BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8651
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 23/195 (11%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVN--PKEIKVTLGEH 158
IVGG+ ++ +PW+ AL + CGA+L+++ +++AAHC+ G N P + K LG H
Sbjct: 1 IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLH 60
Query: 159 DRLSKNESVPVI-IRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP--- 214
++ N + P I R + + + +P ++ NNDIA++ +E V++ I P CLP
Sbjct: 61 --MASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNY-TDYIQPICLPEEN 117
Query: 215 -------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 261
+L + TA+ L++ +VP+LS E+C+ IT NM+CAGY
Sbjct: 118 QVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQ-MPEYNITENMVCAGYE 176
Query: 262 EGKRDSCQGDSGGPL 276
G DSCQGDSGGPL
Sbjct: 177 AGGVDSCQGDSGGPL 191
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G+I +AGWG L + TA+ L++ +VP+LS E+C+ IT NM+CAGY G D
Sbjct: 123 GRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQ-MPEYNITENMVCAGYEAGGVD 181
Query: 68 SCQGDSGGPL 77
SCQGDSGGPL
Sbjct: 182 SCQGDSGGPL 191
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 105/197 (53%), Gaps = 25/197 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKK----GKFYCGATLIAKRHVLTAAHCIEGV---NPKEIKV 153
IVGG L EFP+ + + +CGA++ + + +TA HC+ G NP +++
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 154 TLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACL 213
GE D +S NE II V + I H +F + +NDI+LL++ + F + P L
Sbjct: 61 VAGELD-MSVNEGSEQII-TVSKIILHENFDYNLLDNDISLLKLSGSLTFN-DNVAPIAL 117
Query: 214 P--------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
P + E T + L+KV VP++S+E+C+ A Y A I ++M+CAG
Sbjct: 118 PEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCR-ADYGADEILDSMICAG 176
Query: 260 YAEGKRDSCQGDSGGPL 276
EG +DSCQGDSGGPL
Sbjct: 177 VPEGGKDSCQGDSGGPL 193
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
TG + IV GWG E T + L+KV VP++S+E+C+ A Y A I ++M+CAG EG +
Sbjct: 125 TGDV-IVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCR-ADYGADEILDSMICAGVPEGGK 182
Query: 67 DSCQGDSGGPL 77
DSCQGDSGGPL
Sbjct: 183 DSCQGDSGGPL 193
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 25/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVN--PKEIKVTLGEH 158
IVGG+ K +PW+ L + CGA+L++ +++AAHC+ G N P + LG H
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLH 60
Query: 159 --DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP-- 214
L+ ++VP +I ++ + +P ++ +NDIA++ +E V++ I P LP
Sbjct: 61 MKSNLTSPQTVPRLIDEI---VINPHYNRRRKDNDIAMMHLEFKVNY-TDYIQPISLPEE 116
Query: 215 --------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
++ + TA+ L++ +VP+LS E C+ IT NM+CAGY
Sbjct: 117 NQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQ-MPEYNITENMICAGY 175
Query: 261 AEGKRDSCQGDSGGPL 276
EG DSCQGDSGGPL
Sbjct: 176 EEGGIDSCQGDSGGPL 191
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+AGWG + + TA+ L++ +VP+LS E C+ IT NM+CAGY EG DSCQGD
Sbjct: 128 IAGWGTVVYQGTTADILQEADVPLLSNERCQQQ-MPEYNITENMICAGYEEGGIDSCQGD 186
Query: 73 SGGPL 77
SGGPL
Sbjct: 187 SGGPL 191
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 156
IVGG + E+PW L + + CG ++I + +LTAAHC GV +PK ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
++ E V+ I H + ++ DIALL++E+ V++ Q P CLP
Sbjct: 61 ILNQAEIKEDTSFF--GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQ-RPICLPSK 117
Query: 217 SLDE----------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY
Sbjct: 118 GDRNVIYTDCWVTGWGYRALRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 REGGKDACKGDSGGPL 192
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGYRALRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 156
IVGG + E+PW L + + CG ++I + +LTAAHC GV +PK ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
++ E V+ I H + ++ DIALL++E+ V++ Q P CLP
Sbjct: 61 ILNQAEIKEDTSFF--GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQ-RPICLPSK 117
Query: 217 SLDE----------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY
Sbjct: 118 GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 REGGKDACKGDSGGPL 192
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 156
IVGG + E+PW L + + CG ++I + +LTAAHC GV +PK ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
++ E V+ I H + ++ DIALL++E+ V++ Q P CLP
Sbjct: 61 ILNQSEIKEDTSFF--GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQ-RPICLPSK 117
Query: 217 SLDE----------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY
Sbjct: 118 GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 REGGKDACKGDSGGPL 192
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 156
IVGG + E+PW L + + CG ++I + +LTAAHC GV +PK ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
++ E V+ I H + ++ DIALL++E+ V++ Q P CLP
Sbjct: 61 ILNQAEIAEDTSFF--GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQ-RPICLPSK 117
Query: 217 SLDE----------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY
Sbjct: 118 GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 REGGKDACKGDSGGPL 192
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 24/197 (12%)
Query: 100 RIVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTL 155
RIVGG + E+PW L + + CG ++I + +LTAAHC GV +PK ++V
Sbjct: 387 RIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYS 446
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPG 215
G ++ E V+ I H + ++ DIALL++E+ V++ Q P CLP
Sbjct: 447 GILNQSEIKEDTSFF--GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQ-RPICLPS 503
Query: 216 NSLDE----------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
R N+L+K ++P+++ EEC+ Y +IT+ M+CAG
Sbjct: 504 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAG 562
Query: 260 YAEGKRDSCQGDSGGPL 276
Y EG +D+C+GDSGGPL
Sbjct: 563 YREGGKDACKGDSGGPL 579
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY EG +D+C+GD
Sbjct: 516 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGD 574
Query: 73 SGGPL 77
SGGPL
Sbjct: 575 SGGPL 579
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKK---GKFYCGATLIAKRHVLTAAHCIEGVNPKEI-KVTLG 156
IVGG + E+PW +L K + CG +LI + VLTAAHC +G+ +++ ++ G
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
+ + P ++K I H ++ +S N+DIAL+++++ +++ Q P LP
Sbjct: 61 ILELSDITKDTP--FSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQ-KPISLPSK 117
Query: 217 S----------------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ N L+KV +P+++ EEC+ Y +IT M+CAGY
Sbjct: 118 GDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKR-YQDYKITQRMVCAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 KEGGKDACKGDSGGPL 192
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG E+ N L+KV +P+++ EEC+ Y +IT M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGFSKEKGEIQNILQKVNIPLVTNEECQKR-YQDYKITQRMVCAGYKEGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 23/192 (11%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP----- 214
R ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PA LP
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPASLPTAPPA 115
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+ + L+ ++ P+LS+ +C+++ +IT+NM C G+ EG
Sbjct: 116 TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS--YPGKITSNMFCVGFLEGG 173
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 174 KDSCQGDSGGPV 185
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 7 TGKIGIVAGWGRL-DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 65
TG +++GWG + L+ ++ P+LS+ +C+++ +IT+NM C G+ EG
Sbjct: 116 TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS--YPGKITSNMFCVGFLEGG 173
Query: 66 RDSCQGDSGGPL 77
+DSCQGDSGGP+
Sbjct: 174 KDSCQGDSGGPV 185
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKK---GKFYCGATLIAKRHVLTAAHCIEGVNPKEI-KVTLG 156
IVGG + E+PW +L K + CG +LI + VLTAAHC +G+ +++ ++ G
Sbjct: 1 IVGGTNSSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
+ + P ++K I H ++ +S N+DIAL+++++ +++ Q P LP
Sbjct: 61 ILNLSDITKDTP--FSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQ-KPISLPSK 117
Query: 217 S----------------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ N L+KV +P+++ EEC+ Y +IT M+CAGY
Sbjct: 118 GDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKR-YQDYKITQRMVCAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 KEGGKDACKGDSGGPL 192
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG E+ N L+KV +P+++ EEC+ Y +IT M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGFSKEKGEIQNILQKVNIPLVTNEECQKR-YQDYKITQRMVCAGYKEGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1PQ5|A Chain A, Trypsin At Ph 5, 0.85 A
pdb|1PQ7|A Chain A, Trypsin At 0.8 A, Ph5 BORAX
pdb|1PQ8|A Chain A, Trypsin At Ph 4 At Atomic Resolution
pdb|2G51|A Chain A, Anomalous Substructure Of Trypsin (P1)
pdb|2G52|A Chain A, Anomalous Substructure Of Trypsin (P21)
pdb|1TRY|A Chain A, Structure Of Inhibited Trypsin From Fusarium Oxysporum At
1.55 Angstroms
pdb|2VU8|E Chain E, Crystal Structure Of An Insect Inhibitor With A Fungal
Trypsin
Length = 224
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 92/192 (47%), Gaps = 24/192 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG +FP+I ++++ G +CG +L+ VLTAAHC+ G ++ G R
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEME----------------SGVDFE 204
S I + HP +S NND+A+L++ SG D
Sbjct: 61 TSGG-----ITSSLSSVRVHPSYS--GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPV 113
Query: 205 APQIHPACLPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
A G + + T +L KV VPI+S C+ A Y S ITN M CAG + G
Sbjct: 114 AGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCR-AQYGTSAITNQMFCAGVSSGG 172
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 173 KDSCQGDSGGPI 184
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 8 GKIGIVAGWGRLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G VAGWG E T +L KV VPI+S C+ A Y S ITN M CAG + G +
Sbjct: 115 GSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCR-AQYGTSAITNQMFCAGVSSGGK 173
Query: 67 DSCQGDSGGPL 77
DSCQGDSGGP+
Sbjct: 174 DSCQGDSGGPI 184
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 156
IVGG + E+PW L + + CG ++I + +LTAAHC GV +PK ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
++ E V+ I H + ++ DIALL++E+ V++ Q P LP
Sbjct: 61 ILNQAEIKEDTSFF--GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQ-RPISLPSK 117
Query: 217 SLDE----------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY
Sbjct: 118 GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 REGGKDACKGDSGGPL 192
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
Length = 237
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 110/212 (51%), Gaps = 29/212 (13%)
Query: 95 VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVT 154
V+ + +IVGG + P+ +L G +CG +LI + V++AAHC + I+V
Sbjct: 9 VDDDDKIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVR 63
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
LGE D ++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 64 LGE-DNINVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLP 120
Query: 215 ---------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
GN+ + L+ ++ PILS+ CKSA +IT+NM CAG
Sbjct: 121 TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAG 178
Query: 260 YAEGKRDSCQGDSGGPLQIAVARPGKMEATLS 291
Y EG +DSCQGDSGGP V GK++ +S
Sbjct: 179 YLEGGKDSCQGDSGGP----VVCSGKLQGIVS 206
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 131 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 188
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 189 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 230
>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
pdb|2TGP|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2TPI|Z Chain Z, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3TPI|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|4TPI|Z Chain Z, The Refined 2.2-angstroms (0.22-nm) X-ray Crystal
Structure Of The Ternary Complex Formed By Bovine
Trypsinogen, Valine-valine And The Arg15 Analogue Of
Bovine Pancreatic Trypsin Inhibitor
pdb|1BTZ|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTX|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTW|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTP|A Chain A, Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4-
(Amidinophenoxy)-Carbonyl]phenyl]-2-Methyl-2-Propenoyl]-
N- Allylglycine Methanesulfonate To Bovine Trypsin,
Revealed By The Crystal Structure Of The Complex
pdb|1BTY|A Chain A, Crystal Structure Of Beta-Trypsin In Complex With
Benzamidine
pdb|1TGB|A Chain A, Crystal Structure Of Bovine Trypsinogen At 1.8 Angstroms
Resolution. Ii. Crystallographic Refinement, Refined
Crystal Structure And Comparison With Bovine Trypsin
pdb|1TGC|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TGN|A Chain A, Structure Of Bovine Trypsinogen At 1.9 Angstroms
Resolution
pdb|1TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TNG|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNH|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNI|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNJ|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNK|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNL|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|2TGA|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|2TGD|A Chain A, Lack Of The Transition State Stabilization Site Is A
Factor In The Inactivity Of Trypsinogen, A Serine
Protease Zymogen. Structure Of Dfp Inhibited Bovine
Trypsinogen At 2.1 Angstroms Resolution
pdb|2TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
Length = 229
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 110/212 (51%), Gaps = 29/212 (13%)
Query: 95 VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVT 154
V+ + +IVGG + P+ +L G +CG +LI + V++AAHC + I+V
Sbjct: 1 VDDDDKIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVR 55
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
LGE D ++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 56 LGE-DNINVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLP 112
Query: 215 ---------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
GN+ + L+ ++ PILS+ CKSA +IT+NM CAG
Sbjct: 113 TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAG 170
Query: 260 YAEGKRDSCQGDSGGPLQIAVARPGKMEATLS 291
Y EG +DSCQGDSGGP V GK++ +S
Sbjct: 171 YLEGGKDSCQGDSGGP----VVCSGKLQGIVS 198
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 123 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 180
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 181 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 222
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 156
IVGG + E+PW L + + CG ++I + +LTAAHC GV +PK ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
++ E V+ I H + ++ DIALL++E+ V++ Q P LP
Sbjct: 61 ILNQSEIKEDTSFF--GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQ-RPISLPSK 117
Query: 217 SLDE----------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY
Sbjct: 118 GERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 REGGKDACKGDSGGPL 192
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 156
IVGG + E+PW L + + CG ++I + +LTAAHC GV +PK ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
++ E V+ I H + ++ DIALL++E+ V++ Q P LP
Sbjct: 61 ILNQSEIKEDTSFF--GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQ-RPISLPSK 117
Query: 217 SLDE----------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY
Sbjct: 118 GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 REGGKDACKGDSGGPL 192
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247
pdb|1F0U|A Chain A, Bovine Trypsin Complexed With Rpr128515
pdb|1EZX|C Chain C, Crystal Structure Of A Serpin:protease Complex
pdb|1LQE|A Chain A, Crystal Structure Of Trypsin In Complex With 79.
pdb|1UTN|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTO|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-ray Structures And Association Constant Measurements
pdb|1UTP|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTQ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|2BY5|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY6|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY7|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY8|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY9|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BYA|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 243
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 110/212 (51%), Gaps = 29/212 (13%)
Query: 95 VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVT 154
V+ + +IVGG + P+ +L G +CG +LI + V++AAHC + I+V
Sbjct: 15 VDDDDKIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVR 69
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
LGE D ++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 70 LGE-DNINVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLP 126
Query: 215 ---------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
GN+ + L+ ++ PILS+ CKSA +IT+NM CAG
Sbjct: 127 TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAG 184
Query: 260 YAEGKRDSCQGDSGGPLQIAVARPGKMEATLS 291
Y EG +DSCQGDSGGP V GK++ +S
Sbjct: 185 YLEGGKDSCQGDSGGP----VVCSGKLQGIVS 212
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 137 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 194
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 195 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 236
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 156
IVGG + E+PW L + + CG ++I + +LTAAHC GV +PK ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
++ E V+ I H + ++ DIALL++E+ V++ Q P LP
Sbjct: 61 ILNQAEIAEDTSFF--GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQ-RPISLPSK 117
Query: 217 SLDE----------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY
Sbjct: 118 GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 REGGKDACKGDSGGPL 192
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 156
IVGG + E+PW L + + CG ++I + +LTAAHC GV +PK ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
++ E V+ I H + ++ DIALL++E+ V++ Q P LP
Sbjct: 61 ILNQAEIAEDTSFF--GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQ-RPISLPSK 117
Query: 217 SLDE----------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY
Sbjct: 118 GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 REGGKDACKGDSGGPL 192
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 28/206 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLXDSRVASISLPTSCASA 113
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA +IT+NM CAGY EG +
Sbjct: 114 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGK 171
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 172 DSCQGDSGGP----VVCSGKLQGIVS 193
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 118 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 175
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 176 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 217
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 24/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 156
IVGG + E+PW L + + CG ++I + +LTAAHC GV +PK ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
++ E V+ I H + ++ DIALL++E+ V++ Q P LP
Sbjct: 61 ILNQSEIAEDTSFF--GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQ-RPISLPSK 117
Query: 217 SLDE----------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY
Sbjct: 118 GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGY 176
Query: 261 AEGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 177 REGGKDACKGDSGGPL 192
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG R N+L+K ++P+++ EEC+ Y +IT+ M+CAGY EG +D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGD 187
Query: 73 SGGPL 77
SGGPL
Sbjct: 188 SGGPL 192
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 27/196 (13%)
Query: 100 RIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH 158
RIVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G
Sbjct: 15 RIVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG-- 70
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL 218
DR ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 71 DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDW 129
Query: 219 -------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
E+ + L+ +EVP + CK + S+ IT NM CAG
Sbjct: 130 AESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAG 187
Query: 260 YAEGKRDSCQGDSGGP 275
Y + D+CQGDSGGP
Sbjct: 188 YDTKQEDACQGDSGGP 203
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 136 TQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 193
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 194 DACQGDSGGP 203
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 27/198 (13%)
Query: 95 VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVT 154
V+ + +IVGG + + P+ +L G +CG +LI + V++AAHC + I+V
Sbjct: 17 VDDDDKIVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVR 71
Query: 155 LGEHD--RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAP----QI 208
LGEH+ L NE + I+HP+F NNDI L+++ S V A +
Sbjct: 72 LGEHNINVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHVATVAL 127
Query: 209 HPACLP----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
+C P GN+L + L+ ++ P+L + +C+++ +IT+NM+C
Sbjct: 128 PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCV 185
Query: 259 GYAEGKRDSCQGDSGGPL 276
G+ EG +DSCQGDSGGP+
Sbjct: 186 GFLEGGKDSCQGDSGGPV 203
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 139 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 196
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 197 GDSGGPV 203
>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution
pdb|1PQA|A Chain A, Trypsin With Pmsf At Atomic Resolution
Length = 224
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 91/192 (47%), Gaps = 24/192 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG +FP+I ++++ G +CG +L+ VLTAAHC+ G ++ G R
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEME----------------SGVDFE 204
S I + HP + S NND+A+L++ SG D
Sbjct: 61 TSGG-----ITSSLSSVRVHPSY--SGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPV 113
Query: 205 APQIHPACLPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
A G + + T +L KV VPI+S C+ A Y S ITN M CAG + G
Sbjct: 114 AGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCR-AQYGTSAITNQMFCAGVSSGG 172
Query: 265 RDSCQGDSGGPL 276
+DSCQGD GGP+
Sbjct: 173 KDSCQGDXGGPI 184
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 8 GKIGIVAGWGRLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G VAGWG E T +L KV VPI+S C+ A Y S ITN M CAG + G +
Sbjct: 115 GSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCR-AQYGTSAITNQMFCAGVSSGGK 173
Query: 67 DSCQGDSGGPL 77
DSCQGD GGP+
Sbjct: 174 DSCQGDXGGPI 184
>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 243
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 29/212 (13%)
Query: 95 VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVT 154
V+ + +IVGG + P+ +L G +CG +LI + V++AAHC + I+V
Sbjct: 15 VDDDDKIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVR 69
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
LGE D ++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 70 LGE-DNINVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLP 126
Query: 215 ---------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
GN+ + L+ ++ PILS+ CKSA +IT+NM CAG
Sbjct: 127 TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAG 184
Query: 260 YAEGKRDSCQGDSGGPLQIAVARPGKMEATLS 291
Y EG +DSCQGD+GGP V GK++ +S
Sbjct: 185 YLEGGKDSCQGDAGGP----VVCSGKLQGIVS 212
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 137 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 194
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GD+GGP V GK++ I Q+ G TK+ + WI
Sbjct: 195 GDAGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 236
>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To
Atomic Resolution
pdb|1XVO|A Chain A, Trypsin From Fusarium Oxysporum At Ph 6
pdb|1FY5|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDN|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FY4|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FN8|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDQ|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
Length = 224
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Query: 102 VGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRL 161
VGG +FP+I ++++ G +CG +L+ VLTAAHC+ G ++ G R
Sbjct: 2 VGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRT 61
Query: 162 SKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEME----------------SGVDFEA 205
S I + HP +S NND+A+L++ SG D A
Sbjct: 62 SGG-----ITSSLSSVRVHPSYS--GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVA 114
Query: 206 PQIHPACLPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
G + + T +L KV VPI+S C+ A Y S ITN M CAG + G +
Sbjct: 115 GSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCR-AQYGTSAITNQMFCAGVSSGGK 173
Query: 266 DSCQGDSGGPL 276
DSCQGDSGGP+
Sbjct: 174 DSCQGDSGGPI 184
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 8 GKIGIVAGWGRLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G VAGWG E T +L KV VPI+S C+ A Y S ITN M CAG + G +
Sbjct: 115 GSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCR-AQYGTSAITNQMFCAGVSSGGK 173
Query: 67 DSCQGDSGGPL 77
DSCQGDSGGP+
Sbjct: 174 DSCQGDSGGPI 184
>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Magnesium(Ii) Chelate
pdb|1G3C|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff Base
Iron(Iii) Chelate
pdb|1G3D|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Copper (Ii) Chelate
pdb|1G3E|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff-Base
Copper (Ii) Chelate
Length = 228
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 29/211 (13%)
Query: 96 ERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
+ + +IVGG + P+ +L G +CG +LI + V++AAHC + I+V L
Sbjct: 1 DDDDKIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRL 55
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP- 214
GE D ++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 56 GE-DNINVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPT 112
Query: 215 --------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
GN+ + L+ ++ PILS+ CKSA +IT+NM CAGY
Sbjct: 113 SCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGY 170
Query: 261 AEGKRDSCQGDSGGPLQIAVARPGKMEATLS 291
EG +DSCQGDSGGP V GK++ +S
Sbjct: 171 LEGGKDSCQGDSGGP----VVCSGKLQGIVS 197
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 122 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 179
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 180 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 221
>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|B Chain B, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|C Chain C, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|D Chain D, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species
Length = 223
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 100/191 (52%), Gaps = 25/191 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + + + A+L + G +CG +LI+ V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYECRKNSASYQASL-QSGYHFCGGSLISSTWVVSAAHCYK----SRIQVRLGEHN- 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ NE I VK I HP ++ N +NDI L+++ + + LP
Sbjct: 55 IAVNEGTEQFIDSVK-VIMHPSYNSRNLDNDIMLIKLSKPASLNS-YVSTVALPSSCASS 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN ++LR +++PILS C SA +IT+NM CAG+ EG +
Sbjct: 113 GTRCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCNSA--YPGQITSNMFCAGFMEGGK 170
Query: 266 DSCQGDSGGPL 276
DSCQGDSGGP+
Sbjct: 171 DSCQGDSGGPV 181
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 8/113 (7%)
Query: 7 TGKIGIVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 65
+G +V+GWG L ++LR +++PILS C SA +IT+NM CAG+ EG
Sbjct: 112 SGTRCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCNSA--YPGQITSNMFCAGFMEGG 169
Query: 66 RDSCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWIAA 117
+DSCQGDSGGP V G+++ + QR G TK+ + WI++
Sbjct: 170 KDSCQGDSGGP----VVCNGQLQGVVSWGYGCAQRNKPGVYTKVCNYRSWISS 218
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 27/198 (13%)
Query: 95 VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVT 154
V+ + +IVGG + + P+ +L G +CG +LI + V++AAHC + I+V
Sbjct: 5 VDDDDKIVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVR 59
Query: 155 LGEHD--RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQI 208
LGEH+ L NE + I+HP+F NNDI L+++ S V A +
Sbjct: 60 LGEHNINVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL 115
Query: 209 HPACLP----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
+C P GN+L + L+ ++ P+L + +C+++ +IT+NM+C
Sbjct: 116 PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCV 173
Query: 259 GYAEGKRDSCQGDSGGPL 276
G+ EG +DSCQGD+GGP+
Sbjct: 174 GFLEGGKDSCQGDAGGPV 191
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 127 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 184
Query: 71 GDSGGPL 77
GD+GGP+
Sbjct: 185 GDAGGPV 191
>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 223
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASVSLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA +IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP+ A GK++ +S
Sbjct: 171 DSCQGDSGGPVVCA----GKLQGIVS 192
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP+ A GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGPVVCA----GKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 27/198 (13%)
Query: 95 VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVT 154
V+ + IVGG + + P+ +L G +CG +LI + V++AAHC + I+V
Sbjct: 5 VDDDDAIVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVR 59
Query: 155 LGEHD--RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQI 208
LGEH+ L NE + I+HP+F NNDI L+++ S V A +
Sbjct: 60 LGEHNINVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL 115
Query: 209 HPACLP----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
+C P GN+L + L+ ++ P+L + +C+++ +IT+NM+C
Sbjct: 116 PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCV 173
Query: 259 GYAEGKRDSCQGDSGGPL 276
G+ EG +DSCQGDSGGP+
Sbjct: 174 GFLEGGKDSCQGDSGGPV 191
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 127 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 184
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 185 GDSGGPV 191
>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5A|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5B|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5U|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
Length = 223
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 106/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA +IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ + L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
+ D+CQGDSGGP
Sbjct: 174 DTKQEDACQGDSGGP 188
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 121 TQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 178
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 179 DACQGDSGGP 188
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ + L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
+ D+CQGDSGGP
Sbjct: 174 DTKQEDACQGDSGGP 188
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 121 TQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 178
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 179 DACQGDSGGP 188
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ + L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
+ D+CQGDSGGP
Sbjct: 174 DTKQEDACQGDSGGP 188
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 121 TQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 178
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 179 DACQGDSGGP 188
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ + L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
+ D+CQGDSGGP
Sbjct: 174 DTKQEDACQGDSGGP 188
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 121 TQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 178
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 179 DACQGDSGGP 188
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ + L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
+ D+CQGDSGGP
Sbjct: 174 DTKQEDACQGDSGGP 188
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 121 TQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 178
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 179 DACQGDSGGP 188
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ + L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
+ D+CQGDSGGP
Sbjct: 174 DTKQEDACQGDSGGP 188
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 121 TQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 178
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 179 DACQGDSGGP 188
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ + L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
+ D+CQGDSGGP
Sbjct: 174 DTKQEDACQGDSGGP 188
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 121 TQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 178
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 179 DACQGDSGGP 188
>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk
Type Protease Inhibitor And Its Interaction With Trypsin
pdb|1TPA|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2PTC|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1PPC|E Chain E, Geometry Of Binding Of The Benzamidine-and Arginine-based
Inhibitors
N-alpha-(2-naphthyl-sulphonyl-glycyl)-dl-p-
amidinophenylalanyl- Piperidine (napap) And
(2r,4r)-4-methyl-1-[n-alpha-(3-methyl-1,2,3,4-
Tetrahydro-8-quinolinesulphonyl)-l-arginyl]-2-piperidine
Carboxylic Acid (mqpa) To Human Alpha-thrombin: X-ray
Crystallographic Determination Of The Napap-trypsin
Complex And Modeling Of Napap- Thrombin And
Mqpa-thrombin
pdb|1PPE|E Chain E, The Refined 2.0 Angstroms X-Ray Crystal Structure Of The
Complex Formed Between Bovine Beta-Trypsin And Cmti-I, A
Trypsin Inhibitor From Squash Seeds (Cucurbita Maxima):
Topological Similarity Of The Squash Seed Inhibitors
With The Carboxypeptidase A Inhibitor From Potatoes
pdb|1PPH|E Chain E, Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of
M-Amidino-, P-Amidino-And P-Guanidino Phenylalanine To
Thrombin And Trypsin: X- Ray Crystal Structures Of Their
Trypsin Complexes And Modeling Of Their Thrombin
Complexes
pdb|1SMF|E Chain E, Studies On An Artificial Trypsin Inhibitor Peptide Derived
From The Mung Bean Inhibitor
pdb|1JRT|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1JRS|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1CE5|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzamidine
pdb|2BZA|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
pdb|1QCP|A Chain A, Crystal Structure Of The Rwj-51084 Bovine Pancreatic Beta-
Trypsin At 1.8 A
pdb|1SBW|A Chain A, Crystal Structure Of Mung Bean Inhibitor Lysine Active
Fragment Complex With Bovine Beta-Trypsin At 1.8a
Resolution
pdb|1YYY|1 Chain 1, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1SFI|A Chain A, High Resolution Structure Of A Potent, Cyclic Protease
Inhibitor From Sunflower Seeds
pdb|1TIO|A Chain A, High Packing Density Form Of Bovine Beta-trypsin In
Cyclohexane
pdb|2TIO|A Chain A, Low Packing Density Form Of Bovine Beta-Trypsin In
Cyclohexane
pdb|2BTC|E Chain E, Bovine Trypsin In Complex With Squash Seed Inhibitor
(Cucurbita Pepo Trypsin Inhibitor Ii)
pdb|3BTE|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta-Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTD|E Chain E, The Crystal Structures Of The Complexes Between The Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTF|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTG|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTH|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTK|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTM|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTQ|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTT|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTW|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|1QBN|A Chain A, Bovine Trypsin 2-[amino(Imino)methyl]-2-Hydroxyphenoxy]-6-
[3-(4,5-Dihydro-1h-Imidazol-2-Yl)phenoxy]pyridine-4-
Carboxylic Acid (Zk-806688) Complex
pdb|1QBO|A Chain A, Bovine Trypsin
7-[[6-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
2-Methyl-Benzimidazol-1-Yl]methyl]naphthalene-2-
Carboximidamid Zk-806711 Inhibitor Complex
pdb|1QB9|A Chain A, Bovine Trypsin
7-[[2-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
9h-Carbozol-9-Yl] Methyl]naphthalene-2-Carboximidamide
(Zk- 806450) Complex
pdb|1QB1|A Chain A, Bovine Trypsin With 1-[2-[5-[amino(imino)methyl]-2-
Hydroxyphenoxy]-6-[3-(4,
5-dihydro-1-methyl-1h-imidazol-2-
Yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid
(zk- 806974)
pdb|1QB6|A Chain A, Bovine Trypsin 3,3'-[3,5-Difluoro-4-Methyl-2, 6-
Pyridinediylbis(Oxy)]bis(Benzenecarboximidamide) (Zk-
805623) Complex
pdb|1QA0|A Chain A, Bovine Trypsin 2-Aminobenzimidazole Complex
pdb|1F2S|E Chain E, Crystal Structure Of The Complex Formed Between Bovine
Beta- Trypsin And Mcti-A, A Trypsin Inhibitor Of Squash
Family At 1.8 A Resolution
pdb|1D6R|A Chain A, Crystal Structure Of Cancer Chemopreventive Bowman-Birk
Inhibitor In Ternary Complex With Bovine Trypsin At 2.3
A Resolution. Structural Basis Of Janus-Faced Serine
Protease Inhibitor Specificity
pdb|1C9T|A Chain A, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|B Chain B, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|C Chain C, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|D Chain D, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|E Chain E, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|F Chain F, Complex Of Bdellastasin With Bovine Trypsin
pdb|1QL7|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1QL8|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1G9I|E Chain E, Crystal Structure Of Beta-Trysin Complex In Cyclohexane
pdb|1EJM|A Chain A, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|C Chain C, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|E Chain E, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1JIR|A Chain A, Crystal Structure Of Trypsin Complex With Amylamine In
Cyclohexane
pdb|1J8A|A Chain A, Crystal Structure Of Benzamidine Inhibited Bovine
Pancreatic Trypsin At 105k To 1.21a Resolution From
Laboratory Source With High Number Of Waters Modelled
pdb|1G36|A Chain A, Trypsin Inhibitor Complex
pdb|1K1P|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1O|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1N|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1M|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1L|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1J|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1I|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1EB2|A Chain A, Trypsin Inhibitor Complex (Bpo)
pdb|1GJ6|A Chain A, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1N6X|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1N6Y|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1OYQ|A Chain A, Trypsin Inhibitor Complex
pdb|1O2H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O2O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2P|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Q|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2R|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2S|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2T|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2U|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2V|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2W|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2X|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Y|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Z|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O30|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O31|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O32|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O33|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O34|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O35|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O36|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O37|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O38|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O39|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3A|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3B|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3C|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3D|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3E|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3F|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3G|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O3N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1NC6|A Chain A, Potent, Small Molecule Inhibitors Of Human Mast Cell
Tryptase. Anti-Asthmatic Action Of A Dipeptide-Based
Transition State Analogue Containing Benzothiazole
Ketone
pdb|1P2I|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2J|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2K|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OX1|A Chain A, Crystal Structure Of The Bovine Trypsin Complex With A
Synthetic 11 Peptide Inhibitor
pdb|1RXP|A Chain A, Structure Of Trypsin (Orthorhombic) With 1-(4-Tert-
Butylcarbamoyl- Piperazine-1-Carbonyl)-3-(3-Guanidino-
Propyl)-4-Oxo-Azetidine-2-Carboxylic Acid
pdb|1S0Q|A Chain A, Native Bovine Pancreatic Trypsin
pdb|1S0R|A Chain A, Bovine Pancreatic Trypsin Inhibited With Benzamidine At
Atomic Resolution
pdb|2A7H|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|1TX7|A Chain A, Bovine Trypsin Complexed With P-
Amidinophenylmethylphosphinic Acid (Ampa)
pdb|2BLV|A Chain A, Trypsin Before A High Dose X-Ray "burn"
pdb|2BLW|A Chain A, Trypsin After A High Dose X-Ray "burn"
pdb|1TX8|A Chain A, Bovine Trypsin Complexed With Amso
pdb|1Y3U|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3V|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3W|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3X|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3Y|A Chain A, Trypsin Inhibitor Complex
pdb|1YP9|A Chain A, Trypsin Inhibitor Complex
pdb|2AYW|A Chain A, Crystal Structure Of The Complex Formed Between Trypsin
And A Designed Synthetic Highly Potent Inhibitor In The
Presence Of Benzamidine At 0.97 A Resolution
pdb|2FI3|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser,
Cys38->ser) In Complex With Trypsin
pdb|2FX4|A Chain A, Bovine Trypsin Bound By 4-piperidinebutyrate To Make
Acylenzyme Complex
pdb|2FX6|A Chain A, Bovine Trypsin Complexed With 2-Aminobenzamidazole
pdb|2AGE|X Chain X, Succinyl-Aapr-Trypsin Acyl-Enzyme At 1.15 A Resolution
pdb|2AGG|X Chain X, Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
pdb|2AGI|X Chain X, The Leupeptin-Trypsin Covalent Complex At 1.14 A
Resolution
pdb|2AH4|X Chain X, Guanidinobenzoyl-Trypsin Acyl-Enzyme At 1.13 A Resolution
pdb|2G5N|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G5V|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G8T|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2F3C|E Chain E, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
pdb|2G81|E Chain E, Crystal Structure Of The Bowman-Birk Inhibitor From Vigna
Unguiculata Seeds In Complex With Beta-Trypsin At 1.55
Angstrons Resolution
pdb|2G55|A Chain A, Anomalous Substructure Of Trypsin (P3121)
pdb|2OTV|A Chain A, Crystal Structure Of The Complex Formed Between Bovine
Trypsin And Nicotinamide At 1.56 A Resolution
pdb|2J9N|A Chain A, Robotically Harvested Trypsin Complexed With Benzamidine
Containing Polypeptide Mediated Crystal Contacts
pdb|2OXS|A Chain A, Crytal Structure Of The Trypsin Complex With Benzamidine
At High Temperature (35 C)
pdb|2UUY|A Chain A, Structure Of A Tick Tryptase Inhibitor In Complex With
Bovine Trypsin
pdb|2ILN|A Chain A, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2ILN|B Chain B, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2CMY|A Chain A, Crystal Complex Between Bovine Trypsin And Veronica
Hederifolia Trypsin Inhibitor
pdb|1AQ7|A Chain A, Trypsin With Inhibitor Aeruginosin 98-b
pdb|1AUJ|A Chain A, Bovine Trypsin Complexed To Meta-Cyano-Benzylic Inhibitor
pdb|1AZ8|A Chain A, Bovine Trypsin Complexed To Bis-Phenylamidine Inhibitor
pdb|1BJU|A Chain A, Beta-Trypsin Complexed With Acpu
pdb|1BJV|A Chain A, Beta-Trypsin Complexed With Appu
pdb|1GBT|A Chain A, Structure Of An Acyl-Enzyme Intermediate During Catalysis:
(Guanidinobenzoyl) Trypsin
pdb|1MAX|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MAY|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MTS|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTU|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTV|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTW|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1TLD|A Chain A, Crystal Structure Of Bovine Beta-Trypsin At 1.5 Angstroms
Resolution In A Crystal Form With Low Molecular Packing
Density. Active Site Geometry, Ion Pairs And Solvent
Structure
pdb|1TPO|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPP|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPS|A Chain A, Atomic Structure Of The Trypsin-A90720a Complex: A Unified
Approach To Structure And Function
pdb|1TYN|A Chain A, Atomic Structure Of The Trypsin-cyclotheonamide A Complex:
Lessons For The Design Of Serine Protease Inhibitors
pdb|1XUF|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUG|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUH|A Chain A, Trypsin-Keto-Babim-Co+2, Ph 8.2
pdb|1XUI|A Chain A, Trypsin-Keto-Babim, Zn+2-Free, Ph 8.2
pdb|1XUJ|A Chain A, Trypsin-Keto-Babim-Zn+2, Ph 8.2
pdb|1XUK|A Chain A, Trypsin-Babim-Sulfate, Ph 5.9
pdb|2PLX|A Chain A, Trypsin Complexed To A Synthetic Peptide From Veronica
Hederifolia
pdb|2PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3PTB|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|3PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1C1N|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1O|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1P|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1Q|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1R|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1T|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2D|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2E|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2F|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2G|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2H|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2I|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2J|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2K|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2L|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2M|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5P|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Q|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5R|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5S|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5T|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5U|A Chain A, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5V|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GHZ|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI0|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI1|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI2|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI3|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI4|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI5|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI6|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2O9Q|A Chain A, The Crystal Structure Of Bovine Trypsin Complexed With A
