Query psy8661
Match_columns 71
No_of_seqs 110 out of 268
Neff 4.5
Searched_HMMs 29240
Date Sat Aug 17 00:33:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_E RP5, S7, YS6, 40S ribos 100.0 6E-40 2.1E-44 240.4 5.0 70 1-70 19-88 (261)
2 2xzm_W 40S ribosomal protein S 100.0 2.5E-39 8.7E-44 236.9 5.8 70 1-70 19-90 (260)
3 3iz6_D 40S ribosomal protein S 100.0 6.6E-40 2.3E-44 240.5 2.6 70 1-70 19-88 (265)
4 3j20_E 30S ribosomal protein S 100.0 1.5E-38 5.2E-43 230.9 6.2 70 1-70 20-89 (243)
5 3kbg_A 30S ribosomal protein S 99.9 1.1E-27 3.7E-32 171.3 3.6 54 17-70 1-54 (213)
6 2cqj_A BRMS2, U3 small nucleol 97.7 2.8E-05 9.6E-10 46.2 3.1 35 33-67 16-50 (71)
7 1p9k_A ORF, hypothetical prote 97.4 3.6E-05 1.2E-09 45.6 0.9 42 24-66 21-62 (79)
8 3j20_D 30S ribosomal protein S 97.0 0.00041 1.4E-08 48.0 3.1 35 34-68 112-146 (180)
9 2xzm_D Ribosomal protein S4 co 96.9 0.00037 1.2E-08 48.1 2.3 35 33-67 115-149 (181)
10 3u5c_J 40S ribosomal protein S 96.9 0.00046 1.6E-08 48.6 2.7 35 33-67 115-149 (197)
11 1c05_A Ribosomal protein S4 de 96.8 0.0012 4.2E-08 44.0 4.1 41 26-67 53-93 (159)
12 3bbn_D Ribosomal protein S4; s 96.5 0.002 6.8E-08 45.1 3.2 34 34-67 98-131 (201)
13 2vqe_D 30S ribosomal protein S 96.4 0.0034 1.2E-07 43.7 4.1 33 34-66 108-140 (209)
14 3r8n_D 30S ribosomal protein S 96.1 0.003 1E-07 44.4 2.4 34 34-67 104-137 (205)
15 3iz6_C 40S ribosomal protein S 95.7 0.00045 1.5E-08 48.5 -3.0 34 34-67 118-151 (195)
16 1ksk_A Ribosomal small subunit 95.5 0.018 6.3E-07 39.3 4.5 42 23-66 3-44 (234)
17 1vio_A Ribosomal small subunit 95.4 0.019 6.6E-07 39.6 4.4 41 24-66 3-43 (243)
18 1dm9_A Hypothetical 15.5 KD pr 94.8 0.06 2E-06 34.8 5.1 43 22-66 7-49 (133)
19 3dh3_A Ribosomal large subunit 94.4 0.045 1.5E-06 39.5 4.2 42 22-66 5-46 (290)
20 2ktl_A Tyrosyl-tRNA synthetase 94.3 0.024 8.1E-07 38.8 2.4 44 25-69 51-94 (164)
21 1h3f_A Tyrosyl-tRNA synthetase 94.0 0.059 2E-06 41.0 4.4 43 23-66 368-410 (432)
22 2jan_A Tyrosyl-tRNA synthetase 93.8 0.08 2.7E-06 40.4 4.7 42 25-67 357-398 (432)
23 3hp7_A Hemolysin, putative; st 93.4 0.052 1.8E-06 39.2 3.0 41 25-66 8-50 (291)
24 2k6p_A Uncharacterized protein 93.2 0.01 3.4E-07 35.4 -0.9 37 28-66 5-41 (92)
25 1jil_A Tyrrs, tyrosyl-tRNA syn 92.6 0.022 7.5E-07 43.1 0.0 43 23-66 352-394 (420)
26 2ts1_A Tyrosyl-tRNA synthetase 90.2 0.054 1.8E-06 41.1 0.0 42 24-66 352-393 (419)
27 1v9f_A Ribosomal large subunit 89.3 0.07 2.4E-06 38.2 0.0 44 22-66 15-58 (325)
28 2x1d_A Acyl-coenzyme A\:6-amin 66.2 4 0.00014 28.7 2.7 28 22-50 177-204 (357)
29 2quy_A Penicillin acylase; aut 58.2 4.5 0.00015 28.8 1.8 30 21-50 97-126 (335)
30 1zv1_A Doublesex protein; UBA 57.8 2.6 9E-05 25.0 0.4 32 20-54 23-55 (65)
31 3hbc_A Choloylglycine hydrolas 50.4 8.3 0.00028 27.7 2.1 32 21-52 96-127 (320)
32 2oqc_A Penicillin V acylase; N 46.0 8.7 0.0003 27.4 1.6 31 20-50 94-124 (327)
33 3ktb_A Arsenical resistance op 45.6 21 0.00072 22.5 3.2 26 41-66 62-93 (106)
34 2bjf_A Choloylglycine hydrolas 42.9 9.2 0.00031 27.3 1.3 31 20-50 96-126 (329)
35 3gvz_A Uncharacterized protein 42.8 9.2 0.00031 27.2 1.3 29 20-48 103-131 (299)
36 2hf0_A BIle salt hydrolase; al 38.1 11 0.00039 26.7 1.2 30 21-50 96-125 (316)
37 2jz1_A Protein doublesex; sex 36.1 9.2 0.00031 23.5 0.4 32 20-54 23-55 (80)
38 2rmf_A Urocortin, HUCN1; CRF l 36.1 7.2 0.00025 21.1 -0.1 23 29-51 13-35 (40)
39 3u5c_Q RP61R, 40S ribosomal pr 33.4 22 0.00074 23.5 1.9 16 49-65 26-41 (143)
40 3hrd_D Nicotinate dehydrogenas 32.9 15 0.00052 24.4 1.1 43 22-68 21-68 (160)
41 3kgk_A Arsenical resistance op 25.2 35 0.0012 21.6 1.7 26 41-66 59-90 (110)
42 3j20_K 30S ribosomal protein S 24.3 40 0.0014 22.0 1.9 14 49-62 23-36 (135)
43 1whu_A Polynucleotide phosphor 23.8 29 0.001 20.8 1.1 26 38-63 78-103 (104)
44 1vq8_P 50S ribosomal protein L 23.4 66 0.0023 21.5 2.9 20 37-56 35-54 (149)
45 3iz6_I 40S ribosomal protein S 22.9 21 0.00072 23.7 0.4 16 49-65 32-47 (149)
46 3s7r_A Heterogeneous nuclear r 20.7 95 0.0033 16.5 2.9 21 39-59 62-82 (87)
47 3mkv_A Putative amidohydrolase 20.7 39 0.0013 21.3 1.3 11 51-61 403-413 (426)
48 3sop_A Neuronal-specific septi 20.1 26 0.0009 24.0 0.4 23 48-70 207-229 (270)
49 3r8n_I 30S ribosomal protein S 20.1 40 0.0014 21.8 1.3 14 49-62 22-35 (127)
No 1
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=100.00 E-value=6e-40 Score=240.35 Aligned_cols=70 Identities=77% Similarity=1.242 Sum_probs=69.5
Q ss_pred CccccccccccCCCCCCCCCccchhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCccccc
Q psy8661 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAGFMV 70 (71)
Q Consensus 1 ~l~K~~~~~a~~pspGPH~~~~slPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG~md 70 (71)
||+|++++|||+||||||+++|||||+|||||+|+||+|++||++||+|++|+||||||||++|||||||
T Consensus 19 ~l~kk~~~fa~rps~GPH~l~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MD 88 (261)
T 3u5c_E 19 LLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMD 88 (261)
T ss_dssp CCCSSSSSBCCCCCSSSSCGGGEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTC
T ss_pred ccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999
No 2
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=100.00 E-value=2.5e-39 Score=236.93 Aligned_cols=70 Identities=59% Similarity=1.002 Sum_probs=69.4
