Query psy866
Match_columns 132
No_of_seqs 114 out of 702
Neff 5.1
Searched_HMMs 46136
Date Sat Aug 17 00:30:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02590 probable tyrosine dec 99.9 2.4E-25 5.2E-30 196.7 6.9 96 10-114 112-218 (539)
2 PLN02880 tyrosine decarboxylas 99.9 1E-24 2.2E-29 189.9 7.4 98 9-114 63-170 (490)
3 KOG0628|consensus 99.9 7.6E-24 1.6E-28 184.3 5.4 100 9-116 54-165 (511)
4 PF00282 Pyridoxal_deC: Pyrido 99.9 2.3E-22 5E-27 169.7 4.0 99 9-116 20-129 (373)
5 TIGR03799 NOD_PanD_pyr putativ 99.8 3.9E-21 8.4E-26 169.2 6.6 96 9-114 70-183 (522)
6 TIGR03811 tyr_de_CO2_Ent tyros 99.8 5.7E-21 1.2E-25 171.1 7.6 97 8-114 62-164 (608)
7 PLN02263 serine decarboxylase 99.6 1.9E-15 4.1E-20 132.4 5.1 91 9-114 76-176 (470)
8 COG0076 GadB Glutamate decarbo 99.5 5.4E-14 1.2E-18 122.6 6.8 101 6-115 38-144 (460)
9 TIGR01788 Glu-decarb-GAD gluta 99.3 1.2E-12 2.6E-17 113.1 5.7 92 8-112 24-123 (431)
10 cd06450 DOPA_deC_like DOPA dec 99.0 1.7E-10 3.6E-15 93.0 4.5 74 31-113 1-80 (345)
11 PRK02769 histidine decarboxyla 99.0 1.1E-10 2.3E-15 99.3 3.4 78 26-113 19-107 (380)
12 KOG0629|consensus 99.0 2E-10 4.3E-15 100.5 4.9 97 10-116 84-185 (510)
13 PLN03032 serine decarboxylase; 98.7 1.8E-08 3.9E-13 85.9 4.0 90 10-113 10-108 (374)
14 PRK00451 glycine dehydrogenase 96.9 0.0013 2.9E-08 55.8 4.3 93 7-111 48-149 (447)
15 PRK13520 L-tyrosine decarboxyl 96.6 0.0051 1.1E-07 50.1 5.6 91 7-112 3-98 (371)
16 TIGR03812 tyr_de_CO2_Arch tyro 96.3 0.012 2.7E-07 48.0 6.2 92 8-111 2-97 (373)
17 TIGR00461 gcvP glycine dehydro 93.1 0.093 2E-06 50.3 3.6 69 33-112 488-568 (939)
18 COG1104 NifS Cysteine sulfinat 86.0 0.52 1.1E-05 41.2 2.2 36 72-109 45-80 (386)
19 KOG1383|consensus 85.9 3.1 6.8E-05 37.5 7.0 97 6-112 61-160 (491)
20 PRK05367 glycine dehydrogenase 85.5 0.87 1.9E-05 43.8 3.6 91 8-112 480-580 (954)
21 TIGR03301 PhnW-AepZ 2-aminoeth 83.9 1.8 4E-05 34.6 4.3 69 34-111 3-71 (355)
22 cd06451 AGAT_like Alanine-glyo 82.8 1.4 3.1E-05 35.7 3.3 68 34-110 3-70 (356)
23 TIGR03531 selenium_SpcS O-phos 77.8 1.4 3.1E-05 38.8 1.9 41 63-112 105-146 (444)
24 COG2008 GLY1 Threonine aldolas 75.1 2.2 4.7E-05 36.9 2.2 44 75-122 39-82 (342)
25 cd01494 AAT_I Aspartate aminot 71.2 3.2 7E-05 28.9 2.0 38 74-113 3-40 (170)
26 PRK04366 glycine dehydrogenase 68.8 12 0.00026 32.8 5.4 92 7-112 50-151 (481)
27 cd00611 PSAT_like Phosphoserin 63.5 5.8 0.00013 32.9 2.4 73 34-107 3-80 (355)
28 PLN02409 serine--glyoxylate am 61.0 12 0.00026 31.6 3.9 69 32-109 11-79 (401)
29 TIGR02326 transamin_PhnW 2-ami 58.1 12 0.00025 30.7 3.2 67 34-109 7-73 (363)
30 COG4289 Uncharacterized protei 58.0 26 0.00057 31.2 5.4 46 17-62 96-141 (458)
31 PRK12462 phosphoserine aminotr 57.7 18 0.00039 31.2 4.4 74 30-105 4-83 (364)
32 KOG1549|consensus 55.8 29 0.00063 31.0 5.5 74 24-108 39-120 (428)
33 PF10022 DUF2264: Uncharacteri 55.7 42 0.00091 29.0 6.3 69 10-87 77-148 (361)
34 cd00609 AAT_like Aspartate ami 49.6 30 0.00066 27.1 4.2 42 63-112 40-81 (350)
35 PF01212 Beta_elim_lyase: Beta 48.9 4.9 0.00011 33.3 -0.4 33 76-112 34-66 (290)
36 PF07977 FabA: FabA-like domai 43.4 47 0.001 23.8 4.1 41 24-87 33-73 (138)
37 PRK02936 argD acetylornithine 42.5 17 0.00037 29.9 1.9 35 75-113 75-109 (377)
38 PRK02948 cysteine desulfurase; 40.2 35 0.00075 28.1 3.3 35 75-111 47-81 (381)
39 PLN02452 phosphoserine transam 40.0 1.1E+02 0.0024 26.0 6.5 76 29-106 6-87 (365)
40 TIGR03235 DNA_S_dndA cysteine 39.4 49 0.0011 26.8 4.1 34 75-110 46-79 (353)
41 cd06502 TA_like Low-specificit 38.9 25 0.00053 28.0 2.2 35 75-113 36-70 (338)
42 cd00378 SHMT Serine-glycine hy 38.1 47 0.001 27.4 3.9 69 31-110 21-101 (402)
43 KOG1368|consensus 37.6 43 0.00093 29.3 3.6 30 79-112 64-93 (384)
44 TIGR03402 FeS_nifS cysteine de 37.2 42 0.00091 27.5 3.4 34 75-110 46-79 (379)
45 PF11752 DUF3309: Protein of u 35.5 39 0.00085 21.5 2.3 22 19-40 12-33 (49)
46 KOG1404|consensus 35.1 13 0.00027 33.3 -0.0 31 86-116 105-135 (442)
47 PRK13034 serine hydroxymethylt 35.0 1E+02 0.0022 26.4 5.5 37 63-110 74-110 (416)
48 PLN02651 cysteine desulfurase 34.8 51 0.0011 27.0 3.6 34 75-110 47-80 (364)
49 COG1932 SerC Phosphoserine ami 34.0 38 0.00083 29.7 2.7 41 71-112 50-94 (365)
50 cd06453 SufS_like Cysteine des 33.8 85 0.0018 25.5 4.7 35 75-110 47-81 (373)
51 PRK13479 2-aminoethylphosphona 33.5 46 0.00099 27.1 3.1 68 34-110 9-76 (368)
52 TIGR03246 arg_catab_astC succi 33.2 28 0.00061 29.3 1.8 31 79-113 85-115 (397)
53 PRK13360 omega amino acid--pyr 32.8 34 0.00074 29.7 2.3 37 75-113 93-129 (442)
54 PRK07046 aminotransferase; Val 31.5 43 0.00093 29.3 2.7 38 75-116 119-156 (453)
55 PRK07481 hypothetical protein; 31.4 32 0.00069 29.9 1.9 38 75-113 90-127 (449)
56 PRK06108 aspartate aminotransf 31.3 43 0.00093 27.3 2.5 40 63-110 65-104 (382)
57 PRK08117 4-aminobutyrate amino 31.3 31 0.00067 29.5 1.8 38 75-114 90-127 (433)
58 PRK03715 argD acetylornithine 30.8 30 0.00065 29.5 1.6 34 75-112 82-115 (395)
59 PRK07179 hypothetical protein; 30.8 65 0.0014 26.9 3.6 33 76-112 104-136 (407)
60 PRK07777 aminotransferase; Val 29.8 86 0.0019 25.9 4.1 38 63-108 65-103 (387)
61 PRK06107 aspartate aminotransf 29.8 59 0.0013 27.2 3.2 55 45-107 51-110 (402)
62 COG0764 FabA 3-hydroxymyristoy 29.4 29 0.00063 26.3 1.1 23 24-46 41-63 (147)
63 TIGR01750 fabZ beta-hydroxyacy 29.0 37 0.00079 24.2 1.6 28 23-50 35-63 (140)
64 PRK05964 adenosylmethionine--8 28.7 43 0.00094 28.5 2.2 37 75-113 89-125 (423)
65 PRK08361 aspartate aminotransf 28.4 54 0.0012 27.2 2.7 58 43-108 49-111 (391)
66 PRK08360 4-aminobutyrate amino 28.4 39 0.00084 29.4 1.9 40 75-116 88-127 (443)
67 cd00613 GDC-P Glycine cleavage 28.2 1.5E+02 0.0032 24.3 5.2 29 75-105 68-97 (398)
68 PLN00145 tyrosine/nicotianamin 28.2 44 0.00095 28.6 2.2 74 28-109 61-136 (430)
69 PRK07683 aminotransferase A; V 27.6 60 0.0013 27.0 2.8 59 43-109 44-108 (387)
70 PRK12403 putative aminotransfe 26.7 42 0.00091 29.3 1.8 37 75-113 102-138 (460)
71 PF02594 DUF167: Uncharacteris 26.5 54 0.0012 22.2 2.0 29 73-103 42-70 (77)
72 PF13700 DUF4158: Domain of un 25.9 1.3E+02 0.0029 22.3 4.2 55 30-87 55-110 (166)
73 PRK02627 acetylornithine amino 25.8 35 0.00076 28.1 1.1 36 75-114 85-120 (396)
74 TIGR00707 argD acetylornithine 25.7 70 0.0015 26.1 2.9 33 75-111 73-105 (379)
75 PRK07483 hypothetical protein; 25.4 54 0.0012 28.5 2.2 37 75-113 77-113 (443)
76 cd00610 OAT_like Acetyl ornith 25.3 53 0.0012 27.0 2.1 36 75-112 83-118 (413)
77 TIGR01437 selA_rel uncharacter 25.1 88 0.0019 26.1 3.4 58 39-110 23-80 (363)
78 cd01287 FabA FabA, beta-hydrox 24.9 1.1E+02 0.0023 23.0 3.5 24 23-46 34-57 (150)
79 TIGR01885 Orn_aminotrans ornit 24.8 28 0.00061 29.1 0.4 35 75-113 83-117 (401)
80 PRK00011 glyA serine hydroxyme 24.4 1.4E+02 0.0029 25.0 4.4 37 63-110 71-107 (416)
81 TIGR01977 am_tr_V_EF2568 cyste 24.2 43 0.00094 27.2 1.4 34 75-109 48-81 (376)
82 PRK05093 argD bifunctional N-s 24.1 48 0.001 27.8 1.6 34 76-113 87-120 (403)
83 PRK08912 hypothetical protein; 23.9 1.5E+02 0.0032 24.5 4.5 37 63-107 67-104 (387)
84 PRK07030 adenosylmethionine--8 23.7 61 0.0013 28.4 2.3 37 75-113 94-130 (466)
85 TIGR01364 serC_1 phosphoserine 23.6 53 0.0011 27.5 1.8 37 72-109 38-75 (349)
86 PRK01278 argD acetylornithine 23.3 58 0.0013 27.0 2.0 34 75-112 77-110 (389)
87 COG0436 Aspartate/tyrosine/aro 23.2 1.2E+02 0.0027 25.9 4.0 65 40-112 41-111 (393)
88 PRK06207 aspartate aminotransf 23.0 1.5E+02 0.0032 25.0 4.4 38 63-108 82-120 (405)
89 PRK08636 aspartate aminotransf 22.4 1.4E+02 0.003 25.0 4.1 36 63-106 75-111 (403)
90 PTZ00433 tyrosine aminotransfe 22.4 1.4E+02 0.0029 25.2 4.1 77 26-110 30-124 (412)
91 PRK06918 4-aminobutyrate amino 22.1 65 0.0014 27.8 2.1 39 75-115 101-140 (451)
92 PRK05764 aspartate aminotransf 21.9 1E+02 0.0022 25.4 3.1 58 44-109 48-110 (393)
93 PRK06916 adenosylmethionine--8 21.9 72 0.0016 27.9 2.3 37 75-113 103-139 (460)
94 PRK03244 argD acetylornithine 21.2 42 0.0009 27.9 0.7 38 75-113 89-126 (398)
95 cd06460 M32_Taq Peptidase fami 21.0 1.8E+02 0.0038 25.6 4.5 55 24-84 307-361 (396)
96 PRK06777 4-aminobutyrate amino 20.9 82 0.0018 27.0 2.4 41 75-116 87-127 (421)
97 PLN02721 threonine aldolase 20.8 97 0.0021 24.8 2.7 30 79-112 48-77 (353)
98 TIGR03251 LAT_fam L-lysine 6-t 20.6 50 0.0011 28.4 1.1 37 76-113 90-126 (431)
99 PRK08593 4-aminobutyrate amino 20.5 72 0.0016 27.7 2.0 40 75-116 89-129 (445)
100 PRK06173 adenosylmethionine--8 20.5 90 0.0019 27.1 2.6 36 76-113 92-127 (429)
101 PLN02760 4-aminobutyrate:pyruv 20.4 73 0.0016 28.4 2.1 37 75-112 137-173 (504)
102 PRK06917 hypothetical protein; 20.3 73 0.0016 27.7 2.1 36 75-112 78-113 (447)
103 PRK11715 inner membrane protei 20.3 47 0.001 29.6 0.9 32 23-54 232-266 (436)
104 PRK07480 putative aminotransfe 20.0 83 0.0018 27.5 2.3 37 75-113 98-134 (456)
No 1
>PLN02590 probable tyrosine decarboxylase
Probab=99.92 E-value=2.4e-25 Score=196.70 Aligned_cols=96 Identities=21% Similarity=0.414 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHH-----HHHhhhcccchHHHHHHHHHHh
Q psy866 10 SLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF-----ELQERKRKDDLAYKRSFFVRMV 84 (132)
Q Consensus 10 ~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~-----elE~~~~~~~~~~vi~Wl~~~l 84 (132)
++++++.+.|+|+.+||+|||||||||+++++++++||+|++++|+++++|.+ +||+ ++++||++++
T Consensus 112 ~il~~~~~~i~p~~~~~~hP~f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~--------~vi~wl~~l~ 183 (539)
T PLN02590 112 ELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEI--------IVLDWLAKLL 183 (539)
T ss_pred HHHHHHHHHHhccCCcCCCCCeeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHH--------HHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999988 9999 9999999999
Q ss_pred CCCCC------CCCCcccCCCCCcchhhhhcccccc
Q psy866 85 SDPKI------YNPKIAVATPTSRRPTCLASSAEED 114 (132)
Q Consensus 85 GlP~~------~~G~i~tsGgs~anl~aL~~AR~~~ 114 (132)
|+|+. .+| +||+|||+||++||++||+..
