RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8647
(274 letters)
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein. MIP (Major Intrinsic
Protein) family proteins exhibit essentially two
distinct types of channel properties: (1) specific water
transport by the aquaporins, and (2) small neutral
solutes transport, such as glycerol by the glycerol
facilitators.
Length = 218
Score = 214 bits (546), Expect = 1e-69
Identities = 93/209 (44%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 47 WRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHIN 106
WRA+IAE + T + VF G GS + + +AL FG + T+ GH+SG H+N
Sbjct: 8 WRAVIAEFLATLLFVFFGVGSALGVK-KLYGGLLAVALAFGLALFTLVYCTGHISGAHLN 66
Query: 107 PAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPC-CKLGMTGLNPSINAT 165
PAVT L ISLL+ +YII Q +GA+ G+A+L+ VT L P +NA
Sbjct: 67 PAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNGLQRAGGFANSLAPGVNAG 126
Query: 166 QGLIIEAIITFVLVLTVEAVCDDRRTDIKGSV-PVAVGLAITCCHLAAIKFTGASMNPAR 224
Q ++E I+TF LV TV A DD R G V P+A+G A+ HLA +TGASMNPAR
Sbjct: 127 QAFVVEIILTFQLVYTVFATTDDPRNGSLGHVAPLAIGFAVFLNHLAGGPYTGASMNPAR 186
Query: 225 TLGPAVIGNHWDNIWVYWAGPILGGVLAG 253
+ GPAV+ WD+ WVYW GP++G LA
Sbjct: 187 SFGPAVVLWKWDDHWVYWVGPLIGAALAA 215
Score = 40.0 bits (94), Expect = 5e-04
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 45 NIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIA-LTFGFVIATIAQAIGHVSGC 103
N +A + E+I TF LV+ + +DP + +A L GF + A G +G
Sbjct: 124 NAGQAFVVEIILTFQLVYTVFATT---DDPRNGSLGHVAPLAIGFAVFLNHLAGGPYTGA 180
Query: 104 HINPAVTIG 112
+NPA + G
Sbjct: 181 SMNPARSFG 189
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of
the MIP superfamily function as membrane channels that
selectively transport water, small neutral molecules,
and ions out of and between cells. The channel proteins
share a common fold: the N-terminal cytosolic portion
followed by six transmembrane helices, which might have
arisen through gene duplication. On the basis of
sequence similarity and functional characteristics, the
superfamily can be subdivided into two major groups:
water-selective channels called aquaporins (AQPs) and
glycerol uptake facilitators (GlpFs). AQPs are found in
all three kingdoms of life, while GlpFs have been
characterized only within microorganisms.
Length = 228
Score = 196 bits (501), Expect = 9e-63
Identities = 85/223 (38%), Positives = 117/223 (52%), Gaps = 16/223 (7%)
Query: 48 RALIAELIGTFVLVFVGTGSIMWPNDPNTVDVT--KIALTFGFVIATIAQAIGHVSGCHI 105
R +AE +GTF+LVF G GS++ IAL +GF I + A+GH+SG HI
Sbjct: 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHI 60
Query: 106 NPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTP----------NPCCKLGM 155
NPAVT+ L G L++ YII Q +GA+ G+A+L + N +
Sbjct: 61 NPAVTLALAVGGRFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFG 120
Query: 156 TGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSV-PVAVGLAITCCHLAAIK 214
T +P ++ +E I TF+LVL V A DD G + P+A+GL + LA
Sbjct: 121 TYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPPGGLAPLAIGLLVAAIGLAGGP 180
Query: 215 FTGASMNPARTLGPAVIGN---HWDNIWVYWAGPILGGVLAGA 254
TGASMNPAR+LGPA+ HW WVYW GP++G +
Sbjct: 181 ITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGAL 223
Score = 47.6 bits (114), Expect = 1e-06
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 45 NIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIA-LTFGFVIATIAQAIGHVSGC 103
+ A E IGTF+LV V + +DPN +A L G ++A I A G ++G
Sbjct: 128 SNGNAFFVEFIGTFILVLVVFATT---DDPNGPPPGGLAPLAIGLLVAAIGLAGGPITGA 184
Query: 104 HINPAVTIG--LFCSGHISLLKGFFYIIMQCVGAVAGSAV 141
+NPA ++G LF + Y + +GA+AG+ V
Sbjct: 185 SMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALV 224
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins. 1.A.8 The Major
Intrinsic Protein (MIP) FamilyThe MIP family is large
and diverse, possessing over 100 members that all form
transmembrane channels. These channel proteins function
in water, smallcarbohydrate (e.g., glycerol), urea, NH3,
CO2 and possibly ion transport by an energy independent
mechanism. They are found ubiquitously in bacteria,
archaeaand eukaryotes. The MIP family contains two major
groups of channels: aquaporins and glycerol
facilitators.The known aquaporins cluster loosely
together as do the known glycerol facilitators. MIP
family proteins are believed to form aqueous pores that
selectively allow passive transport of their solute(s)
across the membrane with minimal apparent recognition.