Q ss_pred CccccccccccCCCCCCCCCccchhHHHHHHhhhcccccHHHHHHHHHc--CceEeCCeEecCCcCCccccc
Q psy8661 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQ--RLIKVDGKVRTDTNYPAGFMV 70 (71)
Q Consensus 1 ~l~K~~~~~a~~pspGPH~~~~slPL~i~LRd~LkyA~t~~EakkIl~~--~~V~VdGkvrtD~~~pvG~md 70 (71)
||+|++++|||+||||||+++|||||+|||||+||||+|++||++||+| ++|+||||||+|++|||||||
T Consensus 19 ~l~kk~~~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MD 90 (260)
T 2xzm_W 19 MLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMD 90 (260)
T ss_dssp TCCSSSCSBCCCCCSSSSCSSSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTC
T ss_pred eeccccceEccCCCCCCCccceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEE
Confidence 7999999999999999999999999999999999999999999999999 999999999999999999999
No 3
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.6e-40 Score=240.54 Aligned_cols=70 Identities=73% Similarity=1.198 Sum_probs=45.9
Q ss_pred CccccccccccCCCCCCCCCccchhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCccccc
Q psy8661 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAGFMV 70 (71)
Q Consensus 1 ~l~K~~~~~a~~pspGPH~~~~slPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG~md 70 (71)
||+|++++|||+||||||+++|||||+|||||+|+||+|++||++||+|++|+||||||||++|||||||
T Consensus 19 ~l~kk~~~fa~rpspGPHkl~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MD 88 (265)
T 3iz6_D 19 MLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMD 88 (265)
T ss_dssp ------------------------CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTC
T ss_pred ccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999
No 4
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-38 Score=230.89 Aligned_cols=70 Identities=40% Similarity=0.690 Sum_probs=69.5
Q ss_pred CccccccccccCCCCCCCCCccchhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCccccc
Q psy8661 1 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAGFMV 70 (71)
Q Consensus 1 ~l~K~~~~~a~~pspGPH~~~~slPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG~md 70 (71)
||+|++++|||+||||||+++|||||+|||||+||||+|.+||++||+|++|+||||+|+|++|||||||
T Consensus 20 ~l~kk~~~~a~rps~GPH~~~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mD 89 (243)
T 3j20_E 20 YIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMD 89 (243)
T ss_dssp CCCTTSSSCBCCCCSCSSCSTTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTC
T ss_pred ccccccceeccCCCCCCCccccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccce
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=99.94 E-value=1.1e-27 Score=171.35 Aligned_cols=54 Identities=33% Similarity=0.546 Sum_probs=50.8
Q ss_pred CCCCccchhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCccccc
Q psy8661 17 PHKLRESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAGFMV 70 (71)
Q Consensus 17 PH~~~~slPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG~md 70 (71)
.|+++|||||++||||+||||+|.+||++||+||+|+||||+|+|++|||||||
T Consensus 1 ~Hkl~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mD 54 (213)
T 3kbg_A 1 MHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMD 54 (213)
T ss_dssp ---CCSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTC
T ss_pred CCcchhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCcccee
Confidence 399999999999999999999999999999999999999999999999999999
No 6
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=2.8e-05 Score=46.21 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=31.9
Q ss_pred hhcccccHHHHHHHHHcCceEeCCeEecCCcCCcc
Q psy8661 33 RLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAG 67 (71)
Q Consensus 33 ~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG 67 (71)
++++|.|.++|+..+++|.|.|||++++.+.|.|-
T Consensus 16 ~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~ 50 (71)
T 2cqj_A 16 KLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVT 50 (71)
T ss_dssp HTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEE
T ss_pred HhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCC
Confidence 37999999999999999999999999999987763
No 7
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=97.40 E-value=3.6e-05 Score=45.62 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=36.7
Q ss_pred hhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCc
Q psy8661 24 LPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPA 66 (71)
Q Consensus 24 lPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pv 66 (71)
+-|--+|.+. +++.+.+||++.+.+|.|.|||+++++..+.+
T Consensus 21 ~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v 62 (79)
T 1p9k_A 21 VELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKI 62 (79)
T ss_dssp CCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCC
T ss_pred chHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCC
Confidence 5677888875 88889999999999999999999998887765
No 8
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.01 E-value=0.00041 Score=48.04 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=32.2
Q ss_pred hcccccHHHHHHHHHcCceEeCCeEecCCcCCccc
Q psy8661 34 LKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAGF 68 (71)
Q Consensus 34 LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG~ 68 (71)
+++|.|..+|++.+.+|.|.|||++++++.|.|-.
