RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8647
(274 letters)
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Length = 249
Score = 169 bits (429), Expect = 2e-52
Identities = 92/224 (41%), Positives = 137/224 (61%), Gaps = 9/224 (4%)
Query: 39 HDVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTK--------IALTFGFVI 90
+ + K WRA++AE + + +F+ GS + + P + T ++L FG I
Sbjct: 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62
Query: 91 ATIAQAIGHVSGCHINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPC 150
AT+AQ++GH+SG H+NPAVT+GL S IS+L+ YII QCVGA+ +A+L +T +
Sbjct: 63 ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP 122
Query: 151 -CKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCH 209
LG+ L P +N+ QGL IE I T LVL V A D RR D+ GS P+A+G ++ H
Sbjct: 123 DNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGH 182
Query: 210 LAAIKFTGASMNPARTLGPAVIGNHWDNIWVYWAGPILGGVLAG 253
L AI +TG +NPAR+ G +VI +++ + W++W GP +G LA
Sbjct: 183 LLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAV 226
Score = 40.9 bits (95), Expect = 7e-05
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 45 NIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCH 104
N + L E+IGT LV + L GF +A +GC
Sbjct: 136 NSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS---GPLAIGFSVALGHLLAIDYTGCG 192
Query: 105 INPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAV 141
INPA + G H + + + + +GA +
Sbjct: 193 INPARSFGSSVITH-NFQDHWIFWVGPFIGAALAVLI 228
Score = 33.2 bits (75), Expect = 0.025
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 168 LIIEAIITFVLVLTVEAVCDDRRTDIKGS-----------VPVAVGLAITCCHLAAIKFT 216
++ E + + + IK + V +A GL+I + +
Sbjct: 14 VVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHIS 73
Query: 217 GASMNPARTLGPAVIGN-HWDNIWVYWAGPILGGVLAGAGCLCLCHSMP 264
GA +NPA TLG + +Y +G ++A A + S+P
Sbjct: 74 GAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP 122
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId:
9913]}
Length = 234
Score = 165 bits (418), Expect = 5e-51
Identities = 86/208 (41%), Positives = 125/208 (60%), Gaps = 2/208 (0%)
Query: 47 WRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCHIN 106
WRA+ AE + VF G G+ + P + V ++AL FG +AT+ QA+GH+SG H+N
Sbjct: 5 WRAICAEFFASLFYVFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVN 63
Query: 107 PAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNPC-CKLGMTGLNPSINAT 165
PAVT +SLL+ Y++ Q +GAVAG+AVL +VTP L + L+P ++
Sbjct: 64 PAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG 123
Query: 166 QGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAIKFTGASMNPART 225
Q I+E +T VL + A D+RR GSV +AVG ++T HL + +TGA MNPAR+
Sbjct: 124 QATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARS 183
Query: 226 LGPAVIGNHWDNIWVYWAGPILGGVLAG 253
PA++ ++ N WVYW GP++G L
Sbjct: 184 FAPAILTRNFTNHWVYWVGPVIGAGLGS 211
Score = 33.5 bits (76), Expect = 0.017
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 45 NIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCH 104
++ +A I E+ T V + ++ + +AL GF + + +G
Sbjct: 121 SVGQATIVEIFLTLQFVLCIFATY---DERRNGRLGSVALAVGFSLTLGHLFGMYYTGAG 177
Query: 105 INPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAV 141
+NPA + + + Y + +GA GS +
Sbjct: 178 MNPARSFAPAILT-RNFTNHWVYWVGPVIGAGLGSLL 213
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 134 bits (337), Expect = 1e-38
Identities = 64/242 (26%), Positives = 97/242 (40%), Gaps = 34/242 (14%)
Query: 46 IWRALIAELIGTFVLVFVGTGSIM-WPNDPNTVDVTKIALTFGFVIATIAQAIGHVSGCH 104
+ IAE +GT +L+F G G + + +I++ +G +A VSG H
Sbjct: 2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAH 61