Aquaporins selectively transport water (but not
glycerol) while glycerol facilitators selectively
transport glycerol but not water. Some aquaporins can
transport NH3 and CO2. Glycerol facilitators function as
solute nonspecific channels, and may transport glycerol,
dihydroxyacetone, propanediol, urea and other small
neutral molecules in physiologically importantprocesses.
Some members of the family, including the yeast FPS
protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport
both water and small solutes [Transport and binding
proteins, Unknown substrate].
Length = 216
Score = 175 bits (445), Expect = 2e-54
Identities = 78/213 (36%), Positives = 110/213 (51%), Gaps = 11/213 (5%)
Query: 52 AELIGTFVLVFVGTGSIM------WPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHI 105
AE +GTF+LVF G GS + +AL FG +AT+ +G +SG H+
Sbjct: 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHL 60
Query: 106 NPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCK--LGMTGLNPSIN 163
NPAVTI L L + YI+ Q +GA+ G+A+L +T + ++
Sbjct: 61 NPAVTIALLLGRRFPLKRVPVYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSASAGVS 120
Query: 164 ATQGLIIEAIITFVLVLTVEAVCDDRRT-DIKGSVPVAVGLAITCCHLAAIKFTGASMNP 222
+ Q +E I T +LVL + A DDR G P+A+GL + HL+ +TG MNP
Sbjct: 121 SGQAFFVEFIGTAILVLVIFATTDDRNRVPRGGFAPLAIGLLVFLIHLSMGPYTGTGMNP 180
Query: 223 ARTLGPAVIGNH--WDNIWVYWAGPILGGVLAG 253
AR+LGPA+ W N WVYW GPI+G +L
Sbjct: 181 ARSLGPALFAGLAGWGNHWVYWVGPIIGAILGA 213
Score = 37.7 bits (88), Expect = 0.003
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 45 NIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIA-LTFGFVIATIAQAIGHVSGC 103
+ +A E IGT +LV V + +D N V A L G ++ I ++G +G
Sbjct: 120 SSGQAFFVEFIGTAILVLVIFATT---DDRNRVPRGGFAPLAIGLLVFLIHLSMGPYTGT 176
Query: 104 HINPAVTIG 112
+NPA ++G
Sbjct: 177 GMNPARSLG 185
Score = 30.0 bits (68), Expect = 1.0
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 196 SVPVAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGN-HWDNIWVYWAGPILGGVLAGA 254
V +A GLA+ +GA +NPA T+ + + VY ++G +L A
Sbjct: 36 GVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVPVYIVAQLIGAILGAA 95
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases
(Major Intrinsic Protein Family) [Carbohydrate transport
and metabolism].
Length = 241
Score = 148 bits (376), Expect = 9e-44
Identities = 75/229 (32%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 48 RALIAELIGTFVLVFVGTGSIMWPNDPNTVDV----TKIALTFGFVIATIAQAIGHVSGC 103
+ L+AE +GTF+L+F G GS+ + + IAL +G + A G +SG
Sbjct: 6 KKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGA 65
Query: 104 HINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPC--------CKLGM 155
H+NPAVTI L G K YI+ Q +GA AG+A+L + LG
Sbjct: 66 HLNPAVTIALAVRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGA 125
Query: 156 TGLNPSINAT-QGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIK 214
+P + Q +IE + TFVLVL + A+ DD + G P+A+GL +T L+
Sbjct: 126 FSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNAN-AGFAPLAIGLLVTAIGLSLGP 184
Query: 215 FTGASMNPARTLGPAV---------IGNHWDNIWVYWAGPILGGVLAGA 254
TG ++NPAR LGP + W+ GPI+G +L
Sbjct: 185 TTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGAL 233
Score = 46.1 bits (110), Expect = 5e-06
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 45 NIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCH 104
++ +A + E +GTFVLV I+ D + L G ++ I ++G +G
Sbjct: 134 SLGQAFLIEFVGTFVLVLG----ILALTDDGNANAGFAPLAIGLLVTAIGLSLGPTTGTA 189
Query: 105 INPAVTIG----LFCSGHISLLKGFFY----IIMQCVGAVAGSAV 141
INPA +G +G + Y +I VGA+ G+ +
Sbjct: 190 INPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALL 234
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional.