T Consensus 112 ~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~ 146 (180)
T 3j20_D 112 KGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLK 146 (180)
T ss_dssp HTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCT
T ss_pred CcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCC
Confidence 68999999999999999999999999999887753
No 9
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=96.95 E-value=0.00037 Score=48.12 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.4
Q ss_pred hhcccccHHHHHHHHHcCceEeCCeEecCCcCCcc
Q psy8661 33 RLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAG 67 (71)
Q Consensus 33 ~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG 67 (71)
.+++|.|.++|+..+.+|.|.|||++++++.|.|-
T Consensus 115 ~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~ 149 (181)
T 2xzm_D 115 KLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVR 149 (181)
T ss_dssp HTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCC
T ss_pred hccccCCHHHHHHHHHCCEEEECCEEECCCCcCCC
Confidence 36899999999999999999999999999988874
No 10
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=96.92 E-value=0.00046 Score=48.57 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=32.1
Q ss_pred hhcccccHHHHHHHHHcCceEeCCeEecCCcCCcc
Q psy8661 33 RLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAG 67 (71)
Q Consensus 33 ~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG 67 (71)
++++|.|..+|++.+.+|.|.|||++++++.|-|-
T Consensus 115 r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~ 149 (197)
T 3u5c_J 115 KLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVR 149 (197)
T ss_dssp HSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCC
T ss_pred HccccCCHHHHHHHHHcCCEEECCEEeCCCccccC
Confidence 37899999999999999999999999999988764
No 11
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=96.83 E-value=0.0012 Score=44.04 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=32.9
Q ss_pred HHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCcc
Q psy8661 26 LVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAG 67 (71)
Q Consensus 26 L~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG 67 (71)
|--+|.. +++|.+.++|++++.+|.|.|||+++++..|.+-
T Consensus 53 LD~~L~~-~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~ 93 (159)
T 1c05_A 53 LDNLVYR-LGLARTRRQARQLVTHGHILVDGSRVNIPSYRVK 93 (159)
T ss_dssp HHHHHHH-TTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCC
T ss_pred HHHHHHH-cCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeC
Confidence 3334442 4678899999999999999999999988877653
No 12
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=96.45 E-value=0.002 Score=45.10 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=30.4
Q ss_pred hcccccHHHHHHHHHcCceEeCCeEecCCcCCcc
Q psy8661 34 LKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAG 67 (71)
Q Consensus 34 LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG 67 (71)
+++|.|..+|++.+.+|.|.|||+++++..|.+-
T Consensus 98 ~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~ 131 (201)
T 3bbn_D 98 LGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCK 131 (201)
T ss_dssp TTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCC
T ss_pred cCCcCCHHHHHHHHhCCcEEeCCEEEeecceecC
Confidence 4678899999999999999999999998887764
No 13
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=96.39 E-value=0.0034 Score=43.74 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=29.6
Q ss_pred hcccccHHHHHHHHHcCceEeCCeEecCCcCCc
Q psy8661 34 LKYALTNQEVLKILMQRLIKVDGKVRTDTNYPA 66 (71)
Q Consensus 34 LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pv 66 (71)
+++|.|.++|++++.+|.|.|||+++++..|.+
T Consensus 108 ~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V 140 (209)
T 2vqe_D 108 LGFAVSRRQARQLVRHGHITVNGRRVDLPSYRV 140 (209)
T ss_dssp TTSSSSHHHHHHHHHTTCEEETTEECCCTTCBC
T ss_pred hcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCc
Confidence 467889999999999999999999998877765
No 14
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=96.06 E-value=0.003 Score=44.41 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=30.3
Q ss_pred hcccccHHHHHHHHHcCceEeCCeEecCCcCCcc
Q psy8661 34 LKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAG 67 (71)
Q Consensus 34 LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG 67 (71)
+++|.|..+|++++.+|.|.|||+++++..|.+-
T Consensus 104 ~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk 137 (205)
T 3r8n_D 104 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS 137 (205)
T ss_dssp TSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCC
T ss_pred hcchhHHHHHHHHHHCCCEEECCEEEccCCcCcC
Confidence 5788999999999999999999999988877653
No 15
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.70 E-value=0.00045 Score=48.54 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=31.6
Q ss_pred hcccccHHHHHHHHHcCceEeCCeEecCCcCCcc
Q psy8661 34 LKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAG 67 (71)
Q Consensus 34 LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG 67 (71)
+++|.|..+|++++.+|.|.|||++++++.|.|-
T Consensus 118 ~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~ 151 (195)
T 3iz6_C 118 AGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVR 151 (195)
