RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8662
(260 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 163 bits (416), Expect = 4e-50
Identities = 62/112 (55%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 146 NKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA-YENRITPNMLCAGYPKGEKD 204
T V+GWG +GG D L EV VPI+SNAECK+ Y IT NMLCAG +G KD
Sbjct: 121 GTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEGGKD 180
Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
+CQGDSGGPL + +VG+VSWG GCA+ NYPGVY RV+ YL WI+
Sbjct: 181 ACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT 232
Score = 70.8 bits (174), Expect = 1e-14
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 87 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVH 130
IVGG + +PW L Y R +CG +LI+ +VLTAAHCV+
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVY 45
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 151 bits (383), Expect = 3e-45
Identities = 59/110 (53%), Positives = 71/110 (64%), Gaps = 3/110 (2%)
Query: 146 NKTGIVTGWGVQKQG-GSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEK 203
T V+GWG +G GS DTL EV VPI+SNA C++ IT NMLCAG +G K
Sbjct: 121 GTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGAITDNMLCAGGLEGGK 180
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
D+CQGDSGGPL + +VG+VSWG GCA+ PGVY RV+ YL WI
Sbjct: 181 DACQGDSGGPLVCNDGR-WVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 122 bits (309), Expect = 2e-34
Identities = 55/106 (51%), Positives = 68/106 (64%), Gaps = 7/106 (6%)
Query: 148 TGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQ 207
T V+GWG K G DTL EV VP++S C+ AY +T NM+CAG G KD+CQ
Sbjct: 120 TCTVSGWGNTKTLG-LPDTLQEVTVPVVSRETCRS-AYGGTVTDNMICAGA--GGKDACQ 175
Query: 208 GDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
GDSGGPL ++ + +G+VSWG GCA NYPGVY V+ YL WI
Sbjct: 176 GDSGGPLVCSDGEL---IGIVSWGYGCASGNYPGVYTPVSSYLDWI 218
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 69.5 bits (170), Expect = 1e-13
Identities = 39/115 (33%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 151 VTGWGVQKQG---GST--SDTLLEVEVPILSNAECKKTAYENRITPNM------LCAGYP 199
+GV S+ L EV V + + C + CAG P
Sbjct: 163 NGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCA-QYKGCANASDGATGLTGFCAGRP 221
Query: 200 KGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWI 253
KD+CQGDSGGP+ + E GVVSWG+G C PGVY V+ Y WI
Sbjct: 222 P--KDACQGDSGGPIFHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWI 274
Score = 41.0 bits (96), Expect = 4e-04
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 86 RIVGGQVTYVHQYPWMALLM-----YKKRFYCGATLINNLYVLTAAHCV 129
RI+GG +YP + L+ Y +CG + + YVLTAAHC
Sbjct: 32 RIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCA 80
>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism].
Length = 251
Score = 35.1 bits (81), Expect = 0.025
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 82 NKKTRIVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTAAHCVH 130
+ R QVT Q+P+ A++ ++ R ATLI VLTA HC++
Sbjct: 36 AEDDRT---QVTDTTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIY 84
>gnl|CDD|203605 pfam07262, DUF1436, Protein of unknown function (DUF1436). This
family consists of several hypothetical bacterial
proteins of around 160 residues in length. The function
of this family is unknown.
Length = 158
Score = 30.4 bits (69), Expect = 0.50
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 13/53 (24%)
Query: 100 WMALLM-----------YKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRG 141
W+ LM +K +CG +LINN+ + H H L W I
Sbjct: 80 WVKKLMEKYGYKTKRALFKNMKFCGISLINNIITIRPTH--HDKLEGWSAIGD 130
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 30.4 bits (68), Expect = 1.1
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 7 LDDVQHDEVPEVLDDGIS---VVPGPMPVAAPHGFQDYTSWFQELISGFVTNQEESTPPE 63
LDD + + +LDDG P PV P +Q+ + P +
Sbjct: 724 LDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQ 783
Query: 64 PVKP 67
PV P
Sbjct: 784 PVAP 787
>gnl|CDD|217716 pfam03761, DUF316, Domain of unknown function (DUF316). This
family of proteins with unknown function are from
Caenorhabditis elegans. The protein has GO references
indicating the protein is a positive regulator of growth
rate and is also involved in nematode larval
development.
