RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8663
(161 letters)
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 98.2 bits (245), Expect = 8e-26
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 105 PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-----RFYCGATLINNLYVLTAAHCV 159
P CG + +I+ G T ++PW A++ YK +F CG +LINN Y++TAAHCV
Sbjct: 11 PNDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCV 70
Query: 160 H 160
Sbjct: 71 A 71
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 99.2 bits (247), Expect = 2e-25
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 86 QEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFY 141
+ K + L K CG R+ G + PWMALL Y++ RF
Sbjct: 89 CPSANIQHNSKVMSLFKDENFDCGNFLS-QRVSNGYEVKLSSRPWMALLRYQQFGESRFL 147
Query: 142 CGATLINNLYVLTAAHCVH 160
CG +I+ Y+LTAAHCVH
Sbjct: 148 CGGAMISERYILTAAHCVH 166
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 85.5 bits (212), Expect = 5e-21
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 99 DLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAA 156
LE RIV G + PW +L K + CGA+LI++ +VLTAA
Sbjct: 13 SLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAA 72
Query: 157 HCVHQ 161
HC+
Sbjct: 73 HCLLY 77
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 84.3 bits (209), Expect = 1e-20
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 96 KPVDLEKCGPCTCG--AVNKKTRIVGGQVTYVHQYPWMALLMYKKR-----FYCGATLIN 148
KP + CG + + +I+GG+ T + PW A + + R + CG +L++
Sbjct: 1 KPSSPPEELKFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMS 60
Query: 149 NLYVLTAAHCVH 160
+V++A HC
Sbjct: 61 PCWVISATHCFI 72
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 83.4 bits (206), Expect = 1e-19
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 100 LEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAH 157
LE RIV G + PW +L K + CGA+LI++ +VLTAAH
Sbjct: 149 LEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAH 208
Query: 158 CVHQ 161
C+
Sbjct: 209 CLLY 212
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 83.0 bits (205), Expect = 1e-19
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 85 NQEESTPPEPVKPVDLEKCGPCTCGAVNKK---TRIVGGQ-VTYVHQYPWMALLMYK--- 137
+ P P + P CG N++ +I G ++PWM ++
Sbjct: 95 PEGGVLPTPSPTPPVVPVLKPSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVI 154
Query: 138 -----KRFYCGATLINNLYVLTAAHCVH 160
++ CG +LI VLT AHCV+
Sbjct: 155 PGSGEEQLVCGGSLIAPSVVLTGAHCVN 182
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 79.9 bits (198), Expect = 3e-19
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
+VGG+ Q+PW +L K +CG +++N +++TAAHCV
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVET 45
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 80.4 bits (199), Expect = 4e-19
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 90 TPPEPVKPVDLEKCGPCTCGAVNKK-----TRIVGGQVTYVHQYPWMALLMYKKRFYCGA 144
+P + G CG +KK RI+GG + +PW+A + Y +C
Sbjct: 4 SPDLLATLPEPASPGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAG 62
Query: 145 TLINNLYVLTAAHCVH 160
+L++ +V++AAHC
Sbjct: 63 SLVHTCWVVSAAHCFS 78
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 81.3 bits (201), Expect = 5e-19
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 106 CTCGA-VNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
CG RIVGG+ T + ++PW L Y CG +L++ +VLTAAHC
Sbjct: 106 QDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFP 161
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 79.8 bits (197), Expect = 1e-18
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 99 DLEKCGPCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLT 154
+L KC P CG +K RI+GG + +PW + G LIN +VLT
Sbjct: 62 ELPKCVPV-CGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLT 117
Query: 155 AAHCVHQ 161
AAH V
Sbjct: 118 AAHVVEG 124
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 77.6 bits (192), Expect = 2e-18
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
IVGG +PW+ L Y R CGA+L+++ ++++AAHCV+
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVY 44
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 79.4 bits (196), Expect = 2e-18
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 99 DLEKCGP---CTCG--AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVL 153
EK P CG A +I GGQ +PW L++ L+ + +VL
Sbjct: 139 KGEKSLPVCEPVCGLSARTTGGQIYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVL 196
Query: 154 TAAHCVHQ 161
TAAH V++
Sbjct: 197 TAAHAVYE 204
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 77.7 bits (192), Expect = 3e-18
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
IVGG+V + PW LL+ CG TLIN ++V++AAHC +
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDK 45
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 79.6 bits (196), Expect = 3e-18
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 82 FVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFY 141
F+ ++ +D+ K CG + + + PW + K +
Sbjct: 194 FILQDTKALHQVFEHMLDVSKLTDTICG-----VGNMSANASDQERTPWHVTIKPKSQET 248
Query: 142 CGATLINNLYVLTAAHCVHQ 161
C LI++ +VLTAAHC
Sbjct: 249 CRGALISDQWVLTAAHCFRD 268
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 75.6 bits (187), Expect = 1e-17
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
IVGG + +P A L ++CG +LI+ ++LTAAHC+
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMD 44
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 75.7 bits (187), Expect = 1e-17
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
IVGG +P++ + +CG +L+N VLTAAHCV
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVS 44
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 75.7 bits (187), Expect = 1e-17
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLM-YKKRFYCGATLINNLYVLTAAHCVHQ 161
IVGGQ + PW ALL+ + +CG T+++ Y+LTAAHC++Q
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 77.2 bits (190), Expect = 2e-17
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 84 TNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK---KRF 140
+ + + L C K RIVGG + ++PW L +R
Sbjct: 355 SPTKILHGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRH 414
Query: 141 YCGATLINNLYVLTAAHCVH 160
CG ++I N ++LTAAHC +
Sbjct: 415 LCGGSIIGNQWILTAAHCFY 434
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 74.9 bits (185), Expect = 2e-17
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 115 TRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
V QV + PW + ++ CG L++ +VLTAAHC +
Sbjct: 2 APPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYN 47