T ss_dssp CCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCS
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcC
Confidence 6899999999999999999999999999988774
No 16
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=95.49 E-value=0.018 Score=39.30 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=33.9
Q ss_pred chhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCc
Q psy8661 23 SLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPA 66 (71)
Q Consensus 23 slPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pv 66 (71)
++-|--||.... ..+.+++++++.+|.|+|||+++++..+.+
T Consensus 3 ~~RLd~~L~~~~--~~SR~~~~~li~~G~V~VNG~~v~~~~~~v 44 (234)
T 1ksk_A 3 HMRLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVRNAAFKL 44 (234)
T ss_dssp CEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEE
T ss_pred cccHHHHHHHcC--CCCHHHHHHHHHcCeEEECCEEeCCCCCCC
Confidence 455667787763 568899999999999999999998766655
No 17
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=95.42 E-value=0.019 Score=39.56 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=33.0
Q ss_pred hhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCc
Q psy8661 24 LPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPA 66 (71)
Q Consensus 24 lPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pv 66 (71)
+-|--||.+.. ..+.+++++.+.+|.|+|||+++++..+.+
T Consensus 3 ~RLd~~L~~~~--~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v 43 (243)
T 1vio_A 3 LRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQI 43 (243)
T ss_dssp EEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEE
T ss_pred ccHHHHHHHcC--CCCHHHHHHHHHcCcEEECCEEeCCCCCCc
Confidence 34666777763 578899999999999999999998766655
No 18
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=94.76 E-value=0.06 Score=34.80 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=33.4
Q ss_pred cchhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCc
Q psy8661 22 ESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPA 66 (71)
Q Consensus 22 ~slPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pv 66 (71)
+++-|--||.... +..+...|+++|.+|.|.|||+++ ...+.|
T Consensus 7 ~~~RLDk~L~~~~-~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V 49 (133)
T 1dm9_A 7 VEVRLDKWLWAAR-FYKTRALAREMIEGGKVHYNGQRS-KPSKIV 49 (133)
T ss_dssp TCCBHHHHHHHTT-SSSSHHHHHHHHHTTCEEETTEEC-CTTCBC
T ss_pred cchhHHHHHHHCC-CCCCHHHHHHHHHCCcEEECCEEc-CCCCEe
Confidence 4567778887642 345889999999999999999986 555655
No 19
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=94.39 E-value=0.045 Score=39.46 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=34.3
Q ss_pred cchhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCc
Q psy8661 22 ESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPA 66 (71)
Q Consensus 22 ~slPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pv 66 (71)
+++-|--||.+. +++ +.++|++++.+|.|.|||+++ +..+.+
T Consensus 5 ~g~RLdk~La~~-g~~-SR~~a~~lI~~G~V~VNG~~v-~~~~~V 46 (290)
T 3dh3_A 5 SSVRLNKYISES-GIC-SRREADRYIEQGNVFLNGKRA-TIGDQV 46 (290)
T ss_dssp CCEEHHHHHHTT-TSS-CHHHHHHHHHTTCEEETTEEC-CTTCEE
T ss_pred cchHHHHHHHhC-CCC-CHHHHHHHHHCCCEEECCEEc-cCCcCc
Confidence 456788888886 554 889999999999999999998 666654
No 20
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=94.30 E-value=0.024 Score=38.80 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=33.1
Q ss_pred hHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCcccc
Q psy8661 25 PLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAGFM 69 (71)
Q Consensus 25 PL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG~m 69 (71)
+++=+|- ..++|.+..||++.+.||-|+|||....|..-+.|+|
T Consensus 51 ~ivdlLv-~aGLa~SKsEARRlI~qGGv~VNg~kv~~~~~~~~i~ 94 (164)
T 2ktl_A 51 TFSKVLW-SAGLVASKSEGQRIINNNGAYVGSRPGVKKNEPGGGM 94 (164)
T ss_dssp SHHHHHH-HHTSCSTHHHHHHHHHHTCEEEEECCSCCCCCCCSSS
T ss_pred cHHHHHH-HhCcccCHHHHHHHHHhCCEEECCEeccccccccccc
Confidence 4554454 4699999999999999999999998876632344443
No 21
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.03 E-value=0.059 Score=40.97 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=36.9
Q ss_pred chhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCc
Q psy8661 23 SLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPA 66 (71)
Q Consensus 23 slPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pv 66 (71)
.++++=+|. ..+++.+..||++.+.||-|+|||..++|..+-+
T Consensus 368 ~~~~~~~l~-~~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~ 410 (432)
T 1h3f_A 368 RIWVARLFT-LAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQV 410 (432)
T ss_dssp EEEHHHHHH-HTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEE
T ss_pred cCcHHHHHH-HhCCcccHHHHHHHHHhCCEEECCEEecCcccee
Confidence 456666666 4699999999999999999999999999998754
No 22
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=93.76 E-value=0.08 Score=40.41 Aligned_cols=42 Identities=7% Similarity=0.063 Sum_probs=36.1
Q ss_pred hHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCcc
Q psy8661 25 PLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPAG 67 (71)
Q Consensus 25 PL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pvG 67 (71)
+++=+|. ..|+|.+..||++.+.||-|+|||..++|..+-+.