Length = 280
Score = 29.7 bits (67), Expect = 1.4
Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 23/117 (19%)
Query: 77 TCG--AVNKKTRIVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVH 130
+CG + ++ + G +YPW+ ++ K + AT I+ ++LT++
Sbjct: 30 SCGNKTLPLPSQNINGIYLEKSEYPWLVKAAFQNGNQKNYKPPATFISTRHILTSSR--- 86
Query: 131 QGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGST-----SDTLLEVEVPILSNAECKK 182
+ + GK + K TG GG + L + ++ LS + K
Sbjct: 87 ------LFLNGKMLNWKN---TGDNDTCSGGLGHLEVPPEVLDKFDIMDLSKKKGKN 134
>gnl|CDD|238338 cd00604, IPT_CGTD, IPT domain (domain D) of cyclodextrin
glycosyltransferase (CGTase) and similar enzymes. These
enzymes are involved in the enzymatic hydrolysis of
alpha-1,4 linkages of starch polymers and belong to the
glycosyl hydrolase family 13. Most consist of three
domains (A,B,C) but CGTase is more complex and has two
additional domains (D,E). The function of the IPT/D
domain is unknown.
Length = 81
Score = 26.9 bits (60), Expect = 3.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 137 VTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVP 173
VTI G+ F + G V G + S SDT + VEVP
Sbjct: 17 VTISGEGFGSTGGTVYFGGTAAEVLSWSDTSIVVEVP 53
>gnl|CDD|219131 pfam06676, DUF1178, Protein of unknown function (DUF1178). This
family consists of several hypothetical bacterial
proteins of around 150 residues in length. The function
of this family is unknown.
Length = 145
Score = 27.5 bits (62), Expect = 3.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 13 DEVPEVLDDGISVVPGPMP 31
+E ++++GI V P P+P
Sbjct: 122 EEAKALIEEGIPVAPLPVP 140
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1025
Score = 28.6 bits (64), Expect = 4.0
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 17/83 (20%)
Query: 2 LSGEPLDDVQH-------DEVPEVLDDGIS---VVPGPMPVAAPHGFQDYTSWF------ 45
++G P + VQ DEV VL D ++ GP+P A FQ+ W
Sbjct: 247 MAGTPEEMVQRDFYFAIVDEVDSVLIDEARTPLIISGPVPNADNSKFQEIKPWIEQLVRA 306
Query: 46 -QELISGFVTNQEESTPPEPVKP 67
Q L++ ++T E++ +P
Sbjct: 307 QQNLVASYLTEAEKALKTKPNDF 329
>gnl|CDD|226241 COG3718, IolB, Uncharacterized enzyme involved in inositol
metabolism [Carbohydrate transport and metabolism].
Length = 270
Score = 27.3 bits (61), Expect = 8.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 8 DDVQHDEVPEVLDDGISVVP-GPMPVAAPHGFQDY 41
DD DE V + + +VP G PV APHG+ Y
Sbjct: 207 DDRSLDETMAVENGDVVLVPKGYHPVGAPHGYDSY 241
>gnl|CDD|224516 COG1600, COG1600, Uncharacterized Fe-S protein [Energy production
and conversion].
Length = 337
Score = 27.0 bits (60), Expect = 9.6
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 40 DYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCT 77
+Y SW + +T+ P P +P + + CG CT
Sbjct: 160 EYGSWVF--LGAVLTD----APLPPDRPEEEDHCGSCT 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.436
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,243,519
Number of extensions: 1198395
Number of successful extensions: 813
Number of sequences better than 10.0: 1
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 19
Length of query: 260
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 165
Effective length of database: 6,723,972
Effective search space: 1109455380
Effective search space used: 1109455380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)