BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy866
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 75.1 bits (183), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 34/39 (87%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
VTHW P+FHAYFP+ NSYP+++ADMLS AI CIGF+W+
Sbjct: 68 VTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWI 106
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 31/39 (79%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
VTHW P F AYFP+ +SYP++LADML AIGCIGFSW
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 31/39 (79%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
VTHW P F AYFP+ +SYP++LADML AIGCIGFSW
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 31/39 (79%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
VTHW P F AYFP+ +SYP++LADML AIGCIGFSW
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
V HWQ P HAY+P+ S+PS+L DML+DAI C+GF+W
Sbjct: 73 VVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 111
>pdb|2VD3|A Chain A, The Structure Of Histidine Inhibited Hisg From
Methanobacterium Thermoautotrophicum
pdb|2VD3|B Chain B, The Structure Of Histidine Inhibited Hisg From
Methanobacterium Thermoautotrophicum
Length = 289
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 24 THWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVFEL-QERKRKDDLAYKRSFFVR 82
+ QHP+ F P +AD +D +G G+ + E + + +DL Y R+ V
Sbjct: 40 SKTQHPQIEVMFSRAADIPEFVADGAAD-LGITGYDLIVERGSDVEILEDLKYGRASLVL 98
Query: 83 MV-SDPKIYNPK 93
D I P+
Sbjct: 99 AAPEDSTIRGPE 110
>pdb|2APN|A Chain A, Hi1723 Solution Structure
Length = 114
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 54 GCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDP 87
GC GF + F E+ DL ++S V++V DP
Sbjct: 41 GCSGFQYGFTFDEKVNDGDLTIEKS-GVQLVIDP 73
>pdb|3UK8|A Chain A, The Crystal Structure Of The Cd-Bound Domain 3 Of The
Cadmium Carbonic Anhydrase From Marine Diatom
Thalassiosira Weissflogii
pdb|3UK8|B Chain B, The Crystal Structure Of The Cd-Bound Domain 3 Of The
Cadmium Carbonic Anhydrase From Marine Diatom
Thalassiosira Weissflogii
Length = 231
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 42 PSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFF 80
PSV D SD +GC GF F+L R DD+ Y R F
Sbjct: 111 PSVHGDHSSDMLGC-GF---FKLWLTGRFDDMGYPRPEF 145
>pdb|2ATC|A Chain A, Crystal And Molecular Structures Of Native And
Ctp-Liganded Aspartate Carbamoyltransferase From
Escherichia Coli
Length = 305
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 17 HFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW-----VFELQERKRKD 71
H L+ + + RF+ P + P + DML + G +W + E+ R +K+
Sbjct: 170 HSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEK----GIAWSLHSSIEEVMTRVQKE 225
Query: 72 DL------AYKRSFFVRMVSDPKIYNPKI 94
L K F VR S ++N K+
Sbjct: 226 RLDPSEYAXVKAQFLVRANSLGGLHNAKM 254
>pdb|3BOB|A Chain A, Carbonic Anhydrase From Marine Diatom Thalassiosira
Weissflo Cadmium Bound Domain 2
pdb|3BOC|A Chain A, Carbonic Anhydrase From Marine Diatom Thalassiosira
Weissflo Bound Domain 2 (Cdca1-R2)
pdb|3BOE|A Chain A, Carbonic Anhydrase From Marine Diatom Thalassiosira
Weissflo Cadmium Bound Domain 2 With Acetate (Cdca1-R2)
Length = 210
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 42 PSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFF 80
PSV D SD +GC GF F+L R DD+ Y R F
Sbjct: 90 PSVHGDHSSDMLGC-GF---FKLWVTGRFDDMGYPRPQF 124
>pdb|3BOH|A Chain A, Carbonic Anhydrase From Marine Diatom Thalassiosira
Weissflo Cadmium Bound Domain 1 With Acetate (Cdca1-R1)
pdb|3BOH|B Chain B, Carbonic Anhydrase From Marine Diatom Thalassiosira
Weissflo Cadmium Bound Domain 1 With Acetate (Cdca1-R1)
pdb|3BOJ|A Chain A, Carbonic Anhydrase From Marine Diatom Thalassiosira
Weissflo Cadmium Bound Domain 1 Without Bound Metal
(Cdca1-R1)
Length = 213
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 42 PSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFF 80
PSV D SD +GC GF F+L R DD+ Y R F
Sbjct: 93 PSVHGDHSSDMLGC-GF---FKLWVTGRFDDMGYPRPQF 127
>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
pdb|3DZZ|B Chain B, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
Length = 391
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 57 GFSWVFELQERKRKDDLAYKRSFFVRMVSDPKIYN 91
G W+ EL++ R D+ AY R F + V + K+ +
Sbjct: 284 GHDWLRELKQVLR-DNFAYAREFLAKEVPEVKVLD 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,464,099
Number of Sequences: 62578
Number of extensions: 113570
Number of successful extensions: 277
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 12
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)