RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8651
(302 letters)
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 215 bits (550), Expect = 1e-69
Identities = 78/195 (40%), Positives = 110/195 (56%), Gaps = 22/195 (11%)
Query: 100 RIVGGNVTKLHEFPWIAALT-KKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH 158
RIVGG+ + FPW +L G+ +CG +LI+ R VLTAAHC+ G +P I+V LG H
Sbjct: 1 RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCVRGSDPSNIRVRLGSH 60
Query: 159 DRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLP---- 214
D S E + KV + I HP+++ S ++NDIALL+++ V + P CLP
Sbjct: 61 DLSSGEEGQ---VIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTLS-DNVRPICLPSSNY 116
Query: 215 -------------GNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYA 261
G + + ++L++V VPI+S C+ A IT+NMLCAG
Sbjct: 117 NVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGAITDNMLCAGGL 176
Query: 262 EGKRDSCQGDSGGPL 276
EG +D+CQGDSGGPL
Sbjct: 177 EGGKDACQGDSGGPL 191
Score = 103 bits (260), Expect = 1e-26
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 2 DEANYTGKIGIVAGWGRLDERKPT-ANSLRKVEVPILSEEECKSAGYSASRITNNMLCAG 60
+ G V+GWGR E + ++L++V VPI+S C+ A IT+NMLCAG
Sbjct: 115 NYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGAITDNMLCAG 174
Query: 61 YAEGKRDSCQGDSGGPL 77
EG +D+CQGDSGGPL
Sbjct: 175 GLEGGKDACQGDSGGPL 191
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 214 bits (547), Expect = 3e-69
Identities = 79/193 (40%), Positives = 107/193 (55%), Gaps = 20/193 (10%)
Query: 101 IVGGNVTKLHEFPWIAALT-KKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG+ K+ FPW +L G+ +CG +LI+ R VLTAAHC+ P V LG HD
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHD 60
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNS-- 217
S + KVK+ I HP+++ S ++NDIALL+++ V + + P CLP +
Sbjct: 61 LSSNEG--GGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTL-SDNVRPICLPSSGYN 117
Query: 218 --------------LDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEG 263
E P + L++V VPI+S ECK A IT+NMLCAG EG
Sbjct: 118 LPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEG 177
Query: 264 KRDSCQGDSGGPL 276
+D+CQGDSGGPL
Sbjct: 178 GKDACQGDSGGPL 190
Score = 109 bits (275), Expect = 1e-28
Identities = 38/72 (52%), Positives = 46/72 (63%)
Query: 6 YTGKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 65
G V+GWGR E P + L++V VPI+S ECK A IT+NMLCAG EG
Sbjct: 119 PAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEGG 178
Query: 66 RDSCQGDSGGPL 77
+D+CQGDSGGPL
Sbjct: 179 KDACQGDSGGPL 190
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 151 bits (383), Expect = 7e-45
Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 26/192 (13%)
Query: 101 IVGGNVTKLHEFPWIAALTKKGKFY-CGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 159
IVGG+ + FPW +L + CG +LI++ VLTAAHC+ N K ++V LG H+
Sbjct: 1 IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCVS--NAKSVRVVLGAHN 58
Query: 160 RLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLD 219
+ + VK+ I HP+++ NDIALL+++S V + P CLP S D
Sbjct: 59 IVLREGGEQKF--DVKKVIVHPNYNPDTD-NDIALLKLKSPVTL-GDTVRPICLPTASSD 114
Query: 220 ERKPT---------------ANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGK 264
T ++L++V VP++S E C+SA +T+NM+CAG G