T Consensus 184 glp~~~~~~~~~gG-~~~sGgSeAnl~al~aAR~~~ 218 (539)
T PLN02590 184 QLPDHFLSTGNGGG-VIQGTGCEAVLVVVLAARDRI 218 (539)
T ss_pred CCCcccccCCCCce-EEcCchHHHHHHHHHHHHHHH
Confidence 99986 445 899999999999999999954
No 2
>PLN02880 tyrosine decarboxylase
Probab=99.91 E-value=1e-24 Score=189.91 Aligned_cols=98 Identities=24% Similarity=0.484 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHH-----HHHhhhcccchHHHHHHHHHH
Q psy866 9 PSLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF-----ELQERKRKDDLAYKRSFFVRM 83 (132)
Q Consensus 9 ~~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~-----elE~~~~~~~~~~vi~Wl~~~ 83 (132)
+++++++.+.|+|+.+||+|||||||+|+++++++++||+|++++|+++++|.. +||+ ++++||+++
T Consensus 63 ~~~l~~~~~~i~~~~~~~~hP~f~~~~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~--------~vi~wl~~l 134 (490)
T PLN02880 63 DQVLDDVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEM--------IVLDWLAKL 134 (490)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeeEeccCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHH--------HHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999987 9999 999999999
Q ss_pred hCCCCCC-----CCCcccCCCCCcchhhhhcccccc
Q psy866 84 VSDPKIY-----NPKIAVATPTSRRPTCLASSAEED 114 (132)
Q Consensus 84 lGlP~~~-----~G~i~tsGgs~anl~aL~~AR~~~ 114 (132)
+|+|+.+ +|+++|+|||++|++||.+||+..
T Consensus 135 ~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~ 170 (490)
T PLN02880 135 LNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRV 170 (490)
T ss_pred hCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHH
Confidence 9999874 344899999999999999999864
No 3
>KOG0628|consensus
Probab=99.89 E-value=7.6e-24 Score=184.30 Aligned_cols=100 Identities=39% Similarity=0.711 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHH-----HHHhhhcccchHHHHHHHHHH
Q psy866 9 PSLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF-----ELQERKRKDDLAYKRSFFVRM 83 (132)
Q Consensus 9 ~~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~-----elE~~~~~~~~~~vi~Wl~~~ 83 (132)
++++.++.+.|+||.+|||||+||||||++.|+++++||||++++++.+|+|.+ |||. .++|||++|
T Consensus 54 ~~Il~D~ekiI~PGitHw~hP~fhAyfpa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~--------ivmDWL~km 125 (511)
T KOG0628|consen 54 EDILGDLEKIIMPGITHWQHPHFHAYFPAGNSYPSILADMLSGGIGCVGFTWASSPACTELEV--------IVMDWLGKM 125 (511)
T ss_pred HHHHHHHHHHccCCCcccCCCceeeEccCccchHHHHHHHHhcccccccceeecCcchHHHHH--------HHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999 9999 999999999
Q ss_pred hCCCCCCC-------CCcccCCCCCcchhhhhcccccccc
Q psy866 84 VSDPKIYN-------PKIAVATPTSRRPTCLASSAEEDEE 116 (132)
Q Consensus 84 lGlP~~~~-------G~i~tsGgs~anl~aL~~AR~~~~~ 116 (132)
+++|+++. |+++-..+|.+++.++++||..+-.
T Consensus 126 l~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~ 165 (511)
T KOG0628|consen 126 LGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIE 165 (511)
T ss_pred hcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHH
Confidence 99996542 4477788999999999999997644
No 4
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.85 E-value=2.3e-22 Score=169.74 Aligned_cols=99 Identities=27% Similarity=0.464 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHH-----HHHhhhcccchHHHHHHHHHH
Q psy866 9 PSLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF-----ELQERKRKDDLAYKRSFFVRM 83 (132)
Q Consensus 9 ~~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~-----elE~~~~~~~~~~vi~Wl~~~ 83 (132)
+++++++.+.|.|+..+|+||+||||+++++++++++||+|++++|+++..|.. +||+ ++++||+++
T Consensus 20 ~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E~--------~vi~~l~~l 91 (373)
T PF00282_consen 20 EEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEIER--------EVIRWLADL 91 (373)
T ss_dssp HHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccccccchH--------HHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999988 9999 999999999
Q ss_pred hCCCCC------CCCCcccCCCCCcchhhhhcccccccc
Q psy866 84 VSDPKI------YNPKIAVATPTSRRPTCLASSAEEDEE 116 (132)
Q Consensus 84 lGlP~~------~~G~i~tsGgs~anl~aL~~AR~~~~~ 116 (132)
+|+|+. ++| +||+|||++|++|+.+||+...+
T Consensus 92 ~g~~~~~~~~~~~~G-~~t~Ggt~anl~al~aAR~~~~~ 129 (373)
T PF00282_consen 92 FGLPESFTFSKDAGG-VFTSGGTEANLYALLAARERALP 129 (373)
T ss_dssp TTGSGGTTSTTTSEE-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred hCCcccccccCCCce-eEeccchHHHHHHHHHHHHHHhh
Confidence 999943 345 89999999999999999987643
No 5
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.83 E-value=3.9e-21 Score=169.18 Aligned_cols=96 Identities=15% Similarity=0.022 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHcccCCCCCCCCceeeCCCC-CCHHHHHHHHHHHHhcCccchHHH-----HHHhhhcccchHHHHHHHHH
Q psy866 9 PSLIILLFHFLSHQVTHWQHPRFHAYFPSG-NSYPSVLADMLSDAIGCIGFSWVF-----ELQERKRKDDLAYKRSFFVR 82 (132)
Q Consensus 9 ~~~l~~l~~~ilp~~~~~~hPrf~a~~ps~-~s~~s~lgD~L~saln~~~~sw~~-----elE~~~~~~~~~~vi~Wl~~ 82 (132)
+++++++.+.|+|+.+||+|||||||++++ +++.+.++| |++++|+++++|+. +||+ ++++||++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~hP~f~g~~~~~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~--------~v~~wl~~ 140 (522)
T TIGR03799 70 SEHTQFLLDKLVAHSVHTASPSFIGHMTSALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLER--------QVLGMMHH 140 (522)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCeEEeccCCCchHHHHHHH-HHHHhcCCcceeecCcchHHHHH--------HHHHHHHH
Confidence 478999999999999999999999999997 555556888 67899999999999 9999 99999999
Q ss_pred HhC------------CCCCCCCCcccCCCCCcchhhhhcccccc
Q psy866 83 MVS------------DPKIYNPKIAVATPTSRRPTCLASSAEED 114 (132)
Q Consensus 83 ~lG------------lP~~~~G~i~tsGgs~anl~aL~~AR~~~ 114 (132)
|++ +|+.++| +||+|||+||++||.+||+..
T Consensus 141 l~~~~~~~~~~~~~~~~~~~~G-~~tsGGS~ANl~Al~~AR~~~ 183 (522)
T TIGR03799 141 LVYGQDDDFYRKWMHSADHSLG-AFCSGGTVANITALWVARNRL 183 (522)
T ss_pred HhccCcccchhhcccCCCCCCe-EEcCchHHHHHHHHHHHHHHh
Confidence 995 4455556 899999999999999999964
No 6
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.83 E-value=5.7e-21 Score=171.07 Aligned_cols=97 Identities=13% Similarity=0.068 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHcccCCCCCCC-CceeeCCCCCCHHHHHHHHHHHHhcCccchHHH-----HHHhhhcccchHHHHHHHH
Q psy866 8 KPSLIILLFHFLSHQVTHWQHP-RFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF-----ELQERKRKDDLAYKRSFFV 81 (132)
Q Consensus 8 ~~~~l~~l~~~ilp~~~~~~hP-rf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~-----elE~~~~~~~~~~vi~Wl~ 81 (132)
-.++++++.+.+.++.++|+|| ||+||++++++++|++||+++.++|++..+|+. +||+ ++++||+
T Consensus 62 ~~~~l~~l~~~l~~~sv~~~~P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~--------~vi~~la 133 (608)
T TIGR03811 62 MKDVLDELSSRLRTESVPWHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEE--------EVGKEFA 133 (608)
T ss_pred HHHHHHHHHHHHhcCCCCCCCccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHH--------HHHHHHH
Confidence 3579999999999999999999 999999999999999999999999999999988 9999 9999999
Q ss_pred HHhCCCCCCCCCcccCCCCCcchhhhhcccccc
Q psy866 82 RMVSDPKIYNPKIAVATPTSRRPTCLASSAEED 114 (132)
Q Consensus 82 ~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~~ 114 (132)
+|+|||+. .| .||||||+||++||.+||+.+
T Consensus 134 ~l~G~~~~-~G-~~TsGGT~ANl~aL~~AR~~k 164 (608)
T TIGR03811 134 TLMGYKNG-WG-HIVADGSLANLEGLWYARNIK 164 (608)
T ss_pred HHhCCCCC-Ce-EEeCChHHHHHHHHHHHHHhh
Confidence 99999985 36 799999999999999999964
No 7
>PLN02263 serine decarboxylase
Probab=99.57 E-value=1.9e-15 Score=132.37 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcccCCCCCCCCceeeCCCCCCH-HHHHHHHHHHHhcCccchHHH--------HHHhhhcccchHHHHHH
Q psy866 9 PSLIILLFHFLSHQVTHWQHPRFHAYFPSGNSY-PSVLADMLSDAIGCIGFSWVF--------ELQERKRKDDLAYKRSF 79 (132)
Q Consensus 9 ~~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~-~s~lgD~L~saln~~~~sw~~--------elE~~~~~~~~~~vi~W 79 (132)
.++|+++.+.++|+.+| |||| |.+.++ .+.++|+|...+|+.++.|.. ++|+ ++++|
T Consensus 76 ~~~l~~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~--------~Vi~w 141 (470)
T PLN02263 76 ASVLARYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEV--------GVLDW 141 (470)
T ss_pred HHHHHHHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCCcchhHHHHHH--------HHHHH
Confidence 57899999999998887 9999 999999 899999999999999988876 8999 99999
Q ss_pred HHHHhCCCC-CCCCCcccCCCCCcchhhhhcccccc
Q psy866 80 FVRMVSDPK-IYNPKIAVATPTSRRPTCLASSAEED 114 (132)
Q Consensus 80 l~~~lGlP~-~~~G~i~tsGgs~anl~aL~~AR~~~ 114 (132)
+++++|+|+ .+.| .+|+|||++|++||.+||+..
T Consensus 142 la~L~g~p~~~~~G-~vtsGGTEaNL~Al~aARe~~ 176 (470)
T PLN02263 142 FARLWEIEKNEYWG-YITNCGTEGNLHGILVGREVF 176 (470)
T ss_pred HHHHhCCCCCCCeE-EEeCcHHHHHHHHHHHHHhhc
Confidence 999999987 5667 899999999999999999953
No 8
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.48 E-value=5.4e-14 Score=122.64 Aligned_cols=101 Identities=16% Similarity=0.042 Sum_probs=93.9
Q ss_pred ccchHHHHHHHHH-HcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHH-----HHHhhhcccchHHHHHH
Q psy866 6 LVKPSLIILLFHF-LSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF-----ELQERKRKDDLAYKRSF 79 (132)
Q Consensus 6 ~~~~~~l~~l~~~-ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~-----elE~~~~~~~~~~vi~W 79 (132)
..+++++.+|... +.+...++.||++++|.++...++.++++.++..+|+|..+|.. ++|+ ++++|
T Consensus 38 ~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~--------~~v~~ 109 (460)
T COG0076 38 EPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEE--------RVVNM 109 (460)
T ss_pred CchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHHHHHHhhcCCCcccChhHHHHHH--------HHHHH
Confidence 3456888888886 78888888899999999999999999999999999999999988 9999 99999
Q ss_pred HHHHhCCCCCCCCCcccCCCCCcchhhhhccccccc
Q psy866 80 FVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEEDE 115 (132)
Q Consensus 80 l~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~~~ 115 (132)
+.+|+++|+.+.| .||+|||+||+.|+.+||+...
T Consensus 110 l~~l~~~~~~~~G-~~t~GgTean~lal~aar~~~~ 144 (460)
T COG0076 110 LSDLLGAPEEASG-TFTSGGTEANLLALLAARERWR 144 (460)
T ss_pred HHHHhCCCCCCce-EEEcChHHHHHHHHHHHHHHHH
Confidence 9999999999989 8999999999999999999775
No 9
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.34 E-value=1.2e-12 Score=113.06 Aligned_cols=92 Identities=7% Similarity=-0.068 Sum_probs=79.3
Q ss_pred chHHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHH-----HHHhhhcccchHHHHHHHHH
Q psy866 8 KPSLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF-----ELQERKRKDDLAYKRSFFVR 82 (132)
Q Consensus 8 ~~~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~-----elE~~~~~~~~~~vi~Wl~~ 82 (132)
-++++++|...+. ..+..||+|++|+.++..+. +.|++..++|++.++|.. ++|+ ++++|+++
T Consensus 24 ~~~~~~~~~~~iy--ld~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~~~~le~--------~~~~~la~ 91 (431)
T TIGR01788 24 PDAAYQLIHDELS--LDGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQTAEIEN--------RCVNMLAD 91 (431)
T ss_pred HHHHHHHHHHHhh--hcCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCccHHHHHH--------HHHHHHHH
Confidence 3488888888764 47788999999999988877 699999999988888877 8999 99999999
Q ss_pred HhCCC---CCCCCCcccCCCCCcchhhhhcccc
Q psy866 83 MVSDP---KIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 83 ~lGlP---~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
++|+| +...| ++|||||+||.+|+.++|+
T Consensus 92 llg~~~~~~~~~g-~~TsGgTEAn~~al~~ar~ 123 (431)
T TIGR01788 92 LWHAPAKDAEAVG-TSTIGSSEAIMLGGLAMKW 123 (431)
T ss_pred HhCCCCCCCCCeE-EEechHHHHHHHHHHHHHH
Confidence 99998 35555 6799999999999999985
No 10
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.05 E-value=1.7e-10 Score=93.04 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=66.9
Q ss_pred ceeeCCCCCCHHHHHHHHHHHHhcCccchHHH-----HHHhhhcccchHHHHHHHHHHhCCC-CCCCCCcccCCCCCcch
Q psy866 31 FHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF-----ELQERKRKDDLAYKRSFFVRMVSDP-KIYNPKIAVATPTSRRP 104 (132)
Q Consensus 31 f~a~~ps~~s~~s~lgD~L~saln~~~~sw~~-----elE~~~~~~~~~~vi~Wl~~~lGlP-~~~~G~i~tsGgs~anl 104 (132)
|||++++++.++++++|+++.++|++...|.. ++|+ .+++|+++++|++ +...+ +||+|||++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~--------~~~~~~~~~~g~~~~~~~~-~~t~ggt~a~~ 71 (345)
T cd06450 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEA--------EVVNWLAKLFGLPSEDADG-VFTSGGSESNL 71 (345)
T ss_pred CcccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHH--------HHHHHHHHHhCCCCCCCCE-EEeCChhHHHH
Confidence 89999999999999999999999999887776 8999 9999999999998 44456 89999999999
Q ss_pred hhhhccccc
Q psy866 105 TCLASSAEE 113 (132)
Q Consensus 105 ~aL~~AR~~ 113 (132)
.++.++|+.
