BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8661
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4GXU6|RS4_CARGR 40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1
Length = 261
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 66/69 (95%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGGV+APRPSTGPHKLRESLPLVIFLRNRLKYALTN EV KI+MQRLIKVDGKVRT
Sbjct: 19 MLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRT 78
Query: 61 DTNYPAGFM 69
D NYP+GFM
Sbjct: 79 DPNYPSGFM 87
>sp|Q4PMB3|RS4_IXOSC 40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1
Length = 262
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/69 (89%), Positives = 64/69 (92%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGGVFAPRPSTGPHKLRESLPL+I LRNRLKYALT EV KI+ QRLIKVDGKVRT
Sbjct: 19 MLDKLGGVFAPRPSTGPHKLRESLPLIIMLRNRLKYALTGAEVKKIVKQRLIKVDGKVRT 78
Query: 61 DTNYPAGFM 69
DTNYPAGFM
Sbjct: 79 DTNYPAGFM 87
>sp|Q5UAP0|RS4_BOMMO 40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1
Length = 263
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 63/69 (91%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGGV+APRPSTGPHKLRE LPLVIFLRNRLKYALT EVLKI+ QRLIKVDGKVRT
Sbjct: 19 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DPTYPAGFM 87
>sp|Q95V34|RS4_SPOFR 40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2
SV=1
Length = 263
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 63/69 (91%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGGV+APRPSTGPHKLRE LPLVIFLRNRLKYALT EVLKI+ QRLIKVDGKVRT
Sbjct: 19 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DPTYPAGFM 87
>sp|Q56FH2|RS4_LYSTE 40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2
SV=1
Length = 262
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/69 (86%), Positives = 63/69 (91%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
ML KLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYALTN EV KI MQRLIKVDGKVRT
Sbjct: 19 MLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRT 78
Query: 61 DTNYPAGFM 69
D+NYP GFM
Sbjct: 79 DSNYPLGFM 87
>sp|P41042|RS4_DROME 40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2
SV=2
Length = 261
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 63/69 (91%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGGVFAPRPSTGPHKLRESLPL+IFLRNRLKYAL EV KI+MQRL+KVDGKVRT
Sbjct: 19 MLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAG+M
Sbjct: 79 DPTYPAGYM 87
>sp|Q90YS0|RS4_ICTPU 40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3
Length = 263
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IKVDGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKVDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X isoform OS=Monodelphis domestica
GN=RPS4X PE=2 SV=3
Length = 263
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
DT YP GFM
Sbjct: 79 DTTYPVGFM 87
>sp|Q6PBC4|RS4_XENTR 40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3
Length = 263
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|P49401|RS4_XENLA 40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4
Length = 263
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|O62739|RS4Y1_MONDO 40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica
GN=RPS4Y1 PE=2 SV=3
Length = 263
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|P47836|RS4_CHICK 40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2
Length = 263
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|P47961|RS4_CRIGR 40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2
Length = 263
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|P79103|RS4_BOVIN 40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3
Length = 263
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|P62703|RS4X_RAT 40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x
PE=2 SV=2
Length = 263
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|P62702|RS4X_MOUSE 40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2
SV=2
Length = 263
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|P62704|RS4X_MESAU 40S ribosomal protein S4, X isoform OS=Mesocricetus auratus
GN=RPS4X PE=2 SV=2
Length = 263
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|Q76MY1|RS4X_MACFU 40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata
GN=RPS4X PE=2 SV=3
Length = 263
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|P62701|RS4X_HUMAN 40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1
SV=2
Length = 263
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2
SV=2
Length = 263
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|Q76N24|RS4X_CHLAE 40S ribosomal protein S4, X isoform OS=Chlorocebus aethiops
GN=RPS4X PE=2 SV=3
