RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8647
(274 letters)
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 295 bits (756), Expect = e-100
Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 4/236 (1%)
Query: 23 ENNLKDSIRMRGVIGIHDVRDKNIWRALIAELIGTFVLVFVGTGSIMW---PNDPNTVDV 79
+++ KD ++ V + W+A+ AE + + V + GS + +P VD+
Sbjct: 28 DDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDM 87
Query: 80 TKIALTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGS 139
I+L FG IAT+ Q GH+SG HINPAVT+ + C+ IS+ K FYI QC+GA+ G+
Sbjct: 88 VLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGA 147
Query: 140 AVLEAVTP-NPCCKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVP 198
+L VTP + LG+T ++ ++ A GL++E IITF LV T+ A CDD+RTD+ GSV
Sbjct: 148 GILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA 207
Query: 199 VAVGLAITCCHLAAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGA 254
+A+G ++ HL AI +TGASMNPAR+ GPAVI +W+N W+YW GPI+G VLAGA
Sbjct: 208 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGA 263
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional
crystal, electron diffraction, electron microscopy,
membrane protein; HET: PEE; 2.80A {Rattus norvegicus}
PDB: 2d57_A
Length = 301
Score = 290 bits (743), Expect = 1e-98
Identities = 104/223 (46%), Positives = 146/223 (65%), Gaps = 4/223 (1%)
Query: 36 IGIHDVRDKNIWRALIAELIGTFVLVFVGTGSIMW---PNDPNTVDVTKIALTFGFVIAT 92
+ V + W+A+ AE + + V + GS + +P VD+ I+L FG IAT
Sbjct: 2 VAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIAT 61
Query: 93 IAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTP-NPCC 151
+ Q GH+SG HINPAVT+ + C+ IS+ K FYI QC+GA+ G+ +L VTP +
Sbjct: 62 MVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG 121
Query: 152 KLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLA 211
LG+T ++ ++ A GL++E IITF LV T+ A CDD+RTD+ GSV +A+G ++ HL
Sbjct: 122 GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLF 181
Query: 212 AIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGA 254
AI +TGASMNPAR+ GPAVI +W+N W+YW GPI+G VLAGA
Sbjct: 182 AINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGA 224
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 284 bits (729), Expect = 4e-97
Identities = 88/215 (40%), Positives = 129/215 (60%), Gaps = 2/215 (0%)
Query: 40 DVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGH 99
++R + WRA+ AE T VF G G+ + P + V ++AL FG +AT+ QA+GH
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFGLGASL-RWAPGPLHVLQVALAFGLALATLVQAVGH 61
Query: 100 VSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTP-NPCCKLGMTGL 158
+SG H+NPAVT +SLL+ Y++ Q +GAVAG+AVL +VTP L + L
Sbjct: 62 ISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTL 121
Query: 159 NPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTGA 218
+P ++ Q I+E +T VL + A D+RR GSV +AVG ++T HL + +TGA
Sbjct: 122 HPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGA 181
Query: 219 SMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAG 253
MNPAR+ PA++ ++ N WVYW GP++G L
Sbjct: 182 GMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGS 216
Score = 35.8 bits (83), Expect = 0.010
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 161 SINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAV--GLAITCCHLAAIKFTGA 218
S + + + E T V + VA+ GLA+ A +GA
Sbjct: 6 SASFWRAIFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGA 65
Query: 219 SMNPARTLGPAVIGN-HWDNIWVYWAGPILGGVLAGA 254
+NPA T V Y +LG V A
Sbjct: 66 HVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAA 102
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 281 bits (722), Expect = 8e-96
