++.||+.+|||+++++.+... .|..
T Consensus 132 ~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~---~~~~~~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~-~w~~ 207 (301)
T 2zz9_A 132 LTAGHGLLVELIITFQLVFTIFASCDDKR---TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWEN 207 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCSSS---SCCSSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCCCC---CCccchHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC-CCcc
Confidence 56789999999999999999887654221 1112357889999998777777789999999999999999875 8999
Q ss_pred hhhhHhHHhHHHHHHHHHHHHhcCC
Q psy8647 124 GFFYIIMQCVGAVAGSAVLEAVTPN 148 (274)
Q Consensus 124 ~~~yi~aQ~lGa~~g~~~~~~~~~~ 148 (274)
.|+||++|++|+++|+++++.++.+
T Consensus 208 ~WVy~vgPiiGailaa~ly~~l~~~ 232 (301)
T 2zz9_A 208 HWIYWVGPIIGAVLAGALYEYVFCP 232 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred eeeeeeHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988754
No 23
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.33 E-value=1.4e-12 Score=117.51 Aligned_cols=106 Identities=25% Similarity=0.255 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-CCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHh--cCCC
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPNDPN-TVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCS--GHIS 120 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~--g~~~ 120 (274)
.+.++.++.|+++||+|+++.+..+..++... .......++.+|+.++....+.++.||+.+|||+++++.+. +...
T Consensus 182 ~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~ 261 (304)
T 3cn5_A 182 YNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 261 (304)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCC
Confidence 45689999999999999999886543221111 00122578999999999999999999999999999999997 2347
Q ss_pred ccchhhhHhHHhHHHHHHHHHHHHhcCCC
Q psy8647 121 LLKGFFYIIMQCVGAVAGSAVLEAVTPNP 149 (274)
Q Consensus 121 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~ 149 (274)
|.+.|+||++|++|+++|+++++.+..++
T Consensus 262 w~~~WvywvgPiiGa~laa~~y~~l~~~~ 290 (304)
T 3cn5_A 262 WDDQWIFWVGPFIGAAVAAAYHQYVLRAA 290 (304)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred cCceEEEeehHHHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999887654
No 24
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.31 E-value=5.1e-12 Score=112.33 Aligned_cols=100 Identities=21% Similarity=0.235 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhcCCCccchh
Q psy8647 46 IWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGF 125 (274)
Q Consensus 46 ~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g~~~~~~~~ 125 (274)
..+.++.|+++||+|+++.++....++ .......++.+|+.+.+.....++.||+.+|||+++++.+... +|...|
T Consensus 137 ~~~~~~~E~i~T~~Lv~~i~~~~d~~~---~~~~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~-~~~~~w 212 (271)
T 1j4n_A 137 SGQGLGIEIIGTLQLVLCVLATTDRRR---RDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH-NFQDHW 212 (271)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHHTCSSC---CCCCSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT-CCTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccC---CCccccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC-CCccee
Confidence 367789999999999998887653221 1122357889999998777777789999999999999998876 789999
Q ss_pred hhHhHHhHHHHHHHHHHHHhcCCC
Q psy8647 126 FYIIMQCVGAVAGSAVLEAVTPNP 149 (274)
Q Consensus 126 ~yi~aQ~lGa~~g~~~~~~~~~~~ 149 (274)
+||++|++|+++|+++++.+..++
T Consensus 213 v~~vgP~~Ga~la~~~y~~~~~~~ 236 (271)
T 1j4n_A 213 IFWVGPFIGAALAVLIYDFILAPR 236 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999887654
No 25
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.28 E-value=8.8e-12 Score=111.42 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHhhcccCCcccchHHHHHHHHhc------
Q psy8647 44 KNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSG------ 117 (274)
Q Consensus 44 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPAvTl~~~l~g------ 117 (274)
.+.++.++.|+++||+|+++.++....++ ........++.+|+.+.......++.||+.+|||+++++.+..