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 74.9 bits (185), Expect = 2e-17
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
IVGG ++PW A L + CGATLIN ++++AAHC
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFT 44
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 74.1 bits (183), Expect = 4e-17
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
I+GG+ H P+MA + Y CG LI+ +VLTAAHC +
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQY 46
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 74.3 bits (183), Expect = 5e-17
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCVHQ 161
IV G + PW +L K + CGA+LI++ +VLTAAHC+
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLY 47
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 75.2 bits (185), Expect = 7e-17
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 99 DLEKCGPCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLT 154
+ +C P CG V ++ RI+GGQ + +PW R G L+ + ++LT
Sbjct: 69 KIPRCLPV-CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILT 125
Query: 155 AAHCVHQ 161
AAH ++
Sbjct: 126 AAHTLYP 132
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 73.8 bits (182), Expect = 8e-17
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCVH 160
IVGG +++PW + K +CG ++IN+ +V+ AAHC+
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQ 46
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 73.4 bits (181), Expect = 9e-17
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
++GG ++++ + F+C TLIN +VLTAAHC
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCD 43
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 75.3 bits (185), Expect = 9e-17
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 105 PCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
+CG ++ RIVGG+ + PW + CG I ++LTAAHC+
Sbjct: 306 KLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLR 365
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 73.4 bits (181), Expect = 1e-16
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
IVGG H PW A L + F CG L++ +VLTAAHC+
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI 43
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 73.0 bits (180), Expect = 1e-16
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
I+GG+ + + + PW ++ ++ +CG +++ +V+TAA CV
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVD 44
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 72.6 bits (179), Expect = 1e-16
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
IVGG+ V +YP+ L CGA++++N VLTAAHCV
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVD 44
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 73.1 bits (180), Expect = 1e-16
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
I GGQ +PW L++ L+ + +VLTAAH V++
Sbjct: 1 IYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYE 43
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 74.1 bits (182), Expect = 2e-16
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 94 PVKPVDLEKCGPCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINN 149
K + +C P CG V ++ +I+GGQ + +PW R G L+ +
Sbjct: 132 EQKGEKIPRCLPV-CGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGD 188
Query: 150 LYVLTAAHCVHQ 161
++LTAAH ++
Sbjct: 189 RWILTAAHTLYP 200
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 72.2 bits (178), Expect = 2e-16
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
+V G +P+ A L CG LI+ L+VLTAAHC
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCK 43
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 72.6 bits (179), Expect = 2e-16
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
I+GG+ H P+MA + CG L+ +VL+AAHC+
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 43
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 72.2 bits (178), Expect = 2e-16
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
+VGG ++P+M L CG L VLTAAHCV
Sbjct: 1 VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVS 40
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 72.2 bits (178), Expect = 2e-16
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
IVGG+ H +P+M L + +CGATLI +V++AAHCV
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVA 44
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 68.3 bits (168), Expect = 3e-16
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
I+GG+ + +PW + + F CG L+N +VLTAAHC
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCK 43
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 71.8 bits (177), Expect = 3e-16
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 117 IVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVH 160
I+ G Y +P+ A L +R +CG +LI+N ++LTAAHCVH
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVH 48
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 71.8 bits (177), Expect = 3e-16
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
I+ G+ H PW A L +R CG L+ + +VLTAAHC
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHC 42
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 72.3 bits (178), Expect = 3e-16
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQ 161
I G+ PW+A+L + + +CG +L+ + +++TAAHC+HQ
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQ 46
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 71.4 bits (176), Expect = 4e-16
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
I+ G +PW L+ + +CG L+N +VLTAAHC
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCK 43
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 71.4 bits (176), Expect = 4e-16
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
++GG ++++ ++AL+ Y CG TLIN +VLTA HC
Sbjct: 1 VIGGDECNINEHRFLALV-YANGSLCGGTLINQEWVLTARHCDR 43
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 71.5 bits (176), Expect = 5e-16
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMA-LLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
++ G++T PW LL KK+ CGA LI+ +VLTAAHC+ +
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDE 46
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 71.1 bits (175), Expect = 6e-16
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
IVGG + ++P+ +CGA++ N Y +TA HCV+
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVY 48
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 71.0 bits (175), Expect = 6e-16
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLM-YKKRFYCGATLINNLYVLTAAHCVHQ 161
IVGG + PW ALL+ + +CG T+++ Y+LTAAHC++Q
