RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8663
(161 letters)
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 75.0 bits (185), Expect = 3e-17
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVH 160
RIVGG + +PW L Y R +CG +LI+ +VLTAAHCV
Sbjct: 1 RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCVR 46
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 72.3 bits (178), Expect = 4e-16
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVH 160
IVGG + +PW L Y R +CG +LI+ +VLTAAHCV+
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVY 45
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 59.8 bits (145), Expect = 1e-11
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFY-CGATLINNLYVLTAAHCVH 160
IVGG +PW L + CG +LI+ +VLTAAHCV
Sbjct: 1 IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCVS 45
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 42.2 bits (99), Expect = 4e-05
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 116 RIVGGQVTYVHQYPWMALLM-----YKKRFYCGATLINNLYVLTAAHCV 159
RI+GG +YP + L+ Y +CG + + YVLTAAHC
Sbjct: 32 RIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCA 80
>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism].
Length = 251
Score = 37.4 bits (87), Expect = 0.002
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 112 NKKTRIVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTAAHCVH 160
+ R QVT Q+P+ A++ ++ R ATLI VLTA HC++
Sbjct: 36 AEDDRT---QVTDTTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIY 84
>gnl|CDD|226241 COG3718, IolB, Uncharacterized enzyme involved in inositol
metabolism [Carbohydrate transport and metabolism].
Length = 270
Score = 31.6 bits (72), Expect = 0.15
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 32 FERVPLDDVQHDEVPEVLDDGISVVP-GPMPVAAPHGFQDY 71
F+RV DD DE V + + +VP G PV APHG+ Y
Sbjct: 201 FQRVYTDDRSLDETMAVENGDVVLVPKGYHPVGAPHGYDSY 241
>gnl|CDD|236413 PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.
Length = 367
Score = 30.7 bits (70), Expect = 0.31
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 6 LQP--LDDVQHDEVPEVLDD-GISVVPGRFERVPLDDVQHDEVPEVLDDGISVVPG 58
L P LD Q D++ E L+D GIS+V V+ +E E+ +D +SV PG
Sbjct: 37 LIPFELDSDQIDDLYERLEDAGISIVDEEGNPSSAQVVEEEEEEELDND-LSVPPG 91
>gnl|CDD|217716 pfam03761, DUF316, Domain of unknown function (DUF316). This
family of proteins with unknown function are from
Caenorhabditis elegans. The protein has GO references
indicating the protein is a positive regulator of growth
rate and is also involved in nematode larval
development.
Length = 280
Score = 30.1 bits (68), Expect = 0.40
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 107 TCG--AVNKKTRIVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAH 157
+CG + ++ + G +YPW+ ++ K + AT I+ ++LT++
Sbjct: 30 SCGNKTLPLPSQNINGIYLEKSEYPWLVKAAFQNGNQKNYKPPATFISTRHILTSSR 86
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 28.5 bits (63), Expect = 1.6
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 37 LDDVQHDEVPEVLDDGIS---VVPGPMPVAAPHGFQDYTSWFQELISGFVTNQEESTPPE 93
LDD + + +LDDG P PV P +Q+ + P +
Sbjct: 724 LDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQ 783
Query: 94 PVKP 97
PV P
Sbjct: 784 PVAP 787
>gnl|CDD|218352 pfam04962, KduI, KduI/IolB family. This family includes the 5-keto
4-deoxyuronate isomerase enzyme EC:5.3.1.17 that is
involved in pectin degradation. This family aldo
includes bacterial Myo-inositol catabolism (IolB)
proteins. The Bacillus subtilis inositol operon
(iolABCDEFGHIJ) is involved in myo-inositol catabolism.
Glucose repression of the iol operon induced by inositol
is exerted through catabolite repression mediated by
CcpA and the iol induction system mediated by IolR. The
exact function of IolB is unknown. Members of this
family possess a Cupin like structure.
Length = 261
Score = 28.0 bits (63), Expect = 1.9
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 32 FERVPLDDVQHDEVPEVLDDGISVVP-GPMPVAAPHGFQDYTSWF 75
F+RV DD DE V D + +VP G PVAA G+ Y
Sbjct: 198 FQRVYTDDRSLDEAMAVEDGDVVLVPRGYHPVAAAPGYDMYYLNV 242
>gnl|CDD|224466 COG1549, COG1549, Queuine tRNA-ribosyltransferases, contain PUA
domain [Translation, ribosomal structure and
biogenesis].
