BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy866
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48861|DDC_MANSE Aromatic-L-amino-acid decarboxylase OS=Manduca sexta GN=Ddc PE=2
SV=1
Length = 508
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 35/39 (89%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
VTHWQ PRFHAYFP+ NSYPS++ADMLS AI CIGF+W+
Sbjct: 68 VTHWQSPRFHAYFPTANSYPSIVADMLSGAIACIGFTWI 106
>sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster
GN=Ddc PE=1 SV=4
Length = 510
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 34/39 (87%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
VTHW P+FHAYFP+ NSYP+++ADMLS AI CIGF+W+
Sbjct: 103 VTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWI 141
>sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc
PE=3 SV=2
Length = 510
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 34/39 (87%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
VTHW P+FHAYFP+ NSYP+++ADMLS AI CIGF+W+
Sbjct: 103 VTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWI 141
>sp|P22781|DDC_CAVPO Aromatic-L-amino-acid decarboxylase OS=Cavia porcellus GN=DDC PE=2
SV=1
Length = 480
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
VTHW P F AYFP+ NSYPS+LADML AI CIGFSW
Sbjct: 68 VTHWNSPYFFAYFPTANSYPSMLADMLCGAISCIGFSW 105
>sp|P27718|DDC_BOVIN Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2
Length = 487
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 31/38 (81%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
VTHW P F AYFP+ +SYP++LADML AIGCIGFSW
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105
>sp|Q05733|DCHS_DROME Histidine decarboxylase OS=Drosophila melanogaster GN=Hdc PE=2 SV=2
Length = 847
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
+THWQ P HAYFP+ NS PS+L DML+DAI C+GF+W
Sbjct: 68 ITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTW 105
>sp|P14173|DDC_RAT Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc
PE=1 SV=1
Length = 480
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 31/38 (81%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
VTHW P F AYFP+ +SYP++LADML AIGCIGFSW
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105
>sp|P20711|DDC_HUMAN Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1
SV=2
Length = 480
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 31/38 (81%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
VTHW P F AYFP+ +SYP++LADML AIGCIGFSW
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105
>sp|O88533|DDC_MOUSE Aromatic-L-amino-acid decarboxylase OS=Mus musculus GN=Ddc PE=2
SV=1
Length = 480
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 31/38 (81%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
VTHW P F AYFP+ +SYP++LADML AIGCIGFSW
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105
>sp|P80041|DDC_PIG Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2
Length = 486
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 31/38 (81%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
VTHW P F AYFP+ +SYP++LADML AIGCIGFSW
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105
>sp|Q5EA83|DCHS_BOVIN Histidine decarboxylase OS=Bos taurus GN=HDC PE=2 SV=1
Length = 658
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
V HWQ P HAY+P+ S+PS+L DML+DAI C+GF+W
Sbjct: 69 VVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTW 106
>sp|P19113|DCHS_HUMAN Histidine decarboxylase OS=Homo sapiens GN=HDC PE=1 SV=2
Length = 662
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
V HWQ P HAY+P+ S+PS+L DML+DAI C+GF+W
Sbjct: 69 VVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTW 106
>sp|P23738|DCHS_MOUSE Histidine decarboxylase OS=Mus musculus GN=Hdc PE=1 SV=2
Length = 662
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
V HWQ P HAY+P+ S+PS+L DML+DAI C+GF+W
Sbjct: 76 VVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 114
>sp|P16453|DCHS_RAT Histidine decarboxylase OS=Rattus norvegicus GN=Hdc PE=2 SV=2
Length = 656
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
V HWQ P HAY+P+ S+PS+L DML+DAI C+GF+W
Sbjct: 72 VVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTW 109