T Consensus 72 ~al~~~~~~ 80 (345)
T cd06450 72 LALLAARDR 80 (345)
T ss_pred HHHHHHHHH
Confidence 999998763
No 11
>PRK02769 histidine decarboxylase; Provisional
Probab=99.05 E-value=1.1e-10 Score=99.31 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=66.5
Q ss_pred CCCCCceeeCCCCCCH-HHHHHHHHHHHhcCccchHHH---------HHHhhhcccchHHHHHHHHHHhCCCCC-CCCCc
Q psy866 26 WQHPRFHAYFPSGNSY-PSVLADMLSDAIGCIGFSWVF---------ELQERKRKDDLAYKRSFFVRMVSDPKI-YNPKI 94 (132)
Q Consensus 26 ~~hPrf~a~~ps~~s~-~s~lgD~L~saln~~~~sw~~---------elE~~~~~~~~~~vi~Wl~~~lGlP~~-~~G~i 94 (132)
-+||+||++||...++ .+.+.+++....|+.+ .|.. ++|+ ++++|+++++|.|+. ..| .
T Consensus 19 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~g-np~~~~~~g~~~~~~e~--------~~~~~~a~l~g~~~~~~~G-~ 88 (380)
T PRK02769 19 RHNQYFNVGYPEAADFDYSALKRFFSFSINNCG-DPYSKSNYPLNSFDFER--------DVMNFFAELFKIPFNESWG-Y 88 (380)
T ss_pred HHhhhcccCCCchhhcCHHHHHHHHHhhhccCC-CccccCCCCCChHHHHH--------HHHHHHHHHhCCCCCCCCE-E
Confidence 3699999999999988 6999999999998754 3333 7999 999999999999854 335 8
Q ss_pred ccCCCCCcchhhhhccccc
Q psy866 95 AVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 95 ~tsGgs~anl~aL~~AR~~ 113 (132)
||+|||++|+.|+.+||+.
T Consensus 89 ~TsGgTean~~a~~~ar~~ 107 (380)
T PRK02769 89 ITNGGTEGNLYGCYLAREL 107 (380)
T ss_pred EecChHHHHHHHHHHHHHh
Confidence 9999999999999999874
No 12
>KOG0629|consensus
Probab=99.04 E-value=2e-10 Score=100.50 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=88.3
Q ss_pred HHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHH-----HHHhhhcccchHHHHHHHHHHh
Q psy866 10 SLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF-----ELQERKRKDDLAYKRSFFVRMV 84 (132)
Q Consensus 10 ~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~-----elE~~~~~~~~~~vi~Wl~~~l 84 (132)
+++.+.. ..+.+.+.+.|||||..+.++-.+.+..|++|+++.|.++++|+- .+|. +|+.-+.+.+
T Consensus 84 qil~~cr-~tl~y~vKTgHprffNQl~~glD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~--------~vl~km~~iv 154 (510)
T KOG0629|consen 84 QILEDCR-DTLKYSVKTGHPRFFNQLSSGLDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEE--------EVLAKMREIV 154 (510)
T ss_pred HHHHHHH-HHHHhhhccCCCcchhhhccCCCHHHHHHHHHHhccCCCCceEEecceEEeehH--------HHHHHHHHHh
Confidence 4444444 467899999999999999999999999999999999999999998 8999 9999999999
Q ss_pred CCCCCCCCCcccCCCCCcchhhhhcccccccc
Q psy866 85 SDPKIYNPKIAVATPTSRRPTCLASSAEEDEE 116 (132)
Q Consensus 85 GlP~~~~G~i~tsGgs~anl~aL~~AR~~~~~ 116 (132)
|++....| +|..||+.+|+-++.+||....|
T Consensus 155 Gw~~~~Dg-If~pggsisn~Ya~~~Aryk~~P 185 (510)
T KOG0629|consen 155 GWEEGGDG-IFAPGGSISNMYAMNCARYKNFP 185 (510)
T ss_pred CCCCCCCc-eecCCchhHHHHHHHHHHhhcCc
Confidence 99988667 99999999999999999998776
No 13
>PLN03032 serine decarboxylase; Provisional
Probab=98.66 E-value=1.8e-08 Score=85.95 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHH--------HHHhhhcccchHHHHHHHH
Q psy866 10 SLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF--------ELQERKRKDDLAYKRSFFV 81 (132)
Q Consensus 10 ~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~--------elE~~~~~~~~~~vi~Wl~ 81 (132)
++|+.+.+.+ .-++.+|.||...-.--.+.+.+|+....|+.+.-|.. ++|+ ++++|++
T Consensus 10 ~~~~~~~~~~-----~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~--------~v~~~ia 76 (374)
T PLN03032 10 DILASYDKLL-----AEKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEV--------GVLDWFA 76 (374)
T ss_pred HHHHHHHHHH-----HHhhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHH--------HHHHHHH
Confidence 5556665554 33678999997777666678999988887765543333 8999 9999999
Q ss_pred HHhCCCCC-CCCCcccCCCCCcchhhhhccccc
Q psy866 82 RMVSDPKI-YNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 82 ~~lGlP~~-~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
+++|+|+. +.| +||||||+||++|+.+||+.
T Consensus 77 ~llg~~~~~~~G-~fTsGGTEaNl~al~~ar~~ 108 (374)
T PLN03032 77 RLWELEKDEYWG-YITTCGTEGNLHGILVGREV 108 (374)
T ss_pred HHhCCCCccCCE-EEeCchHHHHHHHHHHHHHh
Confidence 99999854 456 89999999999999999964
No 14
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=96.85 E-value=0.0013 Score=55.80 Aligned_cols=93 Identities=10% Similarity=-0.002 Sum_probs=60.7
Q ss_pred cchHHHHHHHHHHcccCCCCCCCCcee------eCCCCCCHHHHHHHHHHHHhcCccchHHH---HHHhhhcccchHHHH
Q psy866 7 VKPSLIILLFHFLSHQVTHWQHPRFHA------YFPSGNSYPSVLADMLSDAIGCIGFSWVF---ELQERKRKDDLAYKR 77 (132)
Q Consensus 7 ~~~~~l~~l~~~ilp~~~~~~hPrf~a------~~ps~~s~~s~lgD~L~saln~~~~sw~~---elE~~~~~~~~~~vi 77 (132)
..+++++++.+..-.+.....|++|+| +.|.........+|++.. +|++...+.. +.+. ...
T Consensus 48 ~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~~~~~g~~~~~~--------e~~ 118 (447)
T PRK00451 48 SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQPEISQGTLQAIF--------EYQ 118 (447)
T ss_pred CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCCccchHHHHHHH--------HHH
Confidence 456888998887766666667999999 444433334444566666 7774433333 4444 667
Q ss_pred HHHHHHhCCCCCCCCCcccCCCCCcchhhhhccc
Q psy866 78 SFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSA 111 (132)
Q Consensus 78 ~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR 111 (132)
.|+++++|.+.. .+ ++|+||+. ++.++..|+
T Consensus 119 ~~la~l~g~~~~-~v-~~~~g~t~-~~~~~~~a~ 149 (447)
T PRK00451 119 TMICELTGMDVA-NA-SMYDGATA-LAEAALMAV 149 (447)
T ss_pred HHHHHHhCCCcc-eE-EecCcHHH-HHHHHHHHH
Confidence 899999999865 44 68888886 444444444
No 15
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=96.56 E-value=0.0051 Score=50.06 Aligned_cols=91 Identities=8% Similarity=-0.005 Sum_probs=59.8
Q ss_pred cchHHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCcc---chHHH--HHHhhhcccchHHHHHHHH
Q psy866 7 VKPSLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIG---FSWVF--ELQERKRKDDLAYKRSFFV 81 (132)
Q Consensus 7 ~~~~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~---~sw~~--elE~~~~~~~~~~vi~Wl~ 81 (132)
...++|+.|.+.--+.. ... |||++.-..+.+..+ |.+...++.+. ..+.. ++++ ++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~la 69 (371)
T PRK13520 3 SEEEILEELEEYRSEDL-KYE--RILSSMCTEPHPIAR--KAHEMFLETNLGDPGLFPGTAKLEE--------EAVEMLG 69 (371)
T ss_pred CHHHHHHHHHHHHhcCC-CHH--HeeeeeecCchHHHH--HHHHHHHhcCCCCcccCccHHHHHH--------HHHHHHH
Confidence 34578888877654432 222 688886666555422 44444443221 11212 6667 8999999
Q ss_pred HHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 82 RMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 82 ~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
+++|.|+. .+ ++++||+++|..++.++|.
T Consensus 70 ~~~g~~~~-~~-~~~~ggt~a~~~a~~~~~~ 98 (371)
T PRK13520 70 ELLHLPDA-YG-YITSGGTEANIQAVRAARN 98 (371)
T ss_pred HHhCCCCC-Ce-EEecCcHHHHHHHHHHHHh
Confidence 99999865 35 7899999999999877765
No 16
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=96.27 E-value=0.012 Score=47.99 Aligned_cols=92 Identities=10% Similarity=0.043 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHH--HHHHHHHhcCccchHHH--HHHhhhcccchHHHHHHHHHH
Q psy866 8 KPSLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVL--ADMLSDAIGCIGFSWVF--ELQERKRKDDLAYKRSFFVRM 83 (132)
Q Consensus 8 ~~~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~l--gD~L~saln~~~~sw~~--elE~~~~~~~~~~vi~Wl~~~ 83 (132)
..++++.|.+ +..+.+..++||++..+...+.+...- .+.+....+.. ..|.. ++++ ++.++++++
T Consensus 2 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~la~~ 71 (373)
T TIGR03812 2 EEEVLEELKE-YRSEDLKYSDGRILGSMCTNPHPIAVKAYDMFIETNLGDP-GLFPGTKKIEE--------EVVGSLGNL 71 (373)
T ss_pred HHHHHHHHHH-HHhcCCCCCCCcEEEEEeCCchHHHHHHHHHHhhcCCCCc-ccCccHHHHHH--------HHHHHHHHH
Confidence 4578889888 567888889999988888877766432 22222111111 11222 6777 899999999
Q ss_pred hCCCCCCCCCcccCCCCCcchhhhhccc
Q psy866 84 VSDPKIYNPKIAVATPTSRRPTCLASSA 111 (132)
Q Consensus 84 lGlP~~~~G~i~tsGgs~anl~aL~~AR 111 (132)
+|.++.. . ++++|++++|..++.+.+
T Consensus 72 ~g~~~~~-~-~~~~g~~~~~~~~~~~~~ 97 (373)
T TIGR03812 72 LHLPDAY-G-YIVSGGTEANIQAVRAAK 97 (373)
T ss_pred hCCCCCC-e-EEeccHHHHHHHHHHHHH
Confidence 9997643 4 688999999988876654
No 17
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=93.09 E-value=0.093 Score=50.33 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=52.6
Q ss_pred eeCCCC--CCHHHHHHHHHHHHhcCccchHH-------H---HHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCC
Q psy866 33 AYFPSG--NSYPSVLADMLSDAIGCIGFSWV-------F---ELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPT 100 (132)
Q Consensus 33 a~~ps~--~s~~s~lgD~L~saln~~~~sw~-------~---elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs 100 (132)
+|+|.+ ..+...++|++..+++.....+- + +++. +..+||+++.|+|. .+ ....+|+
T Consensus 488 ~fi~lGsctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~--------elq~~l~eltGmd~--~S-l~p~aGA 556 (939)
T TIGR00461 488 SMIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIA--------QLEKWLCSITGFDA--IS-LQPNSGA 556 (939)
T ss_pred cCCCCccCCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHH--------HHHHHHHHHHCCCC--cc-cCCchHH
Confidence 666665 44556788999888775543111 1 6777 89999999999993 33 7889999
Q ss_pred Ccchhhhhcccc
Q psy866 101 SRRPTCLASSAE 112 (132)
Q Consensus 101 ~anl~aL~~AR~ 112 (132)
++++++|.++|.
T Consensus 557 ~gE~agL~aiR~ 568 (939)
T TIGR00461 557 QGEYAGLRVIRS 568 (939)
T ss_pred HHHHHHHHHHHH
Confidence 999999999997
No 18
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=86.04 E-value=0.52 Score=41.22 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhc
Q psy866 72 DLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLAS 109 (132)
Q Consensus 72 ~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~ 109 (132)
.++.+++.+++++|..+ .. -+||||||++|-.++..
T Consensus 45 ~ve~AR~~iA~llga~~-~e-IiFTSG~TEsnNlaI~g 80 (386)
T COG1104 45 AVEEAREQIAKLLGADP-EE-IIFTSGATESNNLAIKG 80 (386)
T ss_pred HHHHHHHHHHHHhCCCC-Ce-EEEecCCcHHHHHHHHh
Confidence 44469999999999987 34 49999999999998876
No 19
>KOG1383|consensus
Probab=85.87 E-value=3.1 Score=37.52 Aligned_cols=97 Identities=7% Similarity=-0.022 Sum_probs=60.3
Q ss_pred ccchHHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccc-hHHH--HHHhhhcccchHHHHHHHHH
Q psy866 6 LVKPSLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGF-SWVF--ELQERKRKDDLAYKRSFFVR 82 (132)
Q Consensus 6 ~~~~~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~-sw~~--elE~~~~~~~~~~vi~Wl~~ 82 (132)
|.+.++++.+.+...-...-+..+.-+.-+...+-.--.+.+.+.-. |+.-. .+-. ++|. .+++..+.