Length = 250
Score = 137 bits (347), Expect = 2e-39
Identities = 82/216 (37%), Positives = 124/216 (57%), Gaps = 15/216 (6%)
Query: 48 RALIAELIGTFVLVFVGTGSIMWPN--------DPNTVDVTKIALTFG-FVIATIAQAIG 98
+A ++E I T + VF G GS + DP + +A F FV +IA
Sbjct: 19 KAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIA---A 75
Query: 99 HVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGL 158
++SG H+NPAVT+GL G+I+++ GFFY I QC+G++ +L VT + G+
Sbjct: 76 NISGGHLNPAVTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGE--SVPTHGV 133
Query: 159 NPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSV-PVAVGLAITCCHLAAIKFTG 217
+ A +G+++E ++TF LV TV A D + G++ P+A+G + LAA F+G
Sbjct: 134 AAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSG 193
Query: 218 ASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAG 253
SMNPAR+ GPAV+ + IW+YW GP++GG LAG
Sbjct: 194 GSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAG 229
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional.
Length = 252
Score = 137 bits (346), Expect = 3e-39
Identities = 83/220 (37%), Positives = 114/220 (51%), Gaps = 23/220 (10%)
Query: 48 RALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIG--------- 98
+A +AE I T + VF G GS M N T A G V A +A A
Sbjct: 21 KAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPA---GLVAAALAHAFALFVAVSVGA 77
Query: 99 HVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMT-- 156
++SG H+NPAVT G F G+I+LL+G Y I Q +G+V +L+ T G+
Sbjct: 78 NISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTG------GLETS 131
Query: 157 --GLNPSINATQGLIIEAIITFVLVLTVEAVC-DDRRTDIKGSVPVAVGLAITCCHLAAI 213
L+ + + E ++TF LV TV A D ++ D+ P+A+G + LA
Sbjct: 132 AFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGG 191
Query: 214 KFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAG 253
F GASMNPA + GPAV+ W N WVYWAGP++GG +AG
Sbjct: 192 AFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAG 231
Score = 34.0 bits (78), Expect = 0.055
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 45 NIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIA-LTFGFVIATIAQAIGHVSGC 103
+W A + E++ TF LV+ + + DP D+ IA + GF++ A G G
Sbjct: 140 GVWNAFVFEIVMTFGLVYTVYATAV---DPKKGDLGIIAPIAIGFIVGANILAGGAFDGA 196
Query: 104 HINPAVTIG 112
+NPAV+ G
Sbjct: 197 SMNPAVSFG 205
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional.
Length = 231
Score = 135 bits (343), Expect = 4e-39
Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 16/220 (7%)
Query: 48 RALIAELIGTFVLVFVGTGS-IMWPNDPNT-VDVTKIALTFGFVIATIAQAIGHVSGCHI 105
+ L AE GTF LVF G GS ++ P + +AL FG + T+A A+GH+SG H
Sbjct: 3 KKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHF 62
Query: 106 NPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAV-TPNPCCKLGMTGL------ 158
NPAV++GL+ G + YII Q VG +A +AVL + + L +G
Sbjct: 63 NPAVSVGLWAGGRFPAKELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYG 122
Query: 159 --NP-SINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKF 215
+P + L+ E ++T +L + D R G P+A+GLA+T HL +I
Sbjct: 123 EHSPGGYSLLAALVCEVVLTAFFLLVILGATDKRAP--AGFAPIAIGLALTLIHLISIPV 180
Query: 216 TGASMNPARTLGPAVIGNHW--DNIWVYWAGPILGGVLAG 253
T S+NPAR+ G A+ W + +W++W PI+G ++ G
Sbjct: 181 TNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGG 220
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional.