Identities = 93/224 (41%), Positives = 135/224 (60%), Gaps = 9/224 (4%)
Query: 40 DVRDKNIWRALIAELIGTFVLVFVGTGSIM--------WPNDPNTVDVTKIALTFGFVIA 91
+ + K WRA++AE + + +F+ GS + D K++L FG IA
Sbjct: 4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63
Query: 92 TIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTP-NPC 150
T+AQ++GH+SG H+NPAVT+GL S IS+L+ YII QCVGA+ +A+L +T P
Sbjct: 64 TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123
Query: 151 CKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHL 210
LG+ L P +N+ QGL IE I T LVL V A D RR D+ GS P+A+G ++ HL
Sbjct: 124 NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHL 183
Query: 211 AAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGA 254
AI +TG +NPAR+ G +VI +++ + W++W GP +G LA
Sbjct: 184 LAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVL 227
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein
structure initiative, center for structures of MEMB
proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo
sapiens}
Length = 223
Score = 278 bits (714), Expect = 2e-95
Identities = 100/215 (46%), Positives = 140/215 (65%), Gaps = 4/215 (1%)
Query: 44 KNIWRALIAELIGTFVLVFVGTGSIMW---PNDPNTVDVTKIALTFGFVIATIAQAIGHV 100
+ W+A+ AE + + V + GS + P VD+ I+L FG IAT+ Q GH+
Sbjct: 1 QAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHI 60
Query: 101 SGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCK-LGMTGLN 159
SG HINPAVT+ + C+ IS+ K FYI QC+GA+ G+ +L VTP LG+T ++
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVH 120
Query: 160 PSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTGAS 219
++ A GL++E IITF LV T+ A CD +RTD+ GS+ +A+G ++ HL AI +TGAS
Sbjct: 121 GNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAINYTGAS 180
Query: 220 MNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAGA 254
MNPAR+ GPAVI +W+N W+YW GPI+G VLAG
Sbjct: 181 MNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGG 215
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 277 bits (710), Expect = 5e-94
Identities = 95/221 (42%), Positives = 130/221 (58%), Gaps = 3/221 (1%)
Query: 36 IGIHDVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQ 95
+ +V +A+ AE + T + VF G GS + + +IAL FG I T+AQ
Sbjct: 1 MSKKEVCSVAFLKAVFAEFLATLIFVFFGLGSAL-KWPSALPTILQIALAFGLAIGTLAQ 59
Query: 96 AIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTP-NPCCKLG 154
A+G VSG HINPA+T+ L ISLL+ FFY+ Q VGA+AG+ +L V P N L
Sbjct: 60 ALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLA 119
Query: 155 MTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIK 214
+ LN + Q +++E I+TF L L + A D RRT GS +++GL++T HL I
Sbjct: 120 VNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPALSIGLSVTLGHLVGIY 179
Query: 215 FTGASMNPARTLGPAVIGNHW-DNIWVYWAGPILGGVLAGA 254
FTG SMNPAR+ GPAV+ N + WV+W GPI+G VLA
Sbjct: 180 FTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAI 220
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport
protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A
1z98_A 2b5f_A
Length = 304
Score = 275 bits (704), Expect = 1e-92
Identities = 79/232 (34%), Positives = 119/232 (51%), Gaps = 13/232 (5%)
Query: 36 IGIHDVRDKNIWRALIAELIGTFVLVFVGTGSIM----WPNDPNTVDVTKIALTFGFVIA 91
+ +++ + WRA IAE I T + +++ +++ +V + IA FG +I
Sbjct: 50 FDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIF 109
Query: 92 TIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNP-- 149
+ +SG HINPAVT GLF + + LL+ Y+I QC+GA+ G +++A P
Sbjct: 110 VLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYN 169
Query: 150 CCKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSV----PVAVGLAI 205
G + N L E I TFVLV TV + D +R+ V P+ +G A+