Small Inhibition Peptide Orb2k
pdb|2QN5|T Chain T, Crystal Structure And Functional Study Of The Bowman-Birk
Inhibitor From Rice Bran In Complex With Bovine Trypsin
pdb|2QYI|A Chain A, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|C Chain C, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2ZDK|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDL|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDM|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDN|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFS|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFT|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZHD|A Chain A, Exploring Trypsin S3 Pocket
pdb|3D65|E Chain E, Crystal Structure Of Textilinin-1, A Kunitz-Type Serine
Protease Inhibitor From The Australian Common Brown
Snake Venom, In Complex With Trypsin
pdb|3E8L|A Chain A, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|3E8L|B Chain B, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|2ZQ1|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZQ2|A Chain A, Exploring Trypsin S3 Pocket
pdb|3ITI|A Chain A, Structure Of Bovine Trypsin With The Mad Triangle B3c
pdb|3GY2|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY3|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY4|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY5|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY6|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Bis-Benzamidines Diminazene And Pentamidine
pdb|3GY7|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY8|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3AAS|A Chain A, Bovine Beta-Trypsin Bound To Meta-Guanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAU|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diguanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|B Chain B, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3M35|A Chain A, Trypsin In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3MFJ|A Chain A, Bovine Trypsin At 0.8 A Resolution, Restrained Refinement
pdb|3MI4|A Chain A, Bovine Trypsin At 0.8 A Resolution, Non-Restrained
Refinemen
pdb|3I29|A Chain A, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
pdb|3A7T|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide
pdb|3A7V|A Chain A, Crystal Structure Of Trypsin Complexed With
3-Formylbenzimidamide
pdb|3A7W|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((Tetrahydro-2h-
Pyran-2-Yloxyimino)methyl)benzimidamide (Soaking 4hours)
pdb|3A7X|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
45seconds)
pdb|3A7Y|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
3-Yloxyimino)methyl)benzimidamide (Soaking 2hours)
pdb|3A7Z|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
4-Yloxyimino)methyl)benzimidamide (Soaking 3hours)
pdb|3A80|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic Acid
(Soaking 40seconds)
pdb|3A81|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 8
Hours)
pdb|3A82|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid
pdb|3A83|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide
pdb|3A84|A Chain A, Crystal Structure Of Trypsin Complexed With(E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 5
Seconds)
pdb|3A85|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 15
Seconds)
pdb|3A86|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 30
Seconds)
pdb|3A87|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 5
Minutes)
pdb|3A88|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 30
Minutes)
pdb|3A89|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 4
Hours)
pdb|3A8A|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide And Aniline
pdb|3A8B|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((4-
Bromophenylimino)methyl)benzimidamide
pdb|3A8C|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
With Mixture Of
[(E)-2-(4-Carbamimidoylbenzylideneaminooxy)acetic Acid]
And [(E)-2-
(4-Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic
Acid])
pdb|3A8D|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Under
Aniline-Free Condition)
pdb|3LJJ|A Chain A, Bovine Trypsin In Complex With Ub-Thr 10
pdb|3LJO|A Chain A, Bovine Trypsin In Complex With Ub-Thr 11
pdb|2XTT|B Chain B, Bovine Trypsin In Complex With Evolutionary Enhanced
Schistocerca Gregaria Protease Inhibitor 1 (Sgpi-1-P02)
pdb|3NK8|A Chain A, Trypsin In Complex With Fluorine-Containing Fragment
pdb|3NKK|A Chain A, Trypsin In Complex With Fluorine Containing Fragment
pdb|3M7Q|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Pancreatic Trypsin
pdb|3RDZ|A Chain A, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|B Chain B, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3ATI|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3ATK|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3ATL|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamidine
pdb|3ATM|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXA|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3RXB|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobutanoic Acid
pdb|3RXC|A Chain A, Crystal Structure Of Trypsin Complexed With
2-Aminopyridine
pdb|3RXD|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3RXE|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide
pdb|3RXF|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminopyridine
pdb|3RXG|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminocyclohexanol
pdb|3RXH|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Imidazol-4-Yl) Ethanamine
pdb|3RXI|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXJ|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobenzoic Acid
pdb|3RXK|A Chain A, Crystal Structure Of Trypsin Complexed With Methyl
4-Amino-1-Methyl- Pyrrolidine-2-Carboxylate
pdb|3RXL|A Chain A, Crystal Structure Of Trypsin Complexed With
(2,5-Dimethyl-3-Furyl) Methanamine
pdb|3RXM|A Chain A, Crystal Structure Of Trypsin Complexed With
[2-(2-Thienyl)thiazol-4- Yl]methanamine
pdb|3RXO|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Pyrrol-1-Ylphenyl) Methanamine
pdb|3RXP|A Chain A, Crystal Structure Of Trypsin Complexed With
(1,5-Dimethylpyrazol-3- Yl)methanamine
pdb|3RXQ|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F01
And F05, Cocktail Experiment)
pdb|3RXR|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine (F01 And F03, Cocktail Experiment)
pdb|3RXS|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine (F04 And A06, Cocktail
Experiment)
pdb|3RXT|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamin (F04 And F03, Cocktail
Experiment)
pdb|3RXU|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And A06, Cocktail Experiment)
pdb|3RXV|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And F03, Cocktail Experiment)
pdb|3T25|A Chain A, Tmao-Grown Orthorhombic Trypsin (Bovine)
pdb|3T26|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Sarcosine
pdb|3T27|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Betaine
pdb|3T28|A Chain A, Tmao-Grown Trypsin (Bovine)-Previously Unreported
Tetragonal Crystal Form
pdb|3T29|A Chain A, Tmao-Grown Trigonal Trypsin (Bovine)
pdb|4AB8|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4AB9|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABA|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABB|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABD|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABE|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABF|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABG|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABH|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABI|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Pta)sfti-1(1,14), That Was 1,4-
Disubstituted With A 1,2,3-Trizol To Mimic A Trans Amide
Bond
pdb|4ABJ|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Ica)sfti-1(1,14), That Was 1,5-
Disubstituted With 1,2,3-Trizol To Mimic A Cis Amide
Bond
pdb|3VPK|A Chain A, Crystal Structure Of 6-guanidinohexanoyl Trypsin
pdb|3UNR|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Trypsin At 1.2a Resolution
pdb|3RU4|T Chain T, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
pdb|1C1S|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|4I8G|A Chain A, Bovine Trypsin At 0.8 Resolution
pdb|4I8H|A Chain A, Bovine Trypsin At 0.75 Resolution
pdb|4I8J|A Chain A, Bovine Trypsin At 0.87 A Resolution
pdb|4I8K|A Chain A, Bovine Trypsin At 0.85 Resolution
pdb|4I8L|A Chain A, Bovine Trypsin At 0.87 Resolution
pdb|4AOQ|A Chain A, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|B Chain B, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|C Chain C, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOR|A Chain A, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|B Chain B, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|C Chain C, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
Length = 223
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 106/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA +IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 101/203 (49%), Gaps = 26/203 (12%)
Query: 89 VIACGQVERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNP 148
+I + +IVGG K + P +L G +CG +L+ + V++AAHC +
Sbjct: 9 LIGAAFATEDDKIVGGYECKPYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK---- 63
Query: 149 KEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQI 208
++V LGEH+ + E I R IRHP++S N +NDI L+++ +
Sbjct: 64 SRVEVRLGEHN-IKVTEGSEQFISS-SRVIRHPNYSSYNIDNDIMLIKLSKPATLNT-YV 120
Query: 209 HPACLP---------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITN 253
P LP GN++ +N L+ + +PILS +C ++ ITN
Sbjct: 121 QPVALPTSCAPAGTMCTVSGWGNTMSSTA-DSNKLQCLNIPILSYSDCNNS--YPGMITN 177
Query: 254 NMLCAGYAEGKRDSCQGDSGGPL 276
M CAGY EG +DSCQGDSGGP+
Sbjct: 178 AMFCAGYLEGGKDSCQGDSGGPV 200
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + V+GWG +N L+ + +PILS +C ++ ITN M CAGY EG +D
Sbjct: 133 GTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGKD 190
Query: 68 SCQGDSGGPL 77
SCQGDSGGP+
Sbjct: 191 SCQGDSGGPV 200
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F +NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ + L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
+ D+CQGDSGGP
Sbjct: 174 DTKQEDACQGDSGGP 188
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 121 TQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 178
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 179 DACQGDSGGP 188
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ + L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
+ D+CQGDSGGP
Sbjct: 174 DTKQEDACQGDSGGP 188
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 121 TQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 178
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 179 DACQGDSGGP 188
>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In
Complex With Trypsin
pdb|2FTL|E Chain E, Crystal Structure Of Trypsin Complexed With Bpti At 100k
Length = 223
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 106/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLXS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA +IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F +NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ S+ IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--SSFIITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+D+CQGDSGGP+
Sbjct: 170 KDACQGDSGGPV 181
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ S+ IT+NM+C G+ EG +D+CQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--SSFIITDNMVCVGFLEGGKDACQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG K + P +L G +CG +L+ + V++AAHC + ++V LGEH+
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHN- 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
+ E I R IRHP++S N +NDI L+++ + P LP
Sbjct: 55 IKVTEGSEQFISS-SRVIRHPNYSSYNIDNDIMLIKLSKPATLNT-YVQPVALPTSCAPA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN++ +N L+ + +PILS +C ++ ITN M CAGY EG +
Sbjct: 113 GTMCTVSGWGNTMSSTA-DSNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGK 169
Query: 266 DSCQGDSGGPL 276
DSCQGDSGGP+
Sbjct: 170 DSCQGDSGGPV 180
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + V+GWG +N L+ + +PILS +C ++ ITN M CAGY EG +D
Sbjct: 113 GTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGKD 170
Query: 68 SCQGDSGGPL 77
SCQGDSGGP+
Sbjct: 171 SCQGDSGGPV 180
>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi
pdb|1ZR0|A Chain A, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
pdb|1ZR0|C Chain C, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
Length = 223
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS CKSA +IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSA--YPGQITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon
Length = 220
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG K + P +L G +CG +L+ + V++AAHC + ++V LGEH+
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHN- 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
+ E I R IRHP++S N +NDI L+++ + P LP
Sbjct: 55 IKVTEGSEQFISS-SRVIRHPNYSSYNIDNDIMLIKLSKSATLNT-YVQPVALPSSCAPA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN++ N L+ + +PILS +C ++ ITN M CAGY EG +
Sbjct: 113 GTMCTVSGWGNTMSSTA-DKNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGK 169
Query: 266 DSCQGDSGGPL 276
DSCQGDSGGP+
Sbjct: 170 DSCQGDSGGPV 180
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + V+GWG N L+ + +PILS +C ++ ITN M CAGY EG +D
Sbjct: 113 GTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGKD 170
Query: 68 SCQGDSGGPL 77
SCQGDSGGP+
Sbjct: 171 SCQGDSGGPV 180
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 101/195 (51%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R ++ E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ + L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
+ D+CQGD+GGP
Sbjct: 174 DTKQEDACQGDAGGP 188
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 121 TQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 178
Query: 67 DSCQGDSGGP 76
D+CQGD+GGP
Sbjct: 179 DACQGDAGGP 188
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 104/192 (54%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI+++ V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCEENSLPYQVSL-NSGSHFCGGSLISEQWVVSAAHCYK----TRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA-------PQIHPA 211
L NE I VK IRHP ++ +NDI L+++ S A P PA
Sbjct: 56 KVLEGNEQ---FINAVK-IIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPA 111
Query: 212 ----CL---PGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
CL GN+L + L+ ++ P+L++ ECK++ +ITN+M C G+ EG
Sbjct: 112 AGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS--YPGKITNSMFCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQ DSGGP+
Sbjct: 170 KDSCQRDSGGPV 181
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L++ ECK++ +ITN+M C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS--YPGKITNSMFCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
DSGGP+
Sbjct: 175 RDSGGPV 181
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 29/199 (14%)
Query: 95 VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVT 154
+ + +IVGG + P+ +L G +CG +LI + V++AAHC + I+V
Sbjct: 3 TDDDDKIVGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCYK----SRIQVR 57
Query: 155 LGEH--DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPAC 212
LGEH D L NE + I HP+F+ + +NDI L+++ S + ++
Sbjct: 58 LGEHNIDVLEGNEQ----FINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNS-RVATVS 112
Query: 213 LP---------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLC 257
LP GN+ + L+ ++ P+LS+ CKS+ +IT NM+C
Sbjct: 113 LPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQITGNMIC 170
Query: 258 AGYAEGKRDSCQGDSGGPL 276
G+ EG +DSCQGDSGGP+
Sbjct: 171 VGFLEGGKDSCQGDSGGPV 189
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 IVAGWGRLDERKPTANSLRK-VEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + SL + ++ P+LS+ CKS+ +IT NM+C G+ EG +DSCQ
Sbjct: 125 LISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQITGNMICVGFLEGGKDSCQ 182
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 183 GDSGGPV 189
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG K + P +L G +CG +L+ + V++AAHC + ++V LGEH+
Sbjct: 1 IVGGYECKPYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHN- 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
+ E I R IRHP++S N +NDI L+++ + P LP
Sbjct: 55 IKVTEGSEQFISS-SRVIRHPNYSSYNIDNDIMLIKLSKPATLNT-YVQPVALPTSCAPA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN++ +N L+ + +PILS +C ++ ITN M CAGY EG +
Sbjct: 113 GTMCTVSGWGNTMSSTA-DSNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGK 169
Query: 266 DSCQGDSGGPL 276
DSCQGDSGGP+
Sbjct: 170 DSCQGDSGGPV 180
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + V+GWG +N L+ + +PILS +C ++ ITN M CAGY EG +D
Sbjct: 113 GTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGKD 170
Query: 68 SCQGDSGGPL 77
SCQGDSGGP+
Sbjct: 171 SCQGDSGGPV 180
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 29/205 (14%)
Query: 102 VGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRL 161
VGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D +
Sbjct: 2 VGGYTCGANTVPYQVSL-NSGYHFCGGSLIDSQWVVSAAHCYK----SGIQVRLGE-DNI 55
Query: 162 SKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------- 214
+ E I ++I HP + + NNDI L++++S ++ ++ LP
Sbjct: 56 NVVEGNEQFIS-ASKSIVHPSYDSNTLNNDIMLIKLKSAASLDS-RVASISLPTSCASAG 113
Query: 215 --------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 266
GN+ + L+ ++ PILS+ CKSA +IT+NM CAGY EG +D
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKD 171
Query: 267 SCQGDSGGPLQIAVARPGKMEATLS 291
SCQGDSGGP V GK++ +S
Sbjct: 172 SCQGDSGGP----VVCSGKLQGIVS 192
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G D
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R + E + +V+ I+H F+ ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTAAEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM-NVAPACLPERDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ + L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
+ D+CQGDSGGP
Sbjct: 174 DTKQEDACQGDSGGP 188
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ + L+ +EVP + CK + S+ IT NM CAGY +
Sbjct: 121 TQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SSFIITQNMFCAGYDTKQE 178
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 179 DACQGDSGGP 188
>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine
Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT
REFINEMENT
Length = 223
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 29/205 (14%)
Query: 102 VGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRL 161
VGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D +
Sbjct: 2 VGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DNI 55
Query: 162 SKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------- 214
+ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 56 NVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASAG 113
Query: 215 --------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 266
GN+ + L+ ++ PILS+ CKSA +IT+NM CAGY EG +D
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKD 171
Query: 267 SCQGDSGGPLQIAVARPGKMEATLS 291
SCQGDSGGP V GK++ +S
Sbjct: 172 SCQGDSGGP----VVCSGKLQGIVS 192
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase)
Length = 223
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 105/206 (50%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA +IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGD GGP V GK++ +S
Sbjct: 171 DSCQGDXGGP----VVCSGKLQGIVS 192
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GD GGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDXGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 101/205 (49%), Gaps = 28/205 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKE-IKVTLGEHD 159
I GG+ ++PW ++T +G CG +L++++ VL+AAHC + KE +V LG H
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPG---- 215
S +E V +K I HP + DIALL++ + F I P LP
Sbjct: 61 LDSYSEDAKV--STLKDIIPHPSYLQEGSQGDIALLQLSRPITFSR-YIRPISLPAAQAS 117
Query: 216 --NSLD-------ERKP-----TANSLRKVEVPILSEEECKSAGYSASR------ITNNM 255
N L P T L+++EVP++S E C S ++ + +M
Sbjct: 118 FPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDM 177
Query: 256 LCAGYAEGKRDSCQGDSGGPLQIAV 280
+CAGY EG +D+CQGDSGGPL V
Sbjct: 178 VCAGYVEGGKDACQGDSGGPLSCPV 202
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 13 VAGWGRLDERKP--TANSLRKVEVPILSEEECKSAGYSASR------ITNNMLCAGYAEG 64
V GWG + T L+++EVP++S E C S ++ + +M+CAGY EG
Sbjct: 126 VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEG 185
Query: 65 KRDSCQGDSGGPLQIAV 81
+D+CQGDSGGPL V
Sbjct: 186 GKDACQGDSGGPLSCPV 202
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 101/205 (49%), Gaps = 28/205 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKE-IKVTLGEHD 159
I GG+ ++PW ++T +G CG +L++++ VL+AAHC + KE +V LG H
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPG---- 215
S +E V +K I HP + DIALL++ + F I P LP
Sbjct: 61 LDSYSEDAKV--STLKDIIPHPSYLQEGSQGDIALLQLSRPITFSR-YIRPISLPAAQAS 117
Query: 216 --NSLD-------ERKP-----TANSLRKVEVPILSEEECKSAGYSASR------ITNNM 255
N L P T L+++EVP++S E C S ++ + +M
Sbjct: 118 FPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDM 177
Query: 256 LCAGYAEGKRDSCQGDSGGPLQIAV 280
+CAGY EG +D+CQGDSGGPL V
Sbjct: 178 VCAGYVEGGKDACQGDSGGPLSCPV 202
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 13 VAGWGRLDERKP--TANSLRKVEVPILSEEECKSAGYSASR------ITNNMLCAGYAEG 64
V GWG + T L+++EVP++S E C S ++ + +M+CAGY EG
Sbjct: 126 VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEG 185
Query: 65 KRDSCQGDSGGPLQIAV 81
+D+CQGDSGGPL V
Sbjct: 186 GKDACQGDSGGPLSCPV 202
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG K + P +L G +CG +L+ + V++AAHC + ++V LGEH+
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHN- 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
+ E I R IRHP++S N +NDI L+++ + P LP
Sbjct: 55 IKVTEGSEQFISS-SRVIRHPNYSSYNIDNDIMLIKLSKPATLNT-YVQPVALPSSCAPA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN++ N L+ + +PILS +C ++ ITN M CAGY EG +
Sbjct: 113 GTMCTVSGWGNTMSSTA-DKNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGK 169
Query: 266 DSCQGDSGGPL 276
DSCQGDSGGP+
Sbjct: 170 DSCQGDSGGPV 180
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + V+GWG N L+ + +PILS +C ++ ITN M CAGY EG +D
Sbjct: 113 GTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGKD 170
Query: 68 SCQGDSGGPL 77
SCQGDSGGP+
Sbjct: 171 SCQGDSGGPV 180
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG K + P +L G +CG +L+ + V++AAHC + ++V LGEH+
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----TRVEVRLGEHN- 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
+ E I R IRHP++S N +NDI L+++ + P LP
Sbjct: 55 IKVTEGSEQFISS-SRVIRHPNYSSYNIDNDIMLIKLSKPATLNT-YVQPVALPSSCAPA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN++ N L+ + +PILS +C ++ ITN M CAGY EG +
Sbjct: 113 GTMCTVSGWGNTMSSTA-DKNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGK 169
Query: 266 DSCQGDSGGPL 276
DSCQGDSGGP+
Sbjct: 170 DSCQGDSGGPV 180
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + V+GWG N L+ + +PILS +C ++ ITN M CAGY EG +D
Sbjct: 113 GTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGKD 170
Query: 68 SCQGDSGGPL 77
SCQGDSGGP+
Sbjct: 171 SCQGDSGGPV 180
>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
pdb|3MYW|B Chain B, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 223
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH-- 158
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGEH
Sbjct: 1 IVGGYTCAANSVPYQVSL-NSGSHFCGGSLINSQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP---- 214
D L NE + I HP+F+ + +NDI L+++ S + ++ LP
Sbjct: 56 DVLEGNEQ----FINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNS-RVATVSLPRSCA 110
Query: 215 -----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEG 263
GN+ + L+ ++ P+LS+ CKSA +IT NM+C G+ EG
Sbjct: 111 AAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSA--YPGQITGNMICVGFLEG 168
Query: 264 KRDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 169 GKDSCQGDSGGPV 181
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 IVAGWGRLDERKPTANSLRK-VEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + SL + ++ P+LS+ CKSA +IT NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSA--YPGQITGNMICVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 96/194 (49%), Gaps = 26/194 (13%)
Query: 100 RIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGE 157
R+VGG V H +PW +L T+ G+ +CG TLI+ VLTAAHC+E P KV LG
Sbjct: 16 RVVGGCVAHPHSWPWQVSLRTRFGQHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 75
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPG-- 215
H ++ V I +V R P DIALL++ S ++ PACLP
Sbjct: 76 HQEVNLEPHVQEI--EVSRLFLEPT------RKDIALLKLSSPAVI-TDKVIPACLPSPN 126
Query: 216 -----------NSLDERKPT--ANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE 262
E + T A L++ ++P++ + C + R+ + LCAG+
Sbjct: 127 YMVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLA 186
Query: 263 GKRDSCQGDSGGPL 276
G DSCQGDSGGPL
Sbjct: 187 GGTDSCQGDSGGPL 200
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+ GWG + A L++ ++P++ + C + R+ + LCAG+ G DSCQG
Sbjct: 136 FITGWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 194
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 195 DSGGPL 200
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGD+GGP+
Sbjct: 170 KDSCQGDAGGPV 181
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GD+GGP+
Sbjct: 175 GDAGGPV 181
>pdb|1BUI|A Chain A, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
pdb|1BUI|B Chain B, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 250
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 101/207 (48%), Gaps = 31/207 (14%)
Query: 92 CG--QVERNQ---RIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIE- 144
CG QVE + R+VGG V H +PW +L T+ G +CG TLI+ VLTAAHC+E
Sbjct: 7 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 66
Query: 145 GVNPKEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFE 204
P KV LG H ++ V I +V R P DIALL++ S
Sbjct: 67 SPRPSSYKVILGAHQEVNLEPHVQEI--EVSRLFLEPT------RKDIALLKLSSPAVIT 118
Query: 205 APQIHPACLPG-------------NSLDERKPT--ANSLRKVEVPILSEEECKSAGYSAS 249
++ PACLP E + T A L++ ++P++ + C +
Sbjct: 119 D-KVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNG 177
Query: 250 RITNNMLCAGYAEGKRDSCQGDSGGPL 276
R+ + LCAG+ G DSCQGDSGGPL
Sbjct: 178 RVQSTELCAGHLAGGTDSCQGDSGGPL 204
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+ GWG + A L++ ++P++ + C + R+ + LCAG+ G DSCQG
Sbjct: 140 FITGWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 198
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 199 DSGGPL 204
>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex
pdb|3UIR|B Chain B, Crystal Structure Of The Plasmin-Textilinin-1 Complex
Length = 247
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 95/194 (48%), Gaps = 26/194 (13%)
Query: 100 RIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGE 157
R+VGG V H +PW +L T+ G +CG TLI+ VLTAAHC+E P KV LG
Sbjct: 17 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 76
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPG-- 215
H ++ V I +V R P DIALL++ S ++ PACLP
Sbjct: 77 HQEVNLEPHVQEI--EVSRLFLEPT------RKDIALLKLSSPAVI-TDKVIPACLPSPN 127
Query: 216 -----------NSLDERKPT--ANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE 262
E + T A L++ ++P++ + C + R+ + LCAG+
Sbjct: 128 YVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLA 187
Query: 263 GKRDSCQGDSGGPL 276
G DSCQGDSGGPL
Sbjct: 188 GGTDSCQGDSGGPL 201
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+ GWG + A L++ ++P++ + C + R+ + LCAG+ G DSCQG
Sbjct: 137 FITGWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 196 DSGGPL 201
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
Query: 89 VIACGQVERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNP 148
+I + +IVGG K + +L G +CG +L+ + V++AAHC +
Sbjct: 4 LIGAAFATEDDKIVGGYECKAYSQAHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK---- 58
Query: 149 KEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQI 208
++V LGEH+ + E I R IRHP++S N +NDI L+++ +
Sbjct: 59 SRVEVRLGEHN-IKVTEGSEQFISS-SRVIRHPNYSSYNIDNDIMLIKLSKPATLNT-YV 115
Query: 209 HPACLP---------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITN 253
P LP GN++ + N L+ + +PILS +C ++ ITN
Sbjct: 116 QPVALPTSCAPAGTMCTVSGWGNTMSSTADS-NKLQCLNIPILSYSDCNNS--YPGMITN 172
Query: 254 NMLCAGYAEGKRDSCQGDSGGPL 276
M CAGY EG +DSCQGDSGGP+
Sbjct: 173 AMFCAGYLEGGKDSCQGDSGGPV 195
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + V+GWG +N L+ + +PILS +C ++ ITN M CAGY EG +D
Sbjct: 128 GTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGKD 185
Query: 68 SCQGDSGGPL 77
SCQGDSGGP+
Sbjct: 186 SCQGDSGGPV 195
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 95/200 (47%), Gaps = 26/200 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 159
IVGG + E+PW A+L G CGATLI +++AAHC NP + G
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTI 60
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLD 219
+ SK + R ++R I H + + + DI+L E+ S V + +H CLP S
Sbjct: 61 KPSK------MKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTN-AVHRVCLPDASY- 112
Query: 220 ERKP-----------------TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE 262
E +P + N LR+ +V ++ C IT MLCAG E
Sbjct: 113 EFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLE 172
Query: 263 GKRDSCQGDSGGPLQIAVAR 282
GK D+CQGDSGGPL + AR
Sbjct: 173 GKTDACQGDSGGPLVSSDAR 192
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + V G+G L + N LR+ +V ++ C IT MLCAG EGK D
Sbjct: 117 GDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTD 176
Query: 68 SCQGDSGGPLQIAVAR 83
+CQGDSGGPL + AR
Sbjct: 177 ACQGDSGGPLVSSDAR 192
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 102/200 (51%), Gaps = 46/200 (23%)
Query: 113 PWIAALTK-KGKFYCGATLIAKRHVLTAAHCIEG--------------VNPKEIKVTLGE 157
PWIA L+ G+ +CG +L+ ++TAAHC+ ++P + K+ LG+
Sbjct: 13 PWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGK 72
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIH----PACL 213
H RL +E+ + VK HP + + F ND+AL+E+ E+P ++ P CL
Sbjct: 73 HWRLRSDENEQHL--GVKHTTLHPQYDPNTFENDVALVEL-----LESPVLNAFVMPICL 125
Query: 214 P---------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSA--SRITNNML 256
P G +R P +L ++E+PI+ C+ A Y+ ++T +M+
Sbjct: 126 PEGPQQEGAMVIVSGWGKQFLQRFP--ETLMEIEIPIVDHSTCQKA-YAPLKKKVTRDMI 182
Query: 257 CAGYAEGKRDSCQGDSGGPL 276
CAG EG +D+C GDSGGP+
Sbjct: 183 CAGEKEGGKDACAGDSGGPM 202
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 13/100 (13%)
Query: 8 GKIGIVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSA--SRITNNMLCAGYAEG 64
G + IV+GWG+ +R P +L ++E+PI+ C+ A Y+ ++T +M+CAG EG
Sbjct: 133 GAMVIVSGWGKQFLQRFP--ETLMEIEIPIVDHSTCQKA-YAPLKKKVTRDMICAGEKEG 189
Query: 65 KRDSCQGDSGGPLQIAVARPGKMEVIA-------CGQVER 97
+D+C GDSGGP+ G+ ++ CG+ +R
Sbjct: 190 GKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDR 229
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH-- 158
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGEH
Sbjct: 1 IVGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP---- 214
D L NE + I HP+F+ + +NDI L+++ S + ++ LP
Sbjct: 56 DVLEGNEQ----FINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNS-RVATVSLPRSCA 110
Query: 215 -----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEG 263
GN+ + L+ ++ P+LS+ CKS+ +IT NM+C G+ EG
Sbjct: 111 AAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQITGNMICVGFLEG 168
Query: 264 KRDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 169 GKDSCQGDSGGPV 181
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 IVAGWGRLDERKPTANSLRK-VEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + SL + ++ P+LS+ CKS+ +IT NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQITGNMICVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 107/213 (50%), Gaps = 46/213 (21%)
Query: 100 RIVGGNVTKLHEFPWIAALTK-KGKFYCGATLIAKRHVLTAAHCI--------------E 144
+I G + PWIA L+ G+ +CG +L+ ++TAAHC+ +
Sbjct: 155 QIFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPEDPTLRDSD 214
Query: 145 GVNPKEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFE 204
++P + K+ LG+H RL +E+ + VK HP + + F ND+AL+E+ E
Sbjct: 215 LLSPSDFKIILGKHWRLRSDENEQHL--GVKHTTLHPQYDPNTFENDVALVEL-----LE 267
Query: 205 APQIH----PACLP---------------GNSLDERKPTANSLRKVEVPILSEEECKSAG 245
+P ++ P CLP G +R P +L ++E+PI+ C+ A
Sbjct: 268 SPVLNAFVMPICLPEGPQQEGAMVIVSGWGKQFLQRFP--ETLMEIEIPIVDHSTCQKA- 324
Query: 246 YSA--SRITNNMLCAGYAEGKRDSCQGDSGGPL 276
Y+ ++T +M+CAG EG +D+C GDSGGP+
Sbjct: 325 YAPLKKKVTRDMICAGEKEGGKDACAGDSGGPM 357
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 13/100 (13%)
Query: 8 GKIGIVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSA--SRITNNMLCAGYAEG 64
G + IV+GWG+ +R P +L ++E+PI+ C+ A Y+ ++T +M+CAG EG
Sbjct: 288 GAMVIVSGWGKQFLQRFP--ETLMEIEIPIVDHSTCQKA-YAPLKKKVTRDMICAGEKEG 344
Query: 65 KRDSCQGDSGGPLQIAVARPGKMEVIA-------CGQVER 97
+D+C GDSGGP+ G+ ++ CG+ +R
Sbjct: 345 GKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDR 384
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGD GGP+
Sbjct: 170 KDSCQGDCGGPV 181
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GD GGP+
Sbjct: 175 GDCGGPV 181
>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|1TRM|B Chain B, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|2TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
Length = 223
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F NN+I L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKE-IKVTLGEHD 159
I GG+ ++PW ++T +G CG +L++++ VL+AAHC + KE +V LG H
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPG---- 215
S +E V +K I HP + DIALL++ + F I P LP
Sbjct: 61 LDSYSEDAKV--STLKDIIPHPSYLQEGSQGDIALLQLSRPITFSR-YIRPISLPAANAS 117
Query: 216 ---------NSLDERKP-----TANSLRKVEVPILSEEECKSAGYSASR------ITNNM 255
P T L+++EVP++S E C + ++ + +M
Sbjct: 118 FPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPEEPHFVQEDM 177
Query: 256 LCAGYAEGKRDSCQGDSGGPLQIAV 280
+CAGY EG +D+CQGDSGGPL V
Sbjct: 178 VCAGYVEGGKDACQGDSGGPLSCPV 202
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 13 VAGWGRLDERKP--TANSLRKVEVPILSEEECKSAGYSASR------ITNNMLCAGYAEG 64
V GWG + T L+++EVP++S E C + ++ + +M+CAGY EG
Sbjct: 126 VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPEEPHFVQEDMVCAGYVEG 185
Query: 65 KRDSCQGDSGGPLQIAV 81
+D+CQGDSGGPL V
Sbjct: 186 GKDACQGDSGGPLSCPV 202
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH-- 158
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGEH
Sbjct: 1 IVGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP---- 214
D L NE + I HP+F+ + +NDI L+++ S + ++ LP
Sbjct: 56 DVLEGNEQ----FINAAKIITHPNFNGNTLDNDIMLIKLSSPATLXS-RVATVSLPRSCA 110
Query: 215 -----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEG 263
GN+ + L+ ++ P+LS+ CKS+ +IT NM+C G+ EG
Sbjct: 111 AAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQITGNMICVGFLEG 168
Query: 264 KRDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 169 GKDSCQGDSGGPV 181
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 IVAGWGRLDERKPTANSLRK-VEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + SL + ++ P+LS+ CKS+ +IT NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQITGNMICVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant
Length = 229
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNKRRKNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA +IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 29/196 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGEHD 159
+VGG K +FPW L K +CG +++ ++ ++TAAHC+E GV +I V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGV---KITVVAGEHN 57
Query: 160 RLSKNESVPVIIRKVKRAIRHPDF--SLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
+ + E R V R I H +F +++ +N+DIALLE++ + + + P C+
Sbjct: 58 -IEETEHTEQK-RNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNS-YVTPICIADKE 114
Query: 218 LD------------------ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
+ +A L+ + VP++ C + + ITNNM CAG
Sbjct: 115 YTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTITNNMFCAG 172
Query: 260 YAEGKRDSCQGDSGGP 275
+ EG RDSCQGDSGGP
Sbjct: 173 FHEGGRDSCQGDSGGP 188
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 11 GIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
G V+GWGR+ + +A L+ + VP++ C + + ITNNM CAG+ EG RDSCQ
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTITNNMFCAGFHEGGRDSCQ 182
Query: 71 GDSGGP 76
GDSGGP
Sbjct: 183 GDSGGP 188
>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
pdb|2ZPR|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
Length = 222
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG K + P +L G +CG +L+ + V++AAHC + + V LGEH+
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----SRVAVRLGEHN- 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
+ E I R IRHP++S N +NDI L+++ + P LP
Sbjct: 55 IKVTEGSEQFISS-SRVIRHPNYSSYNIDNDIMLIKLSKPATLNT-YVQPVALPSSCAPA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN++ + L+ + +PILS +C ++ ITN M CAGY EG +
Sbjct: 113 GTMCTVSGWGNTMSSTA-DGDKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGK 169
Query: 266 DSCQGDSGGPL 276
DSCQGDSGGP+
Sbjct: 170 DSCQGDSGGPV 180
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + V+GWG + L+ + +PILS +C ++ ITN M CAGY EG +D
Sbjct: 113 GTMCTVSGWGNTMSSTADGDKLQCLNIPILSYSDCNNS--YPGMITNAMFCAGYLEGGKD 170
Query: 68 SCQGDSGGPL 77
SCQGDSGGP+
Sbjct: 171 SCQGDSGGPV 180
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI+++ V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCEENSLPYQVSL-NSGSHFCGGSLISEQWVVSAAHCYK----TRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA-------PQIHPA 211
L NE + IRHP ++ +NDI L+++ S A P PA
Sbjct: 56 KVLEGNEQ----FINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPA 111
Query: 212 ----CL---PGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
CL GN+L + L+ ++ P+L++ ECK++ +ITN+M C G+ EG
Sbjct: 112 AGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS--YPGKITNSMFCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQ D+GGP+
Sbjct: 170 KDSCQRDAGGPV 181
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L++ ECK++ +ITN+M C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS--YPGKITNSMFCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
D+GGP+
Sbjct: 175 RDAGGPV 181
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 100/207 (48%), Gaps = 40/207 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKF---YCGATLIAKRHVLTAAHCIEGVNPKEI---KVT 154
IVGG ++PW +L G + +CG +LI + VLTAAHC+ G + K++ +V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV-GPDVKDLAALRVQ 59
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
L E +++ +PV R I HP F + DIALLE+E V + +H LP
Sbjct: 60 LREQHLYYQDQLLPV-----SRIIVHPQFYTAQIGADIALLELEEPVKVSS-HVHTVTLP 113
Query: 215 GNSL------------------DERKPTANSLRKVEVPILSEEECKS-------AGYSAS 249
S DER P L++V+VPI+ C + G
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR 173
Query: 250 RITNNMLCAGYAEGKRDSCQGDSGGPL 276
+ ++MLCAG +RDSCQGDSGGPL
Sbjct: 174 IVRDDMLCAG--NTRRDSCQGDSGGPL 198
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 13 VAGWGRLD--ERKPTANSLRKVEVPILSEEECKS-------AGYSASRITNNMLCAGYAE 63
V GWG +D ER P L++V+VPI+ C + G + ++MLCAG
Sbjct: 127 VTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--N 184
Query: 64 GKRDSCQGDSGGPL 77
+RDSCQGDSGGPL
Sbjct: 185 TRRDSCQGDSGGPL 198
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 100/207 (48%), Gaps = 40/207 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKF---YCGATLIAKRHVLTAAHCIEGVNPKEI---KVT 154
IVGG ++PW +L G + +CG +LI + VLTAAHC+ G + K++ +V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV-GPDVKDLAALRVQ 59
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
L E +++ +PV R I HP F + DIALLE+E V + +H LP
Sbjct: 60 LREQHLYYQDQLLPV-----SRIIVHPQFYTAQIGADIALLELEEPVKVSS-HVHTVTLP 113
Query: 215 GNSL------------------DERKPTANSLRKVEVPILSEEECKS-------AGYSAS 249
S DER P L++V+VPI+ C + G
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR 173
Query: 250 RITNNMLCAGYAEGKRDSCQGDSGGPL 276
+ ++MLCAG +RDSCQGDSGGPL
Sbjct: 174 IVRDDMLCAG--NTRRDSCQGDSGGPL 198
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 13 VAGWGRLD--ERKPTANSLRKVEVPILSEEECKS-------AGYSASRITNNMLCAGYAE 63
V GWG +D ER P L++V+VPI+ C + G + ++MLCAG
Sbjct: 127 VTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--N 184
Query: 64 GKRDSCQGDSGGPL 77
+RDSCQGDSGGPL
Sbjct: 185 TRRDSCQGDSGGPL 198
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI+++ V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCEENSLPYQVSL-NSGYHFCGGSLISEQWVVSAAHCYK----TRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA-------PQIHPA 211
L NE + IRHP ++ +NDI L+++ S A P PA
Sbjct: 56 KVLEGNEQ----FINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPA 111
Query: 212 ----CL---PGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
CL GN+L + L+ ++ P+L++ ECK++ +ITN+M C G+ EG
Sbjct: 112 AGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS--YPGKITNSMFCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQ D+GGP+
Sbjct: 170 KDSCQRDAGGPV 181
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L++ ECK++ +ITN+M C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS--YPGKITNSMFCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
D+GGP+
Sbjct: 175 RDAGGPV 181
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 100/207 (48%), Gaps = 40/207 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFY---CGATLIAKRHVLTAAHCIEGVNPKEI---KVT 154
IVGG ++PW +L G ++ CG +LI + VLTAAHC+ G + K++ +V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV-GPDVKDLAALRVQ 59
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
L E +++ +PV R I HP F + DIALLE+E V + +H LP
Sbjct: 60 LREQHLYYQDQLLPV-----SRIIVHPQFYTAQIGADIALLELEEPVKVSS-HVHTVTLP 113
Query: 215 GNSL------------------DERKPTANSLRKVEVPILSEEECKS-------AGYSAS 249
S DER P L++V+VPI+ C + G
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR 173
Query: 250 RITNNMLCAGYAEGKRDSCQGDSGGPL 276
+ ++MLCAG +RDSCQGDSGGPL
Sbjct: 174 IVRDDMLCAG--NTRRDSCQGDSGGPL 198
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 13 VAGWGRLD--ERKPTANSLRKVEVPILSEEECKS-------AGYSASRITNNMLCAGYAE 63
V GWG +D ER P L++V+VPI+ C + G + ++MLCAG
Sbjct: 127 VTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--N 184
Query: 64 GKRDSCQGDSGGPL 77
+RDSCQGDSGGPL
Sbjct: 185 TRRDSCQGDSGGPL 198
>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin
Length = 223
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 105/206 (50%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCXK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA +IT+NM CAG EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGXLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAG EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGXLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
G++L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 101/207 (48%), Gaps = 31/207 (14%)
Query: 92 CG--QVERNQ---RIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIE- 144
CG QVE + R+VGG V H +PW +L T+ G +CG TLI+ VLTAAHC+E
Sbjct: 7 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 66
Query: 145 GVNPKEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFE 204
P KV LG H ++ V I +V R P DIALL++ S
Sbjct: 67 SPRPSSYKVILGAHQEVNLEPHVQEI--EVSRLFLEPT------RKDIALLKLSSPAVIT 118
Query: 205 APQIHPACLPG-------------NSLDERKPT--ANSLRKVEVPILSEEECKSAGYSAS 249
++ PACLP E + T A L++ ++P++ + C +
Sbjct: 119 D-KVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNG 177
Query: 250 RITNNMLCAGYAEGKRDSCQGDSGGPL 276
R+ + LCAG+ G DSCQGD+GGPL
Sbjct: 178 RVQSTELCAGHLAGGTDSCQGDAGGPL 204
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+ GWG + A L++ ++P++ + C + R+ + LCAG+ G DSCQG
Sbjct: 140 FITGWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 198
Query: 72 DSGGPL 77
D+GGPL
Sbjct: 199 DAGGPL 204
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 29/196 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGEHD 159
+VGG K +FPW L K +CG +++ ++ ++TAAHC+E GV +I V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGV---KITVVAGEHN 57
Query: 160 RLSKNESVPVIIRKVKRAIRHPDF--SLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
+ + E R V R I H +F +++ +N+DIALLE++ + + + P C+
Sbjct: 58 -IEETEHTEQK-RNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNS-YVTPICIADKE 114
Query: 218 LD------------------ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
+ A L+ + VP++ C + + ITNNM CAG
Sbjct: 115 YTNIFLKFGSGYVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRS--TKFTITNNMFCAG 172
Query: 260 YAEGKRDSCQGDSGGP 275
+ EG RDSCQGDSGGP
Sbjct: 173 FHEGGRDSCQGDSGGP 188
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 11 GIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
G V+GWGR+ + A L+ + VP++ C + + ITNNM CAG+ EG RDSCQ
Sbjct: 125 GYVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRS--TKFTITNNMFCAGFHEGGRDSCQ 182
Query: 71 GDSGGP 76
GDSGGP
Sbjct: 183 GDSGGP 188
>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha
Domain Complex
Length = 249
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 101/207 (48%), Gaps = 31/207 (14%)
Query: 92 CG--QVERNQ---RIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIE- 144
CG QVE + R+VGG V H +PW +L T+ G +CG TLI+ VLTAAHC+E
Sbjct: 6 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 65
Query: 145 GVNPKEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFE 204
P KV LG H ++ V I +V R P DIALL++ S
Sbjct: 66 SPRPSSYKVILGAHQEVNLEPHVQEI--EVSRLFLEPT------RKDIALLKLSSPAVIT 117
Query: 205 APQIHPACLPG-------------NSLDERKPT--ANSLRKVEVPILSEEECKSAGYSAS 249
++ PACLP E + T A L++ ++P++ + C +
Sbjct: 118 D-KVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNG 176
Query: 250 RITNNMLCAGYAEGKRDSCQGDSGGPL 276
R+ + LCAG+ G DSCQGD+GGPL
Sbjct: 177 RVQSTELCAGHLAGGTDSCQGDAGGPL 203
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+ GWG + A L++ ++P++ + C + R+ + LCAG+ G DSCQG
Sbjct: 139 FITGWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 197
Query: 72 DSGGPL 77
D+GGPL
Sbjct: 198 DAGGPL 203
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+ SCQGDSGGP+
Sbjct: 170 KSSCQGDSGGPV 181
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG + SCQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKSSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen
With Alpha Domain Of Streptokinase In The Presence
Cadmium Ions
Length = 248
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 95/194 (48%), Gaps = 26/194 (13%)
Query: 100 RIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGE 157
R+VGG V H +PW +L T+ G +CG TLI+ VLTAAHC+E P KV LG
Sbjct: 18 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 77
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPG-- 215
H ++ V I +V R P DIALL++ S ++ PACLP
