RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8661
         (71 letters)



>d1gpja3 d.58.39.1 (A:1-143) Glutamyl tRNA-reductase catalytic,
           N-terminal domain {Archaeon Methanopyrus kandleri
           [TaxId: 2320]}
          Length = 143

 Score = 24.5 bits (53), Expect = 1.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 43  VLKILMQRLIKVDGKVRTDTN 63
            LKI+ +R I +  + R +T 
Sbjct: 122 ALKIVFRRAINLGKRAREETR 142


>d2q1ma1 b.22.1.1 (A:57-172) Glucocorticoid-induced TNF-related
          ligand, TNFSF18 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 23.0 bits (49), Expect = 3.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 39 TNQEVLKILMQRLIKVDGKVRTDTNY--PAGFMVR 71
           +   L+IL   L  + G+V  + NY   A F VR
Sbjct: 26 VSDWKLEILQNGLYLIYGQVAPNANYNDVAPFEVR 60


>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
           dehydratase reactivase alpha subunit {Klebsiella
           pneumoniae [TaxId: 573]}
          Length = 239

 Score = 22.0 bits (47), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 38  LTNQEVLKILMQRLIKVDGKV 58
           LT  E+  I +Q L+ VD  +
Sbjct: 155 LTGHEMSAIYIQDLLAVDTFI 175


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.143    0.413 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 253,253
Number of extensions: 8985
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 3
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)