T Consensus 61 l~~d~v~~~i~~~~~ld~~~~~~~vS~~v~~~~~~~~~l~~~~~~k~-N~l~~d~fp~~~~~e~--------~~Vnm~~~ 131 (491)
T KOG1383|consen 61 LPKDAVLELINDELMLDGNPRLGLASGVVYWGEPELDKLIMEAYNKF-NPLHPDEFPVVRKLEA--------ECVNMIAN 131 (491)
T ss_pred CCHHHHHHHHHHHhccCCCcccCeeeEEEecCCcchhhHHHHHHhhc-CccCccccchhHHHHH--------HHHHHHHH
Confidence 56778888888765544443445555554444444433333333332 33211 1111 8999 99999999
Q ss_pred HhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 83 MVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 83 ~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
|+.-|+..-| ..|+|||++.+.+--.-|+
T Consensus 132 L~~~~~~~~g-~~t~G~Ses~l~~~k~~~~ 160 (491)
T KOG1383|consen 132 LFNAPSDSCG-CGTVGGSESGLAAKKSYRN 160 (491)
T ss_pred HhcCCccccC-ccccccchHHHHHHHHHHH
Confidence 9999977556 7899999996665554443
No 20
>PRK05367 glycine dehydrogenase; Provisional
Probab=85.49 E-value=0.87 Score=43.80 Aligned_cols=91 Identities=7% Similarity=-0.041 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccch-------HHH---HHHhhhcccchHHHH
Q psy866 8 KPSLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFS-------WVF---ELQERKRKDDLAYKR 77 (132)
Q Consensus 8 ~~~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~s-------w~~---elE~~~~~~~~~~vi 77 (132)
..++++.+.+.--....-..+..|.|+ |..-+.. .+++....++..... ..+ +++. +..
T Consensus 480 E~e~~r~~~~l~~kn~~~~~~~i~lGs--ct~~~~p-~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~--------e~q 548 (954)
T PRK05367 480 ETEMMRYLRRLEDKDLALDRSMIPLGS--CTMKLNA-AAEMIPITWPEFANLHPFAPAEQAAGYRELID--------QLE 548 (954)
T ss_pred HHHHHHHHHHHHhcCcCcccceeeCCc--CCCcCCH-HHHHHHHhCccccccCCCChHHHHHHHHHHHH--------HHH
Confidence 346777766543233222344556676 3333333 445555555543221 111 6667 899
Q ss_pred HHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 78 SFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 78 ~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
+|++++.|++. ......||+++|+++|.++|.
T Consensus 549 ~~l~eltG~d~---~sl~~~~ga~ge~agL~a~r~ 580 (954)
T PRK05367 549 AWLAEITGYDA---VSLQPNAGAQGEYAGLLAIRA 580 (954)
T ss_pred HHHHHHHCCCC---EEECccHHHHHHHHHHHHHHH
Confidence 99999999983 223456899999999999885
No 21
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=83.88 E-value=1.8 Score=34.62 Aligned_cols=69 Identities=9% Similarity=0.009 Sum_probs=48.6
Q ss_pred eCCCCCCHHHHHHHHHHHHhcCccchHHHHHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccc
Q psy866 34 YFPSGNSYPSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSA 111 (132)
Q Consensus 34 ~~ps~~s~~s~lgD~L~saln~~~~sw~~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR 111 (132)
|.|++..+...+-+.+...++.....|. ++-. .+.+.+++++|.|+...-.+++.|||.++...+...-
T Consensus 3 ~~p~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~ 71 (355)
T TIGR03301 3 LTPGPLSTSATVRDAMLVDWCHWDSEFN-DVTD--------QVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV 71 (355)
T ss_pred CcCCCCCCCHHHHHHhhhhccCCCHHHH-HHHH--------HHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc
Confidence 5788888888888888775554332233 4444 6889999999998754332478899998888776653
No 22
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=82.80 E-value=1.4 Score=35.68 Aligned_cols=68 Identities=7% Similarity=-0.003 Sum_probs=43.0
Q ss_pred eCCCCCCHHHHHHHHHHHHhcCccchHHHHHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcc
Q psy866 34 YFPSGNSYPSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASS 110 (132)
Q Consensus 34 ~~ps~~s~~s~lgD~L~saln~~~~sw~~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~A 110 (132)
|++|+.-.+..+.|-+...+......-..++.+ ++++++++.+|.++.... +++.+|++++..++.+.
T Consensus 3 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~--------~~~~~la~~~g~~~~~~~-~~~~~~t~al~~~~~~~ 70 (356)
T cd06451 3 LIPGPSNVPPRVLKAMNRPMLGHRSPEFLALMD--------EILEGLRYVFQTENGLTF-LLSGSGTGAMEAALSNL 70 (356)
T ss_pred ccCCCcCCCHHHHHHhCCCccCCCCHHHHHHHH--------HHHHHHHHHhcCCCCCEE-EEecCcHHHHHHHHHHh
Confidence 667777776777777754432211111114455 788999999999654444 67778899887766443
No 23
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=77.75 E-value=1.4 Score=38.79 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=35.3
Q ss_pred HHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCC-Ccchhhhhcccc
Q psy866 63 ELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPT-SRRPTCLASSAE 112 (132)
Q Consensus 63 elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs-~anl~aL~~AR~ 112 (132)
.+++ +...|+++.+|.++.... ++|+||| +++.++|.++|.
T Consensus 105 ~l~~--------~~e~~~~~~~G~~~~~~a-~~v~~~Tg~al~laL~alr~ 146 (444)
T TIGR03531 105 KLTN--------KLVKDFLKLLGLRSIKSA-FVVPLATGMSLSLCLSALRH 146 (444)
T ss_pred HHHH--------HHHHHHHHHcCCCCCCEE-EEECCHHHHHHHHHHHHcCC
Confidence 6788 888899999999866445 7899999 899999999995
No 24
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=75.13 E-value=2.2 Score=36.90 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccccccccccccC
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEEDEEAESDER 122 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~~~~~~~~~~ 122 (132)
.+.+++++++|. . .. .|+.+||++|.++|.+--+......|.+.
T Consensus 39 ~~e~~~ae~~g~-~--a~-~Fv~sGT~aN~lal~~~~~~~~~vi~~~~ 82 (342)
T COG2008 39 ALEQRIAELFGK-E--AA-LFVPSGTQANQLALAAHCQPGESVICHET 82 (342)
T ss_pred HHHHHHHHHhCC-c--eE-EEecCccHHHHHHHHHhcCCCCeEEEecc
Confidence 566699999999 2 34 79999999999999988777666666554
No 25
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=71.25 E-value=3.2 Score=28.95 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 74 AYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 74 ~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
..+.+.++++++ ++.... .+++|||.++..++.+.+..
T Consensus 3 ~~~~~~l~~~~~-~~~~~~-~~~~~~t~a~~~~~~~~~~~ 40 (170)
T cd01494 3 EELEEKLARLLQ-PGNDKA-VFVPSGTGANEAALLALLGP 40 (170)
T ss_pred HHHHHHHHHHcC-CCCCcE-EEeCCcHHHHHHHHHHhCCC
Confidence 356788999997 444445 78889999999988887653
No 26
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=68.84 E-value=12 Score=32.80 Aligned_cols=92 Identities=9% Similarity=0.011 Sum_probs=49.8
Q ss_pred cchHHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHH--hcCccchH-----HH---HHHhhhcccchHHH
Q psy866 7 VKPSLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDA--IGCIGFSW-----VF---ELQERKRKDDLAYK 76 (132)
Q Consensus 7 ~~~~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~sa--ln~~~~sw-----~~---elE~~~~~~~~~~v 76 (132)
+..++++++.+.-..... ..+ .|.|.=.+..-++..+-|.+.+. +. +-..| .+ +++. ..
T Consensus 50 se~~~~~~~~~l~~~n~~-~~~-~~~g~G~~~~~~~p~i~~~~~~~~~~~-~~tpYq~e~~sqG~lel~~--------~~ 118 (481)
T PRK04366 50 SELEVVRHYTRLSQKNYG-VDT-GFYPLGSCTMKYNPKINEKVARLPGFA-ELHPLQPEETVQGALELMY--------EL 118 (481)
T ss_pred CHHHHHHHHHHHHhcCCC-CCc-ceecCcccCCCCCHHHHHHHHhCcchh-cCCCCCChhhhhHHHHHHH--------HH
Confidence 344777776654322221 122 55555422233333444444443 32 11222 22 5556 89
Q ss_pred HHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 77 RSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 77 i~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
.+|+++++|++.. .+..++|+.+.++++.++|.
T Consensus 119 ~~~la~l~G~~~~---~l~~~~GA~a~~~~l~~~r~ 151 (481)
T PRK04366 119 QEWLKEITGMDAV---TLQPAAGAHGELTGLLMIRA 151 (481)
T ss_pred HHHHHHHhCCCce---EEEeCcHHHHHHHHHHHHHH
Confidence 9999999999732 25567788888887765443
No 27
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=63.54 E-value=5.8 Score=32.94 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=43.7
Q ss_pred eCCCCCCHHHHHHHHHHHHh----cCccchHHHHHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCC-CCCcchhhh
Q psy866 34 YFPSGNSYPSVLADMLSDAI----GCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVAT-PTSRRPTCL 107 (132)
Q Consensus 34 ~~ps~~s~~s~lgD~L~sal----n~~~~sw~~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsG-gs~anl~aL 107 (132)
|.|++...+--+.|.+...+ |...+.+...-...+-.+...++++-+++++|.|+.+.- +||+| +|.+.-+.+
T Consensus 3 ~~pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~v-vf~~gs~T~a~~~~~ 80 (355)
T cd00611 3 FSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKV-LFLQGGATGQFAAVP 80 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceE-EEEcCCchHHHHHHH
Confidence 67888777777777776665 222111111000001123344789999999998776655 89988 777765543
No 28
>PLN02409 serine--glyoxylate aminotransaminase
Probab=61.05 E-value=12 Score=31.57 Aligned_cols=69 Identities=12% Similarity=-0.022 Sum_probs=44.1
Q ss_pred eeeCCCCCCHHHHHHHHHHHHhcCccchHHHHHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhc
Q psy866 32 HAYFPSGNSYPSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLAS 109 (132)
Q Consensus 32 ~a~~ps~~s~~s~lgD~L~saln~~~~sw~~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~ 109 (132)
+=|.|++...+--+-+.+..........+..++-+ .+.+++++++|.+.... .+++++|+.++..++..
T Consensus 11 ~l~~pGP~~~~~~V~~a~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~g~~~~~~-vi~~~~gt~a~~~a~~~ 79 (401)
T PLN02409 11 HLFVPGPVNIPERVLRAMNRPNEDHRSPAFPALTK--------ELLEDVKYIFKTKSGTP-FIFPTTGTGAWESALTN 79 (401)
T ss_pred eeccCCCCCCCHHHHHHhcCCCCCCCCHHHHHHHH--------HHHHHHHHHhCCCCCCE-EEEeCCcHHHHHHHHHh
Confidence 33668887776666666555443332222225555 89999999999975433 37788888887766543
No 29
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=58.11 E-value=12 Score=30.69 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=40.2
Q ss_pred eCCCCCCHHHHHHHHHHHHhcCccchHHHHHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhc
Q psy866 34 YFPSGNSYPSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLAS 109 (132)
Q Consensus 34 ~~ps~~s~~s~lgD~L~saln~~~~sw~~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~ 109 (132)
|.|++......+-+.+..-++.....|...+ + ++.+-+++++|-++.+.-.++|+|||.++...+..
T Consensus 7 ~~pgp~~~~~~v~~~~~~~~~~~~~~~~~~~-~--------~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~ 73 (363)
T TIGR02326 7 LTPGPLTTSRTVKEAMLFDWCTWDSDYNIVV-E--------QIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGS 73 (363)
T ss_pred ecCCCCCCCHHHHHHhCCCCCCCChHHHHHH-H--------HHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHh
Confidence 5676665544444444333332222222233 3 57889999999976543336888999988876644
No 30
>COG4289 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.99 E-value=26 Score=31.18 Aligned_cols=46 Identities=13% Similarity=-0.078 Sum_probs=38.4
Q ss_pred HHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHH
Q psy866 17 HFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF 62 (132)
Q Consensus 17 ~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~ 62 (132)
..-+...|...||.|+|++.+--...--+|++.-+.+-.....|+.
T Consensus 96 ~k~i~~gTdP~h~dYwg~~~grdQrlve~A~L~~Al~lape~lWe~ 141 (458)
T COG4289 96 AKGIANGTDPTHPDYWGTVHGRDQRLVELAALGFALWLAPESLWEP 141 (458)
T ss_pred HHHHhcCCCCCCcchhcccccccchHHHHHHHHHHHHhChHhhccc
Confidence 3445667899999999999999888888888888888777778877
No 31
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=57.72 E-value=18 Score=31.18 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=45.7
Q ss_pred CceeeCCCCCCHH-HHHHHHHHHHhcCccchHHHHHHhhhc----ccchHHHHHHHHHHhCCCCCCCCCcccC-CCCCcc
Q psy866 30 RFHAYFPSGNSYP-SVLADMLSDAIGCIGFSWVFELQERKR----KDDLAYKRSFFVRMVSDPKIYNPKIAVA-TPTSRR 103 (132)
Q Consensus 30 rf~a~~ps~~s~~-s~lgD~L~saln~~~~sw~~elE~~~~----~~~~~~vi~Wl~~~lGlP~~~~G~i~ts-Ggs~an 103 (132)
+-|-|.|||...| .++-.+-.+.+|..+. -.+-||..-| .+.+.++.+=|+++++.|+.|.- .|.+ |||.+.
T Consensus 4 ~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~-g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~V-lfl~GggT~~~ 81 (364)
T PRK12462 4 NQLNFSGGPGALPDTVLEQVRQAVVELPET-GLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGV-VFLQGGSSLQF 81 (364)
T ss_pred ccceecCCCcCCCHHHHHHHHHHHhccccc-CccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeE-EEEeccHHHHH
Confidence 3567889986555 6677777777775441 1111222111 13455899999999999998876 5555 466554
Q ss_pred hh
Q psy866 104 PT 105 (132)
Q Consensus 104 l~ 105 (132)
-.