T Consensus 357 ~~~~ll~-~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~ 398 (432)
T 2jan_A 357 GIVDLLV-ASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQ 398 (432)
T ss_dssp SHHHHHH-HHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCC
T ss_pred hHHHHHH-HhCCcccHHHHHHHHHhCCEEECCEEccChhcccC
Confidence 4565665 47999999999999999999999999999987654
No 23
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=93.43 E-value=0.052 Score=39.16 Aligned_cols=41 Identities=7% Similarity=-0.093 Sum_probs=32.3
Q ss_pred hHHHHHHhhhcccccHHHHHHHHHcCceEeCC-e-EecCCcCCc
Q psy8661 25 PLVIFLRNRLKYALTNQEVLKILMQRLIKVDG-K-VRTDTNYPA 66 (71)
Q Consensus 25 PL~i~LRd~LkyA~t~~EakkIl~~~~V~VdG-k-vrtD~~~pv 66 (71)
-|-.+|-. .+++.+..+|++.+++|.|.||| + +.++..+.|
T Consensus 8 RLD~~L~~-~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V 50 (291)
T 3hp7_A 8 RVDVLAYK-QGLFETREQAKRGVMAGLVVNVINGERYDKPGEKI 50 (291)
T ss_dssp EHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEE
T ss_pred hHHHHHHH-cCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCC
Confidence 35556544 46888999999999999999999 8 777776554
No 24
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=93.22 E-value=0.01 Score=35.43 Aligned_cols=37 Identities=8% Similarity=0.087 Sum_probs=25.9
Q ss_pred HHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCc
Q psy8661 28 IFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPA 66 (71)
Q Consensus 28 i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pv 66 (71)
-||.. .+++.+...+++++.+|.|+|||+++ +..+.+
T Consensus 5 ~~L~~-~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v 41 (92)
T 2k6p_A 5 KFLQS-VGLVKRRVLATDMCNVGAVWLNGSCA-KASKEV 41 (92)
T ss_dssp HHSTT-TTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBC
T ss_pred HHHHH-CCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCc
Confidence 34444 23444555589999999999999987 555554
No 25
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=92.57 E-value=0.022 Score=43.08 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred chhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCc
Q psy8661 23 SLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPA 66 (71)
Q Consensus 23 slPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pv 66 (71)
.++|.=+|. ..++|.+..|||+.+.||-|+|||.+++|..+-+
T Consensus 352 ~i~l~~lL~-~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l 394 (420)
T 1jil_A 352 TTNIVEVLI-ETGISPSKRQAREDVNNGAIYINGERQQDVNYAL 394 (420)
T ss_dssp --------------------------------------------
T ss_pred cccHHHHHH-HcCCccCHHHHHHHHHhCCEEECCEEeccccccc
Confidence 345666665 4689999999999999999999999999987654
No 26
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=90.23 E-value=0.054 Score=41.11 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCc
Q psy8661 24 LPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPA 66 (71)
Q Consensus 24 lPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pv 66 (71)
++++=+|. ..++|.+..||++.+.||-|+|||..++|..+-+
T Consensus 352 ~~~~~~l~-~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~ 393 (419)
T 2ts1_A 352 VPLVELLV-SAGISPSKRQAREDIQNGAIYVNGERLQDVGAIL 393 (419)
T ss_dssp -------------------------------------------
T ss_pred ccHHHHHH-HhCCCCCHHHHHHHHHhCCEEECCEEecCccccc
Confidence 45555555 4699999999999999999999999999987754
No 27
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=89.30 E-value=0.07 Score=38.25 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred cchhHHHHHHhhhcccccHHHHHHHHHcCceEeCCeEecCCcCCc
Q psy8661 22 ESLPLVIFLRNRLKYALTNQEVLKILMQRLIKVDGKVRTDTNYPA 66 (71)
Q Consensus 22 ~slPL~i~LRd~LkyA~t~~EakkIl~~~~V~VdGkvrtD~~~pv 66 (71)
+++-|--||...+ ...+.+++++++.+|.|+|||+++++..+.+
T Consensus 15 ~g~RLd~~L~~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v 58 (325)
T 1v9f_A 15 LGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 58 (325)
T ss_dssp ---------------------------------------------
T ss_pred CCchHHHHHHhhc-cccCHHHHHHHHHCCCEEECCEEccCCCCEe
Confidence 3456777777654 2457789999999999999999866665554
No 28
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=66.22 E-value=4 Score=28.68 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=26.0
Q ss_pred cchhHHHHHHhhhcccccHHHHHHHHHcC
Q psy8661 22 ESLPLVIFLRNRLKYALTNQEVLKILMQR 50 (71)
Q Consensus 22 ~slPL~i~LRd~LkyA~t~~EakkIl~~~ 50 (71)
..+|...++|..|. +.|.+||..+|.+-
T Consensus 177 ~g~~~~~~~r~vL~-~~tv~eav~~l~~~ 204 (357)
T 2x1d_A 177 TGVPSHIALRIALE-STSPSQAYDRIVEQ 204 (357)
T ss_dssp TSBCHHHHHHHHHT-CSSHHHHHHHHHHT