Sbjct: 78 HQEVNLEPHVQEI--EVSRLFLEPT------RKDIALLKLSSPAVITD-KVIPACLPSPN 128
Query: 216 -----------NSLDERKPT--ANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE 262
E + T A L++ ++P++ + C + R+ + LCAG+
Sbjct: 129 YVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLA 188
Query: 263 GKRDSCQGDSGGPL 276
G DSCQGD+GGPL
Sbjct: 189 GGTDSCQGDAGGPL 202
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+ GWG + A L++ ++P++ + C + R+ + LCAG+ G DSCQG
Sbjct: 138 FITGWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 196
Query: 72 DSGGPL 77
D+GGPL
Sbjct: 197 DAGGPL 202
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 100/199 (50%), Gaps = 27/199 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFY-CGATLIAKRHVLTAAHC------IEGVNPKEIKV 153
+VGG E+PW +L G+ + CGA+LI+ +++AAHC +P +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 154 TLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACL 213
LG HD+ S+ + V R++KR I HP F+ F+ DIALLE+E ++ + + P CL
Sbjct: 61 FLGLHDQ-SQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSS-MVRPICL 118
Query: 214 PGNS----------------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLC 257
P S A L+K E+ ++ + C++ +IT M+C
Sbjct: 119 PDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVIQQTTCEN--LLPQQITPRMMC 176
Query: 258 AGYAEGKRDSCQGDSGGPL 276
G+ G DSCQGDSGGPL
Sbjct: 177 VGFLSGGVDSCQGDSGGPL 195
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
GK V GWG A L+K E+ ++ + C++ +IT M+C G+ G D
Sbjct: 128 GKAIWVTGWGHTQYGGTGALILQKGEIRVIQQTTCEN--LLPQQITPRMMCVGFLSGGVD 185
Query: 68 SCQGDSGGPL 77
SCQGDSGGPL
Sbjct: 186 SCQGDSGGPL 195
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 27/199 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFY-CGATLIAKRHVLTAAHC------IEGVNPKEIKV 153
+VGG E+PW +L G+ + CGA+LI+ +++AAHC +P +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 154 TLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACL 213
LG HD+ S+ + V R++KR I HP F+ F+ DIALLE+E ++ + + P CL
Sbjct: 61 FLGLHDQ-SQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSS-MVRPICL 118
Query: 214 PGNS----------------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLC 257
P S A L+K E+ ++++ C++ +IT M+C
Sbjct: 119 PDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCEN--LLPQQITPRMMC 176
Query: 258 AGYAEGKRDSCQGDSGGPL 276
G+ G DSCQGDSGGPL
Sbjct: 177 VGFLSGGVDSCQGDSGGPL 195
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
GK V GWG A L+K E+ ++++ C++ +IT M+C G+ G D
Sbjct: 128 GKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCEN--LLPQQITPRMMCVGFLSGGVD 185
Query: 68 SCQGDSGGPL 77
SCQGDSGGPL
Sbjct: 186 SCQGDSGGPL 195
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 95/194 (48%), Gaps = 26/194 (13%)
Query: 100 RIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGE 157
R+VGG V H +PW +L T+ G +CG TLI+ VLTAAHC+E P KV LG
Sbjct: 17 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 76
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPG-- 215
H ++ V I +V R P DIALL++ S ++ PACLP
Sbjct: 77 HQEVNLEPHVQEI--EVSRLFLEPT------RKDIALLKLSSPAVI-TDKVIPACLPSPN 127
Query: 216 -----------NSLDERKPT--ANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE 262
E + T A L++ ++P++ + C + R+ + LCAG+
Sbjct: 128 YVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLA 187
Query: 263 GKRDSCQGDSGGPL 276
G DSCQGD+GGPL
Sbjct: 188 GGTDSCQGDAGGPL 201
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+ GWG + A L++ ++P++ + C + R+ + LCAG+ G DSCQG
Sbjct: 137 FITGWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195
Query: 72 DSGGPL 77
D+GGPL
Sbjct: 196 DAGGPL 201
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATIALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
G++L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 110/239 (46%), Gaps = 43/239 (17%)
Query: 71 GDSGGPLQIAVARPGKM----EVIACG---------QVERNQ---RIVGGNVTKLHEFPW 114
GD GGP P K+ +V C QVE + R+VGG V H +PW
Sbjct: 517 GDVGGPW-CYTTNPRKLYDYCDVPQCAAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPW 575
Query: 115 IAAL-TKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGEHDRLSKNESVPVIIR 172
+L T+ G +CG TLI+ VLTAAHC+E P KV LG H ++ V I
Sbjct: 576 QVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEI-- 633
Query: 173 KVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPG-------------NSLD 219
+V R P DIALL++ S ++ PACLP
Sbjct: 634 EVSRLFLEPT------RKDIALLKLSSPAVITD-KVIPACLPSPNYVVADRTECFITGWG 686
Query: 220 ERKPT--ANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
E + T A L++ ++P++ + C + R+ + LCAG+ G DSCQGDSGGPL
Sbjct: 687 ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPL 745
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+ GWG + A L++ ++P++ + C + R+ + LCAG+ G DSCQG
Sbjct: 681 FITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 739
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 740 DSGGPL 745
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 56 NVLEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+ SCQGDSGGP+
Sbjct: 170 KGSCQGDSGGPV 181
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG + SCQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKGSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 29/193 (15%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH-- 158
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGEH
Sbjct: 1 IVGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP---- 214
D L NE + I HP+F+ + +NDI L+++ S + ++ LP
Sbjct: 56 DVLEGNEQ----FINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNS-RVATVSLPRSCA 110
Query: 215 -----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEG 263
GN+ + L+ ++ P+LS CKS+ +IT NM+C G+ +G
Sbjct: 111 AAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSS--YPGQITGNMICVGFLQG 168
Query: 264 KRDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 169 GKDSCQGDSGGPV 181
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 12 IVAGWGRLDERKPTANSLRK-VEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + SL + ++ P+LS CKS+ +IT NM+C G+ +G +DSCQ
Sbjct: 117 LISGWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSS--YPGQITGNMICVGFLQGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 29/196 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGEHD 159
+VGG K +FPW L K +CG +++ ++ ++TAAHC+E GV +I V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGV---KITVVAGEHN 57
Query: 160 RLSKNESVPVIIRKVKRAIRHPDF--SLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
+ + E R V R I H ++ +++ +N+DIALLE++ + + + P C+
Sbjct: 58 -IEETEHTEQK-RNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNS-YVTPICIADKE 114
Query: 218 LD------------------ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
+ +A L+ + VP++ C + + ITNNM CAG
Sbjct: 115 YTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTITNNMFCAG 172
Query: 260 YAEGKRDSCQGDSGGP 275
+ EG RDSCQGDSGGP
Sbjct: 173 FHEGGRDSCQGDSGGP 188
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 11 GIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
G V+GWGR+ + +A L+ + VP++ C + + ITNNM CAG+ EG RDSCQ
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTITNNMFCAGFHEGGRDSCQ 182
Query: 71 GDSGGP 76
GDSGGP
Sbjct: 183 GDSGGP 188
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 29/192 (15%)
Query: 102 VGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH--D 159
VGG + P+ +L G +CG +LI + V++AAHC + I+V LGEH D
Sbjct: 2 VGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCYK----SRIQVRLGEHNID 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP----- 214
L NE + I HP+F+ + +NDI L+++ S + ++ LP
Sbjct: 57 VLEGNEQ----FINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNS-RVATVSLPRSCAA 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+ + L+ ++ P+LS+ CKS+ +IT NM+C G+ EG
Sbjct: 112 AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQITGNMICVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 IVAGWGRLDERKPTANSLRK-VEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + SL + ++ P+LS+ CKS+ +IT NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQITGNMICVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|D Chain D, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZU|C Chain C, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|D Chain D, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 223
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP 214
L +E + I+HP+F NN+I L+++ S V A + +C P
Sbjct: 56 NVLEGDEQ----FVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAP 111
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG
Sbjct: 112 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 117 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 174
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 175 GDSGGPV 181
>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human
Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With
Vacant Active Site
Length = 238
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 34/202 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + H PW AAL F CG L+ ++ VLTAAHCI ++ LG H+
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCIS----DNYQLWLGRHNL 56
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLS-----------NFNNDIALLEMESGVD------- 202
+ + V + HP F++S ++++D+ LL + D
Sbjct: 57 FDDENTAQFV--HVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVK 114
Query: 203 -----FEAPQIHPACLP---GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNN 254
E P++ CL G+ E + L+ V++ IL +ECK A ++T+
Sbjct: 115 VVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKA--HVQKVTDF 172
Query: 255 MLCAGYAEGKRDSCQGDSGGPL 276
MLC G+ EG +D+C GDSGGPL
Sbjct: 173 MLCVGHLEGGKDTCVGDSGGPL 194
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 8 GKIGIVAGWGRLD-ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G + +GWG ++ E + L+ V++ IL +ECK A ++T+ MLC G+ EG +
Sbjct: 126 GSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKA--HVQKVTDFMLCVGHLEGGK 183
Query: 67 DSCQGDSGGPL 77
D+C GDSGGPL
Sbjct: 184 DTCVGDSGGPL 194
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 27/190 (14%)
Query: 103 GGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD--R 160
GG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 11 GGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNINV 65
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP-- 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 66 LEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAG 121
Query: 215 --------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 266
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +D
Sbjct: 122 TQCLISGWGNTLSSGVNEPDLLKCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKD 179
Query: 267 SCQGDSGGPL 276
SCQGDSGGP+
Sbjct: 180 SCQGDSGGPV 189
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 125 LISGWGNTLSSGVNEPDLLKCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 182
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 183 GDSGGPV 189
>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With
Benzamidine
Length = 220
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG H +L G +CG +L++K V++AAHC + V ++V LGEH
Sbjct: 1 IVGGYECTKHSQAHQVSL-NSGYHFCGGSLVSKDWVVSAAHCYKSV----LRVRLGEH-H 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
+ NE I IRHP++S N NNDI L+++ +H LP
Sbjct: 55 IRVNEGTEQYISS-SSVIRHPNYSSYNINNDIMLIKLTKPATLN-QYVHAVALPTECAAD 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN++ + L+ + +PILS +C ++ IT +M CAGY EG +
Sbjct: 113 ATMCTVSGWGNTMSSVAD-GDKLQCLSLPILSHADCANS--YPGMITQSMFCAGYLEGGK 169
Query: 266 DSCQGDSGGPL 276
DSCQGDSGGP+
Sbjct: 170 DSCQGDSGGPV 180
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V+GWG + L+ + +PILS +C ++ IT +M CAGY EG +DSCQGD
Sbjct: 118 VSGWGNTMSSVADGDKLQCLSLPILSHADCANS--YPGMITQSMFCAGYLEGGKDSCQGD 175
Query: 73 SGGPL 77
SGGP+
Sbjct: 176 SGGPV 180
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 27/190 (14%)
Query: 103 GGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD--R 160
GG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 11 GGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNINV 65
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP-- 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 66 LEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAG 121
Query: 215 --------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 266
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +D
Sbjct: 122 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKD 179
Query: 267 SCQGDSGGPL 276
SCQGDSGGP+
Sbjct: 180 SCQGDSGGPV 189
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 125 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 182
Query: 71 GDSGGPL 77
GDSGGP+
Sbjct: 183 GDSGGPV 189
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 38/208 (18%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R + ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTAYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP--------------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
CLP GN + +P+ L+ V +PI+ CK + + RI
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETGQPSV--LQVVNLPIVERPVCKDS--TRIRI 174
Query: 252 TNNMLCAGYA--EGKR-DSCQGDSGGPL 276
T+NM CAGY EGKR D+C+GDSGGP
Sbjct: 175 TDNMFCAGYKPDEGKRGDACEGDSGGPF 202
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 14/99 (14%)
Query: 3 EANYTGKIGIVAGWGRLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 61
+A Y G+ V GWG L E +P+ L+ V +PI+ CK + + RIT+NM CAGY
Sbjct: 131 QAGYKGR---VTGWGNLKETGQPSV--LQVVNLPIVERPVCKDS--TRIRITDNMFCAGY 183
Query: 62 A--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 184 KPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 222
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 38/208 (18%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP--------------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
CLP GN ++ +P+ L+ V +PI+ CK + + RI
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKEKGQPSV--LQVVNLPIVERPVCKDS--TRIRI 174
Query: 252 TNNMLCAGYA--EGKR-DSCQGDSGGPL 276
T+NM CAGY EGKR D+C+GDSGGP
Sbjct: 175 TDNMFCAGYKPDEGKRGDACEGDSGGPF 202
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 12/98 (12%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 62
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM CAGY
Sbjct: 131 QAGYKGR---VTGWGNLKE-KGQPSVLQVVNLPIVERPVCKDS--TRIRITDNMFCAGYK 184
Query: 63 --EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 PDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 222
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI ++ V++A HC + I+V LGEH+
Sbjct: 1 IVGGYNCEENSVPYQVSL-NSGYHFCGGSLINEQWVVSAGHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA-------PQIHPA 211
L NE + IRHP + NNDI L+++ S A P PA
Sbjct: 56 EVLEGNEQ----FINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAPPA 111
Query: 212 ----CL---PGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
CL GN+ + L+ ++ P+LS+ +C+++ +IT+NM C G+ EG
Sbjct: 112 TGTKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCEAS--YPGKITSNMFCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 7 TGKIGIVAGWGRL-DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 65
TG +++GWG + L+ ++ P+LS+ +C+++ +IT+NM C G+ EG
Sbjct: 112 TGTKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCEAS--YPGKITSNMFCVGFLEGG 169
Query: 66 RDSCQGDSGGPL 77
+DSCQGDSGGP+
Sbjct: 170 KDSCQGDSGGPV 181
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 107/208 (51%), Gaps = 38/208 (18%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP--------------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
CLP GN + +P+ L+ V +PI+ CK + + RI
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETGQPSV--LQVVNLPIVERPVCKDS--TRIRI 174
Query: 252 TNNMLCAGYA--EGKR-DSCQGDSGGPL 276
T+NM CAGY EGKR D+C+GDSGGP
Sbjct: 175 TDNMFCAGYKPDEGKRGDACEGDSGGPF 202
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 20/139 (14%)
Query: 3 EANYTGKIGIVAGWGRLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 61
+A Y G+ V GWG L E +P+ L+ V +PI+ CK + + RIT+NM CAGY
Sbjct: 131 QAGYKGR---VTGWGNLKETGQPSV--LQVVNLPIVERPVCKDS--TRIRITDNMFCAGY 183
Query: 62 A--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ-VERNQRIVGGNVTKLHEF-P 113
EGKR D+C+GDSGGP + R +M +++ G+ +R+ + G T +
Sbjct: 184 KPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKY--GFYTHVFRLKK 241
Query: 114 WIAALTKKGKFYCGATLIA 132
WI + +F C + LI
Sbjct: 242 WIQKVID--QFGCSSVLIV 258
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 35/207 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP-------------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRIT 252
CLP +L E + L+ V +PI+ CK + + RIT
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWGQPSVLQVVNLPIVERPVCKDS--TRIRIT 176
Query: 253 NNMLCAGYA--EGKR-DSCQGDSGGPL 276
+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 DNMFCAGYKPDEGKRGDACEGDSGGPF 203
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 62
+A Y G+ V GWG L E + L+ V +PI+ CK + + RIT+NM CAGY
Sbjct: 131 QAGYKGR---VTGWGNLKETWGQPSVLQVVNLPIVERPVCKDS--TRIRITDNMFCAGYK 185
Query: 63 --EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 186 PDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 223
>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
Length = 245
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 40/207 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKF---YCGATLIAKRHVLTAAHCIEGVNPKEI---KVT 154
IVGG ++PW +L + ++ +CG +LI + VLTAAHC+ G + K++ +V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV-GPDVKDLATLRVQ 59
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
L E +++ +PV R I HP F + DIALLE+E V+ + ++H LP
Sbjct: 60 LREQHLYYQDQLLPV-----SRIIVHPQFYIIQTGADIALLELEEPVNISS-RVHTVMLP 113
Query: 215 GNSL------------------DERKPTANSLRKVEVPILSEEECKS-------AGYSAS 249
S DE P L++V+VPI+ C + G
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR 173
Query: 250 RITNNMLCAGYAEGKRDSCQGDSGGPL 276
I ++MLCAG +RDSCQGDSGGPL
Sbjct: 174 IIRDDMLCAG--NSQRDSCQGDSGGPL 198
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 13 VAGWGRLD--ERKPTANSLRKVEVPILSEEECKS-------AGYSASRITNNMLCAGYAE 63
V GWG +D E P L++V+VPI+ C + G I ++MLCAG
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--N 184
Query: 64 GKRDSCQGDSGGPL 77
+RDSCQGDSGGPL
Sbjct: 185 SQRDSCQGDSGGPL 198
>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant
Length = 247
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 93/193 (48%), Gaps = 26/193 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGEH 158
+VGG V H +PW +L T+ G +CG TLI+ VLTAAHC+E P KV LG H
Sbjct: 18 VVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAH 77
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPG--- 215
++ V I +V R P DIALL++ S ++ PACLP
Sbjct: 78 QEVNLEPHVQEI--EVSRLFLEPT------RKDIALLKLSSPAVI-TDKVIPACLPSPNY 128
Query: 216 ----------NSLDERKPT--ANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEG 263
E + T A L + ++P++ + C + R+ + LCAG+ G
Sbjct: 129 VVADRTECFITGWGETQGTFGAGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAG 188
Query: 264 KRDSCQGDSGGPL 276
DSCQGDSGGPL
Sbjct: 189 GTDSCQGDSGGPL 201
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+ GWG + A L + ++P++ + C + R+ + LCAG+ G DSCQG
Sbjct: 137 FITGWGE-TQGTFGAGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 196 DSGGPL 201
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG K + +L G +CG +L+ + V++AAHC + ++V LGEH+
Sbjct: 1 IVGGYECKAYSQAHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHN- 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
+ E I R IRHP++S N +NDI L+++ + P LP
Sbjct: 55 IKVTEGSEQFISS-SRVIRHPNYSSYNIDNDIMLIKLSKPATLNT-YVQPVALPTSCAPA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN++ ++ L+ + +PILS +C + ITN M CAGY EG +
Sbjct: 113 GTMCTVSGWGNTMSSTA-DSDKLQCLNIPILSYSDCNDS--YPGMITNAMFCAGYLEGGK 169
Query: 266 DSCQGDSGGPL 276
DSCQGDSGGP+
Sbjct: 170 DSCQGDSGGPV 180
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + V+GWG ++ L+ + +PILS +C + ITN M CAGY EG +D
Sbjct: 113 GTMCTVSGWGNTMSSTADSDKLQCLNIPILSYSDCNDS--YPGMITNAMFCAGYLEGGKD 170
Query: 68 SCQGDSGGPL 77
SCQGDSGGP+
Sbjct: 171 SCQGDSGGPV 180
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 111/236 (47%), Gaps = 41/236 (17%)
Query: 91 ACGQ----VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCI--- 143
CG+ VE+ QRI+GG K+ FPW G+ G L+ R +LTAAH +
Sbjct: 76 VCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTLYPK 133
Query: 144 --EGVNPKEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLS---NFNNDIALLEME 198
E + + V LG + E + + ++R HPD+ NF DIALLE+E
Sbjct: 134 EHEAQSNASLDVFLGH---TNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELE 190
Query: 199 SGVDFEAPQIHPACLPGNS----------------LDERKPTANSLRKVEVPILSEEECK 242
+ V P + P CLP N ++E+ A+ LR V +P+ + + C+
Sbjct: 191 NSVTL-GPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQACE 247
Query: 243 SAGYSASRI---TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
+ +R+ + NM CAG+ K+D+CQGDSGG AV P + +VS
Sbjct: 248 NWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVF--AVRDPNTDRWVATGIVS 301
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 7/91 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRI---TNNMLCAGYAEG 64
G +G V+G+G ++E+ A+ LR V +P+ + + C++ +R+ + NM CAG+
Sbjct: 214 GLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 271
Query: 65 KRDSCQGDSGGPLQIAVARPGKMEVIACGQV 95
K+D+CQGDSGG AV P +A G V
Sbjct: 272 KQDACQGDSGGVF--AVRDPNTDRWVATGIV 300
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
IVGG + + P+ +L G +CG +LI ++ V++A HC + I+V LGEH+
Sbjct: 1 IVGGYNCEENSVPYQVSL-NSGYHFCGGSLINEQWVVSAGHCYK----SRIQVRLGEHNI 55
Query: 160 -RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA-------PQIHPA 211
L NE + IRHP + NNDI L+++ S A P PA
Sbjct: 56 EVLEGNEQ----FINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLPTAPPA 111
Query: 212 ----CL---PGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
CL GN+ + L+ ++ P+LS+ +C+++ +IT+NM C G+ EG
Sbjct: 112 TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS--YPGKITSNMFCVGFLEGG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGD+GGP+
Sbjct: 170 KDSCQGDAGGPV 181
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 7 TGKIGIVAGWGRL-DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 65
TG +++GWG + L+ ++ P+LS+ +C+++ +IT+NM C G+ EG
Sbjct: 112 TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS--YPGKITSNMFCVGFLEGG 169
Query: 66 RDSCQGDSGGPL 77
+DSCQGD+GGP+
Sbjct: 170 KDSCQGDAGGPV 181
>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 240
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 37/204 (18%)
Query: 101 IVGGNVTKLHEFPW-IAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
++ G +T+ + PW + L K K CGA LI VLTAAHC++ K++ V LGE+D
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMD--ESKKLLVRLGEYD 58
Query: 160 --RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
R K E + +K HP++S S +NDIALL + + I P CLP +
Sbjct: 59 LRRWEKWE----LDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATL-SQTIVPICLPDSG 113
Query: 218 LDER-------------------------KPTANSLRKVEVPILSEEECKSAGYSASRIT 252
L ER + L +++P++ EC ++ ++
Sbjct: 114 LAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV--MSNMVS 171
Query: 253 NNMLCAGYAEGKRDSCQGDSGGPL 276
NMLCAG ++D+C+GDSGGP+
Sbjct: 172 ENMLCAGILGDRQDACEGDSGGPM 195
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-----LRKVEVPILSEEECKSAGYSASRITNNML 57
E N G+ +V GWG R+ A L +++P++ EC ++ ++ NML
Sbjct: 118 ELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV--MSNMVSENML 175
Query: 58 CAGYAEGKRDSCQGDSGGPL 77
CAG ++D+C+GDSGGP+
Sbjct: 176 CAGILGDRQDACEGDSGGPM 195
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 31/197 (15%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGEHD 159
IVGG K +FPW L K +CG ++I ++ V+TAAHCIE GV +I V GE++
Sbjct: 1 IVGGENAKPGQFPWQVLLNGKIDAFCGGSIINEKWVVTAAHCIEPGV---KITVVAGEYN 57
Query: 160 RLSKNESVPVIIRK-VKRAIRHPDF--SLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
E+ P R+ V RAI H + +++ +++DIALLE++ + + + P C+
Sbjct: 58 ---TEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNS-YVTPICIADK 113
Query: 217 SLD------------------ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
R +A L+ ++VP++ C + + I +NM CA
Sbjct: 114 EYTNIFLKFGSGYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRS--TKFTIYSNMFCA 171
Query: 259 GYAEGKRDSCQGDSGGP 275
G+ EG +DSCQGDSGGP
Sbjct: 172 GFHEGGKDSCQGDSGGP 188
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 11 GIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
G V+GWGR+ R +A L+ ++VP++ C + + I +NM CAG+ EG +DSCQ
Sbjct: 125 GYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRS--TKFTIYSNMFCAGFHEGGKDSCQ 182
Query: 71 GDSGGP 76
GDSGGP
Sbjct: 183 GDSGGP 188
>pdb|1AUT|C Chain C, Human Activated Protein C
Length = 250
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 37/204 (18%)
Query: 101 IVGGNVTKLHEFPW-IAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
++ G +T+ + PW + L K K CGA LI VLTAAHC++ K++ V LGE+D
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMD--ESKKLLVRLGEYD 58
Query: 160 --RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
R K E + +K HP++S S +NDIALL + + I P CLP +
Sbjct: 59 LRRWEKWE----LDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATL-SQTIVPICLPDSG 113
Query: 218 LDER-------------------------KPTANSLRKVEVPILSEEECKSAGYSASRIT 252
L ER + L +++P++ EC ++ ++
Sbjct: 114 LAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV--MSNMVS 171
Query: 253 NNMLCAGYAEGKRDSCQGDSGGPL 276
NMLCAG ++D+C+GDSGGP+
Sbjct: 172 ENMLCAGILGDRQDACEGDSGGPM 195
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-----LRKVEVPILSEEECKSAGYSASRITNNML 57
E N G+ +V GWG R+ A L +++P++ EC ++ ++ NML
Sbjct: 118 ELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV--MSNMVSENML 175
Query: 58 CAGYAEGKRDSCQGDSGGPL 77
CAG ++D+C+GDSGGP+
Sbjct: 176 CAGILGDRQDACEGDSGGPM 195
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 29/196 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGEHD 159
+VGG K +FPW L K +CG +++ ++ ++TAAHC+E GV +I V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGV---KITVVAGEHN 57
Query: 160 RLSKNESVPVIIRKVKRAIRHPDF--SLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
+ + E R V R I H ++ +++ +N+DIALLE++ + + + P C+
Sbjct: 58 -IEETEHTEQK-RNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNS-YVTPICIADKE 114
Query: 218 LD------------------ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
+ +A L+ + VP++ C + + I NNM CAG
Sbjct: 115 YTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTIYNNMFCAG 172
Query: 260 YAEGKRDSCQGDSGGP 275
+ EG RDSCQGDSGGP
Sbjct: 173 FHEGGRDSCQGDSGGP 188
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 11 GIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
G V+GWGR+ + +A L+ + VP++ C + + I NNM CAG+ EG RDSCQ
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTIYNNMFCAGFHEGGRDSCQ 182
Query: 71 GDSGGP 76
GDSGGP
Sbjct: 183 GDSGGP 188
>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity
Length = 228
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 29/196 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GG + H P++A++ G CG L+A++ VL+AAHC+E +++V LG H
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHS- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLDE 220
LS+ E + V RA+ HPD+ ++D+ LL++ P + P LP +D
Sbjct: 60 LSQPEPSKRLY-DVLRAVPHPDYQPDTIDHDLLLLQLSEKATL-GPAVRP--LPWQRVDR 115
Query: 221 --------------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R+P +SL+ V +P+L C + IT ++CA
Sbjct: 116 DVAPGTLCDVAGWGIVNHAGRRP--DSLQHVLLPVLDRATCNRRTHHDGAITERLMCA-- 171
Query: 261 AEGKRDSCQGDSGGPL 276
+RDSC+GDSGGPL
Sbjct: 172 ESNRRDSCKGDSGGPL 187
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + VAGWG ++ +SL+ V +P+L C + IT ++CA +RD
Sbjct: 120 GTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA--ESNRRD 177
Query: 68 SCQGDSGGPL 77
SC+GDSGGPL
Sbjct: 178 SCKGDSGGPL 187
>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight
Into Structural Radiation Damage
Length = 223
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA +IT+NM CA EGK
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAYGLEGKG 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CA EGK DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAYGLEGKGDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVI 90
GDSGGP V GK++ I
Sbjct: 175 GDSGGP----VVCSGKLQGI 190
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 27/190 (14%)
Query: 103 GGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD--R 160
GG + + P+ +L G +CG +LI + V++AAHC + I+V LGEH+
Sbjct: 11 GGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNINV 65
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA----PQIHPACLP-- 214
L NE + I+HP+F NNDI L+++ S V A + +C P
Sbjct: 66 LEGNEQ----FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAG 121
Query: 215 --------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 266
GN+L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +D
Sbjct: 122 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKD 179
Query: 267 SCQGDSGGPL 276
SCQG+SGGP+
Sbjct: 180 SCQGNSGGPV 189
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 12 IVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG L + L+ ++ P+L + +C+++ +IT+NM+C G+ EG +DSCQ
Sbjct: 125 LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKITDNMVCVGFLEGGKDSCQ 182
Query: 71 GDSGGPL 77
G+SGGP+
Sbjct: 183 GNSGGPV 189
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 39/225 (17%)
Query: 86 KMEVIACGQVERNQRIVGGNVTKLHEFPWIAALTKK----GKFYCGATLIAKRHVLTAAH 141
K E CG +QR+ G KL PW+A L + +F CG +I++R++LTAAH
Sbjct: 105 KDENFDCGNF-LSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAH 163
Query: 142 CIEGVNPKEIKVTLGEHDRLSKNESV-----------PVIIRKVKRAIRHPDFSLSNFNN 190
C+ G+ ++ LGEH R+S E PV+ +++ + H + + +
Sbjct: 164 CVHGLQNDLYEIRLGEH-RISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMH 222
Query: 191 DIALLEMESGVDFEAPQIHPACLP------------------GNSLDERKPTANSLRKVE 232
DIALL++ V F+ I P CLP G E +++ L +
Sbjct: 223 DIALLKLNRSVPFQK-HIKPICLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQAN 281
Query: 233 VPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQ 277
VP+ C A A ++ LC G + +DSC+GDSGGPLQ
Sbjct: 282 VPLQPRSACSQAYRRAVPLSQ--LCVGGGD-LQDSCKGDSGGPLQ 323
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
V GWG E +++ L + VP+ C A A ++ LC G + +DSC+G
Sbjct: 261 FVTGWGT-TENGSSSDVLLQANVPLQPRSACSQAYRRAVPLSQ--LCVGGGD-LQDSCKG 316
Query: 72 DSGGPLQIAVARPGKME------------VIACGQVERNQRIVGGNVTKLHEF-PWIA 116
DSGGPLQ G+ V+ CGQ+ + G T + E+ WI
Sbjct: 317 DSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQIS-----LPGLYTNVGEYVQWIT 369
>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|B Chain B, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|C Chain C, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|D Chain D, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
Length = 235
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 97/197 (49%), Gaps = 29/197 (14%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
RI+GG + H P++A++ G CG L+A++ VL+AAHC+E +++V LG H
Sbjct: 7 RILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHS 66
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLD 219
LS+ E + V RA+ HPD ++D+ LL++ P + P LP +D
Sbjct: 67 -LSQPEPSKRLY-DVLRAVPHPDSQPDTIDHDLLLLQLSEKATL-GPAVRP--LPWQRVD 121
Query: 220 E--------------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
R+P +SL+ V +P+L C + IT ++CA
Sbjct: 122 RDVAPGTLCDVAGWGIVNHAGRRP--DSLQHVLLPVLDRATCNRRTHHDGAITERLMCA- 178
Query: 260 YAEGKRDSCQGDSGGPL 276
+RDSC+GDSGGPL
Sbjct: 179 -ESNRRDSCKGDSGGPL 194
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 1 MDEANYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 60
+D G + VAGWG ++ +SL+ V +P+L C + IT ++CA
Sbjct: 120 VDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA- 178
Query: 61 YAEGKRDSCQGDSGGPL 77
+RDSC+GDSGGPL
Sbjct: 179 -ESNRRDSCKGDSGGPL 194
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 32/204 (15%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLPG----------------NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNM 255
CLP K + L+ V +PI+ CK + + RIT+NM
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 176
Query: 256 LCAGYA--EGKR-DSCQGDSGGPL 276
CAGY EGKR D+C+GDSGGP
Sbjct: 177 FCAGYKPDEGKRGDACEGDSGGPF 200
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 14/98 (14%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 62
+A Y G+ V GWG L K + L+ V +PI+ CK + + RIT+NM CAGY
Sbjct: 131 QAGYKGR---VTGWGNL---KGQPSVLQVVNLPIVERPVCKDS--TRIRITDNMFCAGYK 182
Query: 63 --EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 183 PDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 220
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 109/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 89
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ E+ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 90 LVRIGKHSR-TRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 147
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 148 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 206
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 207 -TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 239
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 161 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 215
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 216 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 259
>pdb|1KIG|H Chain H, Bovine Factor Xa
Length = 241
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 27/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAALT-KKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG E PW A L ++ + +CG T++ + +VLTAAHC+ K V +G D
Sbjct: 1 IVGGRDCAEGECPWQALLVNEENEGFCGGTILNEFYVLTAAHCLH--QAKRFTVRVG--D 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL- 218
R ++ E + +V+ ++H F ++ DIA+L +++ + F + PACLP
Sbjct: 57 RNTEQEEGNEMAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRR-NVAPACLPEKDWA 115
Query: 219 ------------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
E+ +++L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 116 EATLMTQKTGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTCKLS--SSFTITPNMFCAGY 173
Query: 261 AEGKRDSCQGDSGGP 275
D+CQGDSGGP
Sbjct: 174 DTQPEDACQGDSGGP 188
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
T K GIV+G+GR E+ +++L+ +EVP + CK + S+ IT NM CAGY
Sbjct: 121 TQKTGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTCKLS--SSFTITPNMFCAGYDTQPE 178
Query: 67 DSCQGDSGGP 76
D+CQGDSGGP
Sbjct: 179 DACQGDSGGP 188
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 45/215 (20%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP--------------------GN-------SLDERKPTANSLRKVEVPILSEEECKSA 244
CLP GN +++E +P+ L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLRETWTTNINEIQPSV--LQVVNLPIVERPVCKDS 176
Query: 245 GYSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 --TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDERKPT------ANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E T + L+ V +PI+ CK + + RIT+NM
Sbjct: 131 QAGYKGR---VTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 185
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 186 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 25/198 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFY-CGATLIAKRHVLTAAHC------IEGVNPKEIKV 153
+VGG E+PW +L G+ + CGA+LI+ +++AAHC +P +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 154 TLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDF---------- 203
LG HD+ S+ + V R++KR I HP F+ F+ DIALLE+E ++
Sbjct: 61 FLGLHDQ-SQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLP 119
Query: 204 EAPQIHPA----CLPGNSLDERKPT-ANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
+A + PA + G + T A L+K E+ ++++ C++ +IT M+C
Sbjct: 120 DASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCEN--LLPQQITPRMMCV 177
Query: 259 GYAEGKRDSCQGDSGGPL 276
G+ G DSCQGDSGGPL
Sbjct: 178 GFLSGGVDSCQGDSGGPL 195
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
GK V GWG A L+K E+ ++++ C++ +IT M+C G+ G D
Sbjct: 128 GKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCEN--LLPQQITPRMMCVGFLSGGVD 185
Query: 68 SCQGDSGGPL 77
SCQGDSGGPL
Sbjct: 186 SCQGDSGGPL 195
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 29 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 88
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 89 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 146
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 147 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 205
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 206 -TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 238
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 160 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 214
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 215 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 258
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 36 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 95
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 96 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 153
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 154 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 212
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 213 -TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 245
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 167 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 221
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 222 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 265
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 32 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 91
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 92 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 149
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 150 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 208
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 209 -TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 241
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 163 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 217
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 218 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 261
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 89
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 90 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 147
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 148 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 206
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 207 -TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 239
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 161 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 215
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 216 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 259
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 32 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 91
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 92 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 149
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 150 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 208
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 209 -TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 241
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 163 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 217
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 218 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 261
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 89
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 90 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 147
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 148 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 206
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 207 -TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 239
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 161 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 215
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 216 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 259
>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex
pdb|1VJ9|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt464 Complex
pdb|1VJA|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt463 Complex
Length = 262
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 109/237 (45%), Gaps = 38/237 (16%)
Query: 90 IACGQVERNQR--IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHC 142
CGQ R I+GG T + PW AA+ ++ + + CG +LI+ V++A HC
Sbjct: 3 FQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHC 62
Query: 143 IEGVNPKEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESG 200
KE + RL+ N + +V+ I H D+S +NDIALL++ S
Sbjct: 63 FIDYPKKEDYIVYLGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSK 121
Query: 201 VD-----------------FEAPQIHPAC-LPG----NSLDERKPTANSLRKVEVPILSE 238
+ PQ +C + G NS D P L+ V ++S
Sbjct: 122 EGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYP--EQLKMTVVKLISH 179
Query: 239 EECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 180 RECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 232
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 169 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 226
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTKK 121
+ R + G T++ H PWI + TK+
Sbjct: 227 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 262
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 89
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 90 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 147
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 148 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 206
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 207 -TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 239
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 161 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 215
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 216 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 259
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 36 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 95
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 96 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 153
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 154 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 212
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 213 -TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 245
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 167 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 221
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 222 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 265
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 37/228 (16%)
Query: 95 VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCI-----EGVNPK 149
VE+ QRI+GG K+ FPW G+ G L+ R +LTAAH + E +
Sbjct: 84 VEQRQRIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTLYPKEHEAQSNA 141
Query: 150 EIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLS---NFNNDIALLEMESGVDFEAP 206
+ V LG + E + + ++R HPD+ NF DIALLE+E+ V P
Sbjct: 142 SLDVFLGH---TNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTL-GP 197
Query: 207 QIHPACLPGNS----------------LDERKPTANSLRKVEVPILSEEECKSAGYSASR 250
+ P CLP N ++E+ A+ LR V +P+ + + C++ +R
Sbjct: 198 NLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQACENWLRGKNR 255
Query: 251 I---TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
+ + NM CAG+ K+D+CQGD+GG AV P + +VS
Sbjct: 256 MDVFSQNMFCAGHPSLKQDACQGDAGGVF--AVRDPNTDRWVATGIVS 301
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 7/91 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRI---TNNMLCAGYAEG 64
G +G V+G+G ++E+ A+ LR V +P+ + + C++ +R+ + NM CAG+
Sbjct: 214 GLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 271
Query: 65 KRDSCQGDSGGPLQIAVARPGKMEVIACGQV 95
K+D+CQGD+GG AV P +A G V
Sbjct: 272 KQDACQGDAGGVF--AVRDPNTDRWVATGIV 300
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 29/196 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIE-GVNPKEIKVTLGEHD 159
+VGG K +FPW L K +CG +++ ++ ++TAAHC+E GV +I V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGV---KITVVAGEHN 57
Query: 160 RLSKNESVPVIIRKVKRAIRHPDF--SLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
+ + E R V R I H ++ +++ +N+DIALLE++ + + + P C+
Sbjct: 58 -IEETEHTEQK-RNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNS-YVTPICIADKE 114
Query: 218 LD------------------ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
+ +A L+ + VP++ C + + I NNM CAG
Sbjct: 115 YTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTIYNNMFCAG 172
Query: 260 YAEGKRDSCQGDSGGP 275
+ EG RDSCQGD+GGP
Sbjct: 173 FHEGGRDSCQGDAGGP 188
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 11 GIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
G V+GWGR+ + +A L+ + VP++ C + + I NNM CAG+ EG RDSCQ
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTIYNNMFCAGFHEGGRDSCQ 182
Query: 71 GDSGGP 76
GD+GGP
Sbjct: 183 GDAGGP 188
>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9P|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
Length = 245
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 102/207 (49%), Gaps = 40/207 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKF---YCGATLIAKRHVLTAAHCIEGVNPKEI---KVT 154
IVGG ++PW +L + ++ +CG +LI + VLTAAHC+ G + K++ +V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV-GPDVKDLATLRVQ 59
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
L E +++ +PV R I HP F + DIALLE+E V+ + ++H LP
Sbjct: 60 LREQHLYYQDQLLPV-----SRIIVHPQFYIIQTGADIALLELEEPVNISS-RVHTVMLP 113
Query: 215 GNSL------------------DERKPTANSLRKVEVPILSEEECKS-------AGYSAS 249
S DE P L++V+VPI+ C + G
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR 173
Query: 250 RITNNMLCAGYAEGKRDSCQGDSGGPL 276
I ++MLCAG +RDSC+GDSGGPL
Sbjct: 174 IIRDDMLCAG--NSQRDSCKGDSGGPL 198
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 13 VAGWGRLD--ERKPTANSLRKVEVPILSEEECKS-------AGYSASRITNNMLCAGYAE 63
V GWG +D E P L++V+VPI+ C + G I ++MLCAG
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--N 184
Query: 64 GKRDSCQGDSGGPL 77
+RDSC+GDSGGPL
Sbjct: 185 SQRDSCKGDSGGPL 198
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP--------------------GN-----SLDERKPTANSLRKVEVPILSEEECKSAGY 246
CLP GN + + K + L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+CQGDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACQGDSGGPF 209
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDERKPT------ANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E T + L+ V +PI+ CK + + RIT+NM
Sbjct: 131 QAGYKGR---VTGWGNLKETWTTNVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 185
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+CQGDSGGP + R +M +++ G+
Sbjct: 186 FCAGYKPDEGKRGDACQGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1LTO|A Chain A, Human Alpha1-Tryptase
pdb|1LTO|B Chain B, Human Alpha1-Tryptase
pdb|1LTO|C Chain C, Human Alpha1-Tryptase
pdb|1LTO|D Chain D, Human Alpha1-Tryptase
Length = 245
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 102/207 (49%), Gaps = 40/207 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKF---YCGATLIAKRHVLTAAHCIEGVNPKEI---KVT 154
IVGG ++PW +L + ++ +CG +LI + VLTAAHC+ G + K++ +V