Length = 263
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|P79183|RS4Y1_MACFU 40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata
GN=RPS4Y1 PE=2 SV=3
Length = 263
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVR
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRV 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DVTYPAGFM 87
>sp|Q642H9|RS4X_DANRE 40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2
SV=3
Length = 263
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRT
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
Query: 61 DTNYPAGFM 69
D YP GFM
Sbjct: 79 DITYPTGFM 87
>sp|P55832|RS4_HORSE 40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4
PE=2 SV=1
Length = 194
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/68 (83%), Positives = 59/68 (86%)
Query: 2 LDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTD 61
LDKL GVFAPRPSTGPHKLRE LPL+IFLRNRLKYALT EV KI MQR IK+DGKVRTD
Sbjct: 1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTD 60
Query: 62 TNYPAGFM 69
YPAGFM
Sbjct: 61 ITYPAGFM 68
>sp|Q861U8|RS4Y1_GORGO 40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla
GN=RPS4Y1 PE=3 SV=2
Length = 263
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL++FLRNRLKYALT EV KI MQR IK+DGKVR
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRV 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DVTYPAGFM 87
>sp|Q6GVM7|RS4Y2_PANTR 40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes
GN=RPS4Y2 PE=2 SV=3
Length = 263
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL++FLRNRLKYALT EV KI MQR IK+DGKVR
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRV 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|Q861U9|RS4Y1_PANTR 40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes
GN=RPS4Y1 PE=2 SV=2
Length = 263
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL++FLRNRLKYALT EV KI MQR IK+DGKVR
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRV 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DVTYPAGFM 87
>sp|Q861V0|RS4Y1_PANPA 40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1
PE=3 SV=2
Length = 263
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL++FLRNRLKYALT EV KI MQR IK+DGKVR
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRV 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DVTYPAGFM 87
>sp|P22090|RS4Y1_HUMAN 40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1
PE=1 SV=2
Length = 263
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL++FLRNRLKYALT EV KI MQR IK+DGKVR
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRV 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DVTYPAGFM 87
>sp|Q861U7|RS4Y1_PONPY 40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1
PE=3 SV=2
Length = 263
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL++FLRNRLKYALT EV KI MQR IK+DGKVR
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRV 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DITYPAGFM 87
>sp|P0CX36|RS4B_YEAST 40S ribosomal protein S4-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS4B PE=1 SV=1
Length = 261
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
+LDKL G +APRPS GPHKLRESLPL++FLRNRLKYAL +EV ILMQR +KVDGKVRT
Sbjct: 19 LLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRT 78
Query: 61 DTNYPAGFM 69
DT YPAGFM
Sbjct: 79 DTTYPAGFM 87
>sp|P0CX35|RS4A_YEAST 40S ribosomal protein S4-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS4A PE=1 SV=1
Length = 261
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
+LDKL G +APRPS GPHKLRESLPL++FLRNRLKYAL +EV ILMQR +KVDGKVRT
Sbjct: 19 LLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRT 78
Query: 61 DTNYPAGFM 69
DT YPAGFM
Sbjct: 79 DTTYPAGFM 87
>sp|P51405|RS4_DICDI 40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1
SV=3
Length = 267
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 61/69 (88%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL G +APRPS+GPHKLRE LPL++ LRNRLKYALT +EV ILMQRL+KVDGKVRT
Sbjct: 19 MLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRT 78
Query: 61 DTNYPAGFM 69
D NYPAGFM
Sbjct: 79 DPNYPAGFM 87
>sp|O59950|RS4_YARLI 40S ribosomal protein S4 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=RPS4 PE=2 SV=1
Length = 260
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL G +APR S GPHKLRESLPLVIFLRNRLKYAL +EV ILMQRL+KVDGKVRT
Sbjct: 19 MLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRT 78
Query: 61 DTNYPAGFM 69
D+ +PAGFM
Sbjct: 79 DSTFPAGFM 87
>sp|Q8TD47|RS4Y2_HUMAN 40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2
PE=2 SV=3
Length = 263
Score = 115 bits (287), Expect = 1e-25, Method: Composition-based stats.