T ss_pred CCccHhHHHHHHhc-CCCHHHHHHHHHHh
Confidence 57999999999999 99999999999865
No 29
>2quy_A Penicillin acylase; autoproteolysis, NTN, OXY-anion HOLE, antibiotic resistance, hydrolase, zymogen; 1.70A {Bacillus sphaericus} PDB: 3pva_A 2iwm_A 3mji_A 2z71_A* 2pva_A
Probab=58.20 E-value=4.5 Score=28.85 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=27.4
Q ss_pred ccchhHHHHHHhhhcccccHHHHHHHHHcC
Q psy8661 21 RESLPLVIFLRNRLKYALTNQEVLKILMQR 50 (71)
Q Consensus 21 ~~slPL~i~LRd~LkyA~t~~EakkIl~~~ 50 (71)
..+++...|+|..|..+.|-+||+.+|.+-
T Consensus 97 ~~~l~~~~~~r~iL~~~~tV~EA~~~L~~~ 126 (335)
T 2quy_A 97 TRGINPVYVISQVLGNCVTVDDVIEKLTSY 126 (335)
T ss_dssp CEEECGGGHHHHHHHHCCSHHHHHHHHHTE
T ss_pred CCccCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 458999999999999999999999999873
No 30
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=57.75 E-value=2.6 Score=25.03 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=23.3
Q ss_pred CccchhHHHHHHhhhcccc-cHHHHHHHHHcCceEe
Q psy8661 20 LRESLPLVIFLRNRLKYAL-TNQEVLKILMQRLIKV 54 (71)
Q Consensus 20 ~~~slPL~i~LRd~LkyA~-t~~EakkIl~~~~V~V 54 (71)
.+|.+||..++ ||+|. +-+||.+-+.++.-.|
T Consensus 23 pWEmMpLMYVI---LK~A~~d~eeAsrrI~Eg~~~v 55 (65)
T 1zv1_A 23 PWELMPLMYVI---LKDADANIEEASRRIEEGQYVV 55 (65)
T ss_dssp CGGGHHHHHHH---HHHTTTCHHHHHHHHHHHHHHH
T ss_pred CHHHhHHHHHH---HhccCCCHHHHHHHHHHHHHHH
Confidence 36899998884 78896 7788887777665433
No 31
>3hbc_A Choloylglycine hydrolase; alpha-beta sandwich, structural genomics, PSI-2, protein STR initiative; HET: MSE; 2.27A {Bacteroides thetaiotaomicron}
Probab=50.37 E-value=8.3 Score=27.72 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=28.5
Q ss_pred ccchhHHHHHHhhhcccccHHHHHHHHHcCce
Q psy8661 21 RESLPLVIFLRNRLKYALTNQEVLKILMQRLI 52 (71)
Q Consensus 21 ~~slPL~i~LRd~LkyA~t~~EakkIl~~~~V 52 (71)
..+|+...|+|-.|..+.|-+||+++|.+..|
T Consensus 96 k~~l~~~~~~~~iL~~~~TV~Ea~~~L~~~~i 127 (320)
T 3hbc_A 96 RPAMGISIWTQYVLDNFATVREAVDEMKKETF 127 (320)
T ss_dssp SCEEETTTHHHHHHHHCSSHHHHHHHHTTCCS
T ss_pred CcccCHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence 45888889999999999999999999998755
No 32
>2oqc_A Penicillin V acylase; NTN-hydrolase, conjugated bIle acid HY choloylglycine hydrolase, hydrolase; 2.50A {Bacillus subtilis}
Probab=45.98 E-value=8.7 Score=27.36 Aligned_cols=31 Identities=10% Similarity=-0.051 Sum_probs=27.7
Q ss_pred CccchhHHHHHHhhhcccccHHHHHHHHHcC
Q psy8661 20 LRESLPLVIFLRNRLKYALTNQEVLKILMQR 50 (71)
Q Consensus 20 ~~~slPL~i~LRd~LkyA~t~~EakkIl~~~ 50 (71)
....|+...|+|-.|..+.|-+||+.+|.+-
T Consensus 94 ~~~~l~~~~~i~~iL~~~~tV~Ea~~~L~~~ 124 (327)
T 2oqc_A 94 DTVHIVPHEFVTWVLSVCQSLEDVKEKIRSL 124 (327)
T ss_dssp SSEEECGGGHHHHHHHHCCSHHHHHHHGGGE
T ss_pred CCCccCHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence 3558999999999999999999999999873
No 33
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=45.59 E-value=21 Score=22.48 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=21.1
Q ss_pred HHHHHHHHcC------ceEeCCeEecCCcCCc
Q psy8661 41 QEVLKILMQR------LIKVDGKVRTDTNYPA 66 (71)
Q Consensus 41 ~EakkIl~~~------~V~VdGkvrtD~~~pv 66 (71)
.+++++|.+. -+.|||++..--+||.
T Consensus 62 ~~V~~~L~~~G~~~LP~~~VDGevv~~G~yPt 93 (106)
T 3ktb_A 62 KTVNDFLQKHGADALPITLVDGEIAVSQTYPT 93 (106)
T ss_dssp HHHHHHHHTTCGGGCSEEEETTEEEECSSCCC
T ss_pred HHHHHHHHHcCcccCCEEEECCEEEEeccCCC
Confidence 4777788744 5899999999999984
No 34
>2bjf_A Choloylglycine hydrolase; amidohydrolase, NTN-hydrolase, bIle acids, BSH; HET: DXC; 1.67A {Clostridium perfringens} PDB: 2bjg_A 2rlc_A* 2rf8_A 2rg2_A
Probab=42.89 E-value=9.2 Score=27.27 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=27.7
Q ss_pred CccchhHHHHHHhhhcccccHHHHHHHHHcC
Q psy8661 20 LRESLPLVIFLRNRLKYALTNQEVLKILMQR 50 (71)
Q Consensus 20 ~~~slPL~i~LRd~LkyA~t~~EakkIl~~~ 50 (71)
....|+...|+|-.|..+.|-+||+.+|.+-
T Consensus 96 ~~~~l~~~~~~~~iL~~~~tV~Ea~~~l~~~ 126 (329)
T 2bjf_A 96 GKTNIPVYNFLLWVLANFSSVEEVKEALKNA 126 (329)
T ss_dssp TSEEEEGGGHHHHHHHHCSSHHHHHHHHTTE
T ss_pred CCCccCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3558999999999999999999999999873
No 35
>3gvz_A Uncharacterized protein CV2077; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum atcc 12472}
Probab=42.83 E-value=9.2 Score=27.24 Aligned_cols=29 Identities=21% Similarity=-0.017 Sum_probs=21.2
Q ss_pred CccchhHHHHHHhhhcccccHHHHHHHHH
Q psy8661 20 LRESLPLVIFLRNRLKYALTNQEVLKILM 48 (71)
Q Consensus 20 ~~~slPL~i~LRd~LkyA~t~~EakkIl~ 48 (71)
.+...|..+++|-.|..+.|.+||..+|.