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCL-GPDVKDLATLRVQ 59
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
L E +++ +PV R I HP F + DIALLE+E V+ + ++H LP
Sbjct: 60 LREQHLYYQDQLLPV-----SRIIVHPQFYIIQTGADIALLELEEPVNISS-RVHTVMLP 113
Query: 215 GNSL------------------DERKPTANSLRKVEVPILSEEECKS-------AGYSAS 249
S DE P L++V+VPI+ C + G
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR 173
Query: 250 RITNNMLCAGYAEGKRDSCQGDSGGPL 276
I ++MLCAG +RDSC+GDSGGPL
Sbjct: 174 IIRDDMLCAG--NSQRDSCKGDSGGPL 198
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 13 VAGWGRLD--ERKPTANSLRKVEVPILSEEECKS-------AGYSASRITNNMLCAGYAE 63
V GWG +D E P L++V+VPI+ C + G I ++MLCAG
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--N 184
Query: 64 GKRDSCQGDSGGPL 77
+RDSC+GDSGGPL
Sbjct: 185 SQRDSCKGDSGGPL 198
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 108/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 165 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 224
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 225 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 282
Query: 211 ACLP--------------------GN-----SLDERKPTANSLRKVEVPILSEEECKSAG 245
CLP GN + + K + L+ V +PI+ CK +
Sbjct: 283 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 341
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 342 -TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 374
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 296 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 350
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 351 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 394
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 37/228 (16%)
Query: 95 VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCI-----EGVNPK 149
VE+ Q+I+GG K+ FPW G+ G L+ R +LTAAH + E +
Sbjct: 152 VEQRQQIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTLYPKEHEAQSNA 209
Query: 150 EIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLS---NFNNDIALLEMESGVDFEAP 206
+ V LG + E + + ++R HPD+ NF DIALLE+E+ V P
Sbjct: 210 SLDVFLGH---TNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTL-GP 265
Query: 207 QIHPACLPGNS----------------LDERKPTANSLRKVEVPILSEEECKSAGYSASR 250
+ P CLP N ++E+ A+ LR V +P+ + + C++ +R
Sbjct: 266 NLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQACENWLRGKNR 323
Query: 251 I---TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
+ + NM CAG+ K+D+CQGDSGG AV P + +VS
Sbjct: 324 MDVFSQNMFCAGHPSLKQDACQGDSGGVF--AVRDPNTDRWVATGIVS 369
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 7/91 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRI---TNNMLCAGYAEG 64
G +G V+G+G ++E+ A+ LR V +P+ + + C++ +R+ + NM CAG+
Sbjct: 282 GLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 339
Query: 65 KRDSCQGDSGGPLQIAVARPGKMEVIACGQV 95
K+D+CQGDSGG AV P +A G V
Sbjct: 340 KQDACQGDSGGVF--AVRDPNTDRWVATGIV 368
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 108/216 (50%), Gaps = 45/216 (20%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 49 RIVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDL 108
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLS-NFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R V I K I HP ++ N + DIALL+++ ++ + IHP
Sbjct: 109 LVRIGKHSRTRYERKVEKISMLDKIYI-HPRYNWKENLDRDIALLKLKRPIEL-SDYIHP 166
Query: 211 ACLP--------------------GN-------SLDERKPTANSLRKVEVPILSEEECKS 243
CLP GN S+ E +P+ L+ V +P++ CK+
Sbjct: 167 VCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSV--LQVVNLPLVERPVCKA 224
Query: 244 AGYSASRITNNMLCAGY--AEGKR-DSCQGDSGGPL 276
+ + RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 225 S--TRIRITDNMFCAGYKPGEGKRGDACEGDSGGPF 258
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 6 YTGKIGIVAGWGRLDERKPTA------NSLRKVEVPILSEEECKSAGYSASRITNNMLCA 59
+ G G V GWG E T+ + L+ V +P++ CK++ + RIT+NM CA
Sbjct: 180 HAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKAS--TRIRITDNMFCA 237
Query: 60 GY--AEGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
GY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 238 GYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGE 278
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 60
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 118
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 177
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GD+GGP
Sbjct: 178 -TRIRITDNMFCAGYKPDEGKRGDACEGDAGGPF 210
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 132 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 185
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GD+GGP + R +M +++ G+
Sbjct: 186 MFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGE 230
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 31 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 90
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 91 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 148
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 149 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 207
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GD+GGP
Sbjct: 208 -TRIRITDNMFCAGYKPDEGKRGDACEGDAGGPF 240
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 162 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 216
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GD+GGP + R +M +++ G+
Sbjct: 217 FCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGE 260
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 95/199 (47%), Gaps = 28/199 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 159
IVGG V E PW L G CG TLI V++AAHC + + N + + LGEHD
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLD 219
LS+++ R+V + I + N+DIALL + V + P CLP +
Sbjct: 61 -LSEHDGDEQS-RRVAQVIIPSTYVPGTTNHDIALLRLHQPVVL-TDHVVPLCLPERTFS 117
Query: 220 ERK-------------------PTANSLRKVEVPILSEEEC----KSAGYSASRITNNML 256
ER TA L + VP L ++C + G S + IT M
Sbjct: 118 ERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPN-ITEYMF 176
Query: 257 CAGYAEGKRDSCQGDSGGP 275
CAGY++G +DSC+GDSGGP
Sbjct: 177 CAGYSDGSKDSCKGDSGGP 195
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 9 KIGIVAGWGRLDERKPTANSLRKVEVPILSEEEC----KSAGYSASRITNNMLCAGYAEG 64
+ +V+GWG+L +R TA L + VP L ++C + G S + IT M CAGY++G
Sbjct: 125 RFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPN-ITEYMFCAGYSDG 183
Query: 65 KRDSCQGDSGGP 76
+DSC+GDSGGP
Sbjct: 184 SKDSCKGDSGGP 195
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 41/214 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEI 151
RIV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 49 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 108
Query: 152 KVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHP 210
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 109 LVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHP 166
Query: 211 ACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAG 245
CLP G + TAN L+ V +PI+ CK +
Sbjct: 167 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS- 225
Query: 246 YSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GD+GGP
Sbjct: 226 -TRIRITDNMFCAGYKPDEGKRGDACEGDAGGPF 258
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 3 EANYTGKIGIVAGWGRLDER------KPTANSLRKVEVPILSEEECKSAGYSASRITNNM 56
+A Y G+ V GWG L E K + L+ V +PI+ CK + + RIT+NM
Sbjct: 180 QAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDNM 234
Query: 57 LCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
CAGY EGKR D+C+GD+GGP + R +M +++ G+
Sbjct: 235 FCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGE 278
>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 29/196 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GG + H P++A++ G+ CG L+A++ VL+AAHC+E +++V LG H
Sbjct: 1 ILGGREAEAHARPYMASVQVNGEHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHS- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLDE 220
LS+ E + V RA+ HPD ++D+ LL++ P + P LP +D
Sbjct: 60 LSQPEPSKRLY-DVLRAVPHPDSRPDTIDHDLLLLQLSEKATL-GPAVRP--LPWQRVDR 115
Query: 221 --------------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R+P + L+ V +P+L C + IT M+CA
Sbjct: 116 DVEPGTLCDVAGWGIVSHAGRRP--DRLQHVLLPVLDRATCNRRTHHDGAITQRMMCA-- 171
Query: 261 AEGKRDSCQGDSGGPL 276
+RDSC+GDSGGPL
Sbjct: 172 ESNRRDSCKGDSGGPL 187
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + VAGWG + + L+ V +P+L C + IT M+CA +RD
Sbjct: 120 GTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGAITQRMMCA--ESNRRD 177
Query: 68 SCQGDSGGPL 77
SC+GDSGGPL
Sbjct: 178 SCKGDSGGPL 187
>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|B Chain B, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|C Chain C, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|D Chain D, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|E Chain E, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|F Chain F, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
Length = 276
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 107/237 (45%), Gaps = 38/237 (16%)
Query: 90 IACGQVERNQR--IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHC 142
CGQ R I+GG T + PW AA+ ++ + + CG +L++ V++A HC
Sbjct: 11 FQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHC 70
Query: 143 IEGVNPKEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESG 200
KE + RL+ N + +V+ I H D+S +NDIALL++ S
Sbjct: 71 FIDYPKKEDYIVYLGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSK 129
Query: 201 VDFEAP---QIHPACLPG-------------------NSLDERKPTANSLRKVEVPILSE 238
A I CLP NS D P L+ V ++S
Sbjct: 130 EGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYP--EQLKMTVVKLISH 187
Query: 239 EECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 188 RECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 240
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 177 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 234
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTKK 121
+ R + G T++ H PWI + TK+
Sbjct: 235 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 270
>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme
pdb|1DSU|B Chain B, Human Factor D, Complement Activating Enzyme
pdb|1DFP|A Chain A, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DFP|B Chain B, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DIC|A Chain A, Structure Of 3,4-Dichloroisocoumarin-Inhibited Factor D
pdb|1BIO|A Chain A, Human Complement Factor D In Complex With Isatoic
Anhydride Inhibitor
pdb|1HFD|A Chain A, Human Complement Factor D In A P21 Crystal Form
pdb|4D9R|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 29/196 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GG + H P++A++ G CG L+A++ VL+AAHC+E +++V LG H
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHS- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLDE 220
LS+ E + V RA+ HPD ++D+ LL++ P + P LP +D
Sbjct: 60 LSQPEPSKRLY-DVLRAVPHPDSQPDTIDHDLLLLQLSEKATL-GPAVRP--LPWQRVDR 115
Query: 221 --------------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R+P +SL+ V +P+L C + IT ++CA
Sbjct: 116 DVAPGTLCDVAGWGIVNHAGRRP--DSLQHVLLPVLDRATCNRRTHHDGAITERLMCA-- 171
Query: 261 AEGKRDSCQGDSGGPL 276
+RDSC+GDSGGPL
Sbjct: 172 ESNRRDSCKGDSGGPL 187
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 1 MDEANYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 60
+D G + VAGWG ++ +SL+ V +P+L C + IT ++CA
Sbjct: 113 VDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA- 171
Query: 61 YAEGKRDSCQGDSGGPL 77
+RDSC+GDSGGPL
Sbjct: 172 -ESNRRDSCKGDSGGPL 187
>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a
pdb|2XWA|B Chain B, Crystal Structure Of Complement Factor D Mutant R202a
Length = 228
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 29/196 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GG + H P++A++ G CG L+A++ VL+AAHC+E +++V LG H
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHS- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLDE 220
LS+ E + V RA+ HPD ++D+ LL++ P + P LP +D
Sbjct: 60 LSQPEPSKRLY-DVLRAVPHPDSQPDTIDHDLLLLQLSEKATL-GPAVRP--LPWQRVDR 115
Query: 221 --------------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R+P +SL+ V +P+L C + IT ++CA
Sbjct: 116 DVAPGTLCDVAGWGIVNHAGRRP--DSLQHVLLPVLDRATCNRRTHHDGAITERLMCA-- 171
Query: 261 AEGKRDSCQGDSGGPL 276
+RDSC+GDSGGPL
Sbjct: 172 ESNRRDSCKGDSGGPL 187
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 1 MDEANYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 60
+D G + VAGWG ++ +SL+ V +P+L C + IT ++CA
Sbjct: 113 VDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA- 171
Query: 61 YAEGKRDSCQGDSGGPL 77
+RDSC+GDSGGPL
Sbjct: 172 -ESNRRDSCKGDSGGPL 187
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ E+ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSR-TRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ E+ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSR-TRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGPLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGK 229
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 16/85 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPL 77
M CAGY EGKR D+C+GDSGGP
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPF 209
>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
pdb|3IG6|D Chain D, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
Length = 253
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 103/224 (45%), Gaps = 36/224 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +LI+ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVDFEAP---QIHP 210
RL+ N + +V+ I H D+S +NDIALL++ S A I
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 211 ACLPG-------------------NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
CLP NS D P L+ V ++S EC+ Y S +
Sbjct: 120 ICLPSMYNDPQFGTSCEITGFGKENSTDYLYP--EQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
T MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 178 TTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTKK 121
+ R + G T++ H PWI + TK+
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W10|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W11|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W12|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W13|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W14|U Chain U, Urokinase Type Plasminogen Activator
pdb|3MHW|U Chain U, The Complex Crystal Structure Of Urokianse And 2-
Aminobenzothiazole
Length = 247
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 36/224 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +LI+ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVD----------- 202
RL+ N + +V+ I H D+S +NDIALL++ S
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 203 ------FEAPQIHPAC-LPG----NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
+ PQ +C + G NS D P L+ V ++S EC+ Y S +
Sbjct: 120 ISLPSMYNDPQFGTSCEITGFGKENSTDYLYP--EQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
T MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 178 TTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTKK 121
+ R + G T++ H PWI + TK+
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 16/85 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPL 77
M CAGY EGKR D+C+GDSGGP
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPF 209
>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And
5-Nitro-1h-Indole-2- Amidine
Length = 246
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 36/224 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +LI+ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVD----------- 202
RL+ N + +V+ I H D+S +NDIALL++ S
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 203 ------FEAPQIHPAC-LPG----NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
+ PQ +C + G NS D P L+ V ++S EC+ Y S +
Sbjct: 120 IALPSMYNDPQFGTSCEITGFGKENSTDYLYP--EQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
T MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 178 TTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTK 120
+ R + G T++ H PWI + TK
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTK 246
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex
pdb|1F5K|U Chain U, Urokinase Plasminogen Activator B-Chain-Benzamidine
Complex
pdb|1F5L|A Chain A, Urokinase Plasminogen Activator B-Chain-Amiloride Complex
pdb|1F92|A Chain A, Urokinase Plasminogen Activator B Chain-Uki-1d Complex
pdb|2R2W|U Chain U, Urokinase Plasminogen Activator B-Chain-Gppe Complex
pdb|2VIN|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIO|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIP|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIQ|A Chain A, Fragment-based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-type
Plasminogen Activator
pdb|2VIV|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIW|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
Length = 253
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 36/224 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +LI+ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVD----------- 202
RL+ N + +V+ I H D+S +NDIALL++ S
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 203 ------FEAPQIHPAC-LPG----NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
+ PQ +C + G NS D P L+ V ++S EC+ Y S +
Sbjct: 120 ISLPSMYNDPQFGTSCEITGFGKENSTDYLYP--EQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
T MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 178 TTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTKK 121
+ R + G T++ H PWI + TK+
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 97/212 (45%), Gaps = 43/212 (20%)
Query: 102 VGGNVTKLHEFPWIAALTKKGK------FYCGATLIAKRHVLTAAHCI-EGVNPKEIKVT 154
GG T + PW AA+ + + F CG LI+ VLTAAHC E P ++KV
Sbjct: 15 TGGLFTDITSHPWQAAIFAQNRRSSGERFLCGGILISSCWVLTAAHCFQESYLPDQLKVV 74
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQ------- 207
LG R+ E KVK+ I H +F +NNDIALL+++S ++PQ
Sbjct: 75 LGRTYRVKPGEEEQTF--KVKKYIVHKEFDDDTYNNDIALLQLKS----DSPQCAQESDS 128
Query: 208 IHPACLPGNSLDERKPTANSL-----RKVEVPILSEE--ECKSAGYSASR---------- 250
+ CLP +L T L K P SE+ E Y +SR
Sbjct: 129 VRAICLPEANLQLPDWTECELSGYGKHKSSSPFYSEQLKEGHVRLYPSSRCAPKFLFNKT 188
Query: 251 ITNNMLCAGYAEGK------RDSCQGDSGGPL 276
+TNNMLCAG D+CQGDSGGPL
Sbjct: 189 VTNNMLCAGDTRSGEIYPNVHDACQGDSGGPL 220
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 13 VAGWGRLDERKP-TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK------ 65
++G+G+ P + L++ V + C +TNNMLCAG
Sbjct: 149 LSGYGKHKSSSPFYSEQLKEGHVRLYPSSRCAPKFLFNKTVTNNMLCAGDTRSGEIYPNV 208
Query: 66 RDSCQGDSGGPL 77
D+CQGDSGGPL
Sbjct: 209 HDACQGDSGGPL 220
>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
Prophenoloxidase Activating Factor-I In A Zymogen Form
Length = 278
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 107/221 (48%), Gaps = 38/221 (17%)
Query: 92 CGQVERNQRIVGGNVTKLHEFPWIAALTKKG-----KFYCGATLIAKRHVLTAAHCIEGV 146
CG +I+ G+ T EFPW A + K +F CG +LI R+++TAAHC+ G
Sbjct: 14 CGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGR 73
Query: 147 NPKEI----KVTLGEHDRLSKNES-------VP--VIIRKVKRAIRHPDF--SLSNFNND 191
+ + KV LGE + + + VP I ++ I+HPD+ + +D
Sbjct: 74 VLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHD 133
Query: 192 IALLEMESGVDFEAPQIHPACLP---------------GNSLDERKPTANSLRKVEVPIL 236
IAL+ + V+F I P CLP G E + +K+ VP++
Sbjct: 134 IALIRLNRQVEF-TNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQYSTIKQKLAVPVV 192
Query: 237 SEEEC-KSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
E+C K+ G + R+ ++ LCAG E +DSC GDSGGPL
Sbjct: 193 HAEQCAKTFGAAGVRVRSSQLCAG-GEKAKDSCGGDSGGPL 232
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEEC-KSAGYSASRITNNMLCAGYAEGKRDSCQG 71
V GWGR E + +K+ VP++ E+C K+ G + R+ ++ LCAG E +DSC G
Sbjct: 169 VVGWGRT-ETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAG-GEKAKDSCGG 226
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 227 DSGGPL 232
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 107/215 (49%), Gaps = 45/215 (20%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLS-NFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R V I K I HP ++ N + DIALL+++ ++ + IHP
Sbjct: 61 VRIGKHSRTRYERKVEKISMLDKIYI-HPRYNWKENLDRDIALLKLKRPIEL-SDYIHPV 118
Query: 212 CLP--------------------GN-------SLDERKPTANSLRKVEVPILSEEECKSA 244
CLP GN S+ E +P+ L+ V +P++ CK++
Sbjct: 119 CLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSV--LQVVNLPLVERPVCKAS 176
Query: 245 GYSASRITNNMLCAGY--AEGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 --TRIRITDNMFCAGYKPGEGKRGDACEGDSGGPF 209
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 6 YTGKIGIVAGWGRLDERKPTA------NSLRKVEVPILSEEECKSAGYSASRITNNMLCA 59
+ G G V GWG E T+ + L+ V +P++ CK++ + RIT+NM CA
Sbjct: 131 HAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKAS--TRIRITDNMFCA 188
Query: 60 GY--AEGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
GY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 189 GYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGE 229
>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1BBR|N Chain N, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1ETR|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETS|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETT|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1HRT|H Chain H, The Structure Of A Complex Of Bovine Alpha-Thrombin And
Recombinant Hirudin At 2.8 Angstroms Resolution
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|2A1D|B Chain B, Staphylocoagulase Bound To Bovine Thrombin
pdb|2A1D|F Chain F, Staphylocoagulase Bound To Bovine Thrombin
pdb|2ODY|B Chain B, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|2ODY|D Chain D, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|3PMA|B Chain B, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMA|D Chain D, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMB|B Chain B, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
pdb|3PMB|D Chain D, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
Length = 259
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 107/215 (49%), Gaps = 45/215 (20%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLS-NFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R V I K I HP ++ N + DIALL+++ ++ + IHP
Sbjct: 61 VRIGKHSRTRYERKVEKISMLDKIYI-HPRYNWKENLDRDIALLKLKRPIEL-SDYIHPV 118
Query: 212 CLP--------------------GN-------SLDERKPTANSLRKVEVPILSEEECKSA 244
CLP GN S+ E +P+ L+ V +P++ CK++
Sbjct: 119 CLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSV--LQVVNLPLVERPVCKAS 176
Query: 245 GYSASRITNNMLCAGY--AEGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 --TRIRITDNMFCAGYKPGEGKRGDACEGDSGGPF 209
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 6 YTGKIGIVAGWGRLDERKPTA------NSLRKVEVPILSEEECKSAGYSASRITNNMLCA 59
+ G G V GWG E T+ + L+ V +P++ CK++ + RIT+NM CA
Sbjct: 131 HAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKAS--TRIRITDNMFCA 188
Query: 60 GY--AEGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
GY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 189 GYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGE 229
>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|2CGA|B Chain B, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|1ACB|E Chain E, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1CGI|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1CGJ|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1EX3|A Chain A, Crystal Structure Of Bovine Chymotrypsinogen A
(Tetragonal)
pdb|1GL1|A Chain A, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|B Chain B, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|C Chain C, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL0|E Chain E, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-D2v, An Inhibitor From The Insect Locusta
Migratoria
pdb|1K2I|1 Chain 1, Crystal Structure Of Gamma-Chymotrypsin In Complex With 7-
Hydroxycoumarin
pdb|1P2M|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2M|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OXG|A Chain A, Crystal Structure Of A Complex Formed Between Organic
Solvent Treated Bovine Alpha-Chymotrypsin And Its
Autocatalytically Produced Highly Potent 14-Residue
Peptide At 2.2 Resolution
pdb|1T7C|A Chain A, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T7C|C Chain C, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|A Chain A, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|C Chain C, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|A Chain A, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|C Chain C, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|A Chain A, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|C Chain C, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|A Chain A, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|C Chain C, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1CHG|A Chain A, Chymotrypsinogen,2.5 Angstroms Crystal Structure,
Comparison With Alpha-Chymotrypsin,And Implications For
Zymogen Activation
pdb|1GCD|A Chain A, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2Y6T|A Chain A, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|B Chain B, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|C Chain C, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|D Chain D, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|3T62|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|B Chain B, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|C Chain C, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
Length = 245
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 98/195 (50%), Gaps = 28/195 (14%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKGKF-YCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH 158
RIV G +PW +L K F +CG +LI + V+TAAHC GV ++ V GE
Sbjct: 15 RIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC--GVTTSDV-VVAGEF 71
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL 218
D+ S +E + + K+ + ++ ++ NNDI LL++ + F + + CLP S
Sbjct: 72 DQGSSSEKIQKL--KIAKVFKNSKYNSLTINNDITLLKLSTAASF-SQTVSAVCLPSASD 128
Query: 219 D--------------ERKPTANS---LRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 261
D R AN+ L++ +P+LS CK Y ++I + M+CAG A
Sbjct: 129 DFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKK--YWGTKIKDAMICAG-A 185
Query: 262 EGKRDSCQGDSGGPL 276
G SC GDSGGPL
Sbjct: 186 SG-VSSCMGDSGGPL 199
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 8 GKIGIVAGWGRLDERKPTANS---LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEG 64
G + GWG R AN+ L++ +P+LS CK Y ++I + M+CAG A G
Sbjct: 133 GTTCVTTGWGL--TRYTNANTPDRLQQASLPLLSNTNCKK--YWGTKIKDAMICAG-ASG 187
Query: 65 KRDSCQGDSGGPL 77
SC GDSGGPL
Sbjct: 188 -VSSCMGDSGGPL 199
>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a
pdb|2XWB|I Chain I, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|J Chain J, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 228
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 29/196 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GG + H P++A++ G CG L+A++ VL+AAHC+E +++V LG H
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHS- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLDE 220
LS+ E + V RA+ HPD ++D+ LL++ P + P LP +D
Sbjct: 60 LSQPEPSKRLY-DVLRAVPHPDSQPDTIDHDLLLLQLSEKATL-GPAVRP--LPWQRVDR 115
Query: 221 --------------------RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
R+P +SL+ V +P+L C + IT ++CA
Sbjct: 116 DVAPGTLCDVAGWGIVNHAGRRP--DSLQHVLLPVLDRATCNRRTHHDGAITERLMCA-- 171
Query: 261 AEGKRDSCQGDSGGPL 276
+RDSC+GD+GGPL
Sbjct: 172 ESNRRDSCKGDAGGPL 187
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 1 MDEANYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 60
+D G + VAGWG ++ +SL+ V +P+L C + IT ++CA
Sbjct: 113 VDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA- 171
Query: 61 YAEGKRDSCQGDSGGPL 77
+RDSC+GD+GGPL
Sbjct: 172 -ESNRRDSCKGDAGGPL 187
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 93/199 (46%), Gaps = 25/199 (12%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNP--KEIKVTLGE 157
RIVGG T L +PW +L G CG +L++ VLTAAHC N +V G
Sbjct: 117 RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGA 176
Query: 158 HDRLSKN----ESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACL 213
+ S + V+ R P+ S N +NDIAL+ + S + I P CL
Sbjct: 177 VAQASPHGLQLGVQAVVYHGGYLPFRDPN-SEEN-SNDIALVHLSSPLPL-TEYIQPVCL 233
Query: 214 P--GNSLDERK--------------PTANSLRKVEVPILSEEECKSAGYSASRITNNMLC 257
P G +L + K A L++ VPI+S + C A + ++I M C
Sbjct: 234 PAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFC 293
Query: 258 AGYAEGKRDSCQGDSGGPL 276
AGY EG D+CQGDSGGP
Sbjct: 294 AGYPEGGIDACQGDSGGPF 312
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 42/75 (56%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 62
+A GKI V GWG A L++ VPI+S + C A + ++I M CAGY
Sbjct: 238 QALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYP 297
Query: 63 EGKRDSCQGDSGGPL 77
EG D+CQGDSGGP
Sbjct: 298 EGGIDACQGDSGGPF 312
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GD+GGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDAGGPF 209
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GD+GGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 93/199 (46%), Gaps = 25/199 (12%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNP--KEIKVTLGE 157
RIVGG T L +PW +L G CG +L++ VLTAAHC N +V G
Sbjct: 117 RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGA 176
Query: 158 HDRLSKN----ESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACL 213
+ S + V+ R P+ S N +NDIAL+ + S + I P CL
Sbjct: 177 VAQASPHGLQLGVQAVVYHGGYLPFRDPN-SEEN-SNDIALVHLSSPLPL-TEYIQPVCL 233
Query: 214 P--GNSLDERK--------------PTANSLRKVEVPILSEEECKSAGYSASRITNNMLC 257
P G +L + K A L++ VPI+S + C A + ++I M C
Sbjct: 234 PAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFC 293
Query: 258 AGYAEGKRDSCQGDSGGPL 276
AGY EG D+CQGDSGGP
Sbjct: 294 AGYPEGGIDACQGDSGGPF 312
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 42/75 (56%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 62
+A GKI V GWG A L++ VPI+S + C A + ++I M CAGY
Sbjct: 238 QALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYP 297
Query: 63 EGKRDSCQGDSGGPL 77
EG D+CQGDSGGP
Sbjct: 298 EGGIDACQGDSGGPF 312
>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With
2- Amino-5-Hydroxy-Benzimidazole
Length = 245
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 36/224 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +L++ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVD----------- 202
RL+ N + +V+ I H D+S +NDIALL++ S
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 203 ------FEAPQIHPAC-LPG----NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
+ PQ +C + G NS D P L+ V ++S EC+ Y S +
Sbjct: 120 IALPSMYNDPQFGTSCEITGFGKENSTDYLYP--EQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
T MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 178 TTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALT 119
+ R + G T++ H PWI + T
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245
>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
pdb|1LMW|D Chain D, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
Length = 253
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 103/224 (45%), Gaps = 36/224 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +L++ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVDFEAP---QIHP 210
RL+ N + +V+ I H D+S +NDIALL++ S A I
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 211 ACLPG-------------------NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
CLP NS D P L+ V ++S EC+ Y S +
Sbjct: 120 ICLPSMYNDPQFGTSCEITGFGKENSTDYLYP--EQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
T MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 178 TTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTKK 121
+ R + G T++ H PWI + TK+
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWI|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWJ|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWK|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQT|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1U6Q|A Chain A, Substituted 2-naphthamadine Inhibitors Of Urokinase
Length = 245
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 103/224 (45%), Gaps = 36/224 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +L++ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVDFEAP---QIHP 210
RL+ N + +V+ I H D+S +NDIALL++ S A I
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 211 ACLPG-------------------NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
CLP NS D P L+ V ++S EC+ Y S +
Sbjct: 120 ICLPSMYNDPQFGTSCEITGFGKENSTDYLYP--EQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
T MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 178 TTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALT 119
+ R + G T++ H PWI + T
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFIENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 33/222 (14%)
Query: 82 ARPGKMEVIACGQVERNQ-----RIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHV 136
A PG+ ACG+ + + RI+GG+ + PW+AA+ G +C +L+ V
Sbjct: 15 ASPGRQ---ACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWV 70
Query: 137 LTAAHCIEGVNPKE-IKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSN-FNNDIAL 194
++AAHC P++ + V LG+H ++ V +++ I + +S+ N ++D+ L
Sbjct: 71 VSAAHCFSHSPPRDSVSVVLGQH-FFNRTTDVTQTF-GIEKYIPYTLYSVFNPSDHDLVL 128
Query: 195 LEMESGVDFEAPQ---IHPACLP----------------GNSLDER-KPTANSLRKVEVP 234
+ ++ D A + + P CLP LDE ++SLR+ VP
Sbjct: 129 IRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVP 188
Query: 235 ILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
++++ +C S + I+ NMLCAGY + K D+CQGDSGGPL
Sbjct: 189 LVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPL 230
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 13 VAGWGRLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+AGWG LDE ++SLR+ VP++++ +C S + I+ NMLCAGY + K D+CQG
Sbjct: 165 IAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQG 224
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 225 DSGGPL 230
>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component B: A Novel, Glycosylated Two-chained Trypsin
Length = 238
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 24/198 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK--FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH 158
IVGG + +EFPW ++ +K +CG ++I R V+ AAHC++G P + + +GEH
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEH 60
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACL--PGN 216
D S S V + ++ + ND+++++ + F+ + P C P N
Sbjct: 61 D--SSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDI-NVGPICAPDPAN 117
Query: 217 SLDERKP------TANS--------LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE 262
RK T NS LR V + I + C + Y++ I ++M+CA
Sbjct: 118 DYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAV-YTSDTIYDDMICATDNT 176
Query: 263 G--KRDSCQGDSGGPLQI 278
G RDSCQGDSGGPL +
Sbjct: 177 GMTDRDSCQGDSGGPLSV 194
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 2 DEAN-YTGKIGIVAGWGRLDERKPTANS-LRKVEVPILSEEECKSAGYSASRITNNMLCA 59
D AN Y + +GWG ++ + LR V + I + C + Y++ I ++M+CA
Sbjct: 114 DPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAV-YTSDTIYDDMICA 172
Query: 60 GYAEG--KRDSCQGDSGGPLQI 79
G RDSCQGDSGGPL +
Sbjct: 173 TDNTGMTDRDSCQGDSGGPLSV 194
>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(ONE Molecule In The Asymmetric Unit)
pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
Length = 258
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 45/203 (22%)
Query: 113 PWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIKVTLGEHDRLSKN 164
PW L +K + CGA+LI+ R VLTAAHCI + ++ V +G+H R
Sbjct: 13 PWQVMLFRKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYE 72
Query: 165 ESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPACLP--------- 214
+V I +++ HP ++ N + DIALL+++ V F + IHP CLP
Sbjct: 73 RNVEK-ISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPF-SDYIHPVCLPDKQTVTSLL 130
Query: 215 -----------GN-------SLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNML 256
GN +++E +P+ L+ V +PI+ CK++ + RIT+NM
Sbjct: 131 RAGYKGRVTGWGNLRETWTTNINEIQPSV--LQVVNLPIVERPVCKAS--TRIRITDNMF 186
Query: 257 CAGYA--EGKR-DSCQGDSGGPL 276
CAG+ + KR D+C+GDSGGP
Sbjct: 187 CAGFKVNDTKRGDACEGDSGGPF 209
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 11/79 (13%)
Query: 8 GKIGIVAGWGRLDERKPT------ANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 61
G G V GWG L E T + L+ V +PI+ CK++ + RIT+NM CAG+
Sbjct: 133 GYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAS--TRIRITDNMFCAGF 190
Query: 62 A--EGKR-DSCQGDSGGPL 77
+ KR D+C+GDSGGP
Sbjct: 191 KVNDTKRGDACEGDSGGPF 209
>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
Thrombin
Length = 259
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 45/203 (22%)
Query: 113 PWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIKVTLGEHDRLSKN 164
PW L +K + CGA+LI+ R VLTAAHCI + ++ V +G+H R
Sbjct: 13 PWQVMLFRKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYE 72
Query: 165 ESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPACLP--------- 214
+V I +++ HP ++ N + DIALL+++ V F + IHP CLP
Sbjct: 73 RNVEK-ISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPF-SDYIHPVCLPDKQTVTSLL 130
Query: 215 -----------GN-------SLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNML 256
GN +++E +P+ L+ V +PI+ CK++ + RIT+NM
Sbjct: 131 RAGYKGRVTGWGNLRETWTTNINEIQPSV--LQVVNLPIVERPVCKAS--TRIRITDNMF 186
Query: 257 CAGYA--EGKR-DSCQGDSGGPL 276
CAG+ + KR D+C+GDSGGP
Sbjct: 187 CAGFKVNDTKRGDACEGDSGGPF 209
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 14/99 (14%)
Query: 8 GKIGIVAGWGRLDERKPT------ANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 61
G G V GWG L E T + L+ V +PI+ CK++ + RIT+NM CAG+
Sbjct: 133 GYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAS--TRIRITDNMFCAGF 190
Query: 62 A--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
+ KR D+C+GDSGGP + R +M +++ G+
Sbjct: 191 KVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 95/199 (47%), Gaps = 28/199 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 159
IVGG E PW L G CG TLI V++AAHC + + N + + LGEHD
Sbjct: 1 IVGGKDCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLD 219
LS+++ R+V + I + N+DIALL + V + P CLP +
Sbjct: 61 -LSEHDGDEQS-RRVAQVIIPSTYVPGTTNHDIALLRLHQPVVL-TDHVVPLCLPERTFS 117
Query: 220 ERK-------------------PTANSLRKVEVPILSEEEC----KSAGYSASRITNNML 256
ER TA L+ + VP L ++C + G S + IT M
Sbjct: 118 ERTLAFVRFSLVSGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSPN-ITEYMF 176
Query: 257 CAGYAEGKRDSCQGDSGGP 275
CAGY++G +DSC+GDSGGP
Sbjct: 177 CAGYSDGSKDSCKGDSGGP 195
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 9 KIGIVAGWGRLDERKPTANSLRKVEVPILSEEEC----KSAGYSASRITNNMLCAGYAEG 64
+ +V+GWG+L +R TA L+ + VP L ++C + G S + IT M CAGY++G
Sbjct: 125 RFSLVSGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSPN-ITEYMFCAGYSDG 183
Query: 65 KRDSCQGDSGGP 76
+DSC+GDSGGP
Sbjct: 184 SKDSCKGDSGGP 195
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 106/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + +IAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 209
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 103/206 (50%), Gaps = 31/206 (15%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA +IT+NM CAG G
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGLEGG-- 168
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 169 DSCQGDSGGP----VVCSGKLQGIVS 190
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA +IT+NM CAG G DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGLEGG--DSCQ 172
Query: 71 GDSGGPLQIAVARPGKMEVI 90
GDSGGP V GK++ I
Sbjct: 173 GDSGGP----VVCSGKLQGI 188
>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU8|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU9|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUB|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUC|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUD|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUE|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUF|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUG|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUH|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUI|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUJ|A Chain A, Crystal Structure Of The Urokinase
pdb|4DVA|U Chain U, The Crystal Structure Of Human Urokinase-type Plasminogen
Activator Catalytic Domain
pdb|4DW2|U Chain U, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 246
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +LI+ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVD----------- 202
RL+ N + +V+ I H D+S +NDIALL++ S
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 203 ------FEAPQIHPAC-LPG----NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
+ PQ +C + G S D P L+ V ++S EC+ Y S +
Sbjct: 120 IALPSMYNDPQFGTSCEITGFGKEQSTDYLYP--EQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
T MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 178 TTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTK 120
+ R + G T++ H PWI + TK
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTK 246
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 105/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+ DSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEADSGGPF 209
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+ DSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEADSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJ8|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJA|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJB|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1O3P|B Chain B, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1C5W|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5X|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Y|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Z|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GJ9|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJD|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJC|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
Length = 253
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 103/222 (46%), Gaps = 32/222 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +L++ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVDFEAP---QIHP 210
RL+ N + +V+ I H D+S +NDIALL++ S A I
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 211 ACLPGNSLDERKPTA-----------------NSLRKVEVPILSEEECKSAGYSASRITN 253
CLP D + T+ L+ V ++S EC+ Y S +T
Sbjct: 120 ICLPSMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTT 179
Query: 254 NMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 180 KMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTKK 121
+ R + G T++ H PWI + TK+
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWH|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQA|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQO|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
Length = 245
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 103/222 (46%), Gaps = 32/222 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +L++ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVDFEAP---QIHP 210
RL+ N + +V+ I H D+S +NDIALL++ S A I
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 211 ACLPGNSLDERKPTA-----------------NSLRKVEVPILSEEECKSAGYSASRITN 253
CLP D + T+ L+ V ++S EC+ Y S +T
Sbjct: 120 ICLPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTT 179
Query: 254 NMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 180 KMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALT 119
+ R + G T++ H PWI + T
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245
>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI7|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI9|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
Length = 245
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 103/222 (46%), Gaps = 32/222 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +L++ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVDFEAP---QIHP 210
RL+ N + +V+ I H D+S +NDIALL++ S A I
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 211 ACLPGNSLDERKPTA-----------------NSLRKVEVPILSEEECKSAGYSASRITN 253
CLP D + T+ L+ V ++S EC+ Y S +T
Sbjct: 120 ICLPSMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTT 179
Query: 254 NMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 180 KMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALT 119
+ R + G T++ H PWI + T
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245
>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed
By Crystal Structure Of Human Urokinase-Type Plasminogen
Activator Complexed With A Cyclic Peptidyl Inhibitor,
Upain-1
pdb|2O8T|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145Q) IN COMPLEX WITH
Inhibitors
pdb|3KGP|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KHV|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KID|U Chain U, The Crystal Structures Of 2-Aminobenzothiazole-Based
Inhibitors In Complexes With Urokinase-Type Plasminogen
Activator
pdb|3M61|U Chain U, Crystal Structure Of Complex Of Urokinase And A Upain-1
Variant(W3a) In Ph4.6 Condition
pdb|3OX7|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph4.6
pdb|3OY5|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph7.4
pdb|3OY6|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh036 At Ph4.6
pdb|3QN7|A Chain A, Potent And Selective Bicyclic Peptide Inhibitor (Uk18) Of
Human Urokinase-Type Plasminogen Activator(Upa)
Length = 253
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +LI+ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVD----------- 202
RL+ N + +V+ I H D+S +NDIALL++ S
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 203 ------FEAPQIHPAC-LPG----NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
+ PQ +C + G S D P L+ V ++S EC+ Y S +
Sbjct: 120 IALPSMYNDPQFGTSCEITGFGKEQSTDYLYP--EQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
T MLCA + K DSCQGDSGGPL ++ G+M TL+ +VS
Sbjct: 178 TTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTKK 121
+ R + G T++ H PWI + TK+
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par3
pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par4
Length = 258
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 45/203 (22%)
Query: 113 PWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIKVTLGEHDRLSKN 164
PW L +K + CGA+LI+ R VLTAAHCI + ++ V +G+H R
Sbjct: 13 PWQVMLFRKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYE 72
Query: 165 ESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPACLP--------- 214
+V I +++ HP ++ N + DIALL+++ V F + IHP CLP
Sbjct: 73 RNVEK-ISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPF-SDYIHPVCLPDKQTVTSLL 130
Query: 215 -----------GN-------SLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNML 256
GN +++E +P+ L+ V +PI+ CK++ + RIT+NM
Sbjct: 131 RAGYKGRVTGWGNLRETWTTNINEIQPSV--LQVVNLPIVERPVCKAS--TRIRITDNMF 186
Query: 257 CAGYA--EGKR-DSCQGDSGGPL 276
CAG+ + KR D+C+GD+GGP
Sbjct: 187 CAGFKVNDTKRGDACEGDAGGPF 209
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 14/99 (14%)
Query: 8 GKIGIVAGWGRLDERKPT------ANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 61
G G V GWG L E T + L+ V +PI+ CK++ + RIT+NM CAG+