Sbjct: 115 LPVGTTCTVSGWGNTKTLGLPDTLQEVTVPVVSRETCRSAYG--GTVTDNMICAGA--GG 170
Query: 265 RDSCQGDSGGPL 276
+D+CQGDSGGPL
Sbjct: 171 KDACQGDSGGPL 182
Score = 75.6 bits (186), Expect = 3e-16
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 8 GKIGIVAGWGRLDERKPTANSLRKVEVPILSEEECKSAGYSASRITNNMLCAGYAEGKRD 67
G V+GWG ++L++V VP++S E C+SA +T+NM+CAG G +D
Sbjct: 118 GTTCTVSGWGNTKTLGL-PDTLQEVTVPVVSRETCRSAYGG--TVTDNMICAGA--GGKD 172
Query: 68 SCQGDSGGPL 77
+CQGDSGGPL
Sbjct: 173 ACQGDSGGPL 182
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 80.7 bits (199), Expect = 3e-17
Identities = 54/210 (25%), Positives = 80/210 (38%), Gaps = 40/210 (19%)
Query: 100 RIVGGNVTKLHEFPWIAALTKKGKF-----YCGATLIAKRHVLTAAHCIEGVNPKEIKVT 154
RI+GG+ E+P + AL + +CG + + R+VLTAAHC + +P V
Sbjct: 32 RIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVN 91
Query: 155 LGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNNDIALLEMESGVDFEAPQIHPA--- 211
D L+ + V+ H +S N NDIA+LE+ +I
Sbjct: 92 RVVVD-LNDSSQAERG--HVRTIYVHEFYSPGNLGNDIAVLELARAASLPRVKITSFDAS 148
Query: 212 -----CLPGNSLDE--------------RKPTANSLRKVEVPILSEEECKS------AGY 246
+ S P L +V V + C A
Sbjct: 149 DTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASD 208
Query: 247 SASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
A+ +T CAG +D+CQGDSGGP+
Sbjct: 209 GATGLTG--FCAGRP--PKDACQGDSGGPI 234
Score = 33.7 bits (77), Expect = 0.094
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 24 PTANSLRKVEVPILSEEECKS------AGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 77
P L +V V + C A A+ +T CAG +D+CQGDSGGP+
Sbjct: 179 PKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTG--FCAGRP--PKDACQGDSGGPI 234
Query: 78 QIAVAR-PGKMEVIACGQVERNQRIVGGNVTKLHEF-PWIAALTK 120
+ V++ G ++ G T + + WIAA+T
Sbjct: 235 FHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMTN 279
>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism].
Length = 251
Score = 38.1 bits (89), Expect = 0.003
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 77 LQIAVARPGKMEVIACGQVERNQRIVGGN-----VTKLHEFPW--IAAL-TKKGKFYCGA 128
L I + G + VE Q+ VT +FP+ + G+ A
Sbjct: 13 LTILTSAAG----VGATAVEEPQQTASAEDDRTQVTDTTQFPYSAVVQFEAATGRLCTAA 68
Query: 129 TLIAKRHVLTAAHCI 143
TLI VLTA HCI
Sbjct: 69 TLIGPNTVLTAGHCI 83
>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family
includes trypsin like peptidase domains.
Length = 138
Score = 36.8 bits (85), Expect = 0.003
Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 30/148 (20%)
Query: 132 AKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNESVPVIIRKVKRAIRHPDFSLSNFNND 191
+ +LT AH +E + EI+V L + +V + D L D
Sbjct: 8 SDGLILTNAHVVEDADASEIEVVLPDG-------------GRVPAEVVAADPDL-----D 49
Query: 192 IALLEMESGVDFEAPQIHPACLPGNSLDERKPTANSLRKVEVPILSEEECKSAGYSASRI 251
+ALL+++ + AP + P S+ V P G +
Sbjct: 50 LALLKVDGPLLPAAPLL---------ASSAAPLGGSVVVVGGPGGIGLGASGGGGGVGGL 100
Query: 252 TNNMLCAGYAEGKRDSCQ---GDSGGPL 276
+ L G SGGP+
Sbjct: 101 VSGSLGGVDGRYILTDADTSPGSSGGPV 128
>gnl|CDD|217716 pfam03761, DUF316, Domain of unknown function (DUF316). This
family of proteins with unknown function are from
Caenorhabditis elegans. The protein has GO references
indicating the protein is a positive regulator of growth
rate and is also involved in nematode larval
development.
