RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy866
         (132 letters)



>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 476

 Score = 54.1 bits (129), Expect = 4e-10
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 15  LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
           +   +   VTHW  P F AYFP+ +SYP++LADML  AIGCIGFSW
Sbjct: 60  VEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105


>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
           {Methanococcus maripaludis [TaxId: 39152]}
          Length = 434

 Score = 28.0 bits (61), Expect = 0.33
 Identities = 9/44 (20%), Positives = 9/44 (20%), Gaps = 5/44 (11%)

Query: 17  HFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSW 60
              S           H    SGN     L D    A G      
Sbjct: 75  RTYSKIHEELSSGFCHGIGRSGN-----LVDPQPKASGASIMYA 113


>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 212

 Score = 24.1 bits (52), Expect = 6.8
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 14  LLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLS 50
           +    L++ +  W   +  A F     Y   +  +L 
Sbjct: 173 VSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLE 209


>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
           domain {Fission yeast (Schizosaccharomyces pombe)
           [TaxId: 4896]}
          Length = 218

 Score = 23.9 bits (51), Expect = 7.2
 Identities = 5/15 (33%), Positives = 8/15 (53%)

Query: 60  WVFELQERKRKDDLA 74
           W    +   +KDD+A
Sbjct: 177 WNNGSRVEFKKDDMA 191


>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain
          {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 33

 Score = 21.9 bits (47), Expect = 7.7
 Identities = 5/15 (33%), Positives = 9/15 (60%), Gaps = 2/15 (13%)

Query: 18 FLSH--QVTHWQHPR 30
          F+ H  + T ++ PR
Sbjct: 19 FVDHNTRRTTFEDPR 33


>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 50

 Score = 22.4 bits (48), Expect = 8.6
 Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 18 FLSH--QVTHWQHPRFHAYFPSG 38
          F++H  + T W+ PR      +G
Sbjct: 28 FINHNIKKTQWEDPRMQNVAITG 50


>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic
           subunit {Thale cress (Arabidopsis thaliana), chloroplast
           [TaxId: 3702]}
          Length = 179

 Score = 23.4 bits (49), Expect = 9.2
 Identities = 8/68 (11%), Positives = 21/68 (30%)

Query: 11  LIILLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWVFELQERKRK 70
           ++ +             H              + + +  ++ +      W  EL  +K+K
Sbjct: 111 IVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQK 170

Query: 71  DDLAYKRS 78
             L++K  
Sbjct: 171 FPLSFKTF 178


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0454    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,303
Number of extensions: 20823
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 11
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)