Sbjct: 133 GYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAS--TRIRITDNMFCAGF 190
Query: 62 A--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
+ KR D+C+GD+GGP + R +M +++ G+
Sbjct: 191 KVNDTKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
pdb|1DLK|D Chain D, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
Length = 230
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 28/194 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKF-YCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IV G +PW +L K F +CG +LI + V+TAAHC GV ++ V GE D
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC--GVTTSDV-VVAGEFD 57
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLD 219
+ S +E + + K+ + ++ ++ NNDI LL++ + F + + CLP S D
Sbjct: 58 QGSSSEKIQKL--KIAKVFKNSKYNSLTINNDITLLKLSTAASF-SQTVSAVCLPSASDD 114
Query: 220 --------------ERKPTANS---LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE 262
R AN+ L++ +P+LS CK Y ++I + M+CAG A
Sbjct: 115 FAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKK--YWGTKIKDAMICAG-AS 171
Query: 263 GKRDSCQGDSGGPL 276
G SC GDSGGPL
Sbjct: 172 G-VSSCMGDSGGPL 184
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 8 GKIGIVAGWGRLDERKPTANS---LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEG 64
G + GWG R AN+ L++ +P+LS CK Y ++I + M+CAG A G
Sbjct: 118 GTTCVTTGWGL--TRYTNANTPDRLQQASLPLLSNTNCKK--YWGTKIKDAMICAG-ASG 172
Query: 65 KRDSCQGDSGGPL 77
SC GDSGGPL
Sbjct: 173 -VSSCMGDSGGPL 184
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 92/198 (46%), Gaps = 25/198 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNP--KEIKVTLGEH 158
IVGG T L +PW +L G CG +L++ VLTAAHC N +V G
Sbjct: 1 IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAV 60
Query: 159 DRLSKN----ESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
+ S + V+ R P+ S N +NDIAL+ + S + I P CLP
Sbjct: 61 AQASPHGLQLGVQAVVYHGGYLPFRDPN-SEEN-SNDIALVHLSSPLPLTE-YIQPVCLP 117
Query: 215 --GNSLDERK--------------PTANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
G +L + K A L++ VPI+S + C A + ++I M CA
Sbjct: 118 AAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCA 177
Query: 259 GYAEGKRDSCQGDSGGPL 276
GY EG D+CQGDSGGP
Sbjct: 178 GYPEGGIDACQGDSGGPF 195
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 42/75 (56%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 62
+A GKI V GWG A L++ VPI+S + C A + ++I M CAGY
Sbjct: 121 QALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYP 180
Query: 63 EGKRDSCQGDSGGPL 77
EG D+CQGDSGGP
Sbjct: 181 EGGIDACQGDSGGPF 195
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 105/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+C+ DSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACEPDSGGPF 209
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+C+ DSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDACEPDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 105/217 (48%), Gaps = 45/217 (20%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK------FYCGATLIAKRHVLTAAHCI------EGVNP 148
IV G+ ++ PW L K + F CGA+LI+ R VLTAAHC+ +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFAKHRRSPGERFLCGASLISDRWVLTAAHCLLYPPWDKNFTE 60
Query: 149 KEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQ 207
++ V +G+H R ++ I +++ HP ++ N + DIAL++++ V F +
Sbjct: 61 NDLLVRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDY 118
Query: 208 IHPACLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECK 242
IHP CLP G + TAN L+ V +PI+ CK
Sbjct: 119 IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK 178
Query: 243 SAGYSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ + RIT+NM CA Y EGKR D+C+GDSGGP
Sbjct: 179 DS--TRIRITDNMFCAYYKPDEGKRGDACEGDSGGPF 213
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 135 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 188
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CA Y EGKR D+C+GDSGGP + R +M +++ G+
Sbjct: 189 MFCAYYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 233
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 105/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAGY EGKR D+ +GDSGGP
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDAAEGDSGGPF 209
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAGY EGKR D+ +GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGYKPDEGKRGDAAEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii
From The Beetle Holotrichia Diomphalia
Length = 394
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 97/205 (47%), Gaps = 36/205 (17%)
Query: 105 NVTKLHEFPWIAALTKKG--------KFYCGATLIAKRHVLTAAHCIEGV--NPKEIKVT 154
N + EFPW+ A+ K + CG +LIA VLT AHC+ N IK+
Sbjct: 135 NEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIR 194
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP 214
GE D L++ E +P RK+++ I H +F+ ND+ALL ++ + +A I CLP
Sbjct: 195 AGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPL-VQADNIGTICLP 253
Query: 215 GNS-----------------LDERKPTANSLRKVEVPILSEEECKSAGYSASR------I 251
S R +N L+K+++P + ++C+ A +R +
Sbjct: 254 QQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQ-ADLRNTRLGLKFVL 312
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPL 276
+CAG +GK D+C GD G PL
Sbjct: 313 DQTFVCAGGEQGK-DTCTGDGGSPL 336
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 12 IVAGWGR--LDERKPTANSLRKVEVPILSEEECKSAGYSASR------ITNNMLCAGYAE 63
+GWG+ R +N L+K+++P + ++C+ A +R + +CAG +
Sbjct: 265 FASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQ-ADLRNTRLGLKFVLDQTFVCAGGEQ 323
Query: 64 GKRDSCQGDSGGPLQIA----VARPGKMEVIACGQVERNQRIVGGNVTKLHEFPWI 115
GK D+C GD G PL +R +M ++A G ++ + G H WI
Sbjct: 324 GK-DTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWI 378
>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|2O8W|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|3PB1|E Chain E, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 253
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +LI+ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVD----------- 202
RL+ N + +V+ I H D+S +NDIALL++ S
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 203 ------FEAPQIHPAC-LPG----NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
+ PQ +C + G S D P L+ V ++S EC+ Y S +
Sbjct: 120 IALPSMYNDPQFGTSCEITGFGKEQSTDYLYP--EQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
T MLCA + K DSCQGD+GGPL ++ G+M TL+ +VS
Sbjct: 178 TTKMLCAADPQWKTDSCQGDAGGPLVCSLQ--GRM--TLTGIVS 217
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K DSCQGD+GGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDAGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTKK 121
+ R + G T++ H PWI + TK+
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai)
Bt.D1
pdb|1V2V|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssai)
Bt.C1
pdb|1V2W|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssai)bt.B4
Length = 223
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 108/206 (52%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S++ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSAIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S++ IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSAIITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1O5B|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5C|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
Length = 253
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 103/222 (46%), Gaps = 32/222 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 155
I+GG T + PW AA+ ++ + + CG +L++ V++A HC KE +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 156 GEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVDFEAP---QIHP 210
RL+ N + +V+ I H D+S +NDIALL++ S A I
Sbjct: 61 LGRSRLNSNTQGEMKF-EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 211 ACLPGNSLDERKPTA-----------------NSLRKVEVPILSEEECKSAGYSASRITN 253
CLP D + T+ L+ V ++S EC+ Y S +T
Sbjct: 120 ICLPSMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTT 179
Query: 254 NMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
MLCA + K D+CQGDSGGPL ++ G+M TL+ +VS
Sbjct: 180 KMLCAADPQWKTDACQGDSGGPLVCSLQ--GRM--TLTGIVS 217
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKME 88
L+ V ++S EC+ Y S +T MLCA + K D+CQGDSGGPL ++ G+M
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDACQGDSGGPLVCSLQ--GRMT 211
Query: 89 VIACGQVERNQRIVG--GNVTKL-HEFPWIAALTKK 121
+ R + G T++ H PWI + TK+
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 30/199 (15%)
Query: 101 IVGGNVTKLHEFPWIAAL----TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
+VGG + + +PW +L + + + CG TL+ + VLTAAHCI + + +V LG
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCIS--SSRTYRVVLG 58
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFS---LSNFNNDIALLEMESGVDFEAPQIHPACL 213
H LS NE + + KV + + H D++ LSN NDIALL++ S V +I CL
Sbjct: 59 RHS-LSTNEPGSLAV-KVSKLVVHQDWNSNQLSN-GNDIALLKLASPVSL-TDKIQLGCL 114
Query: 214 PG----------------NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLC 257
P L + + L++ ++ ++ C G+ S + NM+C
Sbjct: 115 PAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMIC 174
Query: 258 AGYAEGKRDSCQGDSGGPL 276
AG +G SC GDSGGPL
Sbjct: 175 AG-GDGIISSCNGDSGGPL 192
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWGRL + + L++ ++ ++ C G+ S + NM+CAG +G SC GD
Sbjct: 129 VTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAG-GDGIISSCNGD 187
Query: 73 SGGPLQIAVARPGKMEV 89
SGGPL A G+ +V
Sbjct: 188 SGGPLNCQGAN-GQWQV 203
>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|Z Chain Z, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 237
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 33/201 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + + PW A+ + ++ CG L+ VLTAAHC + KV LG+++
Sbjct: 1 IVGGFKCEKNSQPWHVAVYRYTQYLCGGVLLDPNWVLTAAHCYD----DNYKVWLGKNNL 56
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLS-----------NFNNDIALLEMESGVDF------ 203
S R V +AI HP F++S +++ND+ LL + D
Sbjct: 57 FKDEPSAQH--RFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVKP 114
Query: 204 -----EAPQIHPACLP---GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNM 255
E P++ CL G+ + + L V + +L E+C A ++T+ M
Sbjct: 115 ITLPTEEPKLGSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAKA--HIEKVTDAM 172
Query: 256 LCAGYAEGKRDSCQGDSGGPL 276
LCAG +G +D+C+GDSGGPL
Sbjct: 173 LCAGEMDGGKDTCKGDSGGPL 193
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 8 GKIGIVAGWGRLDERK-PTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G + +GWG + K + L V + +L E+C A ++T+ MLCAG +G +
Sbjct: 125 GSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAKA--HIEKVTDAMLCAGEMDGGK 182
Query: 67 DSCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFP-WI 115
D+C+GDSGGPL G + + G + + G TKL++F WI
Sbjct: 183 DTCKGDSGGPLICDGVLQG---ITSWGHTPCGEPDMPGVYTKLNKFTSWI 229
>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGFYTKVCNYVSWI 216
>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.B4
pdb|1V2P|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.A4
Length = 223
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSYIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSYIITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 90/198 (45%), Gaps = 22/198 (11%)
Query: 97 RNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
R +RIVGG +L + PW A+ CG I +LTAAHC+ ++
Sbjct: 318 RRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTT 377
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEME---SGVDFEAPQIHPACL 213
D + + ++I V R I H +++ + NDIAL+EM+ + D E P+ PAC+
Sbjct: 378 VVDWIHPDLK-RIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACV 436
Query: 214 P---------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
P G ++ SL+ EV ++S S Y M CA
Sbjct: 437 PWSPYLFQPNDTCIVSGWGREKDNERVFSLQWGEVKLISN---CSKFYGNRFYEKEMECA 493
Query: 259 GYAEGKRDSCQGDSGGPL 276
G +G D+C+GDSGGPL
Sbjct: 494 GTYDGSIDACKGDSGGPL 511
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
IV+GWGR ++ SL+ EV ++S S Y M CAG +G D+C+G
Sbjct: 450 IVSGWGR-EKDNERVFSLQWGEVKLISN---CSKFYGNRFYEKEMECAGTYDGSIDACKG 505
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 506 DSGGPL 511
>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Sswi)bt.B4
Length = 223
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSWIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSWIITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVI 90
GDSGGP V GK++ I
Sbjct: 175 GDSGGP----VVCSGKLQGI 190
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 43/225 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKE--------IK 152
I+GG K+ FPW G+ G L+ R +LTAAH + PKE +
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTLY---PKEHEAQSNASLD 55
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLS---NFNNDIALLEMESGVDFEAPQIH 209
V LG + E + + ++R HPD+ NF DIALLE+E+ V P +
Sbjct: 56 VFLG---HTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTL-GPNLL 111
Query: 210 PACLPGNS----------------LDERKPTANSLRKVEVPILSEEECKSAGYSASRI-- 251
P CLP N ++E+ A+ LR V +P+ + + C++ +R+
Sbjct: 112 PICLPDNDTFYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDV 169
Query: 252 -TNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGKMEATLSKVVS 295
+ NM CAG+ K+D+CQGDSGG AV P + +VS
Sbjct: 170 FSQNMFCAGHPSLKQDACQGDSGGVF--AVRDPNTDRWVATGIVS 212
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 7/91 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRI---TNNMLCAGYAEG 64
G +G V+G+G ++E+ A+ LR V +P+ + + C++ +R+ + NM CAG+
Sbjct: 125 GLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 182
Query: 65 KRDSCQGDSGGPLQIAVARPGKMEVIACGQV 95
K+D+CQGDSGG AV P +A G V
Sbjct: 183 KQDACQGDSGGVF--AVRDPNTDRWVATGIV 211
>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri)
Bt.C1
pdb|1V2R|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssri)bt.B4
Length = 223
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFI-SASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSRIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSRIITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Ssfi.Glu)bt.D1
pdb|1V2T|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(ssfi.glu)bt.b4
Length = 223
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ + NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
DSCQGDSGGP V GK++ +S
Sbjct: 171 DSCQGDSGGP----VVCSGKLQGIVS 192
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +DSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDSCQ 174
Query: 71 GDSGGPLQIAVARPGKMEVI 90
GDSGGP V GK++ I
Sbjct: 175 GDSGGP----VVCSGKLQGI 190
>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin
Variant X(99175190)BT
Length = 223
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGDSGGP V GK++ +S
Sbjct: 171 DACQGDSGGP----VVCSGKLQGIVS 192
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 35/222 (15%)
Query: 101 IVGGNVTKLHEFPWIAALTKK--GKFY-CGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 157
I+GG+ K H P++A L K GK + CG L+ + VLTAAHC+ I VTLG
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLG----SSINVTLGA 56
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
H+ + + + VI V+R I HPD++ NDI LL++ D ++ P LP S
Sbjct: 57 HNIMERERTQQVI--PVRRPIPHPDYNDETLANDIMLLKLTRKADI-TDKVSPINLP-RS 112
Query: 218 LDERKP-----------------TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
L E KP + + L++V++ + SEE+C + I +CAG
Sbjct: 113 LAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKC--IARFKNYIPFTQICAGD 170
Query: 261 AEGKRDSCQGDSGGPLQI-----AVARPGKMEATLSKVVSRV 297
+++S GDSGGPL + G+ + T V +R+
Sbjct: 171 PSKRKNSFSGDSGGPLVCNGVAQGIVSYGRNDGTTPDVYTRI 212
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + VAGWGRL P+ + L++V++ + SEE+C + I +CAG +++
Sbjct: 119 GMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKC--IARFKNYIPFTQICAGDPSKRKN 176
Query: 68 SCQGDSGGPL 77
S GDSGGPL
Sbjct: 177 SFSGDSGGPL 186
>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin Variant X(Triple.Glu)bt.D2
pdb|1V2L|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.D1
pdb|1V2M|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.A1
Length = 223
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGDSGGP V GK++ +S
Sbjct: 171 DACQGDSGGP----VVCSGKLQGIVS 192
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVI 90
GDSGGP V GK++ I
Sbjct: 175 GDSGGP----VVCSGKLQGI 190
>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PWC|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PYH|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3Q00|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Comlex
With Small Molecule Inhibitor
Length = 223
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGDSGGP V GK++ +S
Sbjct: 171 DACQGDSGGP----VVCSGKLQGIVS 192
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVI 90
GDSGGP V GK++ I
Sbjct: 175 GDSGGP----VVCSGKLQGI 190
>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLB|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLP|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PM3|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGDSGGP V GK++ +S
Sbjct: 171 DACQGDSGGP----VVCSGKLQGIVS 192
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVI 90
GDSGGP V GK++ I
Sbjct: 175 GDSGGP----VVCSGKLQGI 190
>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UOP|A Chain A, Bovine Trypsin Variant X(triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UQO|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGDSGGP V GK++ +S
Sbjct: 171 DACQGDSGGP----VVCSGKLQGIVS 192
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGFYTKVCNYVSWI 216
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 105/213 (49%), Gaps = 41/213 (19%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP------------------GNSLDERKPTAN-------SLRKVEVPILSEEECKSAGY 246
CLP G + TAN L+ V +PI+ CK +
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 247 SASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
+ RIT+NM CAG+ + KR D+C+GDSGGP
Sbjct: 177 TRIRITDNMFCAGFKVNDTKRGDACEGDSGGPF 209
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 19/105 (18%)
Query: 3 EANYTGKIGIVAGWGRLDERKPTANS-------LRKVEVPILSEEECKSAGYSASRITNN 55
+A Y G+ V GWG L E TAN L+ V +PI+ CK + + RIT+N
Sbjct: 131 QAGYKGR---VTGWGNLKETW-TANVGKGQPSVLQVVNLPIVERPVCKDS--TRIRITDN 184
Query: 56 MLCAGYA--EGKR-DSCQGDSGGPLQIAVA---RPGKMEVIACGQ 94
M CAG+ + KR D+C+GDSGGP + R +M +++ G+
Sbjct: 185 MFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UPE|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|B Chain B, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGDSGGP V GK++ +S
Sbjct: 171 DACQGDSGGP----VVCSGKLQGIVS 192
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TKL + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGFYTKLCNYVSWI 216
>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|C Chain C, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 257
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 103/198 (52%), Gaps = 25/198 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKE-IKVTLGEHD 159
I+GG+ + PW+AA+ G +C +L+ V++AAHC P++ + V LG+H
Sbjct: 1 IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQH- 58
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSN-FNNDIALLEMESGVDFEAPQ---IHPACLP- 214
++ V +++ I + +S+ N ++D+ L+ ++ D A + + P CLP
Sbjct: 59 FFNRTTDVTQTF-GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPE 117
Query: 215 ---------------GNSLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
LDE ++SLR+ VP++++ +C S + I+ NMLCA
Sbjct: 118 PGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCA 177
Query: 259 GYAEGKRDSCQGDSGGPL 276
GY + K D+CQGDSGGPL
Sbjct: 178 GYFDCKSDACQGDSGGPL 195
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 13 VAGWGRLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+AGWG LDE ++SLR+ VP++++ +C S + I+ NMLCAGY + K D+CQG
Sbjct: 130 IAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQG 189
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 190 DSGGPL 195
>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75
Length = 248
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 103/198 (52%), Gaps = 25/198 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKE-IKVTLGEHD 159
I+GG+ + PW+AA+ G +C +L+ V++AAHC P++ + V LG+H
Sbjct: 1 IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQH- 58
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSN-FNNDIALLEMESGVDFEAPQ---IHPACLP- 214
++ V +++ I + +S+ N ++D+ L+ ++ D A + + P CLP
Sbjct: 59 FFNRTTDVTQTF-GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPE 117
Query: 215 ---------------GNSLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
LDE ++SLR+ VP++++ +C S + I+ NMLCA
Sbjct: 118 PGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCA 177
Query: 259 GYAEGKRDSCQGDSGGPL 276
GY + K D+CQGDSGGPL
Sbjct: 178 GYFDCKSDACQGDSGGPL 195
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 13 VAGWGRLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
+AGWG LDE ++SLR+ VP++++ +C S + I+ NMLCAGY + K D+CQG
Sbjct: 130 IAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQG 189
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 190 DSGGPL 195
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 97/217 (44%), Gaps = 43/217 (19%)
Query: 95 VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKV- 153
E QRI+GG+ + FPW + G LI + VLTAAH +EG + V
Sbjct: 77 FEEKQRIIGGSDADIKNFPWQVFFDNP---WAGGALINEYWVLTAAHVVEGNREPTMYVG 133
Query: 154 -TLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-------SNFNNDIALLEMESGVDFEA 205
T + RL+K++ + + HP + L +NF+NDIAL+ ++ V
Sbjct: 134 STSVQTSRLAKSK-----MLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKM-G 187
Query: 206 PQIHPACLPGNSLD-----------------ERKPTANSLRKVEVPILSEEECK------ 242
P + P CLPG S D E++ A L+ +P+ +CK
Sbjct: 188 PTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEK 247
Query: 243 -SAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQI 278
+A A T NM+CAG E DSC+GDSGG +
Sbjct: 248 PTADAEAYVFTPNMICAG-GEKGMDSCKGDSGGAFAV 283
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECK-------SAGYSASRITNNMLCAG 60
G +G+++GWGR ++R A L+ +P+ +CK +A A T NM+CAG
Sbjct: 207 GDLGLISGWGRTEKRD-RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAG 265
Query: 61 YAEGKRDSCQGDSGGPLQIAVARPG-KMEVIACGQV 95
E DSC+GDSGG AV P K + A G V
Sbjct: 266 -GEKGMDSCKGDSGG--AFAVQDPNDKTKFYAAGLV 298
>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin
pdb|2PSY|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin And Zinc
Length = 227
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 38/231 (16%)
Query: 101 IVGGNVTKLHEFPWIAALT-KKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
I+ G+ +H PW AAL + + YCGA L+ + +LTAAHC + K +V LG +
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRK----KVFRVRLGHYS 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMES-----------GVDFEAPQI 208
ES + + VK +I HP +S +ND+ L+++ V P
Sbjct: 57 LSPVYESGQQMFQGVK-SIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSA 115
Query: 209 HPACLPGNSLDERKPTANS---LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
CL + P + L+ + + +LS++ C+ A +I + M CAG G R
Sbjct: 116 GTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDA--YPRQIDDTMFCAGDKAG-R 172
Query: 266 DSCQGDSGGPL-------------QIAVARPGK--MEATLSKVVSRVQETV 301
DSCQGDSGGP+ ARP + + L K +QET+
Sbjct: 173 DSCQGDSGGPVVCNGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETI 223
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 12 IVAGWGRLDERKPTANS---LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDS 68
+V+GWG + P + L+ + + +LS++ C+ A +I + M CAG G RDS
Sbjct: 120 LVSGWG--TTKSPQVHFPKVLQCLNISVLSQKRCEDA--YPRQIDDTMFCAGDKAG-RDS 174
Query: 69 CQGDSGGPL 77
CQGDSGGP+
Sbjct: 175 CQGDSGGPV 183
>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +L+ + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLLNSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGDSGGP V GK++ +S
Sbjct: 171 DACQGDSGGP----VVCSGKLQGIVS 192
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GDSGGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDSGGP----VVCSGKLQGIVSWGSGCAQKNKPGIYTKVCNYVSWI 216
>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
pdb|1NPM|B Chain B, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
Length = 225
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 26/184 (14%)
Query: 110 HEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNESVPV 169
H PW AAL + + CG L+ R VLTAAHC + ++ V LG+H S+++
Sbjct: 10 HSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKK----QKYSVRLGDHSLQSRDQPEQE 65
Query: 170 IIRKVKRAIRHPDFSLSN---FNNDIALLEMESGVDFE-----------APQIHPACL-- 213
I +V ++I+HP ++ SN ++DI L+ +++ + P++ C+
Sbjct: 66 I--QVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKVGQKCIIS 123
Query: 214 -PGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDS 272
G ++ N+L EV I S+ +C+ A +IT M+CAG + G D+CQGDS
Sbjct: 124 GWGTVTSPQENFPNTLNCAEVKIYSQNKCERA--YPGKITEGMVCAGSSNGA-DTCQGDS 180
Query: 273 GGPL 276
GGPL
Sbjct: 181 GGPL 184
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 4 ANYTGKIG---IVAGWGRLDE-RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 59
AN K+G I++GWG + ++ N+L EV I S+ +C+ A +IT M+CA
Sbjct: 110 ANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERA--YPGKITEGMVCA 167
Query: 60 GYAEGKRDSCQGDSGGPL 77
G + G D+CQGDSGGPL
Sbjct: 168 GSSNGA-DTCQGDSGGPL 184
>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 223
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGD+GGP V GK++ +S
Sbjct: 171 DACQGDAGGP----VVCSGKLQGIVS 192
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GD+GGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDAGGP----VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 223
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGD+GGP V GK++ +S
Sbjct: 171 DACQGDAGGP----VVCSGKLQGIVS 192
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVI 90
GD+GGP V GK++ I
Sbjct: 175 GDAGGP----VVCSGKLQGI 190
>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 223
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGD+GGP V GK++ +S
Sbjct: 171 DACQGDAGGP----VVCSGKLQGIVS 192
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWI 115
GD+GGP V GK++ I Q+ G TK+ + WI
Sbjct: 175 GDAGGP----VVCSGKLQGIVSWGSGCAQKNKPGFYTKVCNYVSWI 216
>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
Length = 223
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGD+GGP V GK++ +S
Sbjct: 171 DACQGDAGGP----VVCSGKLQGIVS 192
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM CAGY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCAGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVI 90
GD+GGP V GK++ I
Sbjct: 175 GDAGGP----VVCSGKLQGI 190
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 34/212 (16%)
Query: 101 IVGG-NVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH- 158
IVGG + + P+ +L F G +LI + V++AAHC I+V LGEH
Sbjct: 1 IVGGYTCSAANSIPYQVSLNSGSHFCSGGSLINSQWVVSAAHCSY---KSRIQVRLGEHN 57
Query: 159 -DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP--- 214
D L NE + I HP+F+ + +NDI L+++ S + ++ LP
Sbjct: 58 IDVLEGNEQ----FINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNS-RVATVSLPRSC 112
Query: 215 -------------GNSLDERKPTANSLR-KVEVPILSEEECKSAGYSASRITNNMLCAGY 260
GN+ + L+ ++ P+LS+ CKS+ +IT NM+C G+
Sbjct: 113 AAAGTECSLISGWGNTKSSGSSYPSLLQCSLKAPVLSDSSCKSS--YPGQITGNMICVGF 170
Query: 261 AEGKRDSC-QGDSGGPLQIAVARPGKMEATLS 291
EG +DSC QGDSGGP+ V G+++ +S
Sbjct: 171 LEGGKDSCSQGDSGGPV---VCSNGQLQGIVS 199
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 10/109 (9%)
Query: 12 IVAGWGRLDERKPTANSLRK--VEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSC 69
+++GWG + SL + ++ P+LS+ CKS+ +IT NM+C G+ EG +DSC
Sbjct: 121 LISGWGNTKSSGSSYPSLLQCSLKAPVLSDSSCKSS--YPGQITGNMICVGFLEGGKDSC 178
Query: 70 -QGDSGGPLQIAVARPGKME-VIACGQVERNQRIVGGNVTKLHEF-PWI 115
QGDSGGP+ V G+++ +++ G Q+ G TK+ + WI
Sbjct: 179 SQGDSGGPV---VCSNGQLQGIVSWGYGCSAQKNKPGVYTKVCNYVNWI 224
>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|B Chain B, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|C Chain C, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|D Chain D, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|E Chain E, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|F Chain F, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|G Chain G, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|H Chain H, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|I Chain I, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|J Chain J, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|K Chain K, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|L Chain L, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|M Chain M, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|N Chain N, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|O Chain O, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|P Chain P, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V12|A Chain A, Bovine Trypsin Variant X(tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V13|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLNS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM C GY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCVGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGDSGGP V GK++ +S
Sbjct: 171 DACQGDSGGP----VVCSGKLQGIVS 192
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM C GY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCVGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVI 90
GDSGGP V GK++ I
Sbjct: 175 GDSGGP----VVCSGKLQGI 190
>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 29/206 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGE D
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGE-DN 54
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
++ E I ++I HP ++ +NNDI L++++S + ++ LP
Sbjct: 55 INVVEGNEQFIS-ASKSIVHPSYNSETYNNDIMLIKLKSAASLXS-RVASISLPTSCASA 112
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
GN+ + L+ ++ PILS+ CKSA S+ IT+NM C GY EG +
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCVGYLEGGK 170
Query: 266 DSCQGDSGGPLQIAVARPGKMEATLS 291
D+CQGDSGGP V GK++ +S
Sbjct: 171 DACQGDSGGP----VVCSGKLQGIVS 192
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 12 IVAGWGRLDERKPTA-NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+++GWG + + L+ ++ PILS+ CKSA S+ IT+NM C GY EG +D+CQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--SSFIITSNMFCVGYLEGGKDACQ 174
Query: 71 GDSGGPLQIAVARPGKMEVI 90
GDSGGP V GK++ I
Sbjct: 175 GDSGGP----VVCSGKLQGI 190
>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North
Atlantic Salmon At 1.61 Angstroms Resolution
Length = 236
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 27/201 (13%)
Query: 101 IVGGNVTKLHEFPW-IAALTKKGKFY---CGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
+VGG V + + +PW I+ K G Y CG +LI + V+TAAHC++ + + +V LG
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVD--SARTWRVVLG 58
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALL------EMESGVDFEA--- 205
EH+ L+ NE I+ V H ++ + DIALL + S V A
Sbjct: 59 EHN-LNTNEGKEQIM-TVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPP 116
Query: 206 -----PQIHPACLPG-NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
P +P + G P ++SL++ +P + C S+G+ S + M+CAG
Sbjct: 117 SNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAG 176
Query: 260 YAEGKRDSCQGDSGGPLQIAV 280
G C GDSGGPL V
Sbjct: 177 --GGANSGCNGDSGGPLNCQV 195
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+ GWG+ P ++SL++ +P + C S+G+ S + M+CAG G C GD
Sbjct: 129 ITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAG--GGANSGCNGD 186
Query: 73 SGGPLQIAV 81
SGGPL V
Sbjct: 187 SGGPLNCQV 195
>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
Length = 240
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 28/198 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHC----IEGVNPKEIKVTLG 156
I+GG H P++A++ G CG LI + VLTAAHC +G +P V LG
Sbjct: 3 IIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPT---VVLG 59
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
H LSKNE+ + ++K+ I + +NDI L+++++
Sbjct: 60 AHS-LSKNEASKQTL-EIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKT 117
Query: 217 SL----------------DERKPTANSLRKVEVPILSEEECKSAGYSASR--ITNNMLCA 258
SL D +P +++LR+V V +LS + C S Y IT +M+CA
Sbjct: 118 SLRSGTKCKVTGWGATDPDSLRP-SDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCA 176
Query: 259 GYAEGKRDSCQGDSGGPL 276
G A+G++DSC+GD+GGPL
Sbjct: 177 GDAKGQKDSCKGDAGGPL 194
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 13 VAGWGRLD--ERKPTANSLRKVEVPILSEEECKSAGYSASR--ITNNMLCAGYAEGKRDS 68
V GWG D +P +++LR+V V +LS + C S Y IT +M+CAG A+G++DS
Sbjct: 127 VTGWGATDPDSLRP-SDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDS 185
Query: 69 CQGDSGGPL 77
C+GD+GGPL
Sbjct: 186 CKGDAGGPL 194
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 99/212 (46%), Gaps = 35/212 (16%)
Query: 92 CGQVERNQ--RIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCI--EGVN 147
CG R RI GG K +FPW L G GA L+ VLTAAH + + +
Sbjct: 76 CGLSARTTGGRIYGGQKAKPGDFPW-QVLILGGTTAAGA-LLYDNWVLTAAHAVYEQKHD 133
Query: 148 PKEIKVTLGEHDRLSKNESVPVIIRKVKRAIR-HPDFSL-SNFNNDIALLEMESGVDFEA 205
+ + +G RLS P + A+ H ++ + F+NDIAL+++ + V +
Sbjct: 134 ASALDIRMGTLKRLS-----PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINS 188
Query: 206 PQIHPACLP-----------------GNSLDERKPTANSLRKVEVPILSEEECKSAG--- 245
I P CLP G L +R A +L V++PI+ ++C +A
Sbjct: 189 -NITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKP 247
Query: 246 -YSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
Y +T NMLCAG G +DSC+GDSGG L
Sbjct: 248 PYPRGSVTANMLCAGLESGGKDSCRGDSGGAL 279
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAG----YSASRITNNMLCAGYA 62
T IG +GWG L +R A +L V++PI+ ++C +A Y +T NMLCAG
Sbjct: 206 TDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLE 264
Query: 63 EGKRDSCQGDSGGPLQIAVARPGKMEV---IACGQVERNQRIVGGNVTKLHEF-PWI 115
G +DSC+GDSGG L + + V ++ G + + G TK+ + PWI
Sbjct: 265 SGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 321
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 95/222 (42%), Gaps = 38/222 (17%)
Query: 91 ACGQVERNQ---RIVGGNVTKLHEFPWIAALTKKGK------FYCGATLIAKRHVLTAAH 141
CG + +Q RI GG + PW AA+ K + F CG LI+ +L+AAH
Sbjct: 1 TCGLRQYSQPQFRIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAH 60
Query: 142 CI-EGVNPKEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESG 200
C E P + V LG R+ E +V++ I H +F ++NDIALL+++S
Sbjct: 61 CFQERFPPHHLTVILGRTYRVVPGEEEQKF--EVEKYIVHKEFDDDTYDNDIALLQLKSD 118
Query: 201 VDF---EAPQIHPACLPGNSLDERKPT-----------------ANSLRKVEVPILSEEE 240
E+ + CLP L T + L++ V +
Sbjct: 119 SSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSR 178
Query: 241 CKSAGYSASRITNNMLCAGYAEGK------RDSCQGDSGGPL 276
C S +T+NMLCAG D+CQGDSGGPL
Sbjct: 179 CTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPL 220
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 22/118 (18%)
Query: 13 VAGWGRLDERKP-TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK------ 65
++G+G+ + P + L++ V + C S +T+NMLCAG
Sbjct: 149 LSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANL 208
Query: 66 RDSCQGDSGGPLQIAVARPGKMEVI-------ACGQVERNQRIVGGNVTKLHEF-PWI 115
D+CQGDSGGPL G+M ++ CGQ + V G TK+ + WI
Sbjct: 209 HDACQGDSGGPL--VCLNDGRMTLVGIISWGLGCGQKD-----VPGVYTKVTNYLDWI 259
>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1EAI|B Chain B, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1C1M|A Chain A, Porcine Elastase Under Xenon Pressure (8 Bar)
pdb|1HV7|A Chain A, Porcine Pancreatic Elastase Complexed With Gw311616a
pdb|1FZZ|A Chain A, The Crystal Structure Of The Complex Of Non-Peptidic
Inhibitor Ono-6818 And Porcine Pancreatic Elastase.
pdb|1GWA|A Chain A, Triiodide Derivative Of Porcine Pancreas Elastase
pdb|1L0Z|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Dry Paraffin
Oil
pdb|1L1G|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Glycerol
pdb|1LKA|A Chain A, Porcine Pancreatic ElastaseCA-Complex
pdb|1LKB|A Chain A, Porcine Pancreatic Elastase/na-complex
pdb|1MMJ|N Chain N, Porcine Pancreatic Elastase Complexed With A Potent
Peptidyl Inhibitor, Fr136706
pdb|1MCV|A Chain A, Crystal Structure Analysis Of A Hybrid Squash Inhibitor In
Complex With Porcine Pancreatic Elastase
pdb|1UO6|A Chain A, Porcine Pancreatic ElastaseXE-Complex
pdb|1UVO|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(crystal A)
pdb|1UVP|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(Crystal B)
pdb|2A7C|A Chain A, On The Routine Use Of Soft X-rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2A7J|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2BLO|A Chain A, Elastase Before A High Dose X-Ray "burn"
pdb|2BLQ|A Chain A, Elastase After A High Dose X-Ray "burn"
pdb|2D26|C Chain C, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
pdb|2CV3|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With A Macroclyclic Peptide Inhibitor
pdb|2DE8|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With A
Unique Conformation Induced By Tris
pdb|2DE9|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With Tris After Soaking A Tris-Free Solution
pdb|2G4T|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastase (na)
pdb|2G4U|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastaase
(ca)
pdb|2OQU|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1QNJ|A Chain A, The Structure Of Native Porcine Pancreatic Elastase At
Atomic Resolution (1.1 A)
pdb|2IOT|A Chain A, Clavulanic Acid Bound To Elastase
pdb|2V0B|A Chain A, Sad Structure Solution Porcine Pancreatic Elastase From A
Selenate Derivative
pdb|2V35|A Chain A, Porcine Pancreatic Elastase In Complex With Inhibitor Jm54
pdb|3HGP|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By High
Resolution Crystallography
pdb|3HGN|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By Neutron
Crystallography
pdb|3UOU|A Chain A, Crystal Structure Of The Kunitz-Type Protease Inhibitor
Shpi-1 Lys13leu Mutant In Complex With Pancreatic
Elastase
Length = 240
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 28/202 (13%)
Query: 101 IVGGNVTKLHEFP-WIAALTKKGKFY---CGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
+VGG + + +P I+ + G + CG TLI + V+TAAHC++ +V +G
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD--RELTFRVVVG 58
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVDFEAPQIHPACLP 214
EH+ L++N+ + V++ + HP ++ + DIALL + V + + LP
Sbjct: 59 EHN-LNQNDGTEQYV-GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNS-YVQLGVLP 115
Query: 215 --GNSLDERKP--------------TANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
G L P A +L++ +P + C S+ Y S + N+M+CA
Sbjct: 116 RAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCA 175
Query: 259 GYAEGKRDSCQGDSGGPLQIAV 280
G +G R CQGDSGGPL V
Sbjct: 176 G-GDGVRSGCQGDSGGPLHCLV 196
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+ GWG A +L++ +P + C S+ Y S + N+M+CAG +G R CQGD
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGD 187
Query: 73 SGGPLQIAV 81
SGGPL V
Sbjct: 188 SGGPLHCLV 196
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 92/194 (47%), Gaps = 32/194 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD- 159
+V G P+ AAL G CG LI VLTAAHC + ++V LG+H+
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKK----PNLQVFLGKHNL 56
Query: 160 --RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP--- 214
R S E V+ RA+ HPD+ ++ + DI LL + + I P L
Sbjct: 57 RQRESSQEQSSVV-----RAVIHPDYDAASHDQDIMLLRLARPAKL-SELIQPLPLERDC 110
Query: 215 ------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE 262
G + D P ++++ + ++S EEC+ A +IT NMLCAG +
Sbjct: 111 SANTTSCHILGWGKTADGDFP--DTIQCAYIHLVSREECEHA--YPGQITQNMLCAGDEK 166
Query: 263 GKRDSCQGDSGGPL 276
+DSCQGDSGGPL
Sbjct: 167 YGKDSCQGDSGGPL 180
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+ GWG+ + ++++ + ++S EEC+ A +IT NMLCAG + +DSCQGD
Sbjct: 119 ILGWGKTADGD-FPDTIQCAYIHLVSREECEHA--YPGQITQNMLCAGDEKYGKDSCQGD 175
Query: 73 SGGPL 77
SGGPL
Sbjct: 176 SGGPL 180
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 33/189 (17%)
Query: 113 PWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNESVPVIIR 172
PW A+ + K+ CG L+ + VLTAAHC + +V LG+++ L S R
Sbjct: 16 PWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYN----DKYQVWLGKNNFLEDEPS--DQHR 69
Query: 173 KVKRAIRHPDFSLS-----------NFNNDIALLEMESGVDF-----------EAPQIHP 210
V +AI HPDF++S +++ND+ LL + D E P++
Sbjct: 70 LVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGS 129
Query: 211 ACLP---GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDS 267
CL G++ + + L+ V + +L E+C A ++T+ MLCAG +G +
Sbjct: 130 TCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKA--HEMKVTDAMLCAGEMDGGSYT 187
Query: 268 CQGDSGGPL 276
C+ DSGGPL
Sbjct: 188 CEHDSGGPL 196
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 8 GKIGIVAGWGRLDERK-PTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G + +GWG K + L+ V + +L E+C A ++T+ MLCAG +G
Sbjct: 128 GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKA--HEMKVTDAMLCAGEMDGGS 185
Query: 67 DSCQGDSGGPL 77
+C+ DSGGPL
Sbjct: 186 YTCEHDSGGPL 196
>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 At Ph 5
pdb|1HAY|B Chain B, Snapshots Of Serine Protease Catalysis: (B) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 10 Seconds
pdb|1HB0|B Chain B, Snapshots Of Serine Protease Catalysis: (D) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 2 Minutes
Length = 240
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 101 IVGGNVTKLHEFP-WIAALTKKGKFY---CGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
+VGG + + +P I+ + G + CG TLI + V+TAAHC++ +V +G
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD--RELTFRVVVG 58
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVDFEAPQIHPACLP 214
EH+ L++N + V++ + HP ++ + DIALL + V + + LP
Sbjct: 59 EHN-LNQNNGTEQYV-GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNS-YVQLGVLP 115
Query: 215 --GNSLDERKP--------------TANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
G L P A +L++ +P + C S+ Y S + N+M+CA
Sbjct: 116 RAGTILRNNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCA 175
Query: 259 GYAEGKRDSCQGDSGGPLQIAV 280
G +G R CQGDSGGPL V
Sbjct: 176 G-GDGVRSGCQGDSGGPLHCLV 196
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+ GWG A +L++ +P + C S+ Y S + N+M+CAG +G R CQGD
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGD 187
Query: 73 SGGPLQIAV 81
SGGPL V
Sbjct: 188 SGGPLHCLV 196
>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar
Spermatozoa
Length = 263
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 98/207 (47%), Gaps = 33/207 (15%)
Query: 101 IVGGNVTKLHEFPWIAAL------TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEI--- 151
+VGG + +PW+ +L + CG L+ VLTAAHC + N K++
Sbjct: 1 VVGGMSAEPGAWPWMVSLQIFMYHNNRRYHTCGGILLNSHWVLTAAHCFK--NKKKVTDW 58
Query: 152 KVTLGEHDRL-SKNESV--PVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQI 208
++ G ++ + N+ V P+ R V+ I H + NDIAL+++ V P I
Sbjct: 59 RLIFGANEVVWGSNKPVKPPLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPC-GPFI 117
Query: 209 HPACLP-----------------GNSLDERKP-TANSLRKVEVPILSEEECKSAGYSASR 250
P CLP L E+ P T+ +L++ V ++ E C S + R
Sbjct: 118 GPGCLPQFKAGPPRAPQTCWVTGWGYLKEKGPRTSPTLQEARVALIDLELCNSTRWYNGR 177
Query: 251 ITNNMLCAGYAEGKRDSCQGDSGGPLQ 277
I + +CAGY GK D+CQGDSGGPL
Sbjct: 178 IRSTNVCAGYPRGKIDTCQGDSGGPLM 204
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 13 VAGWGRLDERKP-TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
V GWG L E+ P T+ +L++ V ++ E C S + RI + +CAGY GK D+CQG
Sbjct: 138 VTGWGYLKEKGPRTSPTLQEARVALIDLELCNSTRWYNGRIRSTNVCAGYPRGKIDTCQG 197
Query: 72 DSGGPLQ 78
DSGGPL
Sbjct: 198 DSGGPLM 204
>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl
Dipeptide Anilide Inhibitor With Elastase
pdb|4EST|E Chain E, Crystal Structure Of The Covalent Complex Formed By A
Peptidyl Alpha, Alpha-Difluoro-Beta-Keto Amide With
Porcine Pancreatic Elastase At 1.78-Angstroms Resolution
pdb|5EST|E Chain E, Crystallographic Analysis Of The Inhibition Of Porcine
Pancreatic Elastase By A Peptidyl Boronic Acid:
Structure Of A Reaction Intermediate
pdb|7EST|E Chain E, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|8EST|E Chain E, Reaction Of Porcine Pancreatic Elastase With 7-substituted
3-alkoxy-4-chloroisocoumarins: Design Of Potent
Inhibitors Using The Crystal Structure Of The Complex
Formed With 4- Chloro-3-ethoxy-7-guanidino-isocoumarin
pdb|1ELA|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELC|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELB|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELD|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1ELE|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1NES|E Chain E, Structure Of The Product Complex Of Acetyl-ala-pro-ala
With Porcine Pancreatic Elastase At 1.65 Angstroms
Resolution
pdb|1BMA|A Chain A, Benzyl Methyl Aminimide Inhibitor Complexed To Porcine
Pancreatic Elastase
pdb|1FLE|E Chain E, Crystal Structure Of Elafin Complexed With Porcine
Pancreatic Elastase
pdb|1B0E|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With Mdl
101,146
pdb|1QGF|A Chain A, Porcine Pancreatic Elastase Complexed With (3r, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One
pdb|1QIX|B Chain B, Porcine Pancreatic Elastase Complexed With Human
Beta-casomorphin-7
pdb|1QR3|E Chain E, Structure Of Porcine Pancreatic Elastase In Complex With
Fr901277, A Novel Macrocyclic Inhibitor Of Elastases At
1.6 Angstrom Resolution
pdb|1E34|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2- One Soaked In Ph 9 Buffer For One Minute
pdb|1E35|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One Soaked In Ph 9 Buffer For Two
Minutes
pdb|1E36|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One
pdb|1E37|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 1 Minute
pdb|1E38|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 2 Minutes
pdb|1HAZ|B Chain B, Snapshots Of Serine Protease Catalysis: (c) Acyl-enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-casomorphin-7 Jumped To Ph 9 For 1 Minute
pdb|1H9L|B Chain B, Porcine Pancreatic Elastase Complexed With
Acetyl-Val-Glu-Pro-Ile-Cooh
pdb|1OKX|A Chain A, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|1OKX|B Chain B, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|2FO9|A Chain A, Structure Of Porcine Pancreatic Elastase In 95% Acetone
pdb|2FOA|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010 %
BENZENE
pdb|2FOB|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010
CYCLOHEXANE
pdb|2FOC|A Chain A, Structure Of Porcine Pancreatic Elastase In 55%
Dimethylformamide
pdb|2FOD|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Ethanol
pdb|2FOE|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Hexane
pdb|2FOF|A Chain A, Structure Of Porcine Pancreatic Elastase In 80%
Isopropanol
pdb|2FOG|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2FOH|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2BD4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin- 7 And Lys-Ser At Ph 5.0
pdb|2BD5|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Lys- Ser At Ph 5 And Immersed In
Ph 9 Buffer For 30 Seconds
pdb|2BD9|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 28 Seconds (2nd Ph Jump)
pdb|2BDC|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile At
Ph 5.0
pdb|2H1U|A Chain A, Porcine Pancreatic Elastase Complexed With Metpheleuglu At
Ph 5.0
pdb|1BTU|A Chain A, Porcine Pancreatic Elastase Complexed With (3s, 4r)-1-
Toluenesulphonyl-3-Ethyl-Azetidin-2-One-4-Carboxylic
Acid
pdb|1EAS|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 3.