T Consensus 82 ea 83 (364)
T PRK12462 82 SM 83 (364)
T ss_pred HH
Confidence 43
No 32
>KOG1549|consensus
Probab=55.84 E-value=29 Score=30.96 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=51.0
Q ss_pred CCCCCCCceeeCCCCCCHHHHH---HHHHHHHh-cCcc--chHHH--HHHhhhcccchHHHHHHHHHHhCCCCCCCCCcc
Q psy866 24 THWQHPRFHAYFPSGNSYPSVL---ADMLSDAI-GCIG--FSWVF--ELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIA 95 (132)
Q Consensus 24 ~~~~hPrf~a~~ps~~s~~s~l---gD~L~sal-n~~~--~sw~~--elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~ 95 (132)
.|-.+|-|+-.--.++-.+.++ -+++...+ |+.. ..|.. ++|+ +++-+++|+|=...- - +|
T Consensus 39 ~~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~---------aR~~VAklInAd~~d-I-iF 107 (428)
T KOG1549|consen 39 HHGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEA---------AREQVAKLINADPSD-I-VF 107 (428)
T ss_pred cCCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHH---------HHHHHHHHhCCCCCc-E-EE
Confidence 4455677777776666666664 46667777 4433 35766 3766 889999999854332 4 89
Q ss_pred cCCCCCcchhhhh
Q psy866 96 VATPTSRRPTCLA 108 (132)
Q Consensus 96 tsGgs~anl~aL~ 108 (132)
|+|+|.+|=+.+.
T Consensus 108 ts~ATEs~Nlvl~ 120 (428)
T KOG1549|consen 108 TSGATESNNLVLK 120 (428)
T ss_pred eCCchHHHHHHHH
Confidence 9999999877554
No 33
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.71 E-value=42 Score=28.99 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcccCCCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHH---HHHhhhcccchHHHHHHHHHHhCC
Q psy866 10 SLIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVF---ELQERKRKDDLAYKRSFFVRMVSD 86 (132)
Q Consensus 10 ~~l~~l~~~ilp~~~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~---elE~~~~~~~~~~vi~Wl~~~lGl 86 (132)
++.+...+- +-..+...||.|+++........-=+|.+..+.+-+.-..|+. +..+ ++++||.+.-+.
T Consensus 77 ~~~~~~~~g-i~~GtdP~spdyw~~~~~~dQ~~VEaa~la~aL~~a~~~lW~~L~~~~k~--------~l~~wL~~~~~~ 147 (361)
T PF10022_consen 77 KLRELYRKG-IANGTDPKSPDYWGFIGDYDQRLVEAASLALALLRAPEWLWDPLDEEEKE--------NLVDWLKQIRGI 147 (361)
T ss_pred HHHHHHHHH-HHhcCCCCCccccCCcccchhhHhHHHHHHHHHHHCHHHHHhhCCHHHHH--------HHHHHHHhcCcC
Confidence 445555554 4456678999999997766555555677777777777778888 5555 899999988765
Q ss_pred C
Q psy866 87 P 87 (132)
Q Consensus 87 P 87 (132)
.
T Consensus 148 ~ 148 (361)
T PF10022_consen 148 K 148 (361)
T ss_pred C
Confidence 4
No 34
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=49.62 E-value=30 Score=27.08 Aligned_cols=42 Identities=12% Similarity=-0.022 Sum_probs=32.0
Q ss_pred HHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 63 ELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 63 elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
++|+ .+.+|+....|++......+++.|+++++..++.+...
T Consensus 40 ~l~~--------~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~ 81 (350)
T cd00609 40 ELRE--------AIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN 81 (350)
T ss_pred HHHH--------HHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC
Confidence 7888 99999999999865555546777888888777666544
No 35
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=48.94 E-value=4.9 Score=33.26 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 76 KRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 76 vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
+.+.+++++|.|.. +|+.+||++|.+++.+.-.
T Consensus 34 l~~~i~~l~g~e~a----~f~~sGT~An~~al~~~~~ 66 (290)
T PF01212_consen 34 LEERIAELFGKEAA----LFVPSGTMANQLALRAHLR 66 (290)
T ss_dssp HHHHHHHHHTSSEE----EEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEE----EEeCCCChHHHHHHHHHHh
Confidence 44478899999743 5899999999998866553
No 36
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=43.37 E-value=47 Score=23.76 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=29.3
Q ss_pred CCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHHHHHhhhcccchHHHHHHHHHHhCCC
Q psy866 24 THWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDP 87 (132)
Q Consensus 24 ~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~elE~~~~~~~~~~vi~Wl~~~lGlP 87 (132)
....+|.|-||||+.+..|+++. ||. .+|+..|+....+..
T Consensus 33 v~~~~~~f~gHFp~~Pv~PGvl~-----------------iE~------~aQ~~~~~~~~~~~~ 73 (138)
T PF07977_consen 33 VTPDEPFFDGHFPGDPVMPGVLL-----------------IEA------MAQAAGFLAGYSGLA 73 (138)
T ss_dssp E-TTSGGGGCSTTTS--B-HHHH-----------------HHH------HHHHHHHHHHHHCCS
T ss_pred eCCCCCEEEcCCCCCCCCCeEhH-----------------HHH------HHHHHHhHhhhcccc
Confidence 45679999999999999998876 555 557888888877763
No 37
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=42.53 E-value=17 Score=29.90 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
.+.+++++..+.+ -..|+.+|+++|..|+.+||..
T Consensus 75 ~la~~l~~~~~~~----~~~~~~sG~~a~~~A~~~a~~~ 109 (377)
T PRK02936 75 EVASLLAENSAGD----LVFFCNSGAEANEAALKLARKH 109 (377)
T ss_pred HHHHHHHhcCCCC----EEEEeCCcHHHHHHHHHHHHHh
Confidence 7777888776542 2378899999999999988753
No 38
>PRK02948 cysteine desulfurase; Provisional
Probab=40.18 E-value=35 Score=28.08 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSA 111 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR 111 (132)
.+.+.+++++|.++. . .++++|+++++..++.+..
T Consensus 47 ~~r~~la~~~g~~~~-~-i~~~~g~t~a~~~~~~~~~ 81 (381)
T PRK02948 47 VCRKTFAEMIGGEEQ-G-IYFTSGGTESNYLAIQSLL 81 (381)
T ss_pred HHHHHHHHHhCCCCC-e-EEEeCcHHHHHHHHHHHHH
Confidence 788999999997643 2 3688899999888765553
No 39
>PLN02452 phosphoserine transaminase
Probab=39.97 E-value=1.1e+02 Score=26.01 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=44.9
Q ss_pred CCceeeCCCCCC-HHHHHHHHHHHHhcCccchHHHHHHhhhc----ccchHHHHHHHHHHhCCCCCCCCCcccC-CCCCc
Q psy866 29 PRFHAYFPSGNS-YPSVLADMLSDAIGCIGFSWVFELQERKR----KDDLAYKRSFFVRMVSDPKIYNPKIAVA-TPTSR 102 (132)
Q Consensus 29 Prf~a~~ps~~s-~~s~lgD~L~saln~~~~sw~~elE~~~~----~~~~~~vi~Wl~~~lGlP~~~~G~i~ts-Ggs~a 102 (132)
.|-+-|-|||.. +..++..+....+|-.+. -.+-+|..-| .+.+..+.+=|+++++.|+.|.- +|.. |||.+
T Consensus 6 ~~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~-g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v-~~l~Gsgt~~ 83 (365)
T PLN02452 6 GRVFNFSAGPATLPANVLAKAQAELYNWEGS-GMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEV-LFLQGGASTQ 83 (365)
T ss_pred CceEeeeCCCCCCCHHHHHHHHHHHhccccc-CccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceE-EEEeCccHHH
Confidence 355678898855 467777777776653210 0001111000 13444788899999999988876 5665 55555
Q ss_pred chhh
Q psy866 103 RPTC 106 (132)
Q Consensus 103 nl~a 106 (132)
.-.+
T Consensus 84 ~ea~ 87 (365)
T PLN02452 84 FAAI 87 (365)
T ss_pred HHHH
Confidence 4443
No 40
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=39.42 E-value=49 Score=26.85 Aligned_cols=34 Identities=9% Similarity=0.008 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASS 110 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~A 110 (132)
.+++.+++++|.+.. .- +||+|++.++..++.+.
T Consensus 46 ~~r~~la~~~g~~~~-~v-~~~~g~t~a~~~~l~~l 79 (353)
T TIGR03235 46 RARKQVAEALGADTE-EV-IFTSGATESNNLAILGL 79 (353)
T ss_pred HHHHHHHHHhCCCCC-eE-EEeCCHHHHHHHHHHHH
Confidence 789999999998654 23 78889999887666544
No 41
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=38.87 E-value=25 Score=28.04 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
.+.+++++++| ++ .. ++++||+.++..++.+..+.
T Consensus 36 ~l~~~~a~~~g-~~--~~-~~~~~gt~a~~~~~~~l~~~ 70 (338)
T cd06502 36 KLEARAAELFG-KE--AA-LFVPSGTAANQLALAAHTQP 70 (338)
T ss_pred HHHHHHHHHhC-CC--eE-EEecCchHHHHHHHHHhcCC
Confidence 56678899999 43 23 78899999988877765443
No 42
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=38.06 E-value=47 Score=27.41 Aligned_cols=69 Identities=7% Similarity=0.064 Sum_probs=40.7
Q ss_pred ceeeCCCCCCHHHHHHHHHHHHh-cCc-----------cchHHHHHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCC
Q psy866 31 FHAYFPSGNSYPSVLADMLSDAI-GCI-----------GFSWVFELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVAT 98 (132)
Q Consensus 31 f~a~~ps~~s~~s~lgD~L~sal-n~~-----------~~sw~~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsG 98 (132)
++.++|+.+..+--+-+.+...+ +.. +..+..++|+ ...+++++++|.+.. - ++.++
T Consensus 21 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~g~~~~--~-v~~~s 89 (402)
T cd00378 21 TLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIED--------LAIERAKKLFGAEYA--N-VQPHS 89 (402)
T ss_pred CeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHH--------HHHHHHHHHhCCCce--e-eecCC
Confidence 55666666555444444444333 121 1112226777 788899999998642 2 45556
Q ss_pred CCCcchhhhhcc
Q psy866 99 PTSRRPTCLASS 110 (132)
Q Consensus 99 gs~anl~aL~~A 110 (132)
|+.++..++.+-
T Consensus 90 gt~a~~~~l~~l 101 (402)
T cd00378 90 GSQANLAVYFAL 101 (402)
T ss_pred cHHHHHHHHHHh
Confidence 788887765544
No 43
>KOG1368|consensus
Probab=37.62 E-value=43 Score=29.31 Aligned_cols=30 Identities=7% Similarity=-0.021 Sum_probs=22.9
Q ss_pred HHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 79 FFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 79 Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
-+++|+|= ++ | .|+..|||+|+.++.+==+
T Consensus 64 ~vA~l~GK--EA-g-LFv~SGTmgNllaIm~Hc~ 93 (384)
T KOG1368|consen 64 RVAELFGK--EA-G-LFVPSGTMGNLLAIMVHCH 93 (384)
T ss_pred HHHHHhCc--cc-e-eeecccccccHHHHHHHhc
Confidence 46778874 44 5 7999999999998876444
No 44
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=37.19 E-value=42 Score=27.55 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASS 110 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~A 110 (132)
.+++++++++|.+.. ..+||+|+|.++..++.+.
T Consensus 46 ~~r~~la~~~g~~~~--~i~~t~~~t~a~~~al~~~ 79 (379)
T TIGR03402 46 EAREQVAKLLGAEPD--EIIFTSGGTESDNTAIKSA 79 (379)
T ss_pred HHHHHHHHHhCCCCC--eEEEeCcHHHHHHHHHHHH
Confidence 788999999998643 2378999999998877654
No 45
>PF11752 DUF3309: Protein of unknown function (DUF3309); InterPro: IPR021738 This family is conserved in bacteria but its function is not known.
Probab=35.53 E-value=39 Score=21.52 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=17.2
Q ss_pred HcccCCCCCCCCceeeCCCCCC
Q psy866 19 LSHQVTHWQHPRFHAYFPSGNS 40 (132)
Q Consensus 19 ilp~~~~~~hPrf~a~~ps~~s 40 (132)
++-....|.|-|-+||.|++..
T Consensus 12 LigalP~wp~sr~wGy~PsG~l 33 (49)
T PF11752_consen 12 LIGALPTWPYSRGWGYGPSGGL 33 (49)
T ss_pred HHhcCCCCCCCCCCCcCCccHH
Confidence 3445568999999999998753
No 46
>KOG1404|consensus
Probab=35.10 E-value=13 Score=33.29 Aligned_cols=31 Identities=10% Similarity=-0.050 Sum_probs=25.3
Q ss_pred CCCCCCCCcccCCCCCcchhhhhcccccccc
Q psy866 86 DPKIYNPKIAVATPTSRRPTCLASSAEEDEE 116 (132)
Q Consensus 86 lP~~~~G~i~tsGgs~anl~aL~~AR~~~~~ 116 (132)
+|....-..|+++||+||-+||.+||.-.+.
T Consensus 105 ~P~~l~~vfF~nsGsEANelal~mar~Yt~~ 135 (442)
T KOG1404|consen 105 LPGDLKVVFFVNSGSEANELALKMARLYTGN 135 (442)
T ss_pred CCCCceEEEEecCCchHHHHHHHHHHHhcCC
Confidence 5666555689999999999999999986554
No 47
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=35.02 E-value=1e+02 Score=26.41 Aligned_cols=37 Identities=3% Similarity=-0.062 Sum_probs=27.9
Q ss_pred HHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcc
Q psy866 63 ELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASS 110 (132)
Q Consensus 63 elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~A 110 (132)
++|+ .+.+=+++++|-... - +++++|++||.+++.+-
T Consensus 74 ~lE~--------~~~~~la~l~g~~~a--l-v~~~SG~~A~~~~l~al 110 (416)
T PRK13034 74 EVEA--------LAIERAKQLFGCDYA--N-VQPHSGSQANGAVYLAL 110 (416)
T ss_pred HHHH--------HHHHHHHHHhCCCce--E-EecCCcHHHHHHHHHHh
Confidence 7887 788899999997532 1 34678899999977554
No 48
>PLN02651 cysteine desulfurase
Probab=34.83 E-value=51 Score=27.05 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASS 110 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~A 110 (132)
.+.+.+++++|.++. . .+||+|+|.++..++..+
T Consensus 47 ~~r~~la~~~g~~~~-~-v~~t~~~t~a~~~~l~~~ 80 (364)
T PLN02651 47 KARAQVAALIGADPK-E-IIFTSGATESNNLAIKGV 80 (364)
T ss_pred HHHHHHHHHhCCCCC-e-EEEeCCHHHHHHHHHHHH
Confidence 688999999998643 2 378999999987776554
No 49
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=34.01 E-value=38 Score=29.67 Aligned_cols=41 Identities=10% Similarity=0.060 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHHhCCCCCCCCCcccCCCCCcch----hhhhcccc
Q psy866 71 DDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRP----TCLASSAE 112 (132)
Q Consensus 71 ~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl----~aL~~AR~ 112 (132)
+.+.++++=+++++++|+.|.- +|..||-.+-. +.|+..|.