Length = 256
Score = 125 bits (314), Expect = 1e-34
Identities = 83/223 (37%), Positives = 111/223 (49%), Gaps = 22/223 (9%)
Query: 44 KNIWRALIAELIGTFVLVFVGTGSIM--------WPNDPNTVDVTKIALTFGFVIATIAQ 95
+N R+ +AE I TF VF GS M +DP+++ + IA F A
Sbjct: 19 RNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIA 78
Query: 96 AIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVT-----PNPC 150
A ++SG H+NPAVT G+ GHIS+ FY I Q + +V L+ T P
Sbjct: 79 A--NISGGHVNPAVTFGMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHVPTYK 136
Query: 151 CKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHL 210
MTG S+ +E ++TF LV TV A D RR + P+A+GL L
Sbjct: 137 IAEEMTGFGASV-------LEGVLTFGLVYTVYAAGDPRRGLLGAIGPLAIGLVAGANVL 189
Query: 211 AAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAG 253
AA F+G SMNPA G AV+ + N VYW GP+LGG +AG
Sbjct: 190 AAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAG 232
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional.
Length = 283
Score = 116 bits (293), Expect = 3e-31
Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 14/217 (6%)
Query: 46 IWRALIAELIGTFVLVFVGTGSIMWPN-DPNTVDVTKIALTFGFVIATIAQAIGHVSGCH 104
+ + LIAE+IGT+ ++F G G ++ T+ I +T+G ++ + + GH+SG H
Sbjct: 41 LTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAH 100
Query: 105 INPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLE---AVTPNPCCKLGMTGLNPS 161
NPAVT+ + YI Q G++ S L VTP G P+
Sbjct: 101 FNPAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPE-----AFFGTTPT 155
Query: 162 INATQGLIIEAIITFVLVLTVEAVCDDRRT--DIKGSVPVAVGLAITCCHLAAIKFTGAS 219
++ Q L+ E II+F+L+ + V D R ++ G +AVG+ I A +GAS
Sbjct: 156 DSSGQALVAEIIISFLLMFVISGVATDSRAVGELAG---IAVGMTIILNVFVAGPISGAS 212
Query: 220 MNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGAGC 256
MNPAR+LGPA++ + IWVY GP +G + G
Sbjct: 213 MNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVY 249
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional.
Length = 298
Score = 116 bits (292), Expect = 6e-31
Identities = 78/216 (36%), Positives = 108/216 (50%), Gaps = 10/216 (4%)
Query: 43 DKNIWRALIAELIGTFVLVFVGT-GSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVS 101
D ++ R L AE +GTF+L+F T G I+ + A G + + + GH+S
Sbjct: 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHIS 126
Query: 102 GCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGLNPS 161
G H+NP++TI H YI Q ++ S L+ V +P G+T PS
Sbjct: 127 GAHLNPSLTIAFAALRHFPWKHVPAYIAAQVSASICASFALKGVF-HPFMSGGVT--VPS 183
Query: 162 INATQGLIIEAIITFVLVLTVEAVCDDRRT--DIKGSVPVAVGLAITCCHLAAIKFTGAS 219
++ Q +E IITF L+ V AV D R ++ G +AVG + L A TG S
Sbjct: 184 VSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAG---IAVGATVMLNILVAGPSTGGS 240
Query: 220 MNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGAG 255
MNP RTLGPAV ++ IW+Y P LG LAGAG
Sbjct: 241 MNPVRTLGPAVAAGNYRAIWIYLVAPTLGA-LAGAG 275
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional.
Length = 296
Score = 113 bits (283), Expect = 1e-29
Identities = 75/214 (35%), Positives = 112/214 (52%), Gaps = 10/214 (4%)
Query: 48 RALIAELIGTFVLVFVGTGSIM--WPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHI 105
+ LIAE++GT+ LVF G S++ ND N V + IA+ +G I + ++GH+SG HI
Sbjct: 55 QKLIAEVLGTYFLVFTGCASVVVNMQND-NVVTLPGIAIVWGLTIMVLIYSLGHISGAHI 113
Query: 106 NPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLE---AVTPNPCCKLG--MTGLNP 160
NPAVTI G L + Y+I Q +G+ +A L + + C G +P
Sbjct: 114 NPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSP 173
Query: 161 SINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTGASM 220
+ Q ++E I+TF L+ + V D R I +A+G + L A + ASM
Sbjct: 174 VGSDLQAFVMEFIVTFYLMFIISGVATDNRA-IGELAGLAIGSTVLLNVLIAAPVSSASM 232
Query: 221 NPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGA 254
NP R+LGPA++ + IW+Y P LG + AGA
Sbjct: 233 NPGRSLGPAMVYGCYKGIWIYIVAPTLGAI-AGA 265
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional.