T Consensus 103 ~~~g~p~~~~~r~iL~~~aTv~EAv~~L~ 131 (299)
T 3gvz_A 103 LRADSARHGVLTRLLRDYGSLDEVASAAD 131 (299)
T ss_dssp TC------CCHHHHHHHCCSHHHHHHTHH
T ss_pred ccCCCCHhHHHHHHHhcCCCHHHHHHHHH
Confidence 44566999999999999999999999998
No 36
>2hf0_A BIle salt hydrolase; alpha, beta; 2.30A {Bifidobacterium longum} PDB: 2hez_A
Probab=38.06 E-value=11 Score=26.68 Aligned_cols=30 Identities=17% Similarity=-0.006 Sum_probs=27.2
Q ss_pred ccchhHHHHHHhhhcccccHHHHHHHHHcC
Q psy8661 21 RESLPLVIFLRNRLKYALTNQEVLKILMQR 50 (71)
Q Consensus 21 ~~slPL~i~LRd~LkyA~t~~EakkIl~~~ 50 (71)
...|+...|+|-.|..+.|-+||+..|.+-
T Consensus 96 ~~~l~~~~~i~~vL~~~atV~Ea~~~L~~~ 125 (316)
T 2hf0_A 96 TENVATFEFPLWVARNFDSVDEVEETLRNV 125 (316)
T ss_dssp SEEEETTTHHHHHHHHCSSHHHHHHHHTTE
T ss_pred CCccCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 458999999999999999999999999873
No 37
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=36.14 E-value=9.2 Score=23.47 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=21.0
Q ss_pred CccchhHHHHHHhhhccc-ccHHHHHHHHHcCceEe
Q psy8661 20 LRESLPLVIFLRNRLKYA-LTNQEVLKILMQRLIKV 54 (71)
Q Consensus 20 ~~~slPL~i~LRd~LkyA-~t~~EakkIl~~~~V~V 54 (71)
.+|.+||..++ ||+| .+-+||-+-+.++...|
T Consensus 23 pWEMMpLMyVI---LK~a~~d~eeAsrrI~eg~~~v 55 (80)
T 2jz1_A 23 PWELMPLMYVI---LKDADANIEEASRRIEEGQYVV 55 (80)
T ss_dssp CGGGHHHHHHH---HHHTTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH---HhccCCCHHHHHHHHHHHHHHH
Confidence 36889998874 6788 45477766665554433
No 38
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=36.10 E-value=7.2 Score=21.13 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.2
Q ss_pred HHHhhhcccccHHHHHHHHHcCc
Q psy8661 29 FLRNRLKYALTNQEVLKILMQRL 51 (71)
Q Consensus 29 ~LRd~LkyA~t~~EakkIl~~~~ 51 (71)
+||+++..|...+++.+.-.++.
T Consensus 13 lLR~miemar~e~~~qqA~~NR~ 35 (40)
T 2rmf_A 13 LLRTLLELARTQSQRERAEQNRI 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 67999999999999887766654
No 39
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=33.44 E-value=22 Score=23.50 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=13.4
Q ss_pred cCceEeCCeEecCCcCC
Q psy8661 49 QRLIKVDGKVRTDTNYP 65 (71)
Q Consensus 49 ~~~V~VdGkvrtD~~~p 65 (71)
+|.|.|||++..++ ||
T Consensus 26 ~G~i~VNg~~l~~y-~~ 41 (143)
T 3u5c_Q 26 KGLIKVNGSPITLV-EP 41 (143)
T ss_dssp SCCEEETTEETTTC-SS
T ss_pred ceEEEECCCcHHHH-Ch
Confidence 57999999998877 55
No 40
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=32.91 E-value=15 Score=24.37 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=31.3
Q ss_pred cchhHHHHHHhhhcccccHHHHHHHHHcC-----ceEeCCeEecCCcCCccc
Q psy8661 22 ESLPLVIFLRNRLKYALTNQEVLKILMQR-----LIKVDGKVRTDTNYPAGF 68 (71)
Q Consensus 22 ~slPL~i~LRd~LkyA~t~~EakkIl~~~-----~V~VdGkvrtD~~~pvG~ 68 (71)
...+|+=+||+.|++--+ |.=|.+| -|.|||+++..-..|+.-
T Consensus 21 p~~tLLd~LR~~lgltgt----k~gC~~G~CGACtV~vdG~~v~sC~~~~~~ 68 (160)
T 3hrd_D 21 PNKRLLDLLREDFGLTSV----KEGCSEGECGACTVIFNGDPVTTCCMLAGQ 68 (160)
T ss_dssp SSSBHHHHHHTTSCCTTS----CCSSSSSSSCTTEEEETTEEEEGGGSBGGG
T ss_pred CCCCHHHHHHHhcCCCcc----ccccCCCCCCCCEEEECCEEEEchhhhhhh
Confidence 356899999998876333 2335555 799999998877777653
No 41
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=25.23 E-value=35 Score=21.61 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=20.8
Q ss_pred HHHHHHHHc-C-----ceEeCCeEecCCcCCc
Q psy8661 41 QEVLKILMQ-R-----LIKVDGKVRTDTNYPA 66 (71)
Q Consensus 41 ~EakkIl~~-~-----~V~VdGkvrtD~~~pv 66 (71)
.+++.+|.+ | -+.|||++..--+||.