T Consensus 50 ~v~~~a~~~lreLl~iPd~Y~V-lflqGGat~qf~~~p~nLl~~~~ 94 (365)
T COG1932 50 NVLEEAEKDLRELLNIPDDYKV-LFLQGGATGQFAMAPMNLLGKRG 94 (365)
T ss_pred HHHHHHHHHHHHHhCCCCCceE-EEEcCccHHHHHHHHHhhhcccC
Confidence 6778999999999999999986 68886654433 24445553
No 50
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=33.81 E-value=85 Score=25.50 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASS 110 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~A 110 (132)
.+++++++++|.+..... ++|+|++++...++.+.
T Consensus 47 ~~~~~la~~~~~~~~~~v-~~~~g~t~a~~~~~~~l 81 (373)
T cd06453 47 AAREKVARFINAPSPDEI-IFTRNTTEAINLVAYGL 81 (373)
T ss_pred HHHHHHHHHhCCCCCCeE-EEeCCHHHHHHHHHHHh
Confidence 678899999998633333 78999998855544443
No 51
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=33.54 E-value=46 Score=27.14 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=39.1
Q ss_pred eCCCCCCHHHHHHHHHHHHhcCccchHHHHHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcc
Q psy866 34 YFPSGNSYPSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASS 110 (132)
Q Consensus 34 ~~ps~~s~~s~lgD~L~saln~~~~sw~~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~A 110 (132)
|.|++......+-+.+..-+......|.. +-. .+.+-+++++|-++...-.+++.+||.++..++...
T Consensus 9 ~~pgP~~~~~~~~~a~~~~~~~~~~~~~~-~~~--------~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l 76 (368)
T PRK13479 9 LTPGPLTTSRTVREAMLRDWGSWDDDFNA-LTA--------SVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL 76 (368)
T ss_pred ecCCCCCCCHHHHHHhCCCCCCCChHHHH-HHH--------HHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc
Confidence 56777655554444444433221111332 333 678889999998765443246677888777765554
No 52
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=33.21 E-value=28 Score=29.33 Aligned_cols=31 Identities=6% Similarity=-0.061 Sum_probs=22.5
Q ss_pred HHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 79 FFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 79 Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
-|+++++.+ -..|+++|++||..|+-+||..
T Consensus 85 ~L~~~~~~~----~~~f~~SGseA~e~Alk~ar~~ 115 (397)
T TIGR03246 85 KLVDATFAD----KVFFCNSGAEANEAALKLARRY 115 (397)
T ss_pred HHHhhCCCC----EEEEeCCcHHHHHHHHHHHHHH
Confidence 444555432 2368889999999999999864
No 53
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=32.77 E-value=34 Score=29.73 Aligned_cols=37 Identities=11% Similarity=-0.011 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
.+.+-|++++ |....-..|+++||+||-.|+-.||..
T Consensus 93 ~la~~l~~~~--p~~~~~v~f~~sGseA~e~AlklAr~~ 129 (442)
T PRK13360 93 ELANRIAEIA--PGGLNHVFFTNSGSESVDTALKIALAY 129 (442)
T ss_pred HHHHHHHHhC--CCCCCEEEEeCCcHHHHHHHHHHHHHH
Confidence 4455566665 333333468889999999999999975
No 54
>PRK07046 aminotransferase; Validated
Probab=31.52 E-value=43 Score=29.29 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEEDEE 116 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~~~~ 116 (132)
.+.+.|++++++. -..|+..||+|+..|+-.||...+.
T Consensus 119 ~lAe~l~~~~~~~----~v~F~nSGtEA~e~AlrlAR~~TGr 156 (453)
T PRK07046 119 WVGEELARRFGLP----YWQVATTATDANRFVLRWARAVTGR 156 (453)
T ss_pred HHHHHHHHHhCCC----EEEEECCHHHHHHHHHHHHHHhhCC
Confidence 6677788887532 2368999999999999999986554
No 55
>PRK07481 hypothetical protein; Provisional
Probab=31.38 E-value=32 Score=29.92 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
.+.+.|+++++ |....-..|+++||+|+-.|+-.||..
T Consensus 90 ~lae~L~~~~~-~~~~~~v~f~~sGsEAve~AlklAr~~ 127 (449)
T PRK07481 90 ELSYELIDMFA-PEGMRRVFFSSGGSDSVETALKLARQY 127 (449)
T ss_pred HHHHHHHHhcC-CCCCCEEEEcCchHHHHHHHHHHHHHH
Confidence 45566677664 333344468889999999999999974
No 56
>PRK06108 aspartate aminotransferase; Provisional
Probab=31.32 E-value=43 Score=27.35 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=28.5
Q ss_pred HHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcc
Q psy866 63 ELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASS 110 (132)
Q Consensus 63 elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~A 110 (132)
++++ .+.+|+.+..|.+-.....++|+|++.+...++.+.
T Consensus 65 ~lr~--------~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l 104 (382)
T PRK06108 65 ELRE--------ALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL 104 (382)
T ss_pred HHHH--------HHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh
Confidence 7888 889999999895444344466778888876655443
No 57
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=31.26 E-value=31 Score=29.49 Aligned_cols=38 Identities=5% Similarity=-0.094 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEED 114 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~~ 114 (132)
.+.+-|++++ |....-..|+..|++||..|+-+||...
T Consensus 90 ~la~~L~~~~--~~~~~~v~f~~SGseA~e~AlklAr~~t 127 (433)
T PRK08117 90 KLAEELAEIT--PGGLDCFFFSNSGAEAIEGALKLAKHVT 127 (433)
T ss_pred HHHHHHHHhC--CCCCCEEEEeCcHHHHHHHHHHHHHHhc
Confidence 4555566665 3333344688899999999999999744
No 58
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=30.85 E-value=30 Score=29.45 Aligned_cols=34 Identities=0% Similarity=-0.055 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
...++|++..++ .-..|+++|++||..|+-+||.
T Consensus 82 ~la~~l~~~~~~----~~v~f~~SGseA~e~Aik~ar~ 115 (395)
T PRK03715 82 KLAGLLTQHSCF----DKVFFANSGAEANEGAIKLARK 115 (395)
T ss_pred HHHHHHhhccCC----CEEEEeCCcHHHHHHHHHHHHH
Confidence 677777776443 2247899999999999999985
No 59
>PRK07179 hypothetical protein; Provisional
Probab=30.84 E-value=65 Score=26.93 Aligned_cols=33 Identities=6% Similarity=-0.076 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 76 KRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 76 vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
..+-+++++|.++ . +++++|++||..++.+...
T Consensus 104 le~~la~~~g~~~---~-~~~~sG~~An~~~l~~l~~ 136 (407)
T PRK07179 104 FEKKLAAFTGFES---C-LLCQSGWAANVGLLQTIAD 136 (407)
T ss_pred HHHHHHHHhCCCc---E-EEECCHHHHHHHHHHHhCC
Confidence 3346667777643 2 7899999999988765543
No 60
>PRK07777 aminotransferase; Validated
Probab=29.81 E-value=86 Score=25.90 Aligned_cols=38 Identities=11% Similarity=-0.083 Sum_probs=27.3
Q ss_pred HHHhhhcccchHHHHHHHHHHhCCCCCCC-CCcccCCCCCcchhhhh
Q psy866 63 ELQERKRKDDLAYKRSFFVRMVSDPKIYN-PKIAVATPTSRRPTCLA 108 (132)
Q Consensus 63 elE~~~~~~~~~~vi~Wl~~~lGlP~~~~-G~i~tsGgs~anl~aL~ 108 (132)
++++ .+.+|+.+..|.+-... ..++|+|++.+...++.
T Consensus 65 ~lr~--------~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 103 (387)
T PRK07777 65 ELRA--------AIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVL 103 (387)
T ss_pred HHHH--------HHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHH
Confidence 7777 88889999989853332 34678899988766443
No 61
>PRK06107 aspartate aminotransferase; Provisional
Probab=29.79 E-value=59 Score=27.20 Aligned_cols=55 Identities=11% Similarity=-0.092 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCccchHHH-----HHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhh
Q psy866 45 LADMLSDAIGCIGFSWVF-----ELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCL 107 (132)
Q Consensus 45 lgD~L~saln~~~~sw~~-----elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL 107 (132)
+.+.+..+++.....|.. ++++ .+.+|+.+..|.+-...-.++|+|++.+....+
T Consensus 51 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~--------~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~ 110 (402)
T PRK06107 51 IKQAAVAAIERGETKYTLVNGTPALRK--------AIIAKLERRNGLHYADNEITVGGGAKQAIFLAL 110 (402)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHH--------HHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHH
Confidence 556666655432222222 7777 888999998888533334467778888876654
No 62
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=29.43 E-value=29 Score=26.32 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.2
Q ss_pred CCCCCCCceeeCCCCCCHHHHHH
Q psy866 24 THWQHPRFHAYFPSGNSYPSVLA 46 (132)
Q Consensus 24 ~~~~hPrf~a~~ps~~s~~s~lg 46 (132)
...++|-|.||||+-|-.|+++.
T Consensus 41 Vt~nepfF~gHFP~~PimPGVLi 63 (147)
T COG0764 41 VTINEPFFTGHFPGDPIMPGVLI 63 (147)
T ss_pred cCCCCCeeCCcCCCCCCcchhHH
Confidence 44579999999999999999986
No 63
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=28.98 E-value=37 Score=24.20 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=21.0
Q ss_pred CCCCCCCCceeeCCCCCCHHHHHH-HHHH
Q psy866 23 VTHWQHPRFHAYFPSGNSYPSVLA-DMLS 50 (132)
Q Consensus 23 ~~~~~hPrf~a~~ps~~s~~s~lg-D~L~ 50 (132)
....+||.|-||||+.+..|+++. |+++
T Consensus 35 ~v~~~~~~f~gHFp~~pv~Pg~l~iE~~a 63 (140)
T TIGR01750 35 NVTINEPFFQGHFPEKPIMPGVLIVEALA 63 (140)
T ss_pred EcCCCCCeecCCCcCcCcChHHHHHHHHH
Confidence 345678999999999998887654 4443
No 64
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=28.68 E-value=43 Score=28.51 Aligned_cols=37 Identities=8% Similarity=-0.017 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
.+.+-|++++ |....-..|+.+|++||-.|+-.||..
T Consensus 89 ~la~~l~~~~--p~~~~~v~f~~sGseA~e~A~klar~~ 125 (423)
T PRK05964 89 RLAQRLVALT--PGGLDHVFFSDSGSVAVEVALKMALQY 125 (423)
T ss_pred HHHHHHHHhC--CCCCCEEEEeCCcHHHHHHHHHHHHHH
Confidence 4555666665 433334478899999999999999864
No 65
>PRK08361 aspartate aminotransferase; Provisional
Probab=28.42 E-value=54 Score=27.23 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCccchH-----HHHHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhh
Q psy866 43 SVLADMLSDAIGCIGFSW-----VFELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLA 108 (132)
Q Consensus 43 s~lgD~L~saln~~~~sw-----~~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~ 108 (132)
..+.|.+..++......| ..++++ .+.+|+.+..|.+-.....++|+|++.++..++.
T Consensus 49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~--------~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~ 111 (391)
T PRK08361 49 KNIKEAAKRALDEGWTHYTPNAGIPELRE--------AIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFE 111 (391)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCcHHHHH--------HHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHH
Confidence 345555555543322222 127888 8889998888865433444677788888766543
No 66
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=28.41 E-value=39 Score=29.37 Aligned_cols=40 Identities=0% Similarity=-0.131 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEEDEE 116 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~~~~ 116 (132)
...+-|+++++ ....-..|+.+||+||-.|+-.||...+.
T Consensus 88 ~la~~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~tgr 127 (443)
T PRK08360 88 LLAEKLIEIAP--GDNPKVSFGLSGSDANDGAIKFARAYTKR 127 (443)
T ss_pred HHHHHHHHhCC--CCCCEEEEcCCHHHHHHHHHHHHHHhcCC
Confidence 34444666553 22234578889999999999999975443
No 67
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=28.23 E-value=1.5e+02 Score=24.34 Aligned_cols=29 Identities=0% Similarity=-0.039 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCCCCCCCcccC-CCCCcchh
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVA-TPTSRRPT 105 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~ts-Ggs~anl~ 105 (132)
.+.+|+++++|.+... - .++. |++.++..
T Consensus 68 ~~~~~la~~~g~~~~~-v-~~~~~g~~~~~~~ 97 (398)
T cd00613 68 ELQTMLCELTGMDVAN-A-SLQDEATAAAEAA 97 (398)
T ss_pred HHHHHHHHHHCCCccc-e-eccCchHHHHHHH
Confidence 8999999999986432 2 3555 44444443
No 68
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=28.21 E-value=44 Score=28.64 Aligned_cols=74 Identities=8% Similarity=0.031 Sum_probs=42.7
Q ss_pred CCCceeeCCCCCCHHHHHHHHHHHH-hcCccch-HHHHHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchh
Q psy866 28 HPRFHAYFPSGNSYPSVLADMLSDA-IGCIGFS-WVFELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPT 105 (132)
Q Consensus 28 hPrf~a~~ps~~s~~s~lgD~L~sa-ln~~~~s-w~~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~ 105 (132)
.|..|+.++.+......+.+.+... .|.+... ...++++ .+.+|+.+..|++-...-.++|+|++.+...