Design, Synthesis, X-Ray Crystallographic Analysis, And
Structure-Activity Relationships For A Series Of Orally
Active 3-Amino-6-Phenylpyridin- 2-One Trifluoromethyl
Ketones
pdb|1EAT|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 5.
Design, Synthesis, And X-Ray Crystallography Of A Series
Of Orally Active 5- Amino-Pyrimidin-6-One-Containing
Trifluoromethylketones
pdb|1EAU|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 6.
Design Of A Potent, Intratracheally Active,
Pyridone-Based Trifluoromethyl Ketone
pdb|1ELF|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ELG|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ESA|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|1EST|A Chain A, The Atomic Structure Of Crystalline Porcine Pancreatic
Elastase At 2.5 Angstroms Resolution. Comparisons With
The Structure Of Alpha- Chymotrypsin
pdb|1INC|A Chain A, Crystal Structures Of The Complex Of Porcine Pancreatic
Elastase With Two Valine-Derived Benzoxazinone
Inhibitors
pdb|1JIM|A Chain A, Stereospecific Reaction Of 3-Methoxy-4-Chloro-7-
Aminoisocoumarin With Crystalline Porcine Pancreatic
Elastase
pdb|1LVY|A Chain A, Porcine Elastase
pdb|3EST|A Chain A, Structure Of Native Porcine Pancreatic Elastase At 1.65
Angstroms Resolution
pdb|6EST|A Chain A, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|9EST|A Chain A, Structural Study Of Porcine Pancreatic Elastase Complexed
With 7- Amino-3-(2-Bromoethoxy)-4-Chloroisocoumarin As A
Nonreactivatable Doubly Covalent Enzyme-Inhibitor
Complex
pdb|1GVK|B Chain B, Porcine Pancreatic Elastase Acyl Enzyme At 0.95 A
Resolution
pdb|3E3T|A Chain A, Structure Of Porcine Pancreatic Elastase With The Magic
Triangle I3c
pdb|3MNB|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. First Stage Of
Radiation Damage
pdb|3MNC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Second Stage Of
Radiation Damage
pdb|3MNS|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Third Stage Of
Radiation Damage
pdb|3MNX|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fourth Stage Of
Radiation Damage
pdb|3MO3|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fifth Stage Of
Radiation Damage
pdb|3MO6|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Sixth Stage Of
Radiation Damage
pdb|3MO9|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Seventh Stage Of
Radiation Damage
pdb|3MOC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Eighth Stage Of
Radiation Damage
pdb|3MTY|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. First Step Of Radiation
Damage
pdb|3MU0|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU1|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3MU4|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. First Step Of Radiation
Damage
pdb|3MU5|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU8|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3ODD|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Second Step Of Radiation
Damage
pdb|3ODF|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Second Step Of Radiation
Damage
pdb|2BB4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Asp- Phe At Ph 5.0
pdb|2BD2|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0
pdb|2BD3|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Lys- Ala-nh2 At Ph 5.0
pdb|2BD7|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
pdb|2BD8|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 30 Seconds
pdb|2BDA|A Chain A, Porcine Pancreatic Elastase Complexed With N-Acetyl-Npi
And Ala-Ala At Ph 5.0
pdb|2BDB|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile And
Ala-ala At Ph 5.0
pdb|1ESB|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|4GVU|A Chain A, Lyngbyastatin 7-porcine Pancreatic Elastase Co-crystal
Structure
Length = 240
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 101 IVGGNVTKLHEFP-WIAALTKKGKFY---CGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
+VGG + + +P I+ + G + CG TLI + V+TAAHC++ +V +G
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD--RELTFRVVVG 58
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNF--NNDIALLEMESGVDFEAPQIHPACLP 214
EH+ L++N + V++ + HP ++ + DIALL + V + + LP
Sbjct: 59 EHN-LNQNNGTEQYV-GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNS-YVQLGVLP 115
Query: 215 --GNSLDERKP--------------TANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
G L P A +L++ +P + C S+ Y S + N+M+CA
Sbjct: 116 RAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCA 175
Query: 259 GYAEGKRDSCQGDSGGPLQIAV 280
G +G R CQGDSGGPL V
Sbjct: 176 G-GDGVRSGCQGDSGGPLHCLV 196
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+ GWG A +L++ +P + C S+ Y S + N+M+CAG +G R CQGD
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGD 187
Query: 73 SGGPLQIAV 81
SGGPL V
Sbjct: 188 SGGPLHCLV 196
>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
Proneurosin
Length = 223
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 26/192 (13%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
++V G P+ AAL G CG LI VLTAAHC + ++V LG+H+
Sbjct: 1 KLVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKK----PNLQVFLGKHN 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP----- 214
+ + V RA+ HPD+ ++ + DI LL + + I P L
Sbjct: 57 L--RQQESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKL-SELIQPLPLERDCSA 113
Query: 215 ----------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
G + D P ++++ + ++S EEC+ A +IT NMLCAG +
Sbjct: 114 QTTSCHILGWGKTADGDFP--DTIQCAYIHLVSREECEHA--YPGQITQNMLCAGDEKYG 169
Query: 265 RDSCQGDSGGPL 276
+DSCQGDSGGPL
Sbjct: 170 KDSCQGDSGGPL 181
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+ GWG+ + ++++ + ++S EEC+ A +IT NMLCAG + +DSCQGD
Sbjct: 120 ILGWGKTADGD-FPDTIQCAYIHLVSREECEHA--YPGQITQNMLCAGDEKYGKDSCQGD 176
Query: 73 SGGPL 77
SGGPL
Sbjct: 177 SGGPL 181
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 25/196 (12%)
Query: 101 IVGGNVTKLHEFPWIAAL----TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
+VGG + H +PW +L + CG TLIA VLTAAHCI N + +V +G
Sbjct: 1 VVGGEDARPHSWPWQISLQYLKNDTWRHTCGGTLIASNFVLTAAHCIS--NTRTYRVAVG 58
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP-- 214
+++ ++E + + V H ++ NDIAL+++ V+ + I ACLP
Sbjct: 59 KNNLEVEDEEGSLFV-GVDTIHVHKRWNALLLRNDIALIKLAEHVEL-SDTIQVACLPEK 116
Query: 215 --------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
L P A+ L++ P++ C + R+ M+CAG
Sbjct: 117 DSLLPKDYPCYVTGWGRLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCAG- 175
Query: 261 AEGKRDSCQGDSGGPL 276
+G +C GDSGGPL
Sbjct: 176 GDGVISACNGDSGGPL 191
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWGRL P A+ L++ P++ C + R+ M+CAG +G +C GD
Sbjct: 128 VTGWGRLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCAG-GDGVISACNGD 186
Query: 73 SGGPLQIAVARPGKMEVIA 91
SGGPL + G EV
Sbjct: 187 SGGPLNCQLEN-GSWEVFG 204
>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
Length = 229
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEH 158
+VGG EFP++ L ++ + +CG L A+ VLTAAHC+ G N I T G
Sbjct: 1 VVGGTRAAQGEFPFMVRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVV 60
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPAC------ 212
D S S V +R K ++ P F+ + D AL+++ ++ +I
Sbjct: 61 DLQS---SSAVKVRSTK-VLQAPGFTKETYGKDWALIKLAQPINQPTLKIATTTAYNQGT 116
Query: 213 --LPGNSLD-ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 269
+ G + E L K VP +S+ C+S+ S + N M+CAGY + D+CQ
Sbjct: 117 FTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYDTKQEDTCQ 175
Query: 270 GDSGGPL 276
GDSGGP+
Sbjct: 176 GDSGGPM 182
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
VAGWG E L K VP +S+ C+S+ S + N M+CAGY + D+CQGD
Sbjct: 119 VAGWGANREGGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYDTKQEDTCQGD 177
Query: 73 SGGPL 77
SGGP+
Sbjct: 178 SGGPM 182
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 25/203 (12%)
Query: 94 QVERNQRIVGGNVTKLHEFPWIAALT----KKGKFYCGATLIAKRHVLTAAHCIEGVNPK 149
Q + R+VGG H +PW +L + CG TLI HVLTAAHCI N
Sbjct: 7 QPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCIS--NTL 64
Query: 150 EIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIH 209
+V LG+++ ++E+ + + V H ++ NDIAL+++ V+ I
Sbjct: 65 TYRVALGKNNLEVEDEAGSLYV-GVDTIFVHEKWNSFLVRNDIALIKLAETVEL-GDTIQ 122
Query: 210 PACLPGNS----------------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITN 253
ACLP L P A L++ P++ C + + +
Sbjct: 123 VACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKE 182
Query: 254 NMLCAGYAEGKRDSCQGDSGGPL 276
M+CAG +G +C GDSGGPL
Sbjct: 183 TMVCAG-GDGVISACNGDSGGPL 204
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 12 IVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
V GWGRL P A L++ P++ C + + + M+CAG +G +C G
Sbjct: 140 FVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAG-GDGVISACNG 198
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 199 DSGGPL 204
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 99/212 (46%), Gaps = 35/212 (16%)
Query: 92 CGQVERNQ--RIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCI--EGVN 147
CG R +I GG K +FPW L G GA L+ VLTAAH + + +
Sbjct: 151 CGLSARTTGGQIYGGQKAKPGDFPW-QVLILGGTTAAGA-LLYDNWVLTAAHAVYEQKHD 208
Query: 148 PKEIKVTLGEHDRLSKNESVPVIIRKVKRAIR-HPDFSL-SNFNNDIALLEMESGVDFEA 205
+ + +G RLS P + A+ H ++ + F+NDIAL+++ + V +
Sbjct: 209 ASALDIRMGTLKRLS-----PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINS 263
Query: 206 PQIHPACLP-----------------GNSLDERKPTANSLRKVEVPILSEEECKSAG--- 245
I P CLP G L +R A +L V++PI+ ++C +A
Sbjct: 264 -NITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKP 322
Query: 246 -YSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
Y +T NMLCAG G +DSC+GDSGG L
Sbjct: 323 PYPRGSVTANMLCAGLESGGKDSCRGDSGGAL 354
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAG----YSASRITNNMLCAGYA 62
T IG +GWG L +R A +L V++PI+ ++C +A Y +T NMLCAG
Sbjct: 281 TDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLE 339
Query: 63 EGKRDSCQGDSGGPLQIAVARPGKMEV---IACGQVERNQRIVGGNVTKLHEF-PWI 115
G +DSC+GDSGG L + + V ++ G + + G TK+ + PWI
Sbjct: 340 SGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 396
>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
Length = 224
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 19/186 (10%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 159
+VGG EFP++ L+ CG L A+ VLTAAHC+ G N I T G D
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPAC------- 212
L + +V V KV +A P F+ + D AL+++ ++ +I
Sbjct: 57 -LQSSSAVKVRSTKVLQA---PGFTKETYGKDWALIKLAQPINQPTLKIATTTAYNQGTF 112
Query: 213 -LPGNSLD-ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 270
+ G + E L K VP +S+ C+S+ S + N M+CAGY + D+CQG
Sbjct: 113 TVAGWGANREGGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYDTKQEDTCQG 171
Query: 271 DSGGPL 276
DSGGP+
Sbjct: 172 DSGGPM 177
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
VAGWG E L K VP +S+ C+S+ S + N M+CAGY + D+CQGD
Sbjct: 114 VAGWGANREGGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYDTKQEDTCQGD 172
Query: 73 SGGPL 77
SGGP+
Sbjct: 173 SGGPM 177
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 95/201 (47%), Gaps = 33/201 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCI--EGVNPKEIKVTLGEH 158
I GG K +FPW L G GA L+ VLTAAH + + + + + +G
Sbjct: 1 IYGGQKAKPGDFPW-QVLILGGTTAAGA-LLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58
Query: 159 DRLSKNESVPVIIRKVKRAIR-HPDFSL-SNFNNDIALLEMESGVDFEAPQIHPACLP-- 214
RLS P + A+ H ++ + F+NDIAL+++ + V + I P CLP
Sbjct: 59 KRLS-----PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINS-NITPICLPRK 112
Query: 215 ---------------GNSLDERKPTANSLRKVEVPILSEEECKSAG----YSASRITNNM 255
G L +R A +L V++PI+ ++C +A Y +T NM
Sbjct: 113 EAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANM 172
Query: 256 LCAGYAEGKRDSCQGDSGGPL 276
LCAG G +DSC+GDSGG L
Sbjct: 173 LCAGLESGGKDSCRGDSGGAL 193
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAG----YSASRITNNMLCAGYA 62
T IG +GWG L +R A +L V++PI+ ++C +A Y +T NMLCAG
Sbjct: 120 TDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLE 178
Query: 63 EGKRDSCQGDSGGPLQIAVARPGKMEV---IACGQVERNQRIVGGNVTKLHEF-PWI 115
G +DSC+GDSGG L + + V ++ G + + G TK+ + PWI
Sbjct: 179 SGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 31/205 (15%)
Query: 101 IVGGNVTKLHEFPWIAAL------TKKGKFYCGATLIAKRHVLTAAHCIEGVNPK--EIK 152
I+GG +PW+ +L + CG +L+ + +LTAAHC + K + +
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFR-IKKKVTDWR 59
Query: 153 VTLGEHD-RLSKNESV--PVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIH 209
+ G + N+ V P+ R V++ I H +S S+ NDIAL+++ V I
Sbjct: 60 LIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTC-GHFIG 118
Query: 210 PACLP------------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
P CLP G + + T+ L++ V ++ C S + RI
Sbjct: 119 PGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRI 178
Query: 252 TNNMLCAGYAEGKRDSCQGDSGGPL 276
+ +CAGY EGK D+CQGDSGGPL
Sbjct: 179 RSTNVCAGYPEGKIDTCQGDSGGPL 203
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 13 VAGWGRLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQG 71
VAGWG L E + T+ L++ V ++ C S + RI + +CAGY EGK D+CQG
Sbjct: 138 VAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQG 197
Query: 72 DSGGPL 77
DSGGPL
Sbjct: 198 DSGGPL 203
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 96/198 (48%), Gaps = 33/198 (16%)
Query: 101 IVGGNVTKLHEFPWIAALT---KKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 157
I+GG+ K H P++A L +K CG LI VLTAAHC I VTLG
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHCWGS----SINVTLGA 56
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
H+ + + E I VKR I HP ++ NF+NDI LL++E + P LP N
Sbjct: 57 HN-IKEQEPTQQFI-PVKRPIPHPAYNPKNFSNDIMLLQLERKAK-RTRAVQPLRLPSNK 113
Query: 218 LDERKP-----------------TANSLRKVEVPILSEEECKS--AGYSASRITNNMLCA 258
+ KP +++L++V++ + + +C+S Y S I LC
Sbjct: 114 A-QVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIE---LCV 169
Query: 259 GYAEGKRDSCQGDSGGPL 276
G E K+ S +GDSGGPL
Sbjct: 170 GDPEIKKTSFKGDSGGPL 187
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKS--AGYSASRITNNMLCAGYAEGK 65
G+ VAGWG+ +++L++V++ + + +C+S Y S I LC G E K
Sbjct: 119 GQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIE---LCVGDPEIK 175
Query: 66 RDSCQGDSGGPL 77
+ S +GDSGGPL
Sbjct: 176 KTSFKGDSGGPL 187
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 89/209 (42%), Gaps = 35/209 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK------FYCGATLIAKRHVLTAAHCI-EGVNPKEIKV 153
I GG + PW AA+ K + F CG LI+ +L+AAHC E P + V
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 154 TLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDF---EAPQIHP 210
LG R+ E +V++ I H +F ++NDIALL+++S E+ +
Sbjct: 61 ILGRTYRVVPGEEEQKF--EVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRT 118
Query: 211 ACLPGNSLDERKPT-----------------ANSLRKVEVPILSEEECKSAGYSASRITN 253
CLP L T + L++ V + C S +T+
Sbjct: 119 VCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTD 178
Query: 254 NMLCAGYAEGK------RDSCQGDSGGPL 276
NMLCAG D+CQGDSGGPL
Sbjct: 179 NMLCAGDTRSGGPQANLHDACQGDSGGPL 207
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 22/118 (18%)
Query: 13 VAGWGRLDERKP-TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK------ 65
++G+G+ + P + L++ V + C S +T+NMLCAG
Sbjct: 136 LSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANL 195
Query: 66 RDSCQGDSGGPLQIAVARPGKMEVI-------ACGQVERNQRIVGGNVTKLHEF-PWI 115
D+CQGDSGGPL G+M ++ CGQ + V G TK+ + WI
Sbjct: 196 HDACQGDSGGPL--VCLNDGRMTLVGIISWGLGCGQKD-----VPGVYTKVTNYLDWI 246
>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure
Solution And Refinement At 1.8 Angstroms Resolution
Length = 235
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 37/202 (18%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + + PW A+ + + CG LI V+TAAHC +V LG ++
Sbjct: 1 IVGGYKCEKNSQPWQVAVINE--YLCGGVLIDPSWVITAAHCYS----NNYQVLLGRNN- 53
Query: 161 LSKNESVPVIIRK-VKRAIRHPDF-----------SLSNFNNDIALLEMESGVDF----- 203
L K+E P R+ V+++ RHPD+ + + +ND+ LL + D
Sbjct: 54 LFKDE--PFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVK 111
Query: 204 ------EAPQIHPACLP---GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNN 254
+ P++ CL G++ ++ L+ V + +LS E+C +T+
Sbjct: 112 VIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIET--YKDNVTDV 169
Query: 255 MLCAGYAEGKRDSCQGDSGGPL 276
MLCAG EG +D+C GDSGGPL
Sbjct: 170 MLCAGEMEGGKDTCAGDSGGPL 191
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 8 GKIGIVAGWGRLDERK-PTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G + +GWG + + ++ L+ V + +LS E+C +T+ MLCAG EG +
Sbjct: 123 GSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIET--YKDNVTDVMLCAGEMEGGK 180
Query: 67 DSCQGDSGGPL 77
D+C GDSGGPL
Sbjct: 181 DTCAGDSGGPL 191
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 96/198 (48%), Gaps = 33/198 (16%)
Query: 101 IVGGNVTKLHEFPWIAALT---KKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 157
I+GG+ K H P++A L +K CG LI VLTAAHC I VTLG
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGS----SINVTLGA 56
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
H+ + + E I VKR I HP ++ NF+NDI LL++E + P LP N
Sbjct: 57 HN-IKEQEPTQQFI-PVKRPIPHPAYNPKNFSNDIMLLQLERKAK-RTRAVQPLRLPSNK 113
Query: 218 LDERKP-----------------TANSLRKVEVPILSEEECKS--AGYSASRITNNMLCA 258
+ KP +++L++V++ + + +C+S Y S I LC
Sbjct: 114 A-QVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIE---LCV 169
Query: 259 GYAEGKRDSCQGDSGGPL 276
G E K+ S +GDSGGPL
Sbjct: 170 GDPEIKKTSFKGDSGGPL 187
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKS--AGYSASRITNNMLCAGYAEGK 65
G+ VAGWG+ +++L++V++ + + +C+S Y S I LC G E K
Sbjct: 119 GQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIE---LCVGDPEIK 175
Query: 66 RDSCQGDSGGPL 77
+ S +GDSGGPL
Sbjct: 176 KTSFKGDSGGPL 187
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 107/226 (47%), Gaps = 35/226 (15%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKG-KFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
I+GG + H P++A L T+KG + CG LI+++ VLTAAHC +EI V LG
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHC----KGREITVILG 56
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN 216
HD + K ES I KV++ I H ++ +DI LL++E V+ P ++ LP
Sbjct: 57 AHD-VRKRESTQQKI-KVEKQIIHESYNSVPNLHDIMLLKLEKKVEL-TPAVNVVPLPSP 113
Query: 217 S----------------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 260
S R PT+ +LR+VE+ I+ E+ C Y + +C G
Sbjct: 114 SDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYEYKF---QVCVGS 170
Query: 261 AEGKRDSCQGDSGGPLQIA-----VARPGKMEATLSKVVSRVQETV 301
R + GDSGGPL A + G +A + +RV V
Sbjct: 171 PTTLRAAFMGDSGGPLLCAGVAHGIVSYGHPDAKPPAIFTRVSTYV 216
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 6 YTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 65
+ G + AGWG+ R PT+ +LR+VE+ I+ E+ C Y + +C G
Sbjct: 118 HPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYEYKF---QVCVGSPTTL 174
Query: 66 RDSCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFPWIAAL 118
R + GDSGGPL A G +++ G + + V+ PWI A+
Sbjct: 175 RAAFMGDSGGPLLCAGVAHG---IVSYGHPDAKPPAIFTRVSTY--VPWINAV 222
>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
Para-Amidobenzylanmine P1 Group Carry A High Binding
Efficiency
pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
Kallikrein 6 Inhibitors With An Amidinothiophene P1
Group
Length = 223
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 26/191 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
+V G P+ AAL G CG LI VLTAAHC + ++V LG+H+
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKK----PNLQVFLGKHNL 56
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
+ V RA+ HPD+ ++ + DI LL + + I P L
Sbjct: 57 --GQQESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKL-SELIQPLPLERDCSAQ 113
Query: 215 ---------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
G + D P ++++ + ++S EEC+ A +IT NMLCAG + +
Sbjct: 114 TTSCHILGWGKTADGDFP--DTIQCAYIHLVSREECEHA--YPGQITQNMLCAGDEKYGK 169
Query: 266 DSCQGDSGGPL 276
DSCQGDSGGPL
Sbjct: 170 DSCQGDSGGPL 180
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+ GWG+ + ++++ + ++S EEC+ A +IT NMLCAG + +DSCQGD
Sbjct: 119 ILGWGKTADGD-FPDTIQCAYIHLVSREECEHA--YPGQITQNMLCAGDEKYGKDSCQGD 175
Query: 73 SGGPL 77
SGGPL
Sbjct: 176 SGGPL 180
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 33/201 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCI--EGVNPKEIKVTLGEH 158
I GG K +FPW L G GA L+ VLTAAH + + + + + +G
Sbjct: 1 IYGGQKAKPGDFPW-QVLILGGTTAAGA-LLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58
Query: 159 DRLSKNESVPVIIRKVKRAIR-HPDFSL-SNFNNDIALLEMESGVDFEAPQIHPACLP-- 214
RLS P + A+ H ++ + F+NDIAL+++ + V + I P CLP
Sbjct: 59 KRLS-----PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINS-NITPICLPRK 112
Query: 215 ---------------GNSLDERKPTANSLRKVEVPILSEEECKSAG----YSASRITNNM 255
G L +R A +L V++PI+ ++C +A Y +T NM
Sbjct: 113 EAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANM 172
Query: 256 LCAGYAEGKRDSCQGDSGGPL 276
LCAG G +DSC+GD+GG L
Sbjct: 173 LCAGLESGGKDSCRGDAGGAL 193
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Query: 7 TGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAG----YSASRITNNMLCAGYA 62
T IG +GWG L +R A +L V++PI+ ++C +A Y +T NMLCAG
Sbjct: 120 TDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLE 178
Query: 63 EGKRDSCQGDSGGPLQIAVARPGKMEV---IACGQVERNQRIVGGNVTKLHEF-PWI 115
G +DSC+GD+GG L + + V ++ G + + G TK+ + PWI
Sbjct: 179 SGGKDSCRGDAGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235
>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt
Length = 230
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 101 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEH 158
+VGG EFP++ L ++ + +CG L A+ VLTAAHC+ G N I T G
Sbjct: 1 VVGGTRAAQGEFPFMVRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVV 60
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPA------- 211
D L + +V V KV +A P F+ + D AL+++ ++ +I
Sbjct: 61 D-LQSSSAVKVRSTKVLQA---PGFTKETYGKDWALIKLAQPINQPTLKIATTTAYNQGT 116
Query: 212 -CLPGNSLD-ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE-GKRDSC 268
+ G + E L K VP +S+ C+S+ S + N M+CAGY + G D+C
Sbjct: 117 FTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYPDTGGVDTC 175
Query: 269 QGDSGGPL 276
QGDSGGP+
Sbjct: 176 QGDSGGPM 183
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE-GKRDSCQG 71
VAGWG E L K VP +S+ C+S+ S + N M+CAGY + G D+CQG
Sbjct: 119 VAGWGANREGGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYPDTGGVDTCQG 177
Query: 72 DSGGPL 77
DSGGP+
Sbjct: 178 DSGGPM 183
>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|B Chain B, Fiddler Crab Collagenase Complexed To Ecotin
Length = 226
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 24/192 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + +P AAL ++CG +LI+ +LTAAHC++G + V LG H+
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAG--FVDVVLGAHN- 57
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSL-- 218
+ ++E+ V I+ + H +++ +NDIA++ + V A I LP +
Sbjct: 58 IREDEATQVTIQSTDFTV-HENYNSFVISNDIAVIRLPVPVTLTA-AIATVGLPSTDVGV 115
Query: 219 -------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
D ++ LR+V+VPI+S +C + +T+ +C + G +
Sbjct: 116 GTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAV---YGIVTDGNICID-STGGK 171
Query: 266 DSCQGDSGGPLQ 277
+C GDSGGPL
Sbjct: 172 GTCNGDSGGPLN 183
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 15 GWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDS 73
GWG D ++ LR+V+VPI+S +C + +T+ +C + G + +C GDS
Sbjct: 123 GWGLPSDSALGISDVLRQVDVPIMSNADCDAV---YGIVTDGNICID-STGGKGTCNGDS 178
Query: 74 GGPLQ 78
GGPL
Sbjct: 179 GGPLN 183
>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M
pdb|2ZGH|A Chain A, Crystal Structure Of Active Granzyme M Bound To Its
Product
pdb|2ZKS|A Chain A, Structural Insights Into The Proteolytic Machinery Of
Apoptosis- Inducing Granzyme M
Length = 240
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 27/214 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GG H P++A+L + G CG L+ + VLTAAHC+ ++++ LG H
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ-RMAQLRLVLGLHTL 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFS-LSNFNNDIALLEMESGVDFEAPQIHPACLP----- 214
S P + +K AI+HP + + ND+ALL+++ V + I P LP
Sbjct: 60 DS-----PGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVK-PSRTIRPLALPSKRQV 113
Query: 215 ----------GNSLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEG 263
G L + + LR++++ +L C ++ + ++ +M+C
Sbjct: 114 VAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSK 173
Query: 264 KRDSCQGDSGGPLQIAVARPGKMEATLSKVVSRV 297
+ C+GDSGGPL V G++ A + SRV
Sbjct: 174 DQAPCKGDSGGPL---VCGKGRVLAGVLSFSSRV 204
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+AGWG + + LR++++ +L C ++ + ++ +M+C + C+GD
Sbjct: 122 MAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGD 181
Query: 73 SGGPL 77
SGGPL
Sbjct: 182 SGGPL 186
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 101 IVGGNVTKLHEFPWIAA--LTKKG--KFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
I+GGN H P++A K G K +CG L+ + VLTAAHC + + VTLG
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHC----KGRSMTVTLG 56
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVD-------FEAPQIH 209
H+ +K E+ +I V +AI HPD++ + +NDI LL++ P+ +
Sbjct: 57 AHNIKAKEETQQII--PVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRN 114
Query: 210 PACLPGN----------SLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
PG+ + D P +L +V++ + ++ C+S + +S N +C G
Sbjct: 115 AHVKPGDECYVAGWGKVTPDGEFP--KTLHEVKLTVQKDQVCESQ-FQSSYNRANEICVG 171
Query: 260 YAEGKRDSCQGDSGGPL-----QIAVARPGKMEATLSKVVSRVQETV 301
++ K S +GDSGGPL + G+ + + +V +RV V
Sbjct: 172 DSKIKGASFRGDSGGPLVCKRAAAGIVSYGQTDGSAPQVFTRVLSFV 218
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
VAGWG++ +L +V++ + ++ C+S + +S N +C G ++ K S +GD
Sbjct: 125 VAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQ-FQSSYNRANEICVGDSKIKGASFRGD 183
Query: 73 SGGPLQIAVARPGKMEVIACGQVE 96
SGGPL A G +++ GQ +
Sbjct: 184 SGGPLVCKRAAAG---IVSYGQTD 204
>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|B Chain B, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 228
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 28/196 (14%)
Query: 101 IVGGNVTKLHEFPWIAALT----KKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
I+GG+ K H P++A L G CG LI + VLTAAHC + +I+VTLG
Sbjct: 1 IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHC----SGSKIQVTLG 56
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVD-------FEAPQIH 209
H+ + + E + II VK I HP ++ +NDI LL+++S P+ +
Sbjct: 57 AHN-IKEQEKMQQIIPVVK-IIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRN 114
Query: 210 PACLPGN--------SLDERKPTANSLRKVEVPILSEEECKSAGYSASRITN-NMLCAGY 260
PG+ L +++L++VE+ + +++C+S Y + N +CAG
Sbjct: 115 VKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCES--YLKNYFDKANEICAGD 172
Query: 261 AEGKRDSCQGDSGGPL 276
+ KR S +GDSGGPL
Sbjct: 173 PKIKRASFRGDSGGPL 188
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITN-NMLCAGYAEGKR 66
G + VAGWG+L +++L++VE+ + +++C+S Y + N +CAG + KR
Sbjct: 120 GDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCES--YLKNYFDKANEICAGDPKIKR 177
Query: 67 DSCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWIAALTKK 121
S +GDSGGPL V + +++ GQ N TK+ F WI KK
Sbjct: 178 ASFRGDSGGPL---VCKKVAAGIVSYGQ---NDGSTPRAFTKVSTFLSWIKKTMKK 227
>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The
Molecular Determinants Of Substrate Specificity
Length = 234
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 30/197 (15%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GGN H P++ L+ K C LIAK VLTAAHC +N K +V LG H
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHC--NLN-KRSQVILGAHS- 56
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEM--ESGVDFEAPQIHPACLPGNSL 218
+++ E I+ VK+ +P + + D+ LL++ ++ ++ +H LP
Sbjct: 57 ITREEPTKQIML-VKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILH---LPKKG- 111
Query: 219 DERKP-----------------TANSLRKVEVPILSEEECKSAGYSASR--ITNNMLCAG 259
D+ KP +++LR+VE+ I+ + C + I NM+CAG
Sbjct: 112 DDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAG 171
Query: 260 YAEGKRDSCQGDSGGPL 276
G RDSC GDSG PL
Sbjct: 172 SLRGGRDSCNGDSGSPL 188
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASR--ITNNMLCAGYAEGK 65
G + VAGWGR +++LR+VE+ I+ + C + I NM+CAG G
Sbjct: 117 GTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGG 176
Query: 66 RDSCQGDSGGPL 77
RDSC GDSG PL
Sbjct: 177 RDSCNGDSGSPL 188
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 30/196 (15%)
Query: 101 IVGGNVTKLHEFPWIAA---LTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 157
I+GG+ K H P++A L +K + CG L+ K VLTAAHC I VTLG
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC----QGSSINVTLGA 56
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
H+ + + E I VKR I HP ++ NF+NDI LL++E + + P LP +S
Sbjct: 57 HN-IKEQERTQQFI-PVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTT-AVRPLRLP-SS 112
Query: 218 LDERKP----------------TANSLRKVEVPILSEEECKSAGY-SASRITNNMLCAGY 260
+ KP A +L++V + + + +C+ + + SR T +C G
Sbjct: 113 KAQVKPGQLCSVAGWGYVSMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATE--ICVGD 170
Query: 261 AEGKRDSCQGDSGGPL 276
+ + +GDSGGPL
Sbjct: 171 PKKTQTGFKGDSGGPL 186
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGY-SASRITNNMLCAGYAEGKR 66
G++ VAGWG + A +L++V + + + +C+ + + SR T +C G + +
Sbjct: 119 GQLCSVAGWGYVSMST-LATTLQEVLLTVQKDCQCERLFHGNYSRATE--ICVGDPKKTQ 175
Query: 67 DSCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFPWIAALTKK 121
+GDSGGPL V + +++ G + G + H PWI K+
Sbjct: 176 TGFKGDSGGPL---VCKDVAQGILSYG--NKKGTPPGVYIKVSHFLPWIKRTMKR 225
>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal
Synthesized Substrate
Length = 240
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 27/214 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GG H P++A+L + G CG L+ + VLTAAHC+ ++++ LG H
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ-RMAQLRLVLGLHTL 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFS-LSNFNNDIALLEMESGVDFEAPQIHPACLP----- 214
S P + +K AI+HP + + N++ALL+++ V + I P LP
Sbjct: 60 DS-----PGLTFHIKAAIQHPRYKPVPALENNLALLQLDGKVK-PSRTIRPLALPSKRQV 113
Query: 215 ----------GNSLDER-KPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEG 263
G L + + LR++++ +L C ++ + ++ +M+C
Sbjct: 114 VAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSK 173
Query: 264 KRDSCQGDSGGPLQIAVARPGKMEATLSKVVSRV 297
+ C+GDSGGPL V G++ A + SRV
Sbjct: 174 DQAPCKGDSGGPL---VCGKGRVLAGVLSFSSRV 204
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+AGWG + + LR++++ +L C ++ + ++ +M+C + C+GD
Sbjct: 122 MAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGD 181
Query: 73 SGGPL 77
SGGPL
Sbjct: 182 SGGPL 186
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 84/183 (45%), Gaps = 15/183 (8%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 159
+VGG EFP++ L+ CG L A+ VLTAAHC+ G N I T G D
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 160 RLSKNESVPVIIRKVKRAIRH----PDFSLSNFNNDI--ALLEMESGVDFEAPQIHPACL 213
L + +V V KV +A + D++L I L++ + + A
Sbjct: 57 -LQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGW 115
Query: 214 PGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSG 273
N E L K VP +S+ C+SA Y + N +CAGY G D+CQGDSG
Sbjct: 116 GANR--EGGSQQRYLLKANVPFVSDAACRSA-YGNELVANEEICAGYDTGGVDTCQGDSG 172
Query: 274 GPL 276
GP+
Sbjct: 173 GPM 175
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
VAGWG E L K VP +S+ C+SA Y + N +CAGY G D+CQGD
Sbjct: 112 VAGWGANREGGSQQRYLLKANVPFVSDAACRSA-YGNELVANEEICAGYDTGGVDTCQGD 170
Query: 73 SGGPL 77
SGGP+
Sbjct: 171 SGGPM 175
>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXG|B Chain B, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXH|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXI|A Chain A, High Resolution Structure Of Human Kallikrein 7 In Complex
With Suc-Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXJ|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-ala-pro-phe-chloromethylketone And Copper
Length = 224
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 24/190 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+ G PW AL + +CG L+ +R VLTAAHC E V LG D
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHC----KMNEYTVHLGS-DT 55
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAP----QIHPACLP-- 214
L + + K ++ RHP +S ND+ L+++ S + ++ C P
Sbjct: 56 LGDRRAQRI---KASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPG 112
Query: 215 --------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 266
G + + L V+V ++S ++C + N+MLCAG + K++
Sbjct: 113 TTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV--YKDLLENSMLCAGIPDSKKN 170
Query: 267 SCQGDSGGPL 276
+C GDSGGPL
Sbjct: 171 ACNGDSGGPL 180
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 8 GKIGIVAGWGRLDERKPTANS-LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G V+GWG T S L V+V ++S ++C + N+MLCAG + K+
Sbjct: 112 GTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV--YKDLLENSMLCAGIPDSKK 169
Query: 67 DSCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFP-WIAALTKK 121
++C GDSGGPL V R +++ G Q G T++ +F WI KK
Sbjct: 170 NACNGDSGGPL---VCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKK 222
>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|B Chain B, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|C Chain C, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
Length = 227
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 24/190 (12%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+ G PW AL + +CG L+ +R VLTAAHC E V LG D
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHC----KMNEYTVHLGS-DT 55
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAP----QIHPACLP-- 214
L + + K ++ RHP +S ND+ L+++ S + ++ C P
Sbjct: 56 LGDRRAQRI---KASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPG 112
Query: 215 --------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 266
G + + L V+V ++S ++C + N+MLCAG + K++
Sbjct: 113 TTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV--YKDLLENSMLCAGIPDSKKN 170
Query: 267 SCQGDSGGPL 276
+C GDSGGPL
Sbjct: 171 ACNGDSGGPL 180
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 8 GKIGIVAGWGRLDERKPTANS-LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G V+GWG T S L V+V ++S ++C + N+MLCAG + K+
Sbjct: 112 GTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV--YKDLLENSMLCAGIPDSKK 169
Query: 67 DSCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFP-WI 115
++C GDSGGPL V R +++ G Q G T++ +F WI
Sbjct: 170 NACNGDSGGPL---VCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWI 216
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 35/202 (17%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
+VGG + + PW A+ + + CG L+ + VLTAAHC + +V LG++
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYV----DQYEVWLGKNKL 56
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLS-----------NFNNDIALLEMESGVDFEAPQIH 209
+ S R V ++ HP F++S +F++D+ LL + D +
Sbjct: 57 FQEEPSAQH--RLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITD-VVK 113
Query: 210 PACLP---------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNN 254
P LP G+ R + L+ V + +L E C A ++T+
Sbjct: 114 PIALPTKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENC--AKVYLQKVTDV 171
Query: 255 MLCAGYAEGKRDSCQGDSGGPL 276
MLCAG G +D+C+ DSGGPL
Sbjct: 172 MLCAGEMGGGKDTCRDDSGGPL 193
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 12 IVAGWGRLD-ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+ +GWG + R + L+ V + +L E C A ++T+ MLCAG G +D+C+
Sbjct: 129 LASGWGSITPTRWQKPDDLQCVFITLLPNENC--AKVYLQKVTDVMLCAGEMGGGKDTCR 186
Query: 71 GDSGGPL 77
DSGGPL
Sbjct: 187 DDSGGPL 193
>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|2ZCK|P Chain P, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|3QUM|P Chain P, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|Q Chain Q, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 237
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 86/201 (42%), Gaps = 33/201 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + H PW + +G+ CG L+ + VLTAAHCI + + LG H
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIR----NKSVILLGRHSL 56
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNN-----------DIALLEMESGVDF------ 203
++ V +V + HP + +S N D+ LL + +
Sbjct: 57 FHPEDTGQVF--QVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKV 114
Query: 204 -----EAPQIHPACLP---GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNM 255
+ P + C G+ E T L+ V++ ++S + C A ++T M
Sbjct: 115 MDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVC--AQVHPQKVTKFM 172
Query: 256 LCAGYAEGKRDSCQGDSGGPL 276
LCAG G + +C GDSGGPL
Sbjct: 173 LCAGRWTGGKSTCSGDSGGPL 193
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 8 GKIGIVAGWGRLD-ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G +GWG ++ E T L+ V++ ++S + C A ++T MLCAG G +
Sbjct: 125 GTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVC--AQVHPQKVTKFMLCAGRWTGGK 182
Query: 67 DSCQGDSGGPL 77
+C GDSGGPL
Sbjct: 183 STCSGDSGGPL 193
>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A
pdb|1OP8|B Chain B, Crystal Structure Of Human Granzyme A
pdb|1OP8|C Chain C, Crystal Structure Of Human Granzyme A
pdb|1OP8|D Chain D, Crystal Structure Of Human Granzyme A
pdb|1OP8|E Chain E, Crystal Structure Of Human Granzyme A
pdb|1OP8|F Chain F, Crystal Structure Of Human Granzyme A
Length = 234
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GGN H P++ L+ K C LIAK VLTAAHC +N K +V LG H
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHC--NLN-KRSQVILGAHS- 56
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEM--ESGVDFEAPQIHPACLPGNSL 218
+++ E I+ VK+ +P + + D+ LL++ ++ ++ +H LP
Sbjct: 57 ITREEPTKQIML-VKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILH---LPKKG- 111
Query: 219 DERKP-----------------TANSLRKVEVPILSEEECKSAGYSASR--ITNNMLCAG 259
D+ KP +++LR+V + I+ + C + I NM+CAG
Sbjct: 112 DDVKPGTMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVCAG 171
Query: 260 YAEGKRDSCQGDSGGPL 276
G RDSC GDSG PL
Sbjct: 172 SLRGGRDSCNGDSGSPL 188
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASR--ITNNMLCAGYAEGK 65
G + VAGWGR +++LR+V + I+ + C + I NM+CAG G
Sbjct: 117 GTMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGG 176