T Consensus 143 ~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~--~~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g 220 (281)
T 1ldf_A 143 INFVQAFAVEMVITAILMGLILALTDDGN--GVPRGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWG 220 (281)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHCTTS--SSCCGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCC--CCcccchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccc
Confidence 36789999999999999999887754221 1112346889999999999999999999999999999988863
Q ss_pred CCCcc------chhhhHhHHhHHHHHHHHHHHHhcCCC
Q psy8647 118 HISLL------KGFFYIIMQCVGAVAGSAVLEAVTPNP 149 (274)
Q Consensus 118 ~~~~~------~~~~yi~aQ~lGa~~g~~~~~~~~~~~ 149 (274)
...|. ..|+||++|++|+++|+++++.+..++
T Consensus 221 ~~~~~~~~~~~~~WVy~vgPi~Ga~la~~~y~~l~~~~ 258 (281)
T 1ldf_A 221 NVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRH 258 (281)
T ss_dssp THHHHTTCSSCTTHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred cccccccCCCceeeHHhHHHHHHHHHHHHHHHHHhCcc
Confidence 12222 699999999999999999999887643
No 26
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.26 E-value=2.5e-12 Score=113.68 Aligned_cols=101 Identities=25% Similarity=0.316 Sum_probs=82.7
Q ss_pred ChhHHHHHHHHHHHHHHHHhhheec--CCCCCCCC--chhHHHHHHHHHHHHhhccCcCCcccchhhHHHHHhhc-CCCc
Q psy8647 163 NATQGLIIEAIITFVLVLTVEAVCD--DRRTDIKG--SVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGN-HWDN 237 (274)
Q Consensus 163 ~~~~~~~~E~~~T~~Lv~~vl~~~~--~~~~~~~~--~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~~~~~~~~~-~~~~ 237 (274)
+..+.++.|+++|++|++..++... .+.....+ ...+..|+.+.+.+++.+++||+++|||.+++..+.++ +|..
T Consensus 8 ~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~ 87 (258)
T 3c02_A 8 SYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKK 87 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCCcHHH
Confidence 5678899999999999997655321 11111122 25677899999999999999999999999999999976 8999
Q ss_pred eeehhhhhhHHHHHHHHHHHHHhccC
Q psy8647 238 IWVYWAGPILGGVLAGAGCLCLCHSM 263 (274)
Q Consensus 238 ~wvy~v~p~~Ga~~a~~l~~~l~~~~ 263 (274)
...|+++|++|+++|+.+.+.+++++
T Consensus 88 ~~~Yi~AQ~lGa~~ga~l~~~~~~~~ 113 (258)
T 3c02_A 88 IPVYFFAQLLGAFVGTSTVYGLYHGF 113 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 99999999999999999998888653
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=91.74 E-value=4.8 Score=35.29 Aligned_cols=102 Identities=9% Similarity=-0.022 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHhhccc-CCcccchHHHHHHHHhcCCCccchhhhH----hHHhHHHHHHHHHHHHhcC---CCC-
Q psy8647 80 TKIALTFGFVIATIAQAIGHV-SGCHINPAVTIGLFCSGHISLLKGFFYI----IMQCVGAVAGSAVLEAVTP---NPC- 150 (274)
Q Consensus 80 ~~~~l~~g~~~~~~i~~~~~i-SGah~NPAvTl~~~l~g~~~~~~~~~yi----~aQ~lGa~~g~~~~~~~~~---~~~- 150 (274)
...++.+++++.+.+..-+.. +| |--.+ ...+.+|.+|.+.+--| ++-++|+++-+.+...... ++.
T Consensus 69 ll~g~~F~vGL~lVvl~G~ELFTg---n~l~~-~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T 3kcu_A 69 LVGGICFSLGLILCVVCGADLFTS---TVLIV-VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_dssp HHHHHHHTHHHHHHHHHTCCCTTT---THHHH-HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTH
T ss_pred HHHHHHHHHHHHHHHHhCcccccc---chHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchH
Confidence 455666666677766655553 33 42223 34567888887655444 4556666555555432211 010
Q ss_pred -C----CcccccCCCCCChhHHHHHHHHHHHHHHHHhhheec
Q psy8647 151 -C----KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCD 187 (274)
Q Consensus 151 -~----~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~ 187 (274)
. +.. .-..+.+..+.|+-=.++-++.++.+.....