>sp|O96571|DDC_DROLE Aromatic-L-amino-acid decarboxylase (Fragment) OS=Drosophila
lebanonensis GN=Ddc PE=3 SV=1
Length = 403
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 29/32 (90%)
Query: 30 RFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
+FHAYFP+ NSYP+++ADMLS AI CIGF+W+
Sbjct: 1 KFHAYFPTANSYPAIVADMLSGAIACIGFTWI 32
>sp|P18486|L2AM_DROME Alpha-methyldopa hypersensitive protein OS=Drosophila melanogaster
GN=amd PE=2 SV=2
Length = 510
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
+THWQ P HAY+P+ SYPS++ +ML+ G IGFSW+
Sbjct: 68 LTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSWI 106
>sp|Q8RY79|TYDC1_ARATH Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1
Length = 490
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
VTHWQ P F AY+PS +S L +MLS +G +GFSWV
Sbjct: 79 VTHWQSPSFFAYYPSNSSVAGFLGEMLSAGLGIVGFSWV 117
>sp|Q7XHL3|TYDC1_ORYSJ Tyrosine decarboxylase 1 OS=Oryza sativa subsp. japonica
GN=Os07g0437500 PE=2 SV=1
Length = 497
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
VTHWQ P + AY+PS +S L +MLS A +GFSW+
Sbjct: 84 VTHWQSPNYFAYYPSNSSTAGFLGEMLSAAFNIVGFSWI 122
>sp|Q06087|TYDC3_PETCR Tyrosine decarboxylase 3 OS=Petroselinum crispum GN=TYRDC-3 PE=2
SV=1
Length = 516
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
+THWQ P F AYFPS S L +MLS +GF+W+
Sbjct: 89 ITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNWM 127
>sp|Q06086|TYDC2_PETCR Tyrosine decarboxylase 2 OS=Petroselinum crispum GN=TYRDC-2 PE=2
SV=1
Length = 514
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
+THWQ P F AYFPS S L +MLS +GF+W+
Sbjct: 87 ITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNWM 125
>sp|Q06085|TYDC1_PETCR Tyrosine decarboxylase 1 (Fragment) OS=Petroselinum crispum
GN=TYRDC-1 PE=2 SV=1
Length = 432
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
+THWQ P F AYFPS S L +MLS +GF+W+
Sbjct: 64 ITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNWM 102
>sp|Q06088|TYDC4_PETCR Tyrosine decarboxylase 4 OS=Petroselinum crispum GN=TYRDC-4 PE=2
SV=1
Length = 508
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
+THWQ P F AYFPS S L +MLS +GF+W+
Sbjct: 88 ITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNWM 126
>sp|P54770|TYDC3_PAPSO Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferum GN=TYDC3 PE=2
SV=2
Length = 533
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFFVR 82
+THWQ P ++AYFPS S L +MLS +GF+W + + +F +
Sbjct: 89 LTHWQSPNYYAYFPSSGSVAGFLGEMLSTGFNVVGFNW---MSSPAATELEGIVMDWFGK 145
Query: 83 MVSDPKIY 90
M++ PK Y
Sbjct: 146 MLNLPKSY 153
>sp|P54769|TYDC2_PAPSO Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum GN=TYDC2 PE=2
SV=1
Length = 531
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
+THWQ P ++AYFPS S L +MLS +GF+W+
Sbjct: 89 LTHWQSPNYYAYFPSSGSVAGFLGEMLSTGFNVVGFNWM 127
>sp|P54771|TYDC5_PAPSO Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferum GN=TYDC5 PE=2
SV=1
Length = 523
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
+THWQ P + AYFPS S L +MLS +GF+W+
Sbjct: 85 ITHWQSPNYFAYFPSSGSVAGFLGEMLSSGFNVVGFNWM 123
>sp|P34751|DDC_CAEEL Probable aromatic-L-amino-acid decarboxylase OS=Caenorhabditis
elegans GN=hdl-1 PE=2 SV=3
Length = 905
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
++H HP FH+++P+GNS+ +LAD+L IG GF W
Sbjct: 410 LSHSSHPNFHSFYPAGNSFHCLLADLLGGHIGDAGFYWT 448
>sp|P54768|TYDC1_PAPSO Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum GN=TYDC1 PE=2
SV=1
Length = 518
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
+THWQ P + AYFPS S L +MLS +GF+W+
Sbjct: 87 LTHWQSPNYFAYFPSSGSIAGFLGEMLSTGFNVVGFNWM 125
>sp|P17770|DDC_CATRO Aromatic-L-amino-acid decarboxylase OS=Catharanthus roseus GN=TDC
PE=2 SV=1
Length = 500
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
+T+W P F+A+FP+ S + L +MLS A+ +GF+WV
Sbjct: 89 MTNWMSPNFYAFFPATVSSAAFLGEMLSTALNSVGFTWV 127
>sp|O96569|L2AM_DROLE Alpha-methyldopa hypersensitive protein (Fragment) OS=Drosophila
lebanonensis GN=amd PE=3 SV=1
Length = 439
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 29 PRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