Length = 280
Score = 36.2 bits (84), Expect = 0.012
Identities = 44/218 (20%), Positives = 67/218 (30%), Gaps = 46/218 (21%)
Query: 92 CGQ--VERNQRIVGGNVTKLHEFPWIAALTKK----GKFYCGATLIAKRHVLTAAHCIEG 145
CG + + + G + E+PW+ + + AT I+ RH+LT++
Sbjct: 31 CGNKTLPLPSQNINGIYLEKSEYPWLVKAAFQNGNQKNYKPPATFISTRHILTSSRLFLN 90
Query: 146 VNPKEIKVTL--GEHDRLSKNESVP------VIIR-------------KVKRAIRHP--D 182
K T + VP I + RA
Sbjct: 91 GKMLNWKNTGDNDTCSGGLGHLEVPPEVLDKFDIMDLSKKKGKNSFRDNITRAYVLNICA 150
Query: 183 FSLSNFNNDIALLEMESGVDFEAPQIHPACLPGNSLDERKPTANSLRKVEV----PILSE 238
+ S F+ + +E ++ P I CL S SL K + I S
Sbjct: 151 NTKSKFDLSAKPMLVE--LEGPEPNISYPCLADES--------TSLEKGDAVDVYGIDSS 200
Query: 239 EECKSAGYSASRITNNMLCAGYAEGKRDSCQGDSGGPL 276
E K I N + C+GD GGPL
Sbjct: 201 GELKH---RKLNIVNCYSNDLSIGTDQYLCKGDDGGPL 235
>gnl|CDD|220189 pfam09342, DUF1986, Domain of unknown function (DUF1986). This
domain is found in serine proteases and is predicted to
contain disulphide bonds.
Length = 267
Score = 33.9 bits (77), Expect = 0.070
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 105 NVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKE--IKVTLGEHDRLS 162
+ +PWIA + +G + C LI VL + C+ + + I V LG H L
Sbjct: 9 TFKEELHWPWIAKVYVEGNYRCTGVLIDLSWVLVSHSCLWDTSLEHSYISVVLGGHKTLK 68
Query: 163 KNESVPVIIRKV 174
+ I +V
Sbjct: 69 SVKGPYEQIYRV 80
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase,
flavoprotein subunit, Bacillus subtilis subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in the low-GC
Gram-positive bacteria and a few other lineages. This
enzyme may act in a complete or partial TCA cycle, or
act in the opposite direction as fumarate reductase. In
some but not all species, succinate dehydrogenase and
fumarate reductase may be encoded as separate isozymes
[Energy metabolism, TCA cycle].
Length = 603
Score = 29.4 bits (66), Expect = 2.7
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 198 ESGVDFEAP---QIHPACLPGNSLDERKPT--ANSLR 229
E G F P QIHP +P + + K + SLR
Sbjct: 218 EQGAYFANPEFIQIHPTAIPVDGTWQSKLRLMSESLR 254
>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like
domain. DDI1_N DDI1 (DNA damage inducible protein 1)
has an amino-terminal ubiquitin-like domain, an
retroviral protease-like (RVP-like) domain, and a UBA
(ubiquitin-associated) domain. This CD represents the
amino-terminal ubiquitin-like domain of DDI1.
Length = 71
Score = 26.9 bits (60), Expect = 3.2
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 181 PDFSLSNFNNDIALLEMESGVDFEAPQI 208
PD L NF AL E ESG+ Q+
Sbjct: 18 PDLELENFK---ALCEAESGIPASQQQL 42
>gnl|CDD|226828 COG4393, COG4393, Predicted membrane protein [Function unknown].