Length = 274
Score = 102 bits (256), Expect = 7e-26
Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 23/221 (10%)
Query: 43 DKNIWRALIAELIGTFVLVFVGTGSIMWPN-DPNTVDVTKIALTFGFVIATIAQAIGHVS 101
D N R ++AE++GTF+L+F G I V + + A T G + + +IG +S
Sbjct: 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSIS 100
Query: 102 GCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTGLNPS 161
G H+NP+VTI GH K YI Q VG+V + V +V G+
Sbjct: 101 GAHVNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVY----------GVKAD 150
Query: 162 INATQGLI-------IEAIITFVLV-LTVEAVCDDRRT-DIKGSVPVAVGLAITCCHLAA 212
+ T+ +E I TF+++ L + + G V +G+AI L
Sbjct: 151 LMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQSLGHLSGFV---IGIAIGLAVLIT 207
Query: 213 IKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAG 253
+G SMNPAR+LGPA++ + +IW+Y P +G V
Sbjct: 208 GPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGA 248
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional.
Length = 294
Score = 92.9 bits (231), Expect = 4e-22
Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 30/233 (12%)
Query: 47 WRALIAELIGTFVLVFVGTGSIMWPN-DPNTVDVTKIALTFGFVIATIAQAIGHVSGCHI 105
R +AE +GTFVL+F G G + + N D I + +G + +SG H+
Sbjct: 50 VREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHL 109
Query: 106 NPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAV------------TPNPCCKL 153
NPAVT+G G K Y + Q +GA G+A + + P
Sbjct: 110 NPAVTLGNAVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMAN 169
Query: 154 GMTGL---NPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHL 210
G G+ P + E I+T +L+L + A+ D +PVAVGL + +
Sbjct: 170 GFAGVFATYPREGNFYAIFSELILTAILLLVILAITDPNNCPAFNYLPVAVGLLVFVIGI 229
Query: 211 AAIKFTGASMNPARTLGPAVIG------------NHWDNIWVYWAGPILGGVL 251
+ TG ++NPAR LGP + N++ WV P +G VL
Sbjct: 230 SFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYY--FWVPLVAPFVGAVL 280
>gnl|CDD|214809 smart00762, Cog4, COG4 transport protein. This region is found in
yeast oligomeric golgi complex component 4 which is
involved in ER to Golgi and intra Golgi transport.
Length = 324
Score = 31.1 bits (71), Expect = 0.50
Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 46/148 (31%)
Query: 2 KMMKVKVLPCNQVVSLWAIPAENNLKDSIRMRGVIGIHDVRDKNIWRALIAELIGTFVLV 61
+ + K+ + K I + ++ RD I EL+GT+V
Sbjct: 197 RFISRKINEFTERSQ-----DPEEEKQEIELPKLL-----RDSKFSTK-IQELLGTYVP- 244
Query: 62 FVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIG---HVSGCHINPAVTIGLFCSGH 118
L + ++ +AI S +P +
Sbjct: 245 ----------------------LETYYFRRSVEKAIKLDELPSDEDKDPLTS-------- 274
Query: 119 ISLLKGFFYIIMQCVGAVAGSAVLEAVT 146
S++ FY++ + + + + ++T
Sbjct: 275 -SMVDDVFYLLRKVLRRALSTGNIASLT 301
>gnl|CDD|191350 pfam05711, TylF, Macrocin-O-methyltransferase (TylF). This family
consists of bacterial macrocin O-methyltransferase
(TylF) proteins. TylF is responsible for the methylation
of macrocin to produce tylosin. Tylosin is a macrolide
antibiotic used in veterinary medicine to treat
infections caused by Gram-positive bacteria and as an
animal growth promoter in the swine industry. It is
produced by several Streptomyces species. As with other
macrolides, the antibiotic activity of tylosin is due to
the inhibition of protein biosynthesis by a mechanism
that involves the binding of tylosin to the ribosome,
preventing the formation of the
mRNA-aminoacyl-tRNA-ribosome complex. The structure of
one representative sequence from this family, NovP,
shows it to be an S-adenosyl-l-methionine-dependent
O-methyltransferase that catalyzes the penultimate step
in the biosynthesis of the aminocoumarin antibiotic
novobiocin. Specifically, it methylates at 4-OH of the
noviose moiety, and the resultant methoxy group is
important for the potency of the mature antibiotic. It
is likely that the key structural features of NovP are
common to the rest of the family and include: a helical
'lid' region that gates access to the co-substrate
binding pocket and an active centre that contains a
3-Asp putative metal binding site. A further conserved
Asp probably acts as the general base that initiates the
reaction by de-protonating the 4-OH group of the noviose
unit.