Identities = 53/69 (76%), Positives = 58/69 (84%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKL GVFAPRPSTGPHKLRE LPL++FLRNRLKYALT EV KI MQ +K+DGKVR
Sbjct: 19 MLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRV 78
Query: 61 DTNYPAGFM 69
D YPAGF+
Sbjct: 79 DITYPAGFI 87
>sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2
SV=2
Length = 262
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGG FAP+PS+GPHK RE LPLV+ +RNRLKYALT +EV+ ILMQR I+VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DKTYPAGFM 87
>sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2
SV=4
Length = 262
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGG FAP+PS+GPHK RE LPLV+ +RNRLKYALT +EV+ ILMQR I+VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DKTYPAGFM 87
>sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2
SV=1
Length = 261
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 60/69 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGG FAP+PS+GPHK RE LPLV+ +RNRLKYALT +EV+ ILMQR I+VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DKTYPAGFM 87
>sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1
Length = 264
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGG FAP+PS+GPHK RE LPLVI +RNRLKYALT +EV+ ILMQR + VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DKTYPAGFM 87
>sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1
Length = 262
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYALT +EV+ ILMQR + VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DKTYPAGFM 87
>sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4
PE=2 SV=3
Length = 265
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGG FAP+PS+GPHK RE LPL++ +RNRLKYALT +EV+ ILMQR + VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DKTYPAGFM 87
>sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1
Length = 265
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 59/69 (85%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGG FAP+PS+GPHK RE LPL++ +RNRLKYALT +EV+ ILMQR + VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRT 78
Query: 61 DTNYPAGFM 69
D YPAGFM
Sbjct: 79 DKTYPAGFM 87
>sp|P87158|RS4A_SCHPO 40S ribosomal protein S4-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps4a PE=2 SV=2
Length = 262
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 58/69 (84%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
+LDKL G +AP+PS GPHK RE LPL++FLRNRLKYAL +EV ILMQRLIKVDGKVRT
Sbjct: 19 LLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRT 78
Query: 61 DTNYPAGFM 69
D+ +P GFM
Sbjct: 79 DSTFPTGFM 87
>sp|Q9P4W9|RS4C_SCHPO 40S ribosomal protein S4-C OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps4c PE=1 SV=1
Length = 262
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 58/69 (84%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
+LDKL G +AP+PS GPHK RE LPL++FLRNRLKYAL +EV ILMQRLIKVDGKVRT
Sbjct: 19 LLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRT 78
Query: 61 DTNYPAGFM 69
D+ +P GFM
Sbjct: 79 DSTFPTGFM 87
>sp|Q9USW5|RS4B_SCHPO 40S ribosomal protein S4-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps4b PE=1 SV=1
Length = 262
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 58/69 (84%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
+LDKL G +AP+PS GPHK RE LPL++FLRNRLKYAL +EV ILMQRLI+VDGKVRT
Sbjct: 19 LLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRT 78
Query: 61 DTNYPAGFM 69
D+ +P GFM
Sbjct: 79 DSTFPTGFM 87
>sp|Q9N3X2|RS4_CAEEL 40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1
SV=1
Length = 259
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 56/69 (81%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
MLDKLGGVFA RP+ GPHKLRESLPL +FLRNRLKYAL E KIL QR+++VDGKVRT
Sbjct: 18 MLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRT 77
Query: 61 DTNYPAGFM 69
+P GFM
Sbjct: 78 CHKFPTGFM 86
>sp|P47837|RS4_CANAX 40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1
Length = 262
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 55/69 (79%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRT 60
ML KL G +APRPS GPH LRESLPL +FLRNRL YAL +EV I+MQ+ ++V GKVRT
Sbjct: 19 MLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRT 78
Query: 61 DTNYPAGFM 69
DT YPAGFM
Sbjct: 79 DTTYPAGFM 87
>sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1
Length = 261
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/58 (74%), Positives = 50/58 (86%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKV 58
MLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYALT +EV+ ILMQR I VDGK+
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKI 76
>sp|P0C233|RS4_TETTH 40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1
Length = 259
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRL--IKVDGKV 58
ML+KLGG++A RPS GPHKLRESLPL + L+ RL YAL ++V IL + + VD KV
Sbjct: 18 MLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKV 77
Query: 59 RTDTNYPAGFM 69
R D YP G M
Sbjct: 78 RRDKGYPTGLM 88
>sp|A3MWZ7|RS4E_PYRCJ 30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rps4e PE=3 SV=1
Length = 237
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 44/66 (66%)
Query: 4 KLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTN 63
K GGV+A RPSTGPH L SLPL + +R+ L+YA T +E I+ + IKVDG VR D
Sbjct: 18 KAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYK 77
Query: 64 YPAGFM 69
+P G M
Sbjct: 78 FPIGLM 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.143 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,472,730
Number of Sequences: 539616
Number of extensions: 797332
Number of successful extensions: 2432
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2332
Number of HSP's gapped (non-prelim): 104
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)