Query: 66 RDSCQGDSGGPL 77
RDSC GDSG PL
Sbjct: 177 RDSCNGDSGSPL 188
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 30/196 (15%)
Query: 101 IVGGNVTKLHEFPWIAA---LTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 157
I+GG+ K H P++A L +K + CG L+ K VLTAAHC +G I VTLG
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC-QG---SSINVTLGA 56
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS 217
H+ + + E I VKR I HP ++ NF+N+I LL++E + + P LP +S
Sbjct: 57 HN-IKEQERTQQFI-PVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTT-AVRPLRLP-SS 112
Query: 218 LDERKP----------------TANSLRKVEVPILSEEECKSAGY-SASRITNNMLCAGY 260
+ KP A +L++V + + + +C+ + + SR T +C G
Sbjct: 113 KAQVKPGQLCSVAGWGYVSMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATE--ICVGD 170
Query: 261 AEGKRDSCQGDSGGPL 276
+ + +GDSGGPL
Sbjct: 171 PKKTQTGFKGDSGGPL 186
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGY-SASRITNNMLCAGYAEGKR 66
G++ VAGWG + A +L++V + + + +C+ + + SR T +C G + +
Sbjct: 119 GQLCSVAGWGYVSMST-LATTLQEVLLTVQKDCQCERLFHGNYSRATE--ICVGDPKKTQ 175
Query: 67 DSCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFPWIAALTKK 121
+GDSGGPL V + +++ G + G + H PWI K+
Sbjct: 176 TGFKGDSGGPL---VCKDVAQGILSYG--NKKGTPPGVYIKVSHFLPWIKRTMKR 225
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 35/227 (15%)
Query: 101 IVGGNVTKLHEFPWIAA--LTKKG--KFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
I+GGN H P++A K G K +CG L+ + VLTAAHC + + VTLG
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHC----KGRSMTVTLG 56
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVD-------FEAPQIH 209
H+ +K E+ +I V +AI HPD++ + +NDI LL++ P+ +
Sbjct: 57 AHNIKAKEETQQII--PVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRN 114
Query: 210 PACLPGN----------SLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
PG+ + D P +L +V++ + ++ C+S + +S N +C G
Sbjct: 115 AHVKPGDECYVAGWGKVTPDGEFP--KTLHEVKLTVQKDQVCESQ-FQSSYNRANEICVG 171
Query: 260 YAEGKRDSCQGDSGGPL-----QIAVARPGKMEATLSKVVSRVQETV 301
++ K S + DSGGPL + G+ + + +V +RV V
Sbjct: 172 DSKIKGASFEEDSGGPLVCKRAAAGIVSYGQTDGSAPQVFTRVLSFV 218
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
VAGWG++ +L +V++ + ++ C+S + +S N +C G ++ K S + D
Sbjct: 125 VAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQ-FQSSYNRANEICVGDSKIKGASFEED 183
Query: 73 SGGPLQIAVARPGKMEVIACGQVE 96
SGGPL A G +++ GQ +
Sbjct: 184 SGGPLVCKRAAAG---IVSYGQTD 204
>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 253
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 90/208 (43%), Gaps = 31/208 (14%)
Query: 98 NQRIVGGNVTKLHEFPWIAALT--KKGKFY--CGATLIAKRHVLTAAHCIEGVNPKEIKV 153
+ R+V G + + W +L K G F+ CG +LIA V+TA HCI + +V
Sbjct: 9 SSRVVNGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS--TSRTYQV 66
Query: 154 TLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFN-----NDIALLEM----ESGVDFE 204
LGE+DR S VI HP L N N NDIAL+++ + G +
Sbjct: 67 VLGEYDRSVLQGSEQVIPINAGDLFVHP---LWNSNCVACGNDIALVKLSRSAQLGDKVQ 123
Query: 205 APQIHPA--CLPGNS---------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITN 253
+ PA LP + L P + L++ +P++ E C + +
Sbjct: 124 LANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQEALLPVVDYEHCSQYDWWGITVKK 183
Query: 254 NMLCAGYAEGKRDSCQGDSGGPLQIAVA 281
M+CAG R C GDSGGPL A
Sbjct: 184 TMVCAG--GDTRSGCDGDSGGPLNCPAA 209
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
++GWGRL P + L++ +P++ E C + + M+CAG R C GD
Sbjct: 142 ISGWGRLYTGGPLPDKLQEALLPVVDYEHCSQYDWWGITVKKTMVCAG--GDTRSGCDGD 199
Query: 73 SGGPLQIAVA 82
SGGPL A
Sbjct: 200 SGGPLNCPAA 209
>pdb|1AU8|A Chain A, Human Cathepsin G
pdb|1T32|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|1CGH|A Chain A, Human Cathepsin G
Length = 224
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 31/196 (15%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 157
I+GG ++ H P++A L + G+ CG L+ + VLTAAHC G N I VTLG
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW-GSN---INVTLGA 56
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA-------PQIHP 210
H+ + + E+ I +RAIRHP ++ NDI LL++ V P+
Sbjct: 57 HN-IQRRENTQQHI-TARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQE 114
Query: 211 ACLPGN--------SLDERKPTANSLRKVEVPILSEEECKS--AGYSASRITNNMLCAGY 260
PG + R+ T ++LR+V++ + + +C Y R +C G
Sbjct: 115 GLRPGTLCTVAGWGRVSMRRGT-DTLREVQLRVQRDRQCLRIFGSYDPRR----QICVGD 169
Query: 261 AEGKRDSCQGDSGGPL 276
++ + +GDSGGPL
Sbjct: 170 RRERKAAFKGDSGGPL 185
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKS--AGYSASRITNNMLCAGYAEGK 65
G + VAGWGR+ R+ T ++LR+V++ + + +C Y R +C G +
Sbjct: 119 GTLCTVAGWGRVSMRRGT-DTLREVQLRVQRDRQCLRIFGSYDPRR----QICVGDRRER 173
Query: 66 RDSCQGDSGGPL 77
+ + +GDSGGPL
Sbjct: 174 KAAFKGDSGGPL 185
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 16/184 (8%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 159
+VGG EFP++ L+ CG L A+ VLTAAHC+ G N I T G D
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 160 RLSKNESVPVIIRKVKRAIRH----PDFSLSNFNNDI--ALLEMESGVDFEAPQIHPACL 213
L + +V V KV +A + D++L I L++ + + A
Sbjct: 57 -LQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGW 115
Query: 214 PGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE-GKRDSCQGDS 272
N E L K VP +S+ C+SA Y + N +CAGY + G D+CQGDS
Sbjct: 116 GANR--EGGSQQRYLLKANVPFVSDAACRSA-YGNELVANEEICAGYPDTGGVDTCQGDS 172
Query: 273 GGPL 276
GGP+
Sbjct: 173 GGPM 176
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE-GKRDSCQG 71
VAGWG E L K VP +S+ C+SA Y + N +CAGY + G D+CQG
Sbjct: 112 VAGWGANREGGSQQRYLLKANVPFVSDAACRSA-YGNELVANEEICAGYPDTGGVDTCQG 170
Query: 72 DSGGPL 77
DSGGP+
Sbjct: 171 DSGGPM 176
>pdb|1KYN|B Chain B, Cathepsin-G
pdb|1KYN|A Chain A, Cathepsin-G
Length = 235
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 31/196 (15%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 157
I+GG ++ H P++A L + G+ CG L+ + VLTAAHC G N I VTLG
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW-GSN---INVTLGA 56
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEA-------PQIHP 210
H+ + + E+ I +RAIRHP ++ NDI LL++ V P+
Sbjct: 57 HN-IQRRENTQQHI-TARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQE 114
Query: 211 ACLPGN--------SLDERKPTANSLRKVEVPILSEEECKS--AGYSASRITNNMLCAGY 260
PG + R+ T ++LR+V++ + + +C Y R +C G
Sbjct: 115 GLRPGTLCTVAGWGRVSMRRGT-DTLREVQLRVQRDRQCLRIFGSYDPRR----QICVGD 169
Query: 261 AEGKRDSCQGDSGGPL 276
++ + +GDSGGPL
Sbjct: 170 RRERKAAFKGDSGGPL 185
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKS--AGYSASRITNNMLCAGYAEGK 65
G + VAGWGR+ R+ T ++LR+V++ + + +C Y R +C G +
Sbjct: 119 GTLCTVAGWGRVSMRRGT-DTLREVQLRVQRDRQCLRIFGSYDPRR----QICVGDRRER 173
Query: 66 RDSCQGDSGGPL 77
+ + +GDSGGPL
Sbjct: 174 KAAFKGDSGGPL 185
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 84/184 (45%), Gaps = 16/184 (8%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 159
+VGG EFP++ L+ CG L A+ VLTAAHC+ G N I T G D
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 160 RLSKNESVPVIIRKVKRAIRH----PDFSLSNFNNDI--ALLEMESGVDFEAPQIHPACL 213
L +V V KV +A + D++L I L++ + + A
Sbjct: 57 -LQSGAAVKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGW 115
Query: 214 PGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE-GKRDSCQGDS 272
N E L K VP +S+ C+SA Y + N +CAGY + G D+CQGDS
Sbjct: 116 GANR--EGGSQQRYLLKANVPFVSDAACRSA-YGNELVANEEICAGYPDTGGVDTCQGDS 172
Query: 273 GGPL 276
GGP+
Sbjct: 173 GGPM 176
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE-GKRDSCQG 71
VAGWG E L K VP +S+ C+SA Y + N +CAGY + G D+CQG
Sbjct: 112 VAGWGANREGGSQQRYLLKANVPFVSDAACRSA-YGNELVANEEICAGYPDTGGVDTCQG 170
Query: 72 DSGGPL 77
DSGGP+
Sbjct: 171 DSGGPM 176
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 26/192 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 159
IVGG + ++P+ +L G CGA+++ +VLTAAHC++G+ N +KV +G +
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGT-N 59
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLD 219
LS++ V V+ A+ + ++ ND+AL+ + + + F + P L N D
Sbjct: 60 YLSESGDV----YDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFN-DLVQPIKLSTNDED 114
Query: 220 -ERKP--------------TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
E P T N+L+++E+ + +++C+ + R+ ++ +C G+
Sbjct: 115 LESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW---RVIDSHICTLTKRGE 171
Query: 265 RDSCQGDSGGPL 276
+C GDSGGPL
Sbjct: 172 -GACHGDSGGPL 182
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+ GWG T N+L+++E+ + +++C+ + R+ ++ +C G+ +C GD
Sbjct: 122 LTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW---RVIDSHICTLTKRGE-GACHGD 177
Query: 73 SGGPLQIAVARPGKMEVIACG 93
SGGPL VA ++ +++ G
Sbjct: 178 SGGPL---VANGAQIGIVSFG 195
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 84/184 (45%), Gaps = 16/184 (8%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 159
+VGG EFP++ L+ CG L A+ VLTAAHC+ G N I T G D
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 160 RLSKNESVPVIIRKVKRAIRH----PDFSLSNFNNDI--ALLEMESGVDFEAPQIHPACL 213
L + +V V KV +A + D++L I L++ + + A
Sbjct: 57 -LQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGW 115
Query: 214 PGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE-GKRDSCQGDS 272
N E L K VP +S+ C+SA Y + N +CAGY + G D CQGDS
Sbjct: 116 GANR--EGGSQQRYLLKANVPFVSDAACRSA-YGNELVANEEICAGYPDTGGVDPCQGDS 172
Query: 273 GGPL 276
GGP+
Sbjct: 173 GGPM 176
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAE-GKRDSCQG 71
VAGWG E L K VP +S+ C+SA Y + N +CAGY + G D CQG
Sbjct: 112 VAGWGANREGGSQQRYLLKANVPFVSDAACRSA-YGNELVANEEICAGYPDTGGVDPCQG 170
Query: 72 DSGGPL 77
DSGGP+
Sbjct: 171 DSGGPM 176
>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|B Chain B, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|C Chain C, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
Length = 241
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 27/200 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFY---CGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 157
++GG EFPW + ++ + CGA+L++ L+A+HC++GV P I+V G
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAG- 59
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDF--SLSNFNNDIALLEMESGVDFEAPQIHPACLPG 215
++++ V H ++ ++++NDIA+L + + + I A LP
Sbjct: 60 --LWQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGG-NIQAAVLPA 116
Query: 216 NSLDERKPTA----------------NSLRKVEVPILSEEECKSA--GYSASRITNNMLC 257
N+ ++ T + L+K +P+++ +C +A G + I +N +C
Sbjct: 117 NNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHIC 176
Query: 258 AGYAEGKRDSCQGDSGGPLQ 277
G +C GDSGGPL
Sbjct: 177 VQDPAGNTGACNGDSGGPLN 196
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 5 NYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSA--GYSASRITNNMLCAGYA 62
+Y G +++GWGR D + L+K +P+++ +C +A G + I +N +C
Sbjct: 121 DYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDP 180
Query: 63 EGKRDSCQGDSGGPLQ 78
G +C GDSGGPL
Sbjct: 181 AGNTGACNGDSGGPLN 196
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 33/223 (14%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKF-YCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
I+GG +K H P++A L T G +CG LI + VLTAAHC + I VTLG
Sbjct: 1 IIGGTESKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG----RSITVTLG 56
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEME---------------SGV 201
H+ + ++ + +V + RHP ++ S ++DI LL+++ S
Sbjct: 57 AHNITEEEDTWQKL--EVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQF 114
Query: 202 DFEAPQIHPACLPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 261
+F P KP +++L++V++ ++ + C + N LC G
Sbjct: 115 NFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACS---HFRDFDHNLQLCVGNP 171
Query: 262 EGKRDSCQGDSGGPLQIA-----VARPGKMEATLSKVVSRVQE 299
+ + +GDSGGPL A + G+ +A V +R+
Sbjct: 172 RKTKSAFKGDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISH 214
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G++ VAGWGR KP +++L++V++ ++ + C + N LC G +
Sbjct: 120 GRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACS---HFRDFDHNLQLCVGNPRKTKS 176
Query: 68 SCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFPWI 115
+ +GDSGGPL A G +++ G+ + V ++ H PWI
Sbjct: 177 AFKGDSGGPLLCAGVAQG---IVSYGRSDAKPPAVFTRIS--HYRPWI 219
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 22/191 (11%)
Query: 101 IVGGNVTKLHEFPWIAAL--TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH 158
+VGG+ ++E P++ AL + +C LI + VLTAAHC + + I++ LG H
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHC----DRRNIRIKLGMH 56
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS- 217
+ +NE + + + K + F + + DI L+ + V + I P LP S
Sbjct: 57 SKNIRNEDEQIRVPRGKYFCLNTKFP-NGLDKDIMLIRLRRPVTYST-HIAPVSLPSRSR 114
Query: 218 --------LDERKPTANSLRKV----EVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
+ K + + V + I+ + C+ Y + LCAG +G R
Sbjct: 115 GVGSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPL-YPWVPADSRTLCAGILKGGR 173
Query: 266 DSCQGDSGGPL 276
D+C GDSGGPL
Sbjct: 174 DTCHGDSGGPL 184
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
+ GWG++ + + I+ + C+ Y + LCAG +G RD+C GD
Sbjct: 122 IMGWGKISTTT-YPDVPHCTNIFIVKHKWCEPL-YPWVPADSRTLCAGILKGGRDTCHGD 179
Query: 73 SGGPLQIAVARPGKME-VIACGQVERNQRIVGGNVTKLHEF-PWIAAL 118
SGGPL G+M ++A G Q + TK+ ++ WI ++
Sbjct: 180 SGGPLICN----GEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSI 223
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 33/223 (14%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKF-YCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
I+GG K H P++A L T G +CG LI + VLTAAHC + I VTLG
Sbjct: 3 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG----RSITVTLG 58
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEME---------------SGV 201
H+ + ++ + +V + RHP ++ S ++DI LL+++ S
Sbjct: 59 AHNITEEEDTWQKL--EVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQF 116
Query: 202 DFEAPQIHPACLPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 261
+F P KP +++L++V++ ++ + C + N LC G
Sbjct: 117 NFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACS---HFRDFDHNLQLCVGNP 173
Query: 262 EGKRDSCQGDSGGPLQIA-----VARPGKMEATLSKVVSRVQE 299
+ + +GDSGGPL A + G+ +A V +R+
Sbjct: 174 RKTKSAFKGDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISH 216
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G++ VAGWGR KP +++L++V++ ++ + C + N LC G +
Sbjct: 122 GRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACS---HFRDFDHNLQLCVGNPRKTKS 178
Query: 68 SCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFPWI 115
+ +GDSGGPL A G +++ G+ + V ++ H PWI
Sbjct: 179 AFKGDSGGPLLCAGVAQG---IVSYGRSDAKPPAVFTRIS--HYRPWI 221
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 33/223 (14%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKF-YCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
I+GG K H P++A L T G +CG LI + VLTAAHC + I VTLG
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG----RSITVTLG 56
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEME---------------SGV 201
H+ + ++ + +V + RHP ++ S ++DI LL+++ S
Sbjct: 57 AHNITEEEDTWQKL--EVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQF 114
Query: 202 DFEAPQIHPACLPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 261
+F P KP +++L++V++ ++ + C + N LC G
Sbjct: 115 NFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACS---HFRDFDHNLQLCVGNP 171
Query: 262 EGKRDSCQGDSGGPLQIA-----VARPGKMEATLSKVVSRVQE 299
+ + +GDSGGPL A + G+ +A V +R+
Sbjct: 172 RKTKSAFKGDSGGPLLCAGAAQGIVSYGRSDAKPPAVFTRISH 214
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G++ VAGWGR KP +++L++V++ ++ + C + N LC G +
Sbjct: 120 GRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACS---HFRDFDHNLQLCVGNPRKTKS 176
Query: 68 SCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFPWI 115
+ +GDSGGPL A A G +++ G+ + V ++ H PWI
Sbjct: 177 AFKGDSGGPLLCAGAAQG---IVSYGRSDAKPPAVFTRIS--HYQPWI 219
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 33/223 (14%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKF-YCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
I+GG K H P++A L T G +CG LI + VLTAAHC + I VTLG
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG----RSITVTLG 56
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEME---------------SGV 201
H+ + ++ + +V + RHP ++ S ++DI LL+++ S
Sbjct: 57 AHNITEEEDTWQKL--EVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQF 114
Query: 202 DFEAPQIHPACLPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 261
+F P KP +++L++V++ ++ + C + N LC G
Sbjct: 115 NFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACS---HFRDFDHNLQLCVGNP 171
Query: 262 EGKRDSCQGDSGGPLQIA-----VARPGKMEATLSKVVSRVQE 299
+ + +GDSGGPL A + G+ +A V +R+
Sbjct: 172 RKTKSAFKGDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISH 214
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G++ VAGWGR KP +++L++V++ ++ + C + N LC G +
Sbjct: 120 GRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACS---HFRDFDHNLQLCVGNPRKTKS 176
Query: 68 SCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFPWI 115
+ +GDSGGPL A G +++ G+ + V ++ H PWI
Sbjct: 177 AFKGDSGGPLLCAGVAQG---IVSYGRSDAKPPAVFTRIS--HYRPWI 219
>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
Length = 232
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 36/197 (18%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
++GG+ ++E P++A L G ++CG TLI + V+TAAHC + ++ LG H +
Sbjct: 1 VLGGDECDINEHPFLAFLYSHG-YFCGLTLINQEWVVTAAHC----DSTNFQMQLGVHSK 55
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSN-FNNDIALLEMESGVDFEAPQIHPACLPGNSLD 219
NE R K P+ ++S + DI L++++ + + I P LP N
Sbjct: 56 KVLNEDEQT--RNPKEKFICPNKNMSEVLDKDIMLIKLDKPIS-NSKHIAPLSLPSN--- 109
Query: 220 ERKPTANSLRKV--------------EVP------ILSEEECKSAGYSASRITNNMLCAG 259
P+ S+ ++ +VP ++ E C+ A T LCAG
Sbjct: 110 --PPSVGSVCRIMGWGSITIPNETYPDVPYCANINLVDYEVCQGAYNGLPAKTT--LCAG 165
Query: 260 YAEGKRDSCQGDSGGPL 276
EG +D+C GDSGGPL
Sbjct: 166 VLEGGKDTCVGDSGGPL 182
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 8 GKIGIVAGWGRL---DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEG 64
G + + GWG + +E P + ++ E C+ A T LCAG EG
Sbjct: 114 GSVCRIMGWGSITIPNETYPDVPYCANIN--LVDYEVCQGAYNGLPAKTT--LCAGVLEG 169
Query: 65 KRDSCQGDSGGPL 77
+D+C GDSGGPL
Sbjct: 170 GKDTCVGDSGGPL 182
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 84/196 (42%), Gaps = 31/196 (15%)
Query: 110 HEFPWIAALT--KKGKFY--CGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNE 165
+ + W +L K G F+ CG +LIA V+TA HCI + +V LGE+DR
Sbjct: 8 YSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS--TSRTYQVVLGEYDRSVLEG 65
Query: 166 SVPVIIRKVKRAIRHPDFSLSNFN-----NDIALLEM----ESGVDFEAPQIHPA--CLP 214
S VI HP L N N NDIAL+++ + G + + PA LP
Sbjct: 66 SEQVIPINAGDLFVHP---LWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILP 122
Query: 215 GNS---------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
+ L P + L++ +P + E C + + M+CAG R
Sbjct: 123 NEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAG--GDTR 180
Query: 266 DSCQGDSGGPLQIAVA 281
C GDSGGPL A
Sbjct: 181 SGCNGDSGGPLNCPAA 196
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
++GWGRL P + L++ +P + E C + + M+CAG R C GD
Sbjct: 129 ISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAG--GDTRSGCNGD 186
Query: 73 SGGPLQIAVA 82
SGGPL A
Sbjct: 187 SGGPLNCPAA 196
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 33/223 (14%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKF-YCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
I+GG K H P++A L T G +CG LI + VLTAAHC + I VTLG
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG----RSITVTLG 56
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEME---------------SGV 201
H+ + ++ + +V + RHP ++ S ++DI LL+++ S
Sbjct: 57 AHNITEEEDTWQKL--EVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQK 114
Query: 202 DFEAPQIHPACLPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 261
+F P KP +++L++V++ ++ + C + N LC G
Sbjct: 115 NFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACS---HFRDFDHNLQLCVGNP 171
Query: 262 EGKRDSCQGDSGGPLQIA-----VARPGKMEATLSKVVSRVQE 299
+ + +GDSGGPL A + G+ +A V +R+
Sbjct: 172 RKTKSAFKGDSGGPLLCAGAAQGIVSYGRSDAKPPAVFTRISH 214
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G++ VAGWGR KP +++L++V++ ++ + C + N LC G +
Sbjct: 120 GRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACS---HFRDFDHNLQLCVGNPRKTKS 176
Query: 68 SCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFPWI 115
+ +GDSGGPL A A G +++ G+ + V ++ H PWI
Sbjct: 177 AFKGDSGGPLLCAGAAQG---IVSYGRSDAKPPAVFTRIS--HYQPWI 219
>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal
Plasma
Length = 237
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 37/203 (18%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GG + H PW A+ +G F CG L+ + VLTAAHC+ + ++ LG H+
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMS----DDYQIWLGRHN- 55
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLS-----------NFNNDIALLEMES---------- 199
LSK+E +V + P F LS + ++D+ LL +
Sbjct: 56 LSKDEDTAQ-FHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKI 114
Query: 200 -GVDFEAPQIHPACLPG-----NSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITN 253
+ + P++ C ++ R + +L+ VE+ + S E+C A ++T
Sbjct: 115 LDLPTQEPKLGSTCYTSGWGLISTFTNRG--SGTLQCVELRLQSNEKCARA--YPEKMTE 170
Query: 254 NMLCAGYAEGKRDSCQGDSGGPL 276
+LCA + + C GDSGG L
Sbjct: 171 FVLCATHRDDSGSICLGDSGGAL 193
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 8 GKIGIVAGWGRLDERKPTAN-SLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G +GWG + + +L+ VE+ + S E+C A ++T +LCA + +
Sbjct: 125 GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARA--YPEKMTEFVLCATHRDDSG 182
Query: 67 DSCQGDSGGPL 77
C GDSGG L
Sbjct: 183 SICLGDSGGAL 193
>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDG|B Chain B, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDH|A Chain A, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|B Chain B, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|C Chain C, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|D Chain D, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDI|A Chain A, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|B Chain B, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|C Chain C, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|D Chain D, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|E Chain E, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|F Chain F, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|G Chain G, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|H Chain H, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|I Chain I, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|J Chain J, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|K Chain K, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|L Chain L, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|M Chain M, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|N Chain N, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|O Chain O, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|P Chain P, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
Length = 223
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 27/192 (14%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+ G H PW AAL + + +C L+ + VL+AAHC + + LG H
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQ----NSYTIGLGLHSL 56
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLDE 220
+ E ++ + ++RHP+++ ND+ L++++ V E+ I S+
Sbjct: 57 EADQEPGSQMV-EASLSVRHPEYNRPLLANDLMLIKLDESVS-ESDTIRSI-----SIAS 109
Query: 221 RKPTANS---------LRKVEVPILSE--EECKSAGYSASRITN-----NMLCAGYAEGK 264
+ PTA + L +P + + + S++ + +M CAG + +
Sbjct: 110 QCPTAGNSCLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQ 169
Query: 265 RDSCQGDSGGPL 276
+DSC GDSGGPL
Sbjct: 170 KDSCNGDSGGPL 181
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 8 GKIGIVAGWGRL-DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G +V+GWG L + R PT L+ V V ++SEE C +M CAG + ++
Sbjct: 115 GNSCLVSGWGLLANGRMPTV--LQCVNVSVVSEEVCSK--LYDPLYHPSMFCAGGGQDQK 170
Query: 67 DSCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFP-WI 115
DSC GDSGGPL + +++ G+ Q V G T L +F WI
Sbjct: 171 DSCNGDSGGPL---ICNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWI 217
>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The
Venom Of Copperhead Snake Agkistrodon Contortrix
Contortrix
pdb|2AIQ|A Chain A, Crystal Structure Of Benzamidine-Inhibited Protein C
Activator From The Venom Of Copperhead Snake Agkistrodon
Contortrix Contortrix
Length = 231
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 45/201 (22%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
++GG+ ++E ++A + G CG TLI + VLTA HC G +++ LG H+
Sbjct: 1 VIGGDECNINEHRFLALVYANGSL-CGGTLINQEWVLTARHCDRG----NMRIYLGMHNL 55
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNN-----DIALLEMESGVDFEAPQIHPACLPG 215
N+ ++R + F L+ N+ DI L+ + V A I P LP
Sbjct: 56 KVLNKDA------LRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSA-HIAPLSLPS 108
Query: 216 NSLDERKPTANSLRKV--------------EVP------ILSEEECKSAGYSASRITNNM 255
N P+ S+ ++ +VP IL C++A + T
Sbjct: 109 N-----PPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGLAATT--- 160
Query: 256 LCAGYAEGKRDSCQGDSGGPL 276
LCAG EG +D+C+GDSGGPL
Sbjct: 161 LCAGILEGGKDTCKGDSGGPL 181
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRK-VEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G + + GWG + T + + IL C++A + T LCAG EG +
Sbjct: 114 GSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGLAATT---LCAGILEGGK 170
Query: 67 DSCQGDSGGPL 77
D+C+GDSGGPL
Sbjct: 171 DTCKGDSGGPL 181
>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 128
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 112 FPWIAALTKKGKF-YCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNESVPVI 170
+PW +L K F +CG +LI++ V+TAAHC GV ++ V GE D+ S E++ V+
Sbjct: 9 WPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC--GVKTSDV-VVAGEFDQGSDEENIQVL 65
Query: 171 IRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLDERKP 223
K+ + ++P F++ NDI LL++ + F + + CLP N D+ P
Sbjct: 66 --KIAQVFKNPKFNMFTVRNDITLLKLATPAQF-SETVSAVCLP-NVDDDFPP 114
>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein
(cap37)
Length = 225
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 47/201 (23%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + +FP++A++ +G+ +CG LI R V+TAA C + NP V LG +D
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYD- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFN----------NDIALLEMESGVDFEAP-QIH 209
+R+ +R R FS+S+ + ND+ LL+++ + + I
Sbjct: 60 ----------LRRRERQSRQ-TFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTIL 108
Query: 210 PACLPGNSLDE----------RKPTANSL----RKVEVPILSEEECKSAGYSASRITNNM 255
P L +++ + + L R V V + E++C+ N
Sbjct: 109 PLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----------NN 158
Query: 256 LCAGYAEGKRDSCQGDSGGPL 276
+C G + C GD G PL
Sbjct: 159 VCTGVLTRRGGICNGDQGTPL 179
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
VAGWG + R V V + E++C+ N +C G + C GD
Sbjct: 125 VAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----------NNVCTGVLTRRGGICNGD 174
Query: 73 SGGPL 77
G PL
Sbjct: 175 QGTPL 179
>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom
pdb|1BQY|B Chain B, Plasminogen Activator (tsv-pa) From Snake Venom
Length = 234
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 22/191 (11%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
+ GG+ ++E + L F CG TLI + V+TAAHC + ++ G H +
Sbjct: 1 VFGGDECNINEHRSLVVLFNSNGFLCGGTLINQDWVVTAAHC----DSNNFQLLFGVHSK 56
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSN-FNNDIALLEMESGVD-----------FEAPQI 208
NE R K P+ + + DI L++++S V P +
Sbjct: 57 KILNEDEQT--RDPKEKFFCPNRKKDDEVDKDIMLIKLDSSVSNSEHIAPLSLPSSPPSV 114
Query: 209 HPACL---PGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 265
C G ++ ++ + + IL C++A YS ++ N LCAG +G R
Sbjct: 115 GSVCRIMGWGKTIPTKEIYPDVPHCANINILDHAVCRTA-YSWRQVANTTLCAGILQGGR 173
Query: 266 DSCQGDSGGPL 276
D+C DSGGPL
Sbjct: 174 DTCHFDSGGPL 184
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 7 TGKIGIVAGWGR-LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 65
G + + GWG+ + ++ + + IL C++A YS ++ N LCAG +G
Sbjct: 114 VGSVCRIMGWGKTIPTKEIYPDVPHCANINILDHAVCRTA-YSWRQVANTTLCAGILQGG 172
Query: 66 RDSCQGDSGGPL 77
RD+C DSGGPL
Sbjct: 173 RDTCHFDSGGPL 184
>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp
pdb|1AE5|A Chain A, Human Heparin Binding Protein
Length = 225
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 47/201 (23%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + +FP++A++ +G+ +CG LI R V+TAA C + NP V LG +D
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYD- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFN----------NDIALLEMESGVDFEAP-QIH 209
+R+ +R R FS+S+ + ND+ LL+++ + + I
Sbjct: 60 ----------LRRRERQSRQ-TFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTIL 108
Query: 210 PACLPGNSLDE----------RKPTANSL----RKVEVPILSEEECKSAGYSASRITNNM 255
P L +++ + + L R V V + E++C+ N
Sbjct: 109 PLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----------NN 158
Query: 256 LCAGYAEGKRDSCQGDSGGPL 276
+C G + C GD G PL
Sbjct: 159 VCTGVLTRRGGICNGDGGTPL 179
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
VAGWG + R V V + E++C+ N +C G + C GD
Sbjct: 125 VAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----------NNVCTGVLTRRGGICNGD 174
Query: 73 SGGPL 77
G PL
Sbjct: 175 GGTPL 179
>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
Thrombin- Like Enzyme From Agkistrodon Halys
Length = 238
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 26/195 (13%)
Query: 101 IVGGNVTKLHEFPWIAAL--TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH 158
I+GG+ ++E ++ AL ++ +CG TLI + VLTAAHC + K ++ LG H
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHC----DRKNFRIKLGMH 56
Query: 159 DRLSKNESVPVIIRKVKR-AIRHPDFSLSNFNNDIALLEMESGVD-----------FEAP 206
+ NE + K K + +++L ++ DI L+ ++S V P
Sbjct: 57 SKKVPNEDEQTRVPKEKFFCLSSKNYTL--WDKDIMLIRLDSPVKNSKHIAPFSLPSSPP 114
Query: 207 QIHPAC--LPGNSLDERKPTANSLRK-VEVPILSEEECKSAGYSASRI--TNNMLCAGYA 261
+ C + + + T + V + +L E C+ A Y + T+ LCAG
Sbjct: 115 SVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCR-APYPEFELPATSRTLCAGIL 173
Query: 262 EGKRDSCQGDSGGPL 276
EG +D+C+GDSGGPL
Sbjct: 174 EGGKDTCKGDSGGPL 188
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRK-VEVPILSEEECKSAGYSASRI--TNNMLCAGYAEG 64
G + + GWGR+ + T + V + +L E C+ A Y + T+ LCAG EG
Sbjct: 117 GSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCR-APYPEFELPATSRTLCAGILEG 175
Query: 65 KRDSCQGDSGGPL 77
+D+C+GDSGGPL
Sbjct: 176 GKDTCKGDSGGPL 188
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSL-SNFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R ++ I +++ HP ++ N + DIAL++++ V F + IHP
Sbjct: 61 VRIGKHSRTRYERNIEK-ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAF-SDYIHPV 118
Query: 212 CLP 214
CLP
Sbjct: 119 CLP 121
>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|F Chain F, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|B Chain B, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|G Chain G, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|B Chain B, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|G Chain G, Bovine Chymotrypsin Complexed To Bpti
pdb|1AFQ|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|1VGC|B Chain B, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|B Chain B, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|B Chain B, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|B Chain B, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|B Chain B, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|B Chain B, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|C Chain C, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|D Chain D, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|B Chain B, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|F Chain F, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|B Chain B, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|F Chain F, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|F Chain F, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|F Chain F, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|F Chain F, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|F Chain F, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|F Chain F, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|F Chain F, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|F Chain F, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|B Chain B, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|F Chain F, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|B Chain B, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|F Chain F, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|B Chain B, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|F Chain F, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|F Chain F, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|B Chain B, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|B Chain B, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|B Chain B, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|B Chain B, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|B Chain B, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
pdb|3RU4|D Chain D, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 131
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 111 EFPWIAALTKKGKF-YCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNESVPV 169
+PW +L K F +CG +LI + V+TAAHC GV ++ V GE D+ S +E +
Sbjct: 11 SWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC--GVTTSDV-VVAGEFDQGSSSEKIQK 67
Query: 170 IIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLD 219
+ K+ + ++ ++ NNDI LL++ + F + + CLP S D
Sbjct: 68 L--KIAKVFKNSKYNSLTINNDITLLKLSTAASF-SQTVSAVCLPSASDD 114
>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 131
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKF-YCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IV G +PW +L K F +CG +LI++ V+TAAHC GV ++ V GE D
Sbjct: 1 IVNGEDAIPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC--GVKTSDV-VVAGEFD 57
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLD 219
+ S E++ V+ K+ + ++P F++ NDI LL++ + F + + LP N D
Sbjct: 58 QGSDEENIQVL--KIAQVFKNPKFNMFTVRNDITLLKLATPAQF-SETVSAVSLP-NVDD 113
Query: 220 ERKP 223
+ P
Sbjct: 114 DFPP 117
>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 36/198 (18%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
++GGN ++E ++ A F+CG TLI V+TAAHC + + ++ LG H +
Sbjct: 1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHC----DSTDFQMQLGVHSK 56
Query: 161 LSKNESVPVIIRKVKRAIRHP--DFSLSNFNN------DIALLEMESGVD---------- 202
NE R+P F N NN DI L++++ +
Sbjct: 57 KVLNED---------EQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSL 107
Query: 203 -FEAPQIHPAC--LPGNSLDERKPTANSLRK-VEVPILSEEECKSAGYSASRITNNMLCA 258
P + C + S+ K T + + +L C+ AGY LCA
Sbjct: 108 PSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQ-AGYPELLAEYRTLCA 166
Query: 259 GYAEGKRDSCQGDSGGPL 276
G +G +D+C GDSGGPL
Sbjct: 167 GIVQGGKDTCGGDSGGPL 184
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRK-VEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G + + GWG + K T + + +L C+ AGY LCAG +G +
Sbjct: 115 GSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQ-AGYPELLAEYRTLCAGIVQGGK 173
Query: 67 DSCQGDSGGPL 77
D+C GDSGGPL
Sbjct: 174 DTCGGDSGGPL 184
>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 153 VTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLS-NFNNDIALLEMESGVDFEAPQIHPA 211
V +G+H R V I K I HP ++ N + DIALL+++ ++ + IHP
Sbjct: 61 VRIGKHSRTRYERKVEKISMLDKIYI-HPRYNWKENLDRDIALLKLKRPIEL-SDYIHPV 118
Query: 212 CLP 214
CLP
Sbjct: 119 CLP 121
>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 47/201 (23%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + +FP++A++ +G CG LI R V+TAA C + NP V LG +D
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGSHECGGALIHARFVMTAASCFQSQNPGVSTVVLGAYD- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFN----------NDIALLEMESGVDFEAP-QIH 209
+R+ +R R FS+S+ + ND+ LL+++ + + I
Sbjct: 60 ----------LRRRERQSRQ-TFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTIL 108
Query: 210 PACLPGNSLDE----------RKPTANSL----RKVEVPILSEEECKSAGYSASRITNNM 255
P L +++ + + L R V V + E++C+ N
Sbjct: 109 PLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----------NN 158
Query: 256 LCAGYAEGKRDSCQGDSGGPL 276
+C G + C GD G PL
Sbjct: 159 VCTGVLTRRGGICNGDGGTPL 179
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
VAGWG + R V V + E++C+ N +C G + C GD
Sbjct: 125 VAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----------NNVCTGVLTRRGGICNGD 174
Query: 73 SGGPL 77
G PL
Sbjct: 175 GGTPL 179
>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 83/198 (41%), Gaps = 36/198 (18%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
++GGN ++E ++ A F+CG TLI V+TAAHC + ++ LG H +
Sbjct: 1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHC----DSTNFQMQLGVHSK 56
Query: 161 LSKNESVPVIIRKVKRAIRHP--DFSLSNFNN------DIALLEMESGVD---------- 202
NE R+P F N NN DI L++++ +
Sbjct: 57 KVLNED---------EQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSL 107
Query: 203 -FEAPQIHPAC--LPGNSLDERKPTANSLRK-VEVPILSEEECKSAGYSASRITNNMLCA 258
P + C + S+ K T + + +L C+ AGY LCA
Sbjct: 108 PSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQ-AGYPELLAEYRTLCA 166
Query: 259 GYAEGKRDSCQGDSGGPL 276
G +G +D+C GDSGGPL
Sbjct: 167 GIVQGGKDTCGGDSGGPL 184
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRK-VEVPILSEEECKSAGYSASRITNNMLCAGYAEGKR 66
G + + GWG + K T + + +L C+ AGY LCAG +G +
Sbjct: 115 GSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQ-AGYPELLAEYRTLCAGIVQGGK 173
Query: 67 DSCQGDSGGPL 77
D+C GDSGGPL
Sbjct: 174 DTCGGDSGGPL 184
>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A
Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms
Resolution
Length = 218
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + H +P++ +L +G +CGATLIA V++AAHC+ VN + ++V LG H+
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHN- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
LS+ E + V+R I + N NDI +L++ A + A LP
Sbjct: 60 LSRREPTRQVF-AVQR-IFEDGYDPVNLLNDIVILQLNGSATINA-NVQVAQLPAQGRRL 116