Length = 519
Score = 28.2 bits (63), Expect = 2.0
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 26 SVVPGRFERVPLDDVQHDEVPEVLDD-----GISVVPGPMPVAAPHG 67
SV D +DEV V G +V+ G V A G
Sbjct: 463 SVFAPGVVDADEDIRPNDEVVVVHGGEVRGVGRAVMSGREMVEAKKG 509
>gnl|CDD|219131 pfam06676, DUF1178, Protein of unknown function (DUF1178). This
family consists of several hypothetical bacterial
proteins of around 150 residues in length. The function
of this family is unknown.
Length = 145
Score = 27.2 bits (61), Expect = 3.1
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 43 DEVPEVLDDGISVVPGPMP 61
+E ++++GI V P P+P
Sbjct: 122 EEAKALIEEGIPVAPLPVP 140
>gnl|CDD|153304 cd07620, BAR_SH3BP1, The Bin/Amphiphysin/Rvs (BAR) domain of
SH3-domain Binding Protein 1. BAR domains are
dimerization, lipid binding and curvature sensing
modules found in many different proteins with diverse
functions. SH3-domain binding protein 1 (SH3BP1 or
3BP-1) is a Rac GTPase activating protein that inhibits
Rac-mediated platelet-derived growth factor
(PDGF)-induced membrane ruffling. SH3BP1 contains an
N-terminal BAR domain followed by a GAP domain for Rho
and Rac GTPases and a C-terminal proline-rich domain.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions.
Length = 257
Score = 27.2 bits (60), Expect = 3.8
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 1 MEQSVLQPLDDVQHDEVPEVL 21
+E+ VLQPL+ + +++PE+L
Sbjct: 104 VEKDVLQPLNKLSEEDLPEIL 124
>gnl|CDD|224516 COG1600, COG1600, Uncharacterized Fe-S protein [Energy production
and conversion].
Length = 337
Score = 27.4 bits (61), Expect = 3.8
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 70 DYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCT 107
+Y SW + +T+ P P +P + + CG CT
Sbjct: 160 EYGSWVF--LGAVLTD----APLPPDRPEEEDHCGSCT 191
>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase. This family belongs
to the pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Cys-tRNA(Cys) is
produced by O-phosphoseryl-tRNA synthetase which
ligates O-phosphoserine (Sep) to tRNA(Cys), and
Sep-tRNA:Cys-tRNA synthase (SepCysS) converts
Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic
archaea. SepCysS forms a dimer, each monomer is
composed of a large and small domain; the larger, a
typical pyridoxal 5'-phosphate (PLP)-dependent-like
enzyme fold. In the active site of each monomer, PLP
is covalently bound to a conserved Lys residue near the
dimer interface.
Length = 361
Score = 27.4 bits (61), Expect = 4.2
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 23 DGISVVP---GRFERV---PLDDVQHDEVPEVLDDGISVVPGPMPVAAPHGFQ 69
DG SV GR + + P+ D HD + D V PG A G
Sbjct: 26 DGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPG-----AREGKF 73
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 26.6 bits (59), Expect = 6.1
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 30 GRFER--VPLDDVQHDEVP 46
GRF+ VP+ V DE P
Sbjct: 193 GRFDNEIVPVGGVTVDEGP 211
>gnl|CDD|150245 pfam09506, Salt_tol_Pase, Glucosylglycerol-phosphate phosphatase
(Salt_tol_Pase). Proteins in this family are
glucosylglycerol-phosphate phosphatases, with the gene
symbol stpA (Salt Tolerance Protein A). A motif
characteristic of acid phosphatases is found, but
otherwise this family shows little sequence similarity
to other phosphatases. This enzyme acts on the
glucosylglycerol phosphate, product of glucosylglycerol
phosphate synthase and immediate precursor of the
osmoprotectant glucosylglycerol.
Length = 381
Score = 26.8 bits (60), Expect = 6.4
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 30 GRFERVPLDDVQHDEV--PEVLD---DGISVVPGPMP--VAAPHGFQDYTSWFQEL 78
GR RV L D H EV P + D +GIS P+ V P G + Y +WF++L
Sbjct: 324 GRSNRVVLVDSSHGEVDRPSLKDGSLNGISDPEDPLKFDVLMPGGPKQYIAWFKQL 379
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.439
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,468,592
Number of extensions: 774783
Number of successful extensions: 611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 25
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)