Length = 405
Score = 28.6 bits (64), Expect = 3.8
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 18/64 (28%)
Query: 76 PLQIAVARP-----GKMEVIACGQVERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATL 130
P ++ +P G M VI QV KLH F +IA K +F+ L
Sbjct: 274 PPALSEPQPVQPDEGNMVVIPIEQVRDG---------KLHRFVYIADDGKAVRFF----L 320
Query: 131 IAKR 134
I KR
Sbjct: 321 INKR 324
>gnl|CDD|176492 cd08762, Cyt_b561_CYBASC3, Vertebrate cytochrome b(561), CYBASC3
gene product. Cytochrome b ascorbate-dependent 3, as
found in vertebrates, which might act as a
ferric-chelate reductase, catalyzing the reduction of
Fe(3+) to Fe(2+), such as associated with the transport
of iron from the endosome to the cytoplasm. It is
assumed that this protein uses ascorbate as the electron
donor. Belongs to the cytochrome b(561) family, which
are secretory vesicle-specific electron transport
proteins. Cytochromes b(561) are integral membrane
proteins that bind two heme groups non-covalently, and
may have six alpha-helical trans-membrane segments.
Length = 179
Score = 28.3 bits (63), Expect = 4.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 114 WIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPK 149
W+ AL K + GA ++ VL+ A CI G+N K
Sbjct: 138 WLRALVKPIHVFFGAMIL----VLSIASCISGINEK 169
>gnl|CDD|237585 PRK14015, pepN, aminopeptidase N; Provisional.
Length = 875
Score = 28.2 bits (64), Expect = 7.1
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 174 VKRAIRHPDFSLSNFN 189
V+ ++HP F L N N
Sbjct: 769 VRALMQHPAFDLKNPN 784
>gnl|CDD|221331 pfam11940, DUF3458, Domain of unknown function (DUF3458). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is typically between 402 to 419 amino acids
in length. This domain is found associated with
pfam01433. This domain has a conserved FSAPV sequence
motif.
Length = 365
Score = 27.9 bits (63), Expect = 7.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 174 VKRAIRHPDFSLSNFN 189
VK ++HP F L N N
Sbjct: 303 VKALMQHPAFDLKNPN 318
>gnl|CDD|233858 TIGR02414, pepN_proteo, aminopeptidase N, Escherichia coli type.
The M1 family of zinc metallopeptidases contains a
number of distinct, well-separated clades of proteins
with aminopeptidase activity. Several are designated
aminopeptidase N, EC 3.4.11.2, after the Escherichia
coli enzyme, suggesting a similar activity profile (see
SP|P04825 for a description of catalytic activity). This
family consists of all aminopeptidases closely related
to E. coli PepN and presumed to have similar (not
identical) function. Nearly all are found in
Proteobacteria, but members are found also in
Cyanobacteria, plants, and apicomplexan parasites. This
family differs greatly in sequence from the family of
aminopeptidases typified by Streptomyces lividans PepN
(TIGR02412), from the membrane bound aminopeptidase N
family in animals, etc [Protein fate, Degradation of
proteins, peptides, and glycopeptides].
Length = 863
Score = 27.7 bits (62), Expect = 9.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 168 PVIIRKVKRAIRHPDFSLSNFNNDIALL 195
P + +VK ++HP F L N N AL+
Sbjct: 753 PDTLERVKALLQHPAFDLKNPNRVRALI 780
>gnl|CDD|205932 pfam13758, Prefoldin_3, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 97
Score = 26.1 bits (58), Expect = 9.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 146 VNPKEIKVTLGEHDRL--SKNESVPVIIRK---VKRAI 178
VN KEIK LGE + ++ + V +I R+ VK+ I
Sbjct: 45 VNEKEIKEILGEKQGITRTRQQVVDLISRRIDYVKQNI 82
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.388
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,969,074
Number of extensions: 1387356
Number of successful extensions: 916
Number of sequences better than 10.0: 1
Number of HSP's gapped: 897
Number of HSP's successfully gapped: 24
Length of query: 302
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 206
Effective length of database: 6,679,618
Effective search space: 1376001308
Effective search space used: 1376001308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)