T Consensus 145 ~~~~~~~ia--~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ 184 (285)
T 3kcu_A 145 WGLNVLQTA--DHKVHHTFIEAVCLGILANLMVCLAVWMSYS 184 (285)
T ss_dssp HHHHHHHHH--HHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 011 1112456788888888899998888876533
No 28
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=76.76 E-value=1.6 Score=38.12 Aligned_cols=172 Identities=15% Similarity=0.165 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHHHHHhhcccCCccc---chHHHHHHHHhcCCCccchhhhH----hHHhHHHHHHHHHHHHhcCCCCC
Q psy8647 79 VTKIALTFGFVIATIAQAIGHVSGCHI---NPAVTIGLFCSGHISLLKGFFYI----IMQCVGAVAGSAVLEAVTPNPCC 151 (274)
Q Consensus 79 ~~~~~l~~g~~~~~~i~~~~~iSGah~---NPAvTl~~~l~g~~~~~~~~~yi----~aQ~lGa~~g~~~~~~~~~~~~~ 151 (274)
....++.+++++.+.+.. |+.+ |-.......+.++.+|.+.+--| ++-++|+++-+.+.+..-..+..
T Consensus 64 ~ll~g~~F~~Gl~lVvl~-----g~eLfTgn~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~~~~ 138 (268)
T 3tds_E 64 KIVMGLSFAIALSLVIMT-----GTELFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKG 138 (268)
T ss_dssp HHHHHHTCTHHHHHHHHH-----TCCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHh-----CccccccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCc
Confidence 345555666666665543 3343 43333346678898988765554 45555555555444321111000
Q ss_pred Ccc-----cccCCCCCChhHHHHHHHHHHHHHHHHhhheecCCCCCCCCchhHHHHHHHHHHHHhhccCcCCcccc----
Q psy8647 152 KLG-----MTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTGASMNP---- 222 (274)
Q Consensus 152 ~~~-----~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNP---- 222 (274)
... ...-..+.+..+.|+-=.++-++.++.+......+.. .-..+.+-+.+.+.+..+ +.=...|=
T Consensus 139 ~~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~~k~~---~gKi~~i~~pi~~Fv~~G--fEH~VANm~~~~ 213 (268)
T 3tds_E 139 PVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSD---TAKIIMIFLCLFAIITSG--FEHSVANMTIYS 213 (268)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHSCSCH---HHHHHHHHHHHHHHHHHT--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCch---hhHHHHHHHHHHHHHHcc--chHHHHHHHHHH
Confidence 000 0000113467788888888888888887755332221 112233333333222211 11111221
Q ss_pred ---------hhhHHHHHhhcCCCceeehhhhhhHHH-HHHHHHHHHHhccCCC
Q psy8647 223 ---------ARTLGPAVIGNHWDNIWVYWAGPILGG-VLAGAGCLCLCHSMPS 265 (274)
Q Consensus 223 ---------Ar~~~~~~~~~~~~~~wvy~v~p~~Ga-~~a~~l~~~l~~~~~~ 265 (274)
..+++..+ .+...-.+|.++|+ ++-++.|+++++++.+
T Consensus 214 ~~~~~~~~~~~t~~~~~-----~nlipvtlGNiiGG~~fvgl~y~~~~~~~~~ 261 (268)
T 3tds_E 214 VSLFSPTISTVTIGGAI-----YNLVAVTLGNIVGGALFMGLGTYILGKEKLN 261 (268)
T ss_dssp HHHHSSSCCSCCHHHHH-----HHHHHHHHHHHHHHHTTHHHHHHHHHCCC--
T ss_pred HHHHhCCCCCCcHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 12222111 12334567888888 4567888888875443
No 29
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=61.40 E-value=20 Score=30.88 Aligned_cols=172 Identities=15% Similarity=0.117 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHHHhhcccCCccc---chHHHHHHHHhcCCCccchhhhH----hHHhHHHHHHHHHHHHhcCCCCC-
Q psy8647 80 TKIALTFGFVIATIAQAIGHVSGCHI---NPAVTIGLFCSGHISLLKGFFYI----IMQCVGAVAGSAVLEAVTPNPCC- 151 (274)
Q Consensus 80 ~~~~l~~g~~~~~~i~~~~~iSGah~---NPAvTl~~~l~g~~~~~~~~~yi----~aQ~lGa~~g~~~~~~~~~~~~~- 151 (274)
...++.+++++.+.+.. |+.+ |-.......+.+|.+|.+.+--| ++-++|+++-+.+.... +....