Sbjct: 170 QFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAV 229
Query: 206 TCCHLAAIKFTGASMNPARTLGPAVIGNH---WDNIWVYWAGPILGGVLAGA 254
HLA I TG +NPAR+ G AVI N WD+ W++W GP +G +A A
Sbjct: 230 FMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAA 281
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane
protein; HET: BOG; 1.15A {Komagataella pastoris} PDB:
2w1p_A*
Length = 279
Score = 266 bits (683), Expect = 8e-90
Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 12/227 (5%)
Query: 37 GIHDVRDKNIWRALIAELIGTFVLVFVGTGSIM--------WPNDPNTVDVTKIALTFGF 88
G +N + A+ E +GTF+ ++ N + I+ FGF
Sbjct: 35 GFGSDSVRNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGF 94
Query: 89 VIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPN 148
+ VSG ++NPAVT+ L + I +G Q V +A + A+TP
Sbjct: 95 GVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPG 154
Query: 149 PCCKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCC 208
L + T+GL +EA T +L LTV + ++ P +G+A+
Sbjct: 155 E--IAFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRA-TWFAPFVIGIALLIA 211
Query: 209 HLAAIKFTGASMNPARTLGPAVIGNHWDNI-WVYWAGPILGGVLAGA 254
HL I +TGA +NPAR+ GPAV + N W+YW GPILG LA +
Sbjct: 212 HLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYS 258
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P
protein structure initiative, center for structures of
MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli}
PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
3nka_A* 3nkc_A*
Length = 234
Score = 256 bits (657), Expect = 2e-86
Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 16/225 (7%)
Query: 44 KNIWRALIAELIGTFVLVFVGTGSIM--WPNDPNTVDVTKIALTFGFVIATIAQAIGHVS 101
+++R L AE GTF LVF G+GS + + +AL FG + T+A A+GH+S
Sbjct: 2 SHMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHIS 61
Query: 102 GCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPCCKLGMTG---- 157
G H NPAVTIGL+ G + Y+I Q VG + +A+L +
Sbjct: 62 GGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFAS 121
Query: 158 ------LNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLA 211
+ L++E +++ +L + D G P+A+GLA T HL
Sbjct: 122 NGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFA--PAGFAPIAIGLACTLIHLI 179
Query: 212 AIKFTGASMNPARTLGPAVIGNHW--DNIWVYWAGPILGGVLAGA 254
+I T S+NPAR+ A+ W + +W +W PI+GG++ G
Sbjct: 180 SIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGL 224
Score = 43.7 bits (104), Expect = 2e-05
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 37 GIHDVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQA 96
G H ++ AL+ EL+ + + V G+ D + G I
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHGAT----DKFAPAGF-APIAIGLACTLIHLI 179
Query: 97 IGHVSGCHINPAVTIG--LFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAV 145
V+ +NPA + +F G +L + +F+ ++ VG + G + +
Sbjct: 180 SIPVTNTSVNPARSTAVAIF-QGGWALEQLWFFWVVPIVGGIIGGLIYRTL 229
Score = 30.6 bits (70), Expect = 0.35
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 161 SINATQGLIIEAIITFVLVLTVE--AVCDDRRTDIKGSVP---VAVGLAITCCHLAAIKF 215
+ + + L E+ TF LV AV ++ +A GL + A
Sbjct: 1 ASHMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHI 60
Query: 216 TGASMNPARTLGPAVIGN-HWDNIWVYWAGPILGGVLAGA 254
+G NPA T+G G + Y ++GG++A A
Sbjct: 61 SGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAA 100
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel,
structu genomics, PSI-2, protein structure initiative;
2.01A {Agrobacterium tumefaciens str}
Length = 256
Score = 254 bits (652), Expect = 2e-85
Identities = 73/225 (32%), Positives = 108/225 (48%), Gaps = 14/225 (6%)
Query: 42 RDKNIWRALIAELIGTFVLVFVGTGSIMWPND--PNTVDVTKIALTFGFVIATIAQAIGH 99
+ + R L+AE GTF LVF G GS ++ + T +AL FG + T+A A+G