T Consensus 61 ~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~--------aia~~~~~~~~~~~~~~~v~it~G~~~al~l 132 (430)
T PLN00145 61 DPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARR--------AIAEYLSRDLPYELSTDDIYLTAGCAQAIEI 132 (430)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHH--------HHHHHHhhccCCCCChhhEEEeCCHHHHHHH
Confidence 4666665555554444455544331 2222211 1227778 8888888776665333344678898988877
Q ss_pred hhhc
Q psy866 106 CLAS 109 (132)
Q Consensus 106 aL~~ 109 (132)
++.+
T Consensus 133 ~~~~ 136 (430)
T PLN00145 133 IMSV 136 (430)
T ss_pred HHHH
Confidence 5554
No 69
>PRK07683 aminotransferase A; Validated
Probab=27.59 E-value=60 Score=27.03 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCccchHH-----HHHHhhhcccchHHHHHHHHHHhCCCCCCC-CCcccCCCCCcchhhhhc
Q psy866 43 SVLADMLSDAIGCIGFSWV-----FELQERKRKDDLAYKRSFFVRMVSDPKIYN-PKIAVATPTSRRPTCLAS 109 (132)
Q Consensus 43 s~lgD~L~saln~~~~sw~-----~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~-G~i~tsGgs~anl~aL~~ 109 (132)
..+.+.+..++......|. .++++ .+.+|+.+..|.+-... ..++|+|++.+...++.+
T Consensus 44 ~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~--------~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~ 108 (387)
T PRK07683 44 SHVKEAAKRAITENYTSYTHNAGLLELRK--------AACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRT 108 (387)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHH--------HHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHH
Confidence 3455666666654333332 27888 88999988878753332 336788889887765544
No 70
>PRK12403 putative aminotransferase; Provisional
Probab=26.67 E-value=42 Score=29.33 Aligned_cols=37 Identities=5% Similarity=0.080 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
...+.|+++++ ....-..|+.+||+||..|+-.||..
T Consensus 102 ~lae~L~~~~p--~~~~~v~f~~SGseA~e~AiklAr~~ 138 (460)
T PRK12403 102 ELSELLFSLLP--GHYSHAIYTNSGSEANEVLIRTVRRY 138 (460)
T ss_pred HHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHH
Confidence 44556666654 22223468889999999999999854
No 71
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=26.52 E-value=54 Score=22.18 Aligned_cols=29 Identities=24% Similarity=0.140 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhCCCCCCCCCcccCCCCCcc
Q psy866 73 LAYKRSFFVRMVSDPKIYNPKIAVATPTSRR 103 (132)
Q Consensus 73 ~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~an 103 (132)
=..+++||++.||+|+..- .+.+|.++.+
T Consensus 42 N~ali~~La~~l~v~ks~i--~i~~G~~Sr~ 70 (77)
T PF02594_consen 42 NKALIRFLAKALGVPKSDI--EIVSGHTSRN 70 (77)
T ss_dssp HHHHHHHHHHHCT--TTCE--EECC-CCCSE
T ss_pred HHHHHHHHHHHhCCCcccE--EEEecCCCCc
Confidence 3478999999999998743 5777777654
No 72
>PF13700 DUF4158: Domain of unknown function (DUF4158)
Probab=25.94 E-value=1.3e+02 Score=22.31 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=38.2
Q ss_pred CceeeCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHhhhcccchHHHHHHHHHHhCCC
Q psy866 30 RFHAYFPS-GNSYPSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDP 87 (132)
Q Consensus 30 rf~a~~ps-~~s~~s~lgD~L~saln~~~~sw~~elE~~~~~~~~~~vi~Wl~~~lGlP 87 (132)
|+.|+|+. ....|..+-++++.-++.....|..-- ++..|...=..++.+.+|+-
T Consensus 55 r~~g~f~~~~~~~p~~~i~~va~ql~~~~~~~~~y~---~r~~T~~~h~~~I~~~lg~r 110 (166)
T PF13700_consen 55 RALGRFPDDPEDIPKADIEYVAKQLGLPPSDLSSYA---QRSRTRYRHRAEIREYLGYR 110 (166)
T ss_pred hcccccccccccCCHHHHHHHHHHhCCchHHHHhhh---hhhhHHHHHHHHHHHHhCcc
Confidence 56778887 788899999999999988766655511 12233445566777778873
No 73
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=25.80 E-value=35 Score=28.08 Aligned_cols=36 Identities=3% Similarity=-0.069 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEED 114 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~~ 114 (132)
...++|++..|.+ -.+++.||++|+..++-++|...
T Consensus 85 ~la~~l~~~~~~~----~v~~~~gg~eA~~~al~~a~~~~ 120 (396)
T PRK02627 85 ELAEKLVELSGMD----KVFFCNSGAEANEAAIKLARKYG 120 (396)
T ss_pred HHHHHHHhhcCCC----EEEECCCcHHHHHHHHHHHHHHh
Confidence 6677888887653 23788999999999999888643
No 74
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=25.73 E-value=70 Score=26.05 Aligned_cols=33 Identities=6% Similarity=-0.066 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSA 111 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR 111 (132)
...+++++.+|.+ -.+++.||++++..++.++|
T Consensus 73 ~l~~~la~~~g~~----~~~~~~sg~~a~~~a~~~~~ 105 (379)
T TIGR00707 73 ELAEKLVEHSGAD----RVFFCNSGAEANEAALKLAR 105 (379)
T ss_pred HHHHHHHhhCCCC----EEEEeCCcHHHHHHHHHHHH
Confidence 5666888888875 22677899999999988775
No 75
>PRK07483 hypothetical protein; Provisional
Probab=25.38 E-value=54 Score=28.49 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
.+.+.|++++ |....-..|+.+||.||-.|+-.||..
T Consensus 77 ~lae~L~~~~--p~~~~~v~f~~sGsEAve~AlklAr~~ 113 (443)
T PRK07483 77 ALADRLVAAA--PAGLEHVYFVSGGSEAVEAALKLARQY 113 (443)
T ss_pred HHHHHHHHhC--CCCCCEEEEcCCcHHHHHHHHHHHHHH
Confidence 4455666655 322333467888999999999988865
No 76
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=25.34 E-value=53 Score=27.03 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
.+.+.+++++|.+. .-..|+.||+.+|..++.++|.
T Consensus 83 ~l~~~l~~~~~~~~--~~v~~~~sgsea~~~al~~~~~ 118 (413)
T cd00610 83 ELAELLLALTPEGL--DKVFFVNSGTEAVEAALKLARA 118 (413)
T ss_pred HHHHHHHHhCCCCC--CEEEEcCcHHHHHHHHHHHHHH
Confidence 67778888887422 2337889999999999998874
No 77
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=25.08 E-value=88 Score=26.13 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhcCccchHHHHHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcc
Q psy866 39 NSYPSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASS 110 (132)
Q Consensus 39 ~s~~s~lgD~L~saln~~~~sw~~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~A 110 (132)
+.++.-+-|.+..+.+.... ..++.+ ...+++++++|-. .. ++|+|+|+++..++.+.
T Consensus 23 s~~~~~v~~a~~~~~~~~~~--~~~~~~--------~~~~~~a~~~g~~---~~-~~~~g~t~al~~al~al 80 (363)
T TIGR01437 23 STVSDEVADAQKRGAQNYFE--IKELVN--------KTGEYIANLLGVE---DA-VIVSSASAGIAQSVAAV 80 (363)
T ss_pred CCCCHHHHHHHHHHHhcCCC--HHHHHH--------HHHHHHHHhhCCC---eE-EEEcCHHHHHHHHHHHH
Confidence 33444455555544433221 224555 7788999999864 23 79999999999887765
No 78
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=24.95 E-value=1.1e+02 Score=23.01 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=20.4
Q ss_pred CCCCCCCCceeeCCCCCCHHHHHH
Q psy866 23 VTHWQHPRFHAYFPSGNSYPSVLA 46 (132)
Q Consensus 23 ~~~~~hPrf~a~~ps~~s~~s~lg 46 (132)
....+++.|-||||..+..|++|.
T Consensus 34 ~v~~~e~ff~gHFp~~pvmPG~L~ 57 (150)
T cd01287 34 DIDPDDWFFPCHFHGDPVMPGSLG 57 (150)
T ss_pred EcCCCCceEcCCCCCCCcCchHHH
Confidence 356678999999999999998876
No 79
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=24.81 E-value=28 Score=29.12 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
.+-+-|++++|++. ..|++.|++||..|+-.||..
T Consensus 83 ~l~~~l~~~~~~~~----~~~~~SGs~A~e~ai~~a~~~ 117 (401)
T TIGR01885 83 EFAEYVTKLFGYDK----VLPMNTGAEAVETAIKLARKW 117 (401)
T ss_pred HHHHHHHhhcCCCE----EEEeCccHHHHHHHHHHHHHH
Confidence 44456666677642 368889999999999999764
No 80
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=24.40 E-value=1.4e+02 Score=25.00 Aligned_cols=37 Identities=0% Similarity=-0.068 Sum_probs=26.3
Q ss_pred HHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcc
Q psy866 63 ELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASS 110 (132)
Q Consensus 63 elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~A 110 (132)
++|+ .+++++++++|.+.. - +++++|+.++..++.+.
T Consensus 71 ~~e~--------~~~~~la~~~g~~~~--~-i~~~sgt~al~~~l~~l 107 (416)
T PRK00011 71 VVEQ--------LAIDRAKELFGAEYA--N-VQPHSGSQANAAVYFAL 107 (416)
T ss_pred HHHH--------HHHHHHHHHhCCCce--e-eecCCchHHHHHHHHHh
Confidence 6777 789999999998643 2 44455788887665443
No 81
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=24.23 E-value=43 Score=27.18 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLAS 109 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~ 109 (132)
.+.+++++++|.++...- ++|.|++.++..++.+
T Consensus 48 ~~~~~la~~~~~~~~~~v-~~~~g~t~al~~~~~~ 81 (376)
T TIGR01977 48 ETRQLLAKLFNAPSSAHV-VFTNNATTALNIALKG 81 (376)
T ss_pred HHHHHHHHHhCcCCCCeE-EEeCCHHHHHHHHHHh
Confidence 677899999998755333 6788888887766554
No 82
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=24.06 E-value=48 Score=27.81 Aligned_cols=34 Identities=0% Similarity=-0.103 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 76 KRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 76 vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
..+.|+++.+.+ -..|+.+|++||..|+-.||..
T Consensus 87 l~~~l~~~~~~~----~~~~~~sGseA~e~a~klar~~ 120 (403)
T PRK05093 87 LAKKLIDATFAE----RVFFANSGAEANEAAFKLARRY 120 (403)
T ss_pred HHHHHHhhCCCC----EEEEeCchHHHHHHHHHHHHHH
Confidence 344555555442 2367889999999999999865
No 83
>PRK08912 hypothetical protein; Provisional
Probab=23.91 E-value=1.5e+02 Score=24.50 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=26.3
Q ss_pred HHHhhhcccchHHHHHHHHHHhCCCCCCC-CCcccCCCCCcchhhh
Q psy866 63 ELQERKRKDDLAYKRSFFVRMVSDPKIYN-PKIAVATPTSRRPTCL 107 (132)
Q Consensus 63 elE~~~~~~~~~~vi~Wl~~~lGlP~~~~-G~i~tsGgs~anl~aL 107 (132)
++++ .+.+|+.+..|.+-... ..++|+|++++...++
T Consensus 67 ~lr~--------~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~ 104 (387)
T PRK08912 67 ELRQ--------AVAAHYARFQGLDLDPETEVMVTSGATEALAAAL 104 (387)
T ss_pred HHHH--------HHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHH
Confidence 7888 88899998888754433 3367788888765433
No 84
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.71 E-value=61 Score=28.44 Aligned_cols=37 Identities=14% Similarity=0.005 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
.+.+-|++++ |....-..|+.+||.||-.|+-.||..
T Consensus 94 ~lae~L~~~~--p~~~~~v~f~~sGsEAve~AlKlAr~~ 130 (466)
T PRK07030 94 ELSERLVKIT--PPGLSRCFYADNGSSAIEVALKMSFHY 130 (466)
T ss_pred HHHHHHHHhC--CCCcCEEEEeCCcHHHHHHHHHHHHHH
Confidence 4445555554 433344578889999999999999864
No 85
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=23.59 E-value=53 Score=27.53 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHhCCCCCCCCCcccCC-CCCcchhhhhc
Q psy866 72 DLAYKRSFFVRMVSDPKIYNPKIAVAT-PTSRRPTCLAS 109 (132)
Q Consensus 72 ~~~~vi~Wl~~~lGlP~~~~G~i~tsG-gs~anl~aL~~ 109 (132)
.++.+++-++++++.|+.+.- +|++| ||.+.-.++..
T Consensus 38 ~~~~~~~~l~~l~~~~~~~~v-~~~~gsgT~a~ea~~~n 75 (349)
T TIGR01364 38 VANEAESDLRELLNIPDNYEV-LFLQGGATGQFAAVPLN 75 (349)
T ss_pred HHHHHHHHHHHHhCCCCCceE-EEEcCCchHHHHHHHHh
Confidence 445788899999998877655 67877 88887766544
No 86
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=23.33 E-value=58 Score=26.99 Aligned_cols=34 Identities=3% Similarity=-0.085 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
...+.|++..+. + -..|+.+|++||..++-+||.
T Consensus 77 ~la~~l~~~~~~-~---~v~~~~sGseA~~~al~~ar~ 110 (389)
T PRK01278 77 RLAERLVENSFA-D---KVFFTNSGAEAVECAIKTARR 110 (389)
T ss_pred HHHHHHHhhCCC-C---EEEEcCCcHHHHHHHHHHHHH
Confidence 344455555532 1 237889999999999999975
No 87
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.17 E-value=1.2e+02 Score=25.93 Aligned_cols=65 Identities=12% Similarity=-0.022 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhcCc--cchHHH---HHHhhhcccchHHHHHHHHHHhCCCCCCCC-CcccCCCCCcchhhhhcccc
Q psy866 40 SYPSVLADMLSDAIGCI--GFSWVF---ELQERKRKDDLAYKRSFFVRMVSDPKIYNP-KIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 40 s~~s~lgD~L~saln~~--~~sw~~---elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G-~i~tsGgs~anl~aL~~AR~ 112 (132)
..|..+-|.+..+++.. ..++.. ++++ .+.+|+.+..|+.-...- .++|.|++.+...++.+--+
T Consensus 41 ~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LRe--------aia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~ 111 (393)
T COG0436 41 PTPEHIIEAAIEALEEGGTHYTPSAGIPELRE--------AIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLN 111 (393)
T ss_pred CCCHHHHHHHHHHHhcccCCCCCCCCCHHHHH--------HHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcC
Confidence 33455556666666543 333333 8888 999999999885433322 36777999999877655444
No 88
>PRK06207 aspartate aminotransferase; Provisional
Probab=23.05 E-value=1.5e+02 Score=24.99 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=26.5
Q ss_pred HHHhhhcccchHHHHHHHHHHhCCCCCC-CCCcccCCCCCcchhhhh
Q psy866 63 ELQERKRKDDLAYKRSFFVRMVSDPKIY-NPKIAVATPTSRRPTCLA 108 (132)
Q Consensus 63 elE~~~~~~~~~~vi~Wl~~~lGlP~~~-~G~i~tsGgs~anl~aL~ 108 (132)
++.+ .+.+|+.+..|.+-.. .-.++|+|++.+...++.