P H Y+P+ SYPS++ +ML+ IGFSW+
Sbjct: 3 PHMHGYYPTSVSYPSIVGEMLASGFSIIGFSWI 35
>sp|Q9M0G4|TYDC2_ARATH Probable tyrosine decarboxylase 2 OS=Arabidopsis thaliana
GN=At4g28680 PE=2 SV=1
Length = 545
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 23 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWV 61
+THWQ P + AY+ S S L +ML+ + +GF+W+
Sbjct: 131 ITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWL 169
>sp|P81893|L2AM_DROSI Alpha-methyldopa hypersensitive protein (Fragment) OS=Drosophila
simulans GN=amd PE=2 SV=1
Length = 328
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 39 NSYPSVLADMLSDAIGCIGFSWV 61
SYPS++ +ML+ G IGFSW+
Sbjct: 3 TSYPSIVGEMLASGFGVIGFSWI 25
>sp|B2FJT4|ERPA_STRMK Iron--sulfur cluster insertion protein ErpA OS=Stenotrophomonas
maltophilia (strain K279a) GN=erpA PE=3 SV=1
Length = 130
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 54 GCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDP 87
GC GF + FE E + +DDLA + S V ++ DP
Sbjct: 57 GCSGFQYGFEFDENRAEDDLAVQTS-GVTLLVDP 89
>sp|B4SLD1|ERPA_STRM5 Iron--sulfur cluster insertion protein ErpA OS=Stenotrophomonas
maltophilia (strain R551-3) GN=erpA PE=3 SV=1
Length = 130
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 54 GCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDP 87
GC GF + FE E + +DDLA + S V ++ DP
Sbjct: 57 GCSGFQYGFEFDENRAEDDLAVQTS-GVTLLVDP 89
>sp|P64343|ERPA_XYLFT Iron-sulfur cluster insertion protein ErpA OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=erpA PE=3 SV=1
Length = 128
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 54 GCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDP 87
GC GF + FE E + DDLA + V +V DP
Sbjct: 55 GCSGFQYGFEFDENRADDDLALETDGVVLLV-DP 87
>sp|P64342|ERPA_XYLFA Iron-sulfur cluster insertion protein ErpA OS=Xylella fastidiosa
(strain 9a5c) GN=erpA PE=3 SV=1
Length = 128
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 54 GCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDP 87
GC GF + FE E + DDLA + V +V DP
Sbjct: 55 GCSGFQYGFEFDENRADDDLALETDGVVLLV-DP 87
>sp|B2I891|ERPA_XYLF2 Iron--sulfur cluster insertion protein ErpA OS=Xylella fastidiosa
(strain M23) GN=erpA PE=3 SV=1
Length = 128
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 54 GCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDP 87
GC GF + FE E + DDLA + V +V DP
Sbjct: 55 GCSGFQYGFEFDENRADDDLALETDGVVLLV-DP 87
>sp|Q02401|LPH_RAT Lactase-phlorizin hydrolase OS=Rattus norvegicus GN=Lct PE=2 SV=2
Length = 1928
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 7 VKPSLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYP-SVLADMLSDAIGCIGFSWVFELQ 65
V P I L F S + T + P F A GN P AD+ D++ F+W
Sbjct: 728 VVPWGIRRLLRFASMEYTKGKLPIFLA----GNGMPVGEEADLFDDSVRVNYFNWYINEV 783
Query: 66 ERKRKDDLAYKRSFFVRMVSD 86
+ K+DL RS+ VR + D
Sbjct: 784 LKAVKEDLVDVRSYIVRSLID 804
>sp|Q62774|MYO1A_RAT Unconventional myosin-Ia (Fragment) OS=Rattus norvegicus GN=Myo1a
PE=2 SV=1
Length = 842
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 14 LLFHFLSHQVTHWQHPRFHAYFPSGN 39
LLF LS + QHP H+ FP GN
Sbjct: 518 LLFRDLSQTMWKAQHPLLHSLFPRGN 543
>sp|B9DPU4|Y752_STACT UPF0348 protein Sca_0752 OS=Staphylococcus carnosus (strain TM300)
GN=Sca_0752 PE=3 SV=1
Length = 382
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 13 ILLFHFLSHQVTHWQ-HPRFHAYFPSGNSYPSVLADMLSD------AIGCIGFSWV 61
I F L+ Q+ H + HP F G SYP +++++L + +G S+V
Sbjct: 106 IQAFEELALQINHIEEHPEFQIKLREGKSYPRIISELLGEPPLLQTPNNILGLSYV 161
>sp|Q8LCY2|ISAM2_ARATH Iron-sulfur assembly protein IscA-like 2, mitochondrial
OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2
Length = 158
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 GCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDPKIYN 91
GC GF + FEL R DD ++++ V++V D Y+
Sbjct: 82 GCSGFQYKFELDNRTNPDDRVFEKN-GVKLVVDNVSYD 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,366,459
Number of Sequences: 539616
Number of extensions: 1769275
Number of successful extensions: 6431
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6382
Number of HSP's gapped (non-prelim): 60
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)