Sbjct: 25 QSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGG 84
Query: 100 VSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTP-NPCCKLGMTGL 158
+SG H NPAV++GL +G Y+I Q GA+ +A L + LG
Sbjct: 85 ISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFAS 144
Query: 159 N-------PSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLA 211
N + L+IE I+T ++ + R G P+A+GLA+T HL
Sbjct: 145 NGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVP--AGFAPIAIGLALTLIHLI 202
Query: 212 AIKFTGASMNPARTLGPAVIGNHW--DNIWVYWAGPILGGVLAGA 254
+I T S+NPAR+ G A+ W +W++W PI+GG
Sbjct: 203 SIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAV 247
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel,
structural GENO PSI-2, protein structure initiative;
1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A
3ne2_A*
Length = 246
Score = 223 bits (571), Expect = 3e-73
Identities = 79/237 (33%), Positives = 110/237 (46%), Gaps = 28/237 (11%)
Query: 45 NIWRALIAELIGTFVLVFVGTGSIM------------------WPNDPNTVDVTKIALTF 86
++ + IAE IGTF+LVF G GS D I L F
Sbjct: 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAF 62
Query: 87 GFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVT 146
GF IA A+G++SGCHINPAVTIGL+ + YII Q +GA GS +
Sbjct: 63 GFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCA 122
Query: 147 ---PNPCCKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGL 203
LG T P I+ Q ++ E + TF+L++T+ + D R KG + +GL
Sbjct: 123 GIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERA-PKGFAGIIIGL 181
Query: 204 AITCCHLAAIKFTGASMNPARTLGPAVI------GNHWDNIWVYWAGPILGGVLAGA 254
+ +G+S+NPART GP + + W+ +Y GPI+G VLA
Sbjct: 182 TVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAAL 238
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport,
structural GEN PSI-2, protein structure initiative; HET:
BOG; 2.05A {Plasmodium falciparum}
Length = 258
Score = 176 bits (449), Expect = 1e-54
Identities = 63/236 (26%), Positives = 96/236 (40%), Gaps = 19/236 (8%)
Query: 38 IHDVRDKNIWRALIAELIGTFVLVFVGTGSI-MWPNDPNTVDVTKIALTFGFVIATIAQA 96
+H + K+ R I E +GTFVL+F+G G+ + + D K+ L +G +
Sbjct: 1 MHMLFYKSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILV 60
Query: 97 IGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAV------TPNPC 150
+SG H+N AV+IGL L K Y Q +GA G++ + +
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIP 120
Query: 151 CKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDI--KGSVPVAVGLAITCC 208
T NPSI+ T E I+T +L+L + V D+ + VGL I C
Sbjct: 121 QFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGKFHILKLSSVVGLIILCI 180
Query: 209 HLAAIKFTGASMNPARTLGPA----------VIGNHWDNIWVYWAGPILGGVLAGA 254
+ TG ++NP+R LG WV P +G V+
Sbjct: 181 GITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQ 236
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane
channel protein, transport PROT; HET: BOG; 2.10A
{Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A*
1ldi_A*
Length = 281
Score = 162 bits (411), Expect = 8e-49
Identities = 64/247 (25%), Positives = 96/247 (38%), Gaps = 34/247 (13%)
Query: 42 RDKNIWRALIAELIGTFVLVFVGTGSIMWPNDP-NTVDVTKIALTFGFVIATIAQAIGHV 100
+ + IAE +GT +L+F G G + + +I++ FG +A V
Sbjct: 3 QTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGV 62
Query: 101 SGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVL-----------------E 143
SG H+NPAVTI L+ K +I+ Q GA +A++
Sbjct: 63 SGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIV 122
Query: 144 AVTPNPCCKLGM--TGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDI-KGSVPVA 200
+ G T NP IN Q +E +IT +L+ + A+ DD P+
Sbjct: 123 RGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLL 182