Length = 249
Score = 30.4 bits (69), Expect = 0.75
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 29 SIRMRGVIGIHDVRDKNIWRA 49
I MRGV+ + VRD+ +W A
Sbjct: 90 CIFMRGVLAAYGVRDRTVWVA 110
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 29.3 bits (65), Expect = 2.9
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 152 KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLA 211
KL T LN +IN T +I I++F ++ V +D + K + A G + LA
Sbjct: 796 KLTYTYLNKNINQTAFMITNKIMSFTKHISNSLVANDSKGGNKATSASAFGDSGDANFLA 855
Query: 212 AIKFT 216
+T
Sbjct: 856 GGGYT 860
>gnl|CDD|220449 pfam09867, DUF2094, Uncharacterized protein conserved in bacteria
(DUF2094). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 138
Score = 27.6 bits (62), Expect = 3.7
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 218 ASMNPARTLGPAVIGNHWDN--IWVYWAGPILGGVLAGAGCLCLCHSMPS 265
+ +R + + +W + P LGG A AG L MPS
Sbjct: 31 EGLAASRDTLGEGWLAAYLSAPVWRFVLPPGLGGAAAVAGVL-----MPS 75
>gnl|CDD|236993 PRK11820, PRK11820, hypothetical protein; Provisional.
Length = 288
Score = 28.2 bits (64), Expect = 4.4
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 12 NQVVSLWAIPAENNLKDSIRMRGVIGIHDVRDKNIWRALIAEL 54
++ + E +L D +R GV+ + + +W AL+A L
Sbjct: 93 EELKAELPEAGEISLDDLLRWPGVLEAEEEDLEALWAALLAAL 135
>gnl|CDD|153223 cd03129, GAT1_Peptidase_E_like, Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E_like
proteins. Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E_like
proteins. This group contains proteins similar to the
aspartyl dipeptidases Salmonella typhimurium peptidase E
and Xenopus laevis peptidase E and, extracellular
cyanophycinases from Pseudomonas anguilliseptica BI
(CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria
peptidase E is believed to play a role in degrading
peptides generated by intracellular protein breakdown or
imported into the cell as nutrient sources. Peptidase E
uniquely hydrolyses only Asp-X dipeptides (where X is
any amino acid), and one tripeptide Asp-Gly-Gly.
Cyanophycinases are intracellular exopeptidases which
hydrolyze the polymer cyanophycin (multi
L-arginyl-poly-L-aspartic acid) to the dipeptide
beta-Asp-Arg. Peptidase E and cyanophycinases are
thought to have a Ser-His-Glu catalytic triad which
differs from the Cys-His-Glu catalytic triad typical of
GATase1 domains by having a Ser in place of the reactive
Cys at the nucleophile elbow. Xenopus peptidase E is
developmentally regulated in response to thyroid hormone
and, it is thought to play a role in apoptosis during
tail reabsorption.
Length = 210
Score = 27.3 bits (61), Expect = 8.5
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 240 VYWAGPILGGVLAGAGCLC-----LCHSMPSLQPR 269
G ++GG AGA + S P + P
Sbjct: 110 RVARGVVIGGTSAGAAVMGETGIGTTPSEPEVTPP 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.451
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,033,853
Number of extensions: 1384388
Number of successful extensions: 1835
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1752
Number of HSP's successfully gapped: 68
Length of query: 274
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 179
Effective length of database: 6,723,972
Effective search space: 1203590988
Effective search space used: 1203590988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.1 bits)