T Consensus 59 ll~g~~F~vGl~lVvl~-----g~eLfTgn~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~-g~~~~~ 132 (261)
T 4fc4_A 59 LVMGATFGIALTLVIIA-----GSELFTGHTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWG-GGSLLP 132 (261)
T ss_dssp HHHHHHTTHHHHHHHHT-----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCTTSS
T ss_pred HHHHHHHHHHHHHHHHc-----CCcccccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccCc
Confidence 44555555555555543 3444 43433345667888887765555 55666666555554431 11100
Q ss_pred Ccc-----cccCCCCCChhHHHHHHHHHHHHHHHHhhheecCCCCCCCCchhHHHHHHHHHHHHhhccCcCCcccchhhH
Q psy8647 152 KLG-----MTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTGASMNPARTL 226 (274)
Q Consensus 152 ~~~-----~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~~ 226 (274)
... ...-..+.+..+.|+-=.++-++.++.+......+. .-..+.+-+.+.+-+..+ +.=...|=. -+
T Consensus 133 ~~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~~~~----~gKi~~i~~pi~~Fv~~G--fEH~VANm~-~~ 205 (261)
T 4fc4_A 133 VDTSIVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMAIRTEG----TAKFLAIWWCLLAFIASG--YEHSVANMT-LF 205 (261)
T ss_dssp CTTSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCH----HHHHHHHHHHHHHHHHHT--CCCHHHHHH-HH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhccc----hhhhhHHHHHHHHHHHcc--chHHHHhHH-HH
Confidence 000 000001234567777777888888777765533211 112233333333222211 111222211 11
Q ss_pred HHHHhhc-----CC----CceeehhhhhhHHH-HHHHHHHHHHhccCC
Q psy8647 227 GPAVIGN-----HW----DNIWVYWAGPILGG-VLAGAGCLCLCHSMP 264 (274)
Q Consensus 227 ~~~~~~~-----~~----~~~wvy~v~p~~Ga-~~a~~l~~~l~~~~~ 264 (274)
...+..+ +| .+...-.+|.++|+ ++.++.|++.++++.
T Consensus 206 ~~~~~~g~~~~~t~~~~~~nlipvtlGNiiGG~~fvgl~y~~~~~~~~ 253 (261)
T 4fc4_A 206 ALSWFGHHSDAYTLAGIGHNLLWVTLGNTLSGVVFMGLGYWYATPKSE 253 (261)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHC----
T ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 1111111 11 13334567888887 456778888876443
No 30
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=41.88 E-value=1.7e+02 Score=25.21 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHhhccc-CCcccchHHHHHHHHhcCCCccchhhhHh----HHhHHHHHHHHHHHHhcC---CCC-
Q psy8647 80 TKIALTFGFVIATIAQAIGHV-SGCHINPAVTIGLFCSGHISLLKGFFYII----MQCVGAVAGSAVLEAVTP---NPC- 150 (274)
Q Consensus 80 ~~~~l~~g~~~~~~i~~~~~i-SGah~NPAvTl~~~l~g~~~~~~~~~yi~----aQ~lGa~~g~~~~~~~~~---~~~- 150 (274)
...++.+++++.+.+..-+.. +|--+ .+ ...+.+|.+|.+.+--|. +-++|+++-+.+...... ++.
T Consensus 68 ll~g~~F~vGL~lVvl~g~ELFTgn~l---~~-~~~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~ 143 (280)
T 3kly_A 68 LLGGLAFSLGLILVVITGGELFTSSVL---IL-VAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQ 143 (280)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTTTCC---CC-SSSSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTH
T ss_pred HHHHHHHHHHHHHHHHccccccccchH---HH-HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCchH
Confidence 456667777777776665553 44333 22 235578888887665554 455555554444332111 110
Q ss_pred -C--CcccccCCCCCChhHHHHHHHHHHHHHHHHhhheec
Q psy8647 151 -C--KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCD 187 (274)
Q Consensus 151 -~--~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~~~~ 187 (274)
. -.....-..+.+..+.|+-=.++-++.++.+.....
T Consensus 144 ~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ 183 (280)
T 3kly_A 144 LGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFS 183 (280)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 000001122456788888888899988888876543
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=40.38 E-value=6 Score=35.26 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=16.1
Q ss_pred CCcccchHHHHHHHHhcC
Q psy8647 101 SGCHINPAVTIGLFCSGH 118 (274)
Q Consensus 101 SGah~NPAvTl~~~l~g~ 118 (274)
||||++||++++-.+..+
T Consensus 12 TgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 12 TGGHVFPALACAREFQAR 29 (365)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 789999999999999764
Done!