Query: 105 INPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNP--------------- 149
+NPAVTI L+ K +I+ Q GA +A++ + N
Sbjct: 62 LNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSV 121
Query: 150 ----CCKLGMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKG-SVPVAVGLA 204
T NP IN Q +E +IT +L+ + A+ DD +G P+ +GL
Sbjct: 122 ESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLL 181
Query: 205 ITCCHLAAIKFTGASMNPARTLGPAVI-------------GNHWDNIWVYWAGPILGGVL 251
I + TG +MNPAR GP V G V GPI+G ++
Sbjct: 182 IAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIV 241
Query: 252 AG 253
Sbjct: 242 GA 243
Score = 37.4 bits (86), Expect = 0.001
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 14/126 (11%)
Query: 28 DSIRMRGVIGIHDVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFG 87
+S+ + G + N +A E++ T +L+ + + + L G
Sbjct: 122 ESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILA--LTDDGNGVPRGPLAPLLIG 179
Query: 88 FVIATIAQAIGHVSGCHINPAVTIG------------LFCSGHISLLKGFFYIIMQCVGA 135
+IA I ++G ++G +NPA G + +G + + VGA
Sbjct: 180 LLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGA 239
Query: 136 VAGSAV 141
+ G+
Sbjct: 240 IVGAFA 245
Score = 34.4 bits (78), Expect = 0.008
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
Query: 165 TQGLIIEAIITFVLVLTVEAVCDDRRTDIKGS----VPVAVGLAITCCHLAAIKFTGASM 220
I E + T +L+ + + V GL + +GA +
Sbjct: 3 KGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHL 62
Query: 221 NPARTLGPAVIGNH-WDNIWVYWAGPILGGVLAGAGCLCLCHSM 263
NPA T+ + + + + G A A L +++
Sbjct: 63 NPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNL 106
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Length = 231
Score = 128 bits (323), Expect = 7e-37
Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 16/222 (7%)
Query: 46 IWRALIAELIGTFVLVFVGTGS-IMWPNDPNT-VDVTKIALTFGFVIATIAQAIGHVSGC 103
++R L AE GTF LVF G GS ++ P + +AL FG + T+A A+GH+SG
Sbjct: 1 MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG 60
Query: 104 HINPAVTIGLFCSGHISLLKGFFYIIMQCVGAVAGSAVLEAVTPNP----------CCKL 153
H NPAVTIGL+ G + Y+I Q VG + +A+L +
Sbjct: 61 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNG 120
Query: 154 GMTGLNPSINATQGLIIEAIITFVLVLTVEAVCDDRRTDIKGSVPVAVGLAITCCHLAAI 213
+ L++E +++ +L + D G P+A+GLA+T HL +I
Sbjct: 121 YGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAP--AGFAPIAIGLALTLIHLISI 178
Query: 214 KFTGASMNPARTLGPAVI--GNHWDNIWVYWAGPILGGVLAG 253
T S+NPAR+ A+ G + +W +W PI+GG++ G
Sbjct: 179 PVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGG 220
Score = 36.7 bits (84), Expect = 0.002
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 37 GIHDVRDKNIWRALIAELIGTFVLVFVGTGSIMWPNDPNTVDVTKIALTFGFVIATIAQA 96
G H ++ AL+ EL+ + + V G+ + G + I
Sbjct: 122 GEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFA-----PIAIGLALTLIHLI 176
Query: 97 IGHVSGCHINPAVTIGL-FCSGHISLLKGFFYIIMQCVGAVAGSAV 141
V+ +NPA + + G +L + +F+ ++ VG + G +
Sbjct: 177 SIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLI 222
Score = 30.5 bits (68), Expect = 0.17
Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 168 LIIEAIITFVLVLTVE--AVCDDRRTDIKGS---VPVAVGLAITCCHLAAIKFTGASMNP 222
L E TF LV AV ++ V +A GL + A +G NP
Sbjct: 5 LAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNP 64
Query: 223 ARTLGPAVIGNH-WDNIWVYWAGPILGGVLAGAGCLCLCHSMPSLQPRTSLIT 274
A T+G G + Y ++GG++A A + S
Sbjct: 65 AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFA 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.140 0.451
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,052,135
Number of extensions: 47359
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 13
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (23.9 bits)