T Consensus 82 ~LR~--------aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~ 120 (405)
T PRK06207 82 DIRE--------LLAARLAAFTGAPVDAADELIITPGTQGALFLAVA 120 (405)
T ss_pred HHHH--------HHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHH
Confidence 7888 8999999999976333 333566677777655443
No 89
>PRK08636 aspartate aminotransferase; Provisional
Probab=22.44 E-value=1.4e+02 Score=24.99 Aligned_cols=36 Identities=8% Similarity=-0.067 Sum_probs=25.8
Q ss_pred HHHhhhcccchHHHHHHHHHHhCCCCCCC-CCcccCCCCCcchhh
Q psy866 63 ELQERKRKDDLAYKRSFFVRMVSDPKIYN-PKIAVATPTSRRPTC 106 (132)
Q Consensus 63 elE~~~~~~~~~~vi~Wl~~~lGlP~~~~-G~i~tsGgs~anl~a 106 (132)
++++ .+.+|+.+..|.+-... -.++|+|++++-...
T Consensus 75 ~lR~--------~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~ 111 (403)
T PRK08636 75 KLRL--------AICNWYKRKYNVDLDPETEVVATMGSKEGYVHL 111 (403)
T ss_pred HHHH--------HHHHHHHHHhCCCCCCCCeEEECCChHHHHHHH
Confidence 6778 89999999989764443 335677887776554
No 90
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=22.36 E-value=1.4e+02 Score=25.17 Aligned_cols=77 Identities=8% Similarity=0.020 Sum_probs=46.9
Q ss_pred CCCCCceeeCCCCCC------HHHHHHHHHHHHhcCcc-chHH-----HHHHhhhcccchHHHHHHHHHHhC------CC
Q psy866 26 WQHPRFHAYFPSGNS------YPSVLADMLSDAIGCIG-FSWV-----FELQERKRKDDLAYKRSFFVRMVS------DP 87 (132)
Q Consensus 26 ~~hPrf~a~~ps~~s------~~s~lgD~L~saln~~~-~sw~-----~elE~~~~~~~~~~vi~Wl~~~lG------lP 87 (132)
..++.+..+-.+.++ ++..+.+.+..+++... ..|. .++.+ .+.+|+.+.++ .+
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~--------aia~~~~~~~~~~~~~~~~ 101 (412)
T PTZ00433 30 PSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEARE--------AVATYWRNSFVHKESLKST 101 (412)
T ss_pred CCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHH--------HHHHHHHhhccccccccCC
Confidence 466777777766654 56677777777765421 1222 27777 88888887654 22
Q ss_pred CCCCCCcccCCCCCcchhhhhcc
Q psy866 88 KIYNPKIAVATPTSRRPTCLASS 110 (132)
Q Consensus 88 ~~~~G~i~tsGgs~anl~aL~~A 110 (132)
-...-.++|+|++++...++.+.
T Consensus 102 ~~~~~i~it~G~~~al~~~~~~~ 124 (412)
T PTZ00433 102 IKKDNVVLCSGVSHAILMALTAL 124 (412)
T ss_pred CChhhEEEeCChHHHHHHHHHHh
Confidence 11223367778888877655544
No 91
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=22.12 E-value=65 Score=27.83 Aligned_cols=39 Identities=3% Similarity=0.042 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCCC-CCCcccCCCCCcchhhhhccccccc
Q psy866 75 YKRSFFVRMVSDPKIY-NPKIAVATPTSRRPTCLASSAEEDE 115 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~-~G~i~tsGgs~anl~aL~~AR~~~~ 115 (132)
.+.+-|++++ |... .-..|+.+||+||-.|+-.||...+
T Consensus 101 ~la~~L~~~~--p~~~~~~v~f~~sGseA~e~AlklAr~~tg 140 (451)
T PRK06918 101 ELAEKLAALA--PGSFDKKVLFLNSGAEAVENAVKIARKYTK 140 (451)
T ss_pred HHHHHHHHhC--CCCCCCEEEEcCCcHHHHHHHHHHHHHHhC
Confidence 3444555554 3222 2347888999999999999997544
No 92
>PRK05764 aspartate aminotransferase; Provisional
Probab=21.86 E-value=1e+02 Score=25.40 Aligned_cols=58 Identities=10% Similarity=-0.057 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCccchHH-----HHHHhhhcccchHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhc
Q psy866 44 VLADMLSDAIGCIGFSWV-----FELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLAS 109 (132)
Q Consensus 44 ~lgD~L~saln~~~~sw~-----~elE~~~~~~~~~~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~ 109 (132)
.+.+.+...++.....|. ..+++ ...+|+.+..|..-...-.++|+|++++...++.+
T Consensus 48 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~--------~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~ 110 (393)
T PRK05764 48 HIKEAAIEALDDGKTKYTPAAGIPELRE--------AIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMA 110 (393)
T ss_pred HHHHHHHHHHhcCCCCcCCCCChHHHHH--------HHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHH
Confidence 355555555543222232 26777 88888888877532223336777888887665444
No 93
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=21.86 E-value=72 Score=27.88 Aligned_cols=37 Identities=5% Similarity=0.026 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
.+.+-|++++ |....-..|+.+||.||-.|+-.||..
T Consensus 103 ~lae~L~~~~--p~~~~~v~f~~SGseAve~AlklAr~~ 139 (460)
T PRK06916 103 LLAEKLIEVV--PEGLKKVFYSDSGATAVEIAIKMAFQY 139 (460)
T ss_pred HHHHHHHHhC--CCCCCEEEEeCCcHHHHHHHHHHHHHH
Confidence 3344455554 433334578889999999999999973
No 94
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=21.24 E-value=42 Score=27.90 Aligned_cols=38 Identities=5% Similarity=0.017 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
...++|++.+|.+. ..-..|+.||+++|..++-++|..
T Consensus 89 ~la~~l~~~~~~~~-~~~v~~~~sgsea~~~al~~~~~~ 126 (398)
T PRK03244 89 ALAERLVELLGAPE-GGRVFFCNSGAEANEAAFKLARLT 126 (398)
T ss_pred HHHHHHHHhCCCCC-CCEEEEeCchHHHHHHHHHHHHHH
Confidence 56668888887532 123478889999999999988873
No 95
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=20.96 E-value=1.8e+02 Score=25.58 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=26.6
Q ss_pred CCCCCCCceeeCCCCCCHHHHHHHHHHHHhcCccchHHHHHHhhhcccchHHHHHHHHHHh
Q psy866 24 THWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVFELQERKRKDDLAYKRSFFVRMV 84 (132)
Q Consensus 24 ~~~~hPrf~a~~ps~~s~~s~lgD~L~saln~~~~sw~~elE~~~~~~~~~~vi~Wl~~~l 84 (132)
.||.+. .|||||+=. ...++|=-|...+...... ++.+-++-.++-.++||.+-+
T Consensus 307 ~HW~~g-~fGYfptYa-lG~l~Aaql~~~~~~~~~~----~~~~i~~g~f~~~~~wL~e~i 361 (396)
T cd06460 307 IHWSGG-SFGYFPTYT-LGNLYAAQLFAAAKKDLPD----IDEQIERGDFSPLLEWLRENI 361 (396)
T ss_pred cccccC-cCCcCchhH-HHHHHHHHHHHHHHHhCcc----HHHHHhccChHHHHHHHHHHH
Confidence 788874 478988542 2222222222222222111 222112244556888998765
No 96
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=20.91 E-value=82 Score=27.01 Aligned_cols=41 Identities=2% Similarity=-0.198 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEEDEE 116 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~~~~ 116 (132)
...+-|++++..+ ...-..|+.+||+||-.|+-.||...+.
T Consensus 87 ~la~~l~~~~p~~-~~~~~~f~~sGseA~e~AlklAr~~tgr 127 (421)
T PRK06777 87 TLAERINALAPID-GPAKTAFFTTGAEAVENAVKIARAYTGR 127 (421)
T ss_pred HHHHHHHHhCCCC-CCceEEEeCCcHHHHHHHHHHHHHhhCC
Confidence 3445566655321 1233478889999999999999976443
No 97
>PLN02721 threonine aldolase
Probab=20.82 E-value=97 Score=24.76 Aligned_cols=30 Identities=7% Similarity=0.088 Sum_probs=20.6
Q ss_pred HHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 79 FFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 79 Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
-+++++|... + +++++|+.+++.++.+...
T Consensus 48 ~la~~~~~~~---~-~~~~~Gs~a~~~~l~~~~~ 77 (353)
T PLN02721 48 EMAKIFGKEA---A-LFVPSGTMGNLISVLVHCD 77 (353)
T ss_pred HHHHHhCCce---e-EEecCccHHHHHHHHHHcc
Confidence 3555556532 3 7888899999988776544
No 98
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=20.58 E-value=50 Score=28.43 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 76 KRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 76 vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
..+.|+++.+ |....-..|+.+||+||-.|+-.||..
T Consensus 90 l~~~l~~~~~-~~~~~~v~f~~sGsEAve~AlklAr~~ 126 (431)
T TIGR03251 90 FVDTFARVLG-DPALPHLFFIEGGALAVENALKTAFDW 126 (431)
T ss_pred HHHHHHHhcC-CCCcCEEEEeCCcHHHHHHHHHHHHHH
Confidence 3444555543 333334468899999999999999854
No 99
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=20.55 E-value=72 Score=27.71 Aligned_cols=40 Identities=3% Similarity=-0.065 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCCCC-CCCcccCCCCCcchhhhhcccccccc
Q psy866 75 YKRSFFVRMVSDPKIY-NPKIAVATPTSRRPTCLASSAEEDEE 116 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~-~G~i~tsGgs~anl~aL~~AR~~~~~ 116 (132)
...+-|++++ |... .-..|+.+||+||..|+-.||...+.
T Consensus 89 ~lae~L~~~~--p~~~~~~v~f~~SGseA~e~AiklAr~~tgr 129 (445)
T PRK08593 89 RLAKKLCELA--PGDFEKRVTFGLSGSDANDGIIKFARAYTGR 129 (445)
T ss_pred HHHHHHHHhC--CCCCCCEEEECCchHHHHHHHHHHHHHhhCC
Confidence 3444555554 3322 23468889999999999999976543
No 100
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=20.47 E-value=90 Score=27.05 Aligned_cols=36 Identities=6% Similarity=0.050 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 76 KRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 76 vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
..+-|++++ |....-..|+.+||.||-.|+-.||..
T Consensus 92 lae~L~~~~--p~~~~~v~f~~sGseAve~AlklAr~~ 127 (429)
T PRK06173 92 LAQKLLEIL--PPSLNKIFFADSGSVAVEVAMKMALQY 127 (429)
T ss_pred HHHHHHhhC--CCCcCEEEEeCCchHHHHHHHHHHHHH
Confidence 334444444 433444578889999999999999964
No 101
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=20.42 E-value=73 Score=28.38 Aligned_cols=37 Identities=5% Similarity=-0.081 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
...+-|++++. |....-..|+++|++||..|+-+||.
T Consensus 137 ~lae~L~~~~~-~~~~~~v~f~~SGsEA~e~AlKlAr~ 173 (504)
T PLN02760 137 DLAKELLEMFT-ARKMGKVFFTNSGSEANDTQVKLVWY 173 (504)
T ss_pred HHHHHHHhhcC-CCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 33344444432 22233336788999999999999984
No 102
>PRK06917 hypothetical protein; Provisional
Probab=20.33 E-value=73 Score=27.72 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhcccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAE 112 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~ 112 (132)
...+-|++++ |....-..|+++||+|+-.|+-.||.
T Consensus 78 ~lae~L~~~~--p~~~~~v~f~~sGsEAve~AlklAr~ 113 (447)
T PRK06917 78 KLAKKLSDLS--PGDLNWSFFVNSGSEANETAMKIAIQ 113 (447)
T ss_pred HHHHHHHHhC--CCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 4555666665 32222336788999999999999864
No 103
>PRK11715 inner membrane protein; Provisional
Probab=20.27 E-value=47 Score=29.57 Aligned_cols=32 Identities=19% Similarity=0.547 Sum_probs=20.3
Q ss_pred CCCCCCCCcee-eCCCCCCH--HHHHHHHHHHHhc
Q psy866 23 VTHWQHPRFHA-YFPSGNSY--PSVLADMLSDAIG 54 (132)
Q Consensus 23 ~~~~~hPrf~a-~~ps~~s~--~s~lgD~L~saln 54 (132)
...|.||.|.| |.|..... .+.=|+|=++.+|
T Consensus 232 ~S~WphPSF~G~fLP~~R~It~~GF~A~W~is~l~ 266 (436)
T PRK11715 232 TSNWPHPSFVGDFLPAEREISESGFQAQWQVSHLA 266 (436)
T ss_pred EcCCcCCCCCCccCCCCCeeCCCCeeeEeechhhc
Confidence 46799999999 99987432 2334444444443
No 104
>PRK07480 putative aminotransferase; Validated
Probab=20.00 E-value=83 Score=27.51 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCcchhhhhccccc
Q psy866 75 YKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASSAEE 113 (132)
Q Consensus 75 ~vi~Wl~~~lGlP~~~~G~i~tsGgs~anl~aL~~AR~~ 113 (132)
.+.+-|++++ |....-..|+.+||+||-.|+-.||..
T Consensus 98 ~lae~L~~~~--p~~~~~v~f~~SGseA~e~AlklAr~~ 134 (456)
T PRK07480 98 ELAAKLAEVA--PPGFNHVFFTNSGSEANDTVLRMVRHY 134 (456)
T ss_pred HHHHHHHHhC--CCCcCEEEEeCCcHHHHHHHHHHHHHH
Confidence 4445556654 433344578889999999999999874
Done!