Query: 201 VGLAITCCHLAAIKFTGASMNPARTLGPAVI-------------GNHWDNIWVYWAGPIL 247
+GL I + TG +MNPAR GP V G V GPI+
Sbjct: 183 IGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIV 242
Query: 248 GGVLAGA 254
G ++
Sbjct: 243 GAIVGAF 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 40/237 (16%), Positives = 73/237 (30%), Gaps = 73/237 (30%)
Query: 16 SLWAIPAENNLKDSIRMRGVIG--IHD-----VRDKNIWRALIAELIGTFVLVFVGTGSI 68
S+ I N + +I G G I + + + + L E I F + + S
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI--FKEINEHSTSY 1717
Query: 69 MWPNDPNTVDVTKIA----LTFGFVIATIAQAIGHVSGCHINPAVTIGLFCSGHISLLKG 124
+ ++ + T+ ++ G + A F GH SL
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA----DAT----FA-GH-SL--- 1764
Query: 125 FFYIIMQCVG------AVA---------------GSAVLEAVTPNPCCK--LGMTGLNPS 161
G ++A G + AV + + GM +NP
Sbjct: 1765 ---------GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 162 -INATQGL-IIEAIITFVLVLT---VEAVCDDRRTDIKGSVPVAVGLAITCCHLAAI 213
+ A+ ++ ++ V T VE V +++ VA G L A+
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNY----NVENQQYVAAG------DLRAL 1862
Score = 29.6 bits (66), Expect = 1.4
Identities = 32/149 (21%), Positives = 45/149 (30%), Gaps = 51/149 (34%)
Query: 85 TFGFVIATIAQAIGHVSGCHINP-AVTIGLFCSGHISLLKGFF----YIIMQCVGAVAGS 139
T+GF I I NP +TI H KG Y M V G
Sbjct: 1656 TYGFSILDIVIN---------NPVNLTI------HFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 140 AVLEAVTPN---PCCKLGMTGLNPSINATQGLIIEAIITFVLVLTVE-AVCDDRRTDIKG 195
E + ++ATQ T + +E A +D ++ KG
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQ-------FTQPALTLMEKAAFEDLKS--KG 1751
Query: 196 SVP----VAVGLAITCCH-------LAAI 213
+P A G H LA++
Sbjct: 1752 LIPADATFA-G------HSLGEYAALASL 1773
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.015
Identities = 17/171 (9%), Positives = 51/171 (29%), Gaps = 40/171 (23%)
Query: 11 CNQVVSLWAIPAE---------NNLKDSIRM--------RGVIGIHDVRDKNIWRALIAE 53
Q+ W ++ ++++ +R ++ + +V++ W A
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--- 262
Query: 54 LIGTFVLVFVGTGSIMWPNDPNTVDVTKIAL---TFGF----VIATIAQAIGHVSG---- 102
+ +L+ + + + T I+L + V + + + +
Sbjct: 263 NLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 103 --CHINPAV--TIGLFCSGHISLLKGFFYI-IMQCVGAVAGSAVLEAVTPN 148
NP I ++ + ++ + + S L + P
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPA 369
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 27.4 bits (60), Expect = 5.4
Identities = 11/86 (12%), Positives = 24/86 (27%), Gaps = 6/86 (6%)
Query: 47 WRALIAELIGTFVLVFVGTGSIMW--PNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCH 104
WR L F+L+ ++ F F + T+A +G
Sbjct: 42 WRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLA-TVG---YGD 97
Query: 105 INPAVTIGLFCSGHISLLKGFFYIIM 130
++P + + + +
Sbjct: 98 MHPQTVYAHWIATLEIFVGMSSIALA 123
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 26.8 bits (60), Expect = 9.6
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 33 RGVIGIHDVRDKNIWRALIAE----LIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGF 88
R + D+ ++ R + E L+ L F+ G + W P + V ++L
Sbjct: 363 RA-LATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIV 421
Query: 89 VIATIA 94
A +
Sbjct: 422 FFANLV 427
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.451
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,344,141
Number of extensions: 270683
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 26
Length of query: 274
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 182
Effective length of database: 4,133,061
Effective search space: 752217102
Effective search space used: 752217102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.4 bits)