Query: 215 GNS----------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN L + A+ L+++ V +++ S R +N +C +
Sbjct: 117 GNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT---------SLCRRSN--VCTLVRGRQ 165
Query: 265 RDSCQGDSGGPL 276
C GDSG PL
Sbjct: 166 AGVCFGDSGSPL 177
>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human
Leukocyte Elastase In A Complex With A Valine
Chloromethyl Ketone Inhibitor
pdb|1H1B|A Chain A, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|1H1B|B Chain B, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|2Z7F|E Chain E, Crystal Structure Of The Complex Of Human Neutrophil
Elastase With 12SLPI
pdb|3Q76|A Chain A, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q76|B Chain B, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q77|A Chain A, Structure Of Human Neutrophil Elastase In Complex With A
Dihydropyrimidone Inhibitor
Length = 218
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + H +P++ +L +G +CGATLIA V++AAHC+ VN + ++V LG H+
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHN- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
LS+ E + V+R I + N NDI +L++ A + A LP
Sbjct: 60 LSRREPTRQVF-AVQR-IFENGYDPVNLLNDIVILQLNGSATINA-NVQVAQLPAQGRRL 116
Query: 215 GNS----------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN L + A+ L+++ V +++ S R +N +C +
Sbjct: 117 GNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT---------SLCRRSN--VCTLVRGRQ 165
Query: 265 RDSCQGDSGGPL 276
C GDSG PL
Sbjct: 166 AGVCFGDSGSPL 177
>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte
Elastase (Pmn Elastase) And The Third Domain Of The
Turkey Ovomucoid Inhibitor
Length = 218
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + H +P++ +L +G +CGATLIA V++AAHC+ VN + ++V LG H+
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHN- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
LS+ E + V+R I + N NDI +L++ A + A LP
Sbjct: 60 LSRREPTRQVF-AVQR-IFENGYDPVNLLNDIVILQLNGSATINA-NVQVAQLPAQGRRL 116
Query: 215 GNS----------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN L + A+ L+++ V +++ S R +N +C +
Sbjct: 117 GNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT---------SLCRRSN--VCTLVRGRQ 165
Query: 265 RDSCQGDSGGPL 276
C GDSG PL
Sbjct: 166 AGVCFGDSGSPL 177
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 52/226 (23%)
Query: 92 CGQ----VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCI---- 143
CG+ V++ QRI+GG++ FPW A + GATLI ++ +LT A +
Sbjct: 90 CGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLGH 149
Query: 144 -EGVNPKEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVD 202
K+I TL RL + V I KV I HPD N DI L++++ V
Sbjct: 150 KNDTKAKDIAPTL----RLYVGKKQEVEIEKV---IFHPD----NSTVDIGLIKLKQKVP 198
Query: 203 FEAPQIHPACLP--------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSA 248
++ P CLP G + L+ V +P+ +E+C Y
Sbjct: 199 VNE-RVMPICLPSKDYVNVGLVGYVSGWGRNANLNFTEHLKYVMLPVADQEKCVQY-YEG 256
Query: 249 SRI----------------TNNMLCAGYAEGKRDSCQGDSGGPLQI 278
S + + CAG ++ + D+C GD+G +
Sbjct: 257 STVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAV 302
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRI--------------- 52
G +G V+GWGR T + L+ V +P+ +E+C Y S +
Sbjct: 217 GLVGYVSGWGRNANLNFTEH-LKYVMLPVADQEKCVQY-YEGSTVPEKKTPKSPVGVQPI 274
Query: 53 -TNNMLCAGYAEGKRDSCQGDSGGPLQI 79
+ CAG ++ + D+C GD+G +
Sbjct: 275 LNEHTFCAGLSKYQEDTCYGDAGSAFAV 302
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 20/190 (10%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
++GG+ ++E + A F+C TLI + VLTAAHC + ++ LG H +
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHC----DNTNFQMKLGVHSK 56
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSN-FNNDIALLEMESGVD-----------FEAPQI 208
NE R K P+ + DI L++++S V P +
Sbjct: 57 KVLNEDEQT--RNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSV 114
Query: 209 HPAC--LPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 266
C + S+ K T + L ++ AGY LCAG EG +D
Sbjct: 115 GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLCAGILEGGKD 174
Query: 267 SCQGDSGGPL 276
+C GDSGGPL
Sbjct: 175 TCGGDSGGPL 184
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G + + GWG + K T + L ++ AGY LCAG EG +D
Sbjct: 115 GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLCAGILEGGKD 174
Query: 68 SCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEF-PWIAAL 118
+C GDSGGPL + +++ G Q + G TK+ ++ WI ++
Sbjct: 175 TCGGDSGGPL---ICNGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSI 223
>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl
101, 146
Length = 218
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + H +P++ +L G +CGATLIA V++AAHC+ VN + ++V LG H+
Sbjct: 1 IVGGRRARPHAWPFMVSLQLAGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHN- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
LS+ E + V+R I + N NDI +L++ A + A LP
Sbjct: 60 LSRREPTRQVF-AVQR-IFEDGYDPVNLLNDIVILQLNGSATINA-NVQVAQLPAQGRRL 116
Query: 215 GNS----------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN L + A+ L+++ V +++ S R +N +C +
Sbjct: 117 GNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT---------SLCRRSN--VCTLVRGRQ 165
Query: 265 RDSCQGDSGGPL 276
C GDSG PL
Sbjct: 166 AGVCFGDSGSPL 177
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 42/199 (21%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGK---FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 157
IVGG+ + H P++A+L +G +CG TLI VLTAAHC+ + + + V LG
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60
Query: 158 HDRLSKNESVPVIIRKVKRAIRHPDFSLSNFN-----NDIALLEMESGVDFEAP------ 206
H+ ++ + ++ L+N++ NDI L+++ S + A
Sbjct: 61 HNVRTQEPT--------QQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQL 112
Query: 207 --QIHPA-----CLP--GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLC 257
Q P CL + P A L+++ V +++ C+ + +C
Sbjct: 113 PQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVT-FFCRP----------HNIC 161
Query: 258 AGYAEGKRDSCQGDSGGPL 276
K C GDSGGPL
Sbjct: 162 TFVPRRKAGICFGDSGGPL 180
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 2 DEANYTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY 61
D+ G + GWGR+ P A L+++ V +++ C+ + +C
Sbjct: 116 DQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVT-FFCRP----------HNICTFV 164
Query: 62 AEGKRDSCQGDSGGPL 77
K C GDSGGPL
Sbjct: 165 PRRKAGICFGDSGGPL 180
>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase
Length = 218
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
IVGG + H +P++ +L +G +CGATLIA V++AAHC+ VN + ++V LG H+
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHN- 59
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP------ 214
LS+ E + V+R I + N NDI +L++ A + A LP
Sbjct: 60 LSRREPTRQVF-AVQR-IFENGYDPVNLLNDIVILQLNGSATINA-NVQVAQLPAQGRRL 116
Query: 215 GNS----------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
GN L + A+ L+++ V +++ S R +N +C +
Sbjct: 117 GNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT---------SLCRRSN--VCTLVRGRQ 165
Query: 265 RDSCQGDSGGPL 276
C GD G PL
Sbjct: 166 AGVCFGDXGSPL 177
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH-- 158
IVGG + P+ +L G +CG +LI + V++AAHC + I+V LGEH
Sbjct: 1 IVGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMES 199
D L NE + I HP+F+ + +NDI L+++ S
Sbjct: 56 DVLEGNEQ----FINAAKIITHPNFNGNTLDNDIMLIKLSS 92
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 101 IVGGNVTKLHEFPWIAAL---TKKGKFY-CGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 156
I+GG + H P++A L T + C LI + V+TAAHC + I V LG
Sbjct: 1 IIGGTECRPHARPYMAYLEIVTPENHLSACSGFLIRRNFVMTAAHCAG----RSITVLLG 56
Query: 157 EHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFE-APQIHPACLPG 215
H++ K ++ + +V++ HP + NDI LL+++ + P
Sbjct: 57 AHNKKVKEDTWQKL--EVEKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGVGTLPISAKS 114
Query: 216 NSL--------------DERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 261
NS+ + +P +++L++V++ IL + CK + LC G
Sbjct: 115 NSIPPGRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACK---HFEDFHQEPQLCVGNP 171
Query: 262 EGKRDSCQGDSGGPLQIA 279
+ R+ +GDSGGPL A
Sbjct: 172 KKIRNVYKGDSGGPLLCA 189
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G++ GWGR + +P +++L++V++ IL + CK + LC G + R+
Sbjct: 120 GRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACK---HFEDFHQEPQLCVGNPKKIRN 176
Query: 68 SCQGDSGGPLQIAVARPGKMEVIACGQVERNQRIVGGNVTKLHEFPWIAALTKK 121
+GDSGGPL A G + IA V RN + H PWI + ++
Sbjct: 177 VYKGDSGGPLLCA----GIAQGIA-SYVLRNAKPPSVFTRISHYRPWINKILRE 225
>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With
Auto Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 98
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 77
L+ ++ P+LS+ CKS+ +IT NM+C G+ EG +DSCQGDSGGP+
Sbjct: 10 LQCLKAPVLSDSSCKSS--YPGQITGNMICVGFLEGGKDSCQGDSGGPV 56
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Query: 228 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
L+ ++ P+LS+ CKS+ +IT NM+C G+ EG +DSCQGDSGGP+
Sbjct: 10 LQCLKAPVLSDSSCKSS--YPGQITGNMICVGFLEGGKDSCQGDSGGPV 56
>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
pdb|3H7T|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
Length = 235
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GG + + + PW + K +CG +++ V+TAA C++G P +I + G R
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYR 60
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLDE 220
+K S V+ +K+ HP N+ A++E E + + LP D
Sbjct: 61 TTKGTS--VMAKKIYIVRYHP----LTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDP 114
Query: 221 RKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 269
T+ V V KS YS +++ A + R SC+
Sbjct: 115 EPDTS-----VLVSGWGSTNFKSLEYSG-----DLMEANFTVVDRKSCE 153
>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor
Length = 240
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 11/189 (5%)
Query: 114 WIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNESVPVIIRK 173
W+ +L + K CG +LI + VLTA C + K+ + LG HD + + +
Sbjct: 13 WMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLN 72
Query: 174 VKRAIRHP---DFSLSNFNNDIALLEMESGVDF-----EAPQIHPACLPGNSLDERKPTA 225
V + + P D L L + S +D P+ + G
Sbjct: 73 VSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYD 132
Query: 226 NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGK 285
LR + I+ E+C + + +CAG + C+GD GGPL V K
Sbjct: 133 GLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPL---VCEQHK 189
Query: 286 MEATLSKVV 294
M L +V
Sbjct: 190 MRMVLGVIV 198
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG LR + I+ E+C + + +CAG + C+GD
Sbjct: 120 VYGWGYTGLIN-YDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGD 178
Query: 73 SGGPL 77
GGPL
Sbjct: 179 YGGPL 183
>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With
The Sema Domain Of The Met Receptor
Length = 234
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 11/189 (5%)
Query: 114 WIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNESVPVIIRK 173
W+ +L + K CG +LI + VLTA C + K+ + LG HD + + +
Sbjct: 13 WMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLN 72
Query: 174 VKRAIRHP---DFSLSNFNNDIALLEMESGVDF-----EAPQIHPACLPGNSLDERKPTA 225
V + + P D L L + S +D P+ + G
Sbjct: 73 VSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYD 132
Query: 226 NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPLQIAVARPGK 285
LR + I+ E+C + + +CAG + C+GD GGPL V K
Sbjct: 133 GLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPL---VCEQHK 189
Query: 286 MEATLSKVV 294
M L +V
Sbjct: 190 MRMVLGVIV 198
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V GWG LR + I+ E+C + + +CAG + C+GD
Sbjct: 120 VYGWGYTGLIN-YDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGD 178
Query: 73 SGGPL 77
GGPL
Sbjct: 179 YGGPL 183
>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
pdb|1AKS|B Chain B, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
Length = 98
Score = 54.7 bits (130), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 77
L+ ++ P+LS CKS+ +IT NM+C G+ +G +DSCQGDSGGP+
Sbjct: 10 LQCLKAPVLSNSSCKSS--YPGQITGNMICVGFLQGGKDSCQGDSGGPV 56
Score = 54.7 bits (130), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 228 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
L+ ++ P+LS CKS+ +IT NM+C G+ +G +DSCQGDSGGP+
Sbjct: 10 LQCLKAPVLSNSSCKSS--YPGQITGNMICVGFLQGGKDSCQGDSGGPV 56
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 79/245 (32%)
Query: 92 CGQVERNQRIVGGNVTKLHEFPWIAALT----KKGKFYCGATLIAKRHVLTAAHCIEGVN 147
CG V +++ T H+ PW A ++ KG C ++++ VLTAAHC V+
Sbjct: 463 CGMVWEHRK-----GTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-VD 516
Query: 148 PKE--IKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSN---------FNNDIALLE 196
KE IKV++G R + E V + HP+++++ ++ D+AL++
Sbjct: 517 DKEHSIKVSVGGEKRDLEIEVV----------LFHPNYNINGKKEAGIPEFYDYDVALIK 566
Query: 197 MESGVDFEAPQIHPACLP---GNSLDERKPTANSLRK----------VEVPILSEEECK- 242
+++ + + I P CLP G + R P + ++ ++ +SEEE K
Sbjct: 567 LKNKLKY-GQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKL 625
Query: 243 ----------------------SAGYSASR-----ITNNMLCAG----YAEGKRDSCQGD 271
+ GY + +T LC G YA+ ++C+GD
Sbjct: 626 TRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYAD--PNTCRGD 683
Query: 272 SGGPL 276
SGGPL
Sbjct: 684 SGGPL 688
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 52 ITNNMLCAG----YAEGKRDSCQGDSGGPLQI-AVARPGKMEVIACGQV-----ERNQRI 101
+T LC G YA+ ++C+GDSGGPL + +R ++ VI+ G V ++ Q+
Sbjct: 661 VTPRFLCTGGVSPYAD--PNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQ 718
Query: 102 VGGNVTKLH-----EFPWI 115
V + H PW+
Sbjct: 719 VPAHARDFHINLFQVLPWL 737
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 79/245 (32%)
Query: 92 CGQVERNQRIVGGNVTKLHEFPWIAALT----KKGKFYCGATLIAKRHVLTAAHCIEGVN 147
CG V +++ T H+ PW A ++ KG C ++++ VLTAAHC V+
Sbjct: 444 CGMVWEHRK-----GTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-VD 497
Query: 148 PKE--IKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSN---------FNNDIALLE 196
KE IKV++G R + E V + HP+++++ ++ D+AL++
Sbjct: 498 DKEHSIKVSVGGEKRDLEIEVV----------LFHPNYNINGKKEAGIPEFYDYDVALIK 547
Query: 197 MESGVDFEAPQIHPACLP---GNSLDERKPTANSLRK----------VEVPILSEEECK- 242
+++ + + I P CLP G + R P + ++ ++ +SEEE K
Sbjct: 548 LKNKLKY-GQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKL 606
Query: 243 ----------------------SAGYSASR-----ITNNMLCAG----YAEGKRDSCQGD 271
+ GY + +T LC G YA+ ++C+GD
Sbjct: 607 TRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYAD--PNTCRGD 664
Query: 272 SGGPL 276
SGGPL
Sbjct: 665 SGGPL 669
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 52 ITNNMLCAG----YAEGKRDSCQGDSGGPLQI-AVARPGKMEVIACGQV-----ERNQRI 101
+T LC G YA+ ++C+GDSGGPL + +R ++ VI+ G V ++ Q+
Sbjct: 642 VTPRFLCTGGVSPYAD--PNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQ 699
Query: 102 VGGNVTKLH-----EFPWI 115
V + H PW+
Sbjct: 700 VPAHARDFHINLFQVLPWL 718
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 79/245 (32%)
Query: 92 CGQVERNQRIVGGNVTKLHEFPWIAALT----KKGKFYCGATLIAKRHVLTAAHCIEGVN 147
CG V +++ T H+ PW A ++ KG C ++++ VLTAAHC V+
Sbjct: 453 CGMVWEHRK-----GTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-VD 506
Query: 148 PKE--IKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSN---------FNNDIALLE 196
KE IKV++G R + E V + HP+++++ ++ D+AL++
Sbjct: 507 DKEHSIKVSVGGEKRDLEIEVV----------LFHPNYNINGKKEAGIPEFYDYDVALIK 556
Query: 197 MESGVDFEAPQIHPACLP---GNSLDERKPTANSLRK----------VEVPILSEEECK- 242
+++ + + I P CLP G + R P + ++ ++ +SEEE K
Sbjct: 557 LKNKLKY-GQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKL 615
Query: 243 ----------------------SAGYSASR-----ITNNMLCAG----YAEGKRDSCQGD 271
+ GY + +T LC G YA+ ++C+GD
Sbjct: 616 TRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADP--NTCRGD 673
Query: 272 SGGPL 276
SGGPL
Sbjct: 674 SGGPL 678
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 52 ITNNMLCAG----YAEGKRDSCQGDSGGPLQI-AVARPGKMEVIACGQV-----ERNQRI 101
+T LC G YA+ ++C+GDSGGPL + +R ++ VI+ G V ++ Q+
Sbjct: 651 VTPRFLCTGGVSPYADP--NTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQ 708
Query: 102 VGGNVTKLH-----EFPWI 115
V + H PW+
Sbjct: 709 VPAHARDFHINLFQVLPWL 727
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 79/245 (32%)
Query: 92 CGQVERNQRIVGGNVTKLHEFPWIAALT----KKGKFYCGATLIAKRHVLTAAHCIEGVN 147
CG V +++ T H+ PW A ++ KG C ++++ VLTAAHC V+
Sbjct: 211 CGMVWEHRK-----GTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-VD 264
Query: 148 PKE--IKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSN---------FNNDIALLE 196
KE IKV++G R + E V + HP+++++ ++ D+AL++
Sbjct: 265 DKEHSIKVSVGGEKRDLEIEVV----------LFHPNYNINGKKEAGIPEFYDYDVALIK 314
Query: 197 MESGVDFEAPQIHPACLP---GNSLDERKPTANSLRK----------VEVPILSEEECK- 242
+++ + + I P CLP G + R P + ++ ++ +SEEE K
Sbjct: 315 LKNKLKY-GQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKL 373
Query: 243 ----------------------SAGYSASR-----ITNNMLCAG----YAEGKRDSCQGD 271
+ GY + +T LC G YA+ ++C+GD
Sbjct: 374 TRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADP--NTCRGD 431
Query: 272 SGGPL 276
SGGPL
Sbjct: 432 SGGPL 436
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 52 ITNNMLCAG----YAEGKRDSCQGDSGGPLQI-AVARPGKMEVIACGQV-----ERNQRI 101
+T LC G YA+ ++C+GDSGGPL + +R ++ VI+ G V ++ Q+
Sbjct: 409 VTPRFLCTGGVSPYADP--NTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQ 466
Query: 102 VGGNVTKLH-----EFPWI 115
V + H PW+
Sbjct: 467 VPAHARDFHINLFQVLPWL 485
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 79/245 (32%)
Query: 92 CGQVERNQRIVGGNVTKLHEFPWIAALT----KKGKFYCGATLIAKRHVLTAAHCIEGVN 147
CG V +++ T H+ PW A ++ KG C ++++ VLTAAHC V+
Sbjct: 219 CGMVWEHRK-----GTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-VD 272
Query: 148 PKE--IKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSN---------FNNDIALLE 196
KE IKV++G R + E V + HP+++++ ++ D+AL++
Sbjct: 273 DKEHSIKVSVGGEKRDLEIEVV----------LFHPNYNINGKKEAGIPEFYDYDVALIK 322
Query: 197 MESGVDFEAPQIHPACLP---GNSLDERKPTANSLRK----------VEVPILSEEECK- 242
+++ + + I P CLP G + R P + ++ ++ +SEEE K
Sbjct: 323 LKNKLKY-GQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKL 381
Query: 243 ----------------------SAGYSASR-----ITNNMLCAG----YAEGKRDSCQGD 271
+ GY + +T LC G YA+ ++C+GD
Sbjct: 382 TRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADP--NTCRGD 439
Query: 272 SGGPL 276
SGGPL
Sbjct: 440 SGGPL 444
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 52 ITNNMLCAG----YAEGKRDSCQGDSGGPLQI-AVARPGKMEVIACGQV-----ERNQRI 101
+T LC G YA+ ++C+GDSGGPL + +R ++ VI+ G V ++ Q+
Sbjct: 417 VTPRFLCTGGVSPYADP--NTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQ 474
Query: 102 VGGNVTKLH-----EFPWI 115
V + H PW+
Sbjct: 475 VPAHARDFHINLFQVLPWL 493
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 74/230 (32%)
Query: 107 TKLHEFPWIAALT----KKGKFYCGATLIAKRHVLTAAHCIEGVNPKE--IKVTLGEHDR 160
T H+ PW A ++ KG C ++++ VLTAAHC V+ KE IKV++G R
Sbjct: 22 TDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-VDDKEHSIKVSVGGEKR 80
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLSN---------FNNDIALLEMESGVDFEAPQIHPA 211
+ E V + HP+++++ ++ D+AL+++++ + + I P
Sbjct: 81 DLEIEVV----------LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKY-GQTIRPI 129
Query: 212 CLP---GNSLDERKPTANSLRK----------VEVPILSEEECK---------------- 242
CLP G + R P + ++ ++ +SEEE K
Sbjct: 130 CLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGS 189
Query: 243 -------SAGYSASR-----ITNNMLCAG----YAEGKRDSCQGDSGGPL 276
+ GY + +T LC G YA+ ++C+GDSGGPL
Sbjct: 190 CERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADP--NTCRGDSGGPL 237
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 52 ITNNMLCAG----YAEGKRDSCQGDSGGPLQI-AVARPGKMEVIACGQV-----ERNQRI 101
+T LC G YA+ ++C+GDSGGPL + +R ++ VI+ G V ++ Q+
Sbjct: 210 VTPRFLCTGGVSPYADP--NTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQ 267
Query: 102 VGGNVTKLH-----EFPWI 115
V + H PW+
Sbjct: 268 VPAHARDFHINLFQVLPWL 286
>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
pdb|3H7O|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
Length = 228
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 36/197 (18%)
Query: 103 GGNVTKLHEFPWIAAL-TKKGK--FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
GG T + + PW A+ T G+ CG ++++ VLTAAHC+ P+ I + E
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQY-EST 60
Query: 160 RLSKN--ESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP--- 214
L ++ +S P + R NDIA+LE+ + + + PA LP
Sbjct: 61 NLWEDPGKSDPYVSHVYLSFYRQ-----ETMENDIAILELSRPLKLDGLKSKPAKLPDIE 115
Query: 215 ----------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCA 258
G ++D P + L+ ++ ++ +EC++ Y ++ + CA
Sbjct: 116 FRPKTGSDVLVSGYGDGQTMD---PKDHDLKSAQLTVVDLDECRTK-YGPIFLSLQVFCA 171
Query: 259 GYAEGKRDSCQGDSGGP 275
+S GD+G P
Sbjct: 172 QKVGVSLES--GDAGDP 186
>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|E Chain E, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|G Chain G, Thrombin:hirudin 51-65 Complex
pdb|1YCP|M Chain M, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 109
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 7/63 (11%)
Query: 217 SLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGY--AEGKR-DSCQGDSG 273
S+ E +P+ L+ V +P++ CK++ + RIT+NM CAGY EGKR D+C+GDSG
Sbjct: 1 SVAEVQPSV--LQVVNLPLVERPVCKAS--TRIRITDNMFCAGYKPGEGKRGDACEGDSG 56
Query: 274 GPL 276
GP
Sbjct: 57 GPF 59
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 5/52 (9%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGY--AEGKR-DSCQGDSGGPL 77
L+ V +P++ CK++ + RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 10 LQVVNLPLVERPVCKAS--TRIRITDNMFCAGYKPGEGKRGDACEGDSGGPF 59
>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|1HYL|B Chain B, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|2HLC|A Chain A, Hl Collagenase Structure At 1.7a Resolution
pdb|2HLC|B Chain B, Hl Collagenase Structure At 1.7a Resolution
Length = 230
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 30/187 (16%)
Query: 112 FPWIA----ALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNESV 167
FP+ A L + + +CG +LI + +LTAAHC+ + + V LG + V
Sbjct: 12 FPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVH--DAVSVVVYLGSAVQYEGEAVV 69
Query: 168 PVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP-----GNSLDERK 222
+R I H F+ + ND+AL+++ V++ I P LP N +
Sbjct: 70 -----NSERIISHSMFNPDTYLNDVALIKIPH-VEY-TDNIQPIRLPSGEELNNKFENIW 122
Query: 223 PTANS----------LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDS 272
T + L+ ++ + C Y I + +C ++GK C GDS
Sbjct: 123 ATVSGWGQSNTDTVILQYTYNLVIDNDRCAQE-YPPGIIVESTICGDTSDGKS-PCFGDS 180
Query: 273 GGPLQIA 279
GGP ++
Sbjct: 181 GGPFVLS 187
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 13 VAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGD 72
V+GWG+ + L+ ++ + C Y I + +C ++GK C GD
Sbjct: 125 VSGWGQSNTDTVI---LQYTYNLVIDNDRCAQE-YPPGIIVESTICGDTSDGKS-PCFGD 179
Query: 73 SGGPLQIA 80
SGGP ++
Sbjct: 180 SGGPFVLS 187
>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor
pdb|3PO1|C Chain C, Thrombin In Complex With Benzothiazole Guanidine
Length = 102
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYA--EGKR-DSCQGDSGGPLQIAVA--- 82
L+ V +PI+ CK + + RIT+NM CAGY EGKR D+C+GDSGGP +
Sbjct: 6 LQVVNLPIVERPVCKDS--TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN 63
Query: 83 RPGKMEVIACGQ 94
R +M +++ G+
Sbjct: 64 RWYQMGIVSWGE 75
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Query: 228 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
L+ V +PI+ CK + + RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 6 LQVVNLPIVERPVCKDS--TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 55
>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin
pdb|1BHX|F Chain F, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|C Chain C, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
Length = 105
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 29 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYA--EGKR-DSCQGDSGGPLQIAVA--- 82
L+ V +PI+ CK + + RIT+NM CAGY EGKR D+C+GDSGGP +
Sbjct: 6 LQVVNLPIVERPVCKDS--TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN 63
Query: 83 RPGKMEVIACGQ 94
R +M +++ G+
Sbjct: 64 RWYQMGIVSWGE 75
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Query: 228 LRKVEVPILSEEECKSAGYSASRITNNMLCAGYA--EGKR-DSCQGDSGGPL 276
L+ V +PI+ CK + + RIT+NM CAGY EGKR D+C+GDSGGP
Sbjct: 6 LQVVNLPIVERPVCKDS--TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPF 55
>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|B Chain B, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|Y Chain Y, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|B Chain B, Kallikrein Complexed With Hirustasin
pdb|1HIA|Y Chain Y, Kallikrein Complexed With Hirustasin
Length = 152
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 14 AGWGRLD---ERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+GWG ++ + + ++ V++ +L C A ++T +MLCAGY G +D+C
Sbjct: 44 SGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADA--HPDKVTESMLCAGYLPGGKDTCM 101
Query: 71 GDSGGPL 77
GDSGGPL
Sbjct: 102 GDSGGPL 108
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 226 NSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
+ ++ V++ +L C A ++T +MLCAGY G +D+C GDSGGPL
Sbjct: 60 DEIQCVQLTLLQNTFCADA--HPDKVTESMLCAGYLPGGKDTCMGDSGGPL 108
>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 99
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 25 TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 77
T L++ +PI+SE +CK + S+IT+ M CAG A G DSC GDSGGPL
Sbjct: 5 TPEKLQQAALPIVSEADCKKSW--GSKITDVMTCAG-ASG-VDSCMGDSGGPL 53
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 224 TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
T L++ +PI+SE +CK + S+IT+ M CAG A G DSC GDSGGPL
Sbjct: 5 TPEKLQQAALPIVSEADCKKSW--GSKITDVMTCAG-ASG-VDSCMGDSGGPL 53
>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|A Chain A, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|X Chain X, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|A Chain A, Kallikrein Complexed With Hirustasin
pdb|1HIA|X Chain X, Kallikrein Complexed With Hirustasin
Length = 80
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 160
I+GG + + PW A+ F CG L+ + VLTAAHC +V LG H+
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHC----KNDNYEVWLGRHN- 55
Query: 161 LSKNESVPVIIRKVKRAIRHPDFSLS 186
L +NE+ V HP F+LS
Sbjct: 56 LFENENTAQFF-GVTADFPHPGFNLS 80
>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d,
A226g) Chymotrypsin
Length = 99
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 25 TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 77
T L++ +PI+SE +CK + S+IT+ M CAG A G DSC GDSGGPL
Sbjct: 5 TPEKLQQAALPIVSEADCKKSW--GSKITDVMTCAG-ASG-VDSCMGDSGGPL 53
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 224 TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
T L++ +PI+SE +CK + S+IT+ M CAG A G DSC GDSGGPL
Sbjct: 5 TPEKLQQAALPIVSEADCKKSW--GSKITDVMTCAG-ASG-VDSCMGDSGGPL 53
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 57/222 (25%)
Query: 102 VGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEI-KVTLGEHDR 160
+ N + PW + K + C LI+ + VLTAAHC N + +V +G+
Sbjct: 233 MSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKS 292
Query: 161 LSKNESVPVIIRKVKRAIRHPDFS---------LSNFNNDIALLEMESGVDFEAPQIHPA 211
E + +++A+ P F L + +DIALL++ V + P
Sbjct: 293 QWGKEFL------IEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKM-STHARPI 345
Query: 212 CLPGN---SLDERKPTANS--------LRKVEVP-------------------------- 234
CLP +L R+P ++ L K VP
Sbjct: 346 CLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAE 405
Query: 235 ILSEEECKSAGYSASR--ITNNMLCAGYAEGKRDSCQGDSGG 274
++S+E+ + R +T+ LC+G E + C+G+SGG
Sbjct: 406 VVSQEKTMFPNLTDVREVVTDQFLCSGTQEDE-SPCKGESGG 446
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 57/222 (25%)
Query: 102 VGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEI-KVTLGEHDR 160
+ N + PW + K + C LI+ + VLTAAHC N + +V +G+
Sbjct: 225 MSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKS 284
Query: 161 LSKNESVPVIIRKVKRAIRHPDFS---------LSNFNNDIALLEMESGVDFEAPQIHPA 211
E + +++A+ P F L + +DIALL++ V + P
Sbjct: 285 QWGKEFL------IEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKM-STHARPI 337
Query: 212 CLPGN---SLDERKPTANS--------LRKVEVP-------------------------- 234
CLP +L R+P ++ L K VP
Sbjct: 338 CLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAE 397
Query: 235 ILSEEECKSAGYSASR--ITNNMLCAGYAEGKRDSCQGDSGG 274
++S+E+ + R +T+ LC+G E + C+G+SGG
Sbjct: 398 VVSQEKTMFPNLTDVREVVTDQFLCSGTQEDE-SPCKGESGG 438
>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|3RU4|E Chain E, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 96
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 25 TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 77
T + L++ +P+LS CK Y ++I + M+CAG A G SC GDSGGPL
Sbjct: 2 TPDRLQQASLPLLSNTNCKK--YWGTKIKDAMICAG-ASGV-SSCMGDSGGPL 50
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 224 TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
T + L++ +P+LS CK Y ++I + M+CAG A G SC GDSGGPL
Sbjct: 2 TPDRLQQASLPLLSNTNCKK--YWGTKIKDAMICAG-ASGV-SSCMGDSGGPL 50
>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|G Chain G, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|C Chain C, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|H Chain H, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|C Chain C, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|H Chain H, Bovine Chymotrypsin Complexed To Bpti
pdb|1VGC|C Chain C, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic
Acid Inhibitor Complex
pdb|2VGC|C Chain C, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic
Acid Inhibitor Complex
pdb|3VGC|C Chain C, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|C Chain C, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|C Chain C, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third
Domain Complexed With Alpha-Chymotrypsin
pdb|1GG6|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The
Active Site
pdb|1GGD|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|C Chain C, Crystal Structure Of A Complex Between Bovine
Chymotrypsin And Ecotin
pdb|1YPH|E Chain E, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|F Chain F, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|C Chain C, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|G Chain G, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|C Chain C, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|G Chain G, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|G Chain G, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|G Chain G, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|G Chain G, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone
Inhibitor Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone
Inhibitor Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|G Chain G, Crystal And Molecular Structures Of The Complex Of
Alpha- Chymotrypsin With Its Inhibitor Turkey Ovomucoid
Third Domain At 1.8 Angstroms Resolution
pdb|1GHA|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|G Chain G, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|G Chain G, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|G Chain G, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To
pH 10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|C Chain C, Structure Of Alpha-Chymotrypsin Refined At 1.68
Angstroms Resolution
pdb|4CHA|G Chain G, Structure Of Alpha-Chymotrypsin Refined At 1.68
Angstroms Resolution
pdb|5CHA|C Chain C, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|G Chain G, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|C Chain C, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|G Chain G, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|G Chain G, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin
With Its Own Autolysis Products
pdb|3BG4|C Chain C, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An
Elastase-Specific Inhibitor
pdb|1GCT|C Chain C, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct
Of Gamma- Chymotrypsin?
pdb|2GCT|C Chain C, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To
Ph 10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|C Chain C, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|C Chain C, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
Length = 97
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 25 TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 77
T + L++ +P+LS CK Y ++I + M+CAG A G SC GDSGGPL
Sbjct: 3 TPDRLQQASLPLLSNTNCKK--YWGTKIKDAMICAG-ASGV-SSCMGDSGGPL 51
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 224 TANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
T + L++ +P+LS CK Y ++I + M+CAG A G SC GDSGGPL
Sbjct: 3 TPDRLQQASLPLLSNTNCKK--YWGTKIKDAMICAG-ASGV-SSCMGDSGGPL 51
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 14/132 (10%)
Query: 91 ACGQVERNQRIVGGNVTKLHEFPWIAALTK-KGKFYCGATLIAKRHVLTAAHCIEGVNPK 149
ACG + +R L + PW LT +GK +CG +I + VLT A C
Sbjct: 89 ACGVLTSEKR-----APDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNI 143
Query: 150 EIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIH 209
+K +R S++ P++I K+ H + ND++LLE+E + +
Sbjct: 144 TVKTYF---NRTSQD---PLMI-KITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGL- 195
Query: 210 PACLPGNSLDER 221
P C P E
Sbjct: 196 PVCTPEKDFAEH 207
>pdb|2HNT|C Chain C, Crystallographic Structure Of Human Gamma-Thrombin
Length = 70
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 101 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCI------EGVNPKEIK 152
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 153 VTLGEHDR 160
V +G+H R
Sbjct: 61 VRIGKHSR 68
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 91 ACGQVERNQRIVGGNVTKLHEFPWIAALTK-KGKFYCGATLIAKRHVLTAAHCIEGVNPK 149
ACG + +R L + PW LT +GK +CG +I + VLT A C + +
Sbjct: 48 ACGVLTSEKR-----APDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKC--SLLHR 100
Query: 150 EIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIH 209
I V ++ P++I K+ H + ND++LLE+E + +
Sbjct: 101 NITVK----TYFNRTSQDPLMI-KITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGL- 154
Query: 210 PACLPGNSLDER 221
P C P E
Sbjct: 155 PVCTPEKDFAEH 166
>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP
Length = 234
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 27/182 (14%)
Query: 113 PWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNP--KEIKVTLGEHDRLSKNESVPV 169
PW +L ++G+ +CG +L+ ++ +LTA C + +V LG + ++ +
Sbjct: 10 PWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSL 69
Query: 170 IIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGN------------- 216
V + + P S + LL++E V ++ CLP
Sbjct: 70 QRVPVAKMVCGPSGS------QLVLLKLERSVTLNQ-RVALICLPPEWYVVPPGTKCEIA 122
Query: 217 SLDERKPTANS--LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGG 274
E K T N L + ++S +EC R+ + +C +C+GD GG
Sbjct: 123 GWGETKGTGNDTVLNVALLNVISNQECNIK--HRGRVRESEMCTEGLLAPVGACEGDYGG 180
Query: 275 PL 276
PL
Sbjct: 181 PL 182
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 13 VAGWGRLDERKPTANS--LRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRDSCQ 70
+AGWG E K T N L + ++S +EC R+ + +C +C+
Sbjct: 121 IAGWG---ETKGTGNDTVLNVALLNVISNQECNIK--HRGRVRESEMCTEGLLAPVGACE 175
Query: 71 GDSGGPL 77
GD GGPL
Sbjct: 176 GDYGGPL 182
>pdb|1EPT|A Chain A, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 43
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHC 142
IVGG + P+ +L G +CG +LI + V++AAHC
Sbjct: 1 IVGGYTCAANSIPYQVSLNS-GSHFCGGSLINSQWVVSAAHC 41
>pdb|1EPT|B Chain B, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 82
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 151 IKVTLGEH--DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMES 199
I+V LGEH D L NE + I HP+F+ + +NDI L+++ S
Sbjct: 3 IQVRLGEHNIDVLEGNEQ----FINAAKIITHPNFNGNTLDNDIMLIKLSS 49
>pdb|3TBF|A Chain A, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|B Chain B, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|C Chain C, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|D Chain D, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|E Chain E, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|F Chain F, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|G Chain G, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|H Chain H, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis
Length = 372
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 187 NFNNDIALLEMESGVDFEAPQI----------HPACLPGNSLDERKPTANSL 228
NF+N I +LE+++G DF AP + H A + G +D+ + A S+
Sbjct: 319 NFDNSI-VLELDAGHDFSAPVVFTIPLQLLSYHVAIIKGTDVDQPRNLAKSV 369
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 200 GVDFEAPQIHPACLPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
GVD + P LP D K +K+ V IL+ + +S S++T + G
Sbjct: 194 GVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDG 253
Query: 260 YAE 262
A+
Sbjct: 254 VAQ 256
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 200 GVDFEAPQIHPACLPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 259
GVD + P LP D K +K+ V IL+ + +S S++T + G
Sbjct: 196 GVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDG 255
Query: 260 YAE 262
A+
Sbjct: 256 VAQ 258
>pdb|3ERF|A Chain A, Crystal Structure Of Gtt2 From Saccharomyces Cerevisiae
pdb|3ERG|A Chain A, Crystal Structure Of Gtt2 From Saccharomyces Cerevisiae In
Complex With Glutathione Sulfnate
pdb|3ERG|B Chain B, Crystal Structure Of Gtt2 From Saccharomyces Cerevisiae In
Complex With Glutathione Sulfnate
pdb|3IBH|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gtt2 In
Complex With Glutathione
Length = 233
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 145 GVNPKEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESG 200
G P +++ L E + LS + V + + K + + P+F N++ + +LE++ G
Sbjct: 27 GPYPARVRIALAEKNMLSSVQFVRINLWKGEH--KKPEFLAKNYSGTVPVLELDDG 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,974,944
Number of Sequences: 62578
Number of extensions: 352819
Number of successful extensions: 2379
Number of sequences better than 100.0: 359
Number of HSP's better than 100.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 708
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)