T Consensus 59 ~~V~~~L~~~G~~~LP~~~VDGevv~~G~yPt 90 (110)
T 3kgk_A 59 EKVKAFIEASGAEGLPLLLLDGETVMAGRYPK 90 (110)
T ss_dssp HHHHHHHHHHCGGGCCEEEETTEEEEESSCCC
T ss_pred HHHHHHHHHcCcccCCEEEECCEEEEeccCCC
Confidence 367777775 4 6899999999999984
No 42
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.26 E-value=40 Score=22.01 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=11.8
Q ss_pred cCceEeCCeEecCC
Q psy8661 49 QRLIKVDGKVRTDT 62 (71)
Q Consensus 49 ~~~V~VdGkvrtD~ 62 (71)
+|.|.|||++..++
T Consensus 23 ~G~i~VNg~~l~~y 36 (135)
T 3j20_K 23 KGRVRINGKPVEII 36 (135)
T ss_dssp SCCEEETTEEGGGC
T ss_pred ceEEEECCeeHHHH
Confidence 57999999998655
No 43
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=23.78 E-value=29 Score=20.77 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHcCceEeCCeEecCCc
Q psy8661 38 LTNQEVLKILMQRLIKVDGKVRTDTN 63 (71)
Q Consensus 38 ~t~~EakkIl~~~~V~VdGkvrtD~~ 63 (71)
...+.++..+-+..+-+||+-.++++
T Consensus 78 lek~~vR~~IL~e~~RiDGR~~deIr 103 (104)
T 1whu_A 78 VAKEVFRSIILNEYKRCDGRDSGPSS 103 (104)
T ss_dssp HHHHHHHHHHTTSSCSCCCCCSSCSC
T ss_pred HHHHHHHHHHHCCCcCCCCCCccccc
Confidence 56778888999999999999887764
No 44
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Probab=23.40 E-value=66 Score=21.46 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.8
Q ss_pred cccHHHHHHHHHcCceEeCC
Q psy8661 37 ALTNQEVLKILMQRLIKVDG 56 (71)
Q Consensus 37 A~t~~EakkIl~~~~V~VdG 56 (71)
|.|.+++++.+.+|.|..--
T Consensus 35 A~sR~~IR~LIkdG~I~~kp 54 (149)
T 1vq8_P 35 AITREDVRELVDEGAIQAKD 54 (149)
T ss_dssp CCSHHHHHHHHHTTSEEECC
T ss_pred cccHHHHHHHHHCCCeEecc
Confidence 99999999999999988643
No 45
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.89 E-value=21 Score=23.74 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=13.2
Q ss_pred cCceEeCCeEecCCcCC
Q psy8661 49 QRLIKVDGKVRTDTNYP 65 (71)
Q Consensus 49 ~~~V~VdGkvrtD~~~p 65 (71)
+|.|.|||++..++ ||
T Consensus 32 ~G~i~VNg~~l~~y-~~ 47 (149)
T 3iz6_I 32 RGLIKVNGVPIELI-RP 47 (149)
T ss_dssp CCSSSEECCCCCCS-SC
T ss_pred cEEEEECCCcHHHH-Ch
Confidence 57999999998876 55
No 46
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=20.73 E-value=95 Score=16.55 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=16.0
Q ss_pred cHHHHHHHHHcCceEeCCeEe
Q psy8661 39 TNQEVLKILMQRLIKVDGKVR 59 (71)
Q Consensus 39 t~~EakkIl~~~~V~VdGkvr 59 (71)
+..+|.+.+....-.++|+..
T Consensus 62 ~~~~a~~A~~~~~~~~~g~~i 82 (87)
T 3s7r_A 62 DAASVEKVLDQKEHRLDGRVI 82 (87)
T ss_dssp STHHHHHHHHSSCEEETTEEE
T ss_pred CHHHHHHHHHhCCCEECCEEE
Confidence 567788888776677898875
No 47
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=20.68 E-value=39 Score=21.30 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=8.5
Q ss_pred ceEeCCeEecC
Q psy8661 51 LIKVDGKVRTD 61 (71)
Q Consensus 51 ~V~VdGkvrtD 61 (71)
.|.+|||+++|
T Consensus 403 ~Vi~~G~vv~~ 413 (426)
T 3mkv_A 403 LVMKDGRLFVN 413 (426)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCEEEEC
Confidence 57888888776
No 48
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=20.10 E-value=26 Score=23.97 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=18.1
Q ss_pred HcCceEeCCeEecCCcCCccccc
Q psy8661 48 MQRLIKVDGKVRTDTNYPAGFMV 70 (71)
Q Consensus 48 ~~~~V~VdGkvrtD~~~pvG~md 70 (71)
.+..+.+||+.+.=.+||-|+.+
T Consensus 207 s~~~~~~~g~~~~~r~y~wg~~~ 229 (270)
T 3sop_A 207 SDKEYQVNGKRVLGRKTPWGIIE 229 (270)
T ss_dssp CCCEEEETTEEEEEECCCC-CEE
T ss_pred cceEEEeCCcEEEEeecCceEEE
Confidence 44567899999989999999865
No 49
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=20.08 E-value=40 Score=21.81 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=11.8
Q ss_pred cCceEeCCeEecCC
Q psy8661 49 QRLIKVDGKVRTDT 62 (71)
Q Consensus 49 ~~~V~VdGkvrtD~ 62 (71)
+|.|.|||++..++
T Consensus 22 ~G~i~VNg~~l~~y 35 (127)
T 3r8n_I 22 NGKIVINQRSLEQY 35 (127)
T ss_dssp CSCEEETTBCSTTT
T ss_pred cEEEEECCEeHHHH
Confidence 57999999988765
Done!