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 70.6 bits (174), Expect = 8e-16
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
I+ G+ H PW A L+ + +C L++ +VL+AAHC
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCF 43
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 70.0 bits (172), Expect = 2e-15
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
++GG ++PW + CGA+L+++ L+A+HCV
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVD 47
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 69.5 bits (171), Expect = 2e-15
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK--RFYCGATLINNLYVLTAAHCV 159
I+GG ++++ ++ L + +CG TLIN +VLTAAHC
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCD 45
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 69.5 bits (171), Expect = 2e-15
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
I+GG H PW + ++ F CG L++ +VLTAAHC+
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM 43
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 69.5 bits (171), Expect = 3e-15
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
I+GG+ H P+MA L CG L++ +VLTAAHC+ Q
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ 45
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 69.2 bits (170), Expect = 3e-15
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
IVGG + ++PW L K +R CG +LI + +VLTAAHC
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFD 47
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 68.8 bits (169), Expect = 5e-15
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
IVGG H PW L+ + R CG L++ +VLTAAHC+
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIR 44
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 68.8 bits (169), Expect = 5e-15
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
+VGG + PW + Y+K CG L++ +VLTAAHC
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCY 43
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 68.8 bits (169), Expect = 5e-15
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 103 CG-PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRF-YCGATLINNLYVLTAAHCVH 160
CG P ++ +RIV G+ +PW L K F +CG +LIN +V+TAAHC
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV 60
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 68.3 bits (168), Expect = 6e-15
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
IVGG+ Q+P++A + + R +CG LI+ +V+TAA C
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQ 44
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 68.4 bits (168), Expect = 6e-15
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
I+GG H P+M LL ++ C LI +VLTAAHC
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCN 43
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 68.4 bits (168), Expect = 6e-15
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK--RFYCGATLINNLYVLTAAHCV 159
+VGG ++++P++ L +C LIN +VLTAAHC
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCD 45
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 68.3 bits (168), Expect = 7e-15
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCV 159
I+ G +H PW A L+ + + YCGA L++ ++LTAAHC
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCR 44
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 69.0 bits (169), Expect = 7e-15
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 99 DLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAH 157
D ++C P + + PW L + + +CG +I +VLT A
Sbjct: 37 DHKQCVPHDQC--ACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAK 94
Query: 158 CVHQ 161
C
Sbjct: 95 CSLL 98
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 68.4 bits (168), Expect = 7e-15
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
I+GG + +PW+A + Y +C +L++ +V++AAHC
Sbjct: 1 IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFS 43
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 68.4 bits (168), Expect = 8e-15
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRF-YCGATLINNLYVLTAAHCVH 160
+VGG ++PW L + CGA+LI+ ++++AAHC
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYI 45
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 67.9 bits (167), Expect = 9e-15
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
IVGG + P L +CG +L+N +V++AAHC
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY 42
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 68.0 bits (167), Expect = 1e-14
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 103 CGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRF-YCGATLINNLYVLTAAHCVHQ 161
CG R+VGG V + H +PW L + +CG TLI+ +VLTAAHC+ +
Sbjct: 4 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 63
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 69.2 bits (169), Expect = 1e-14
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 101 EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMY----KKRFYCGATLINNLYVLTAA 156
E CG + T H+ PW A + K C +++ +VLTAA
Sbjct: 204 ESQSLSLCG-----MVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAA 258
Query: 157 HCVH 160
HC
Sbjct: 259 HCFT 262
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 67.5 bits (166), Expect = 1e-14
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
IVGG + P+ L +CG +LIN+ +V++AAHC
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK 43
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 67.7 bits (166), Expect = 1e-14
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
I+GGQ + +PW G L+ + ++LTAAH ++
Sbjct: 1 IIGGQKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYP 43
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 68.2 bits (167), Expect = 2e-14
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 102 KCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVH 160
+ + PW L + + +CG +I +VLT A C
Sbjct: 79 HKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSL 138
Query: 161 Q 161
Sbjct: 139 L 139
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 66.8 bits (164), Expect = 2e-14
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
IVGG + ++PW L +R CG ++I N ++LTAAHC +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 66.9 bits (164), Expect = 3e-14
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 117 IVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAHCVH 160
I GG + +PW A + K +RF CG LI++ ++L+AAHC
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQ 50
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 66.8 bits (164), Expect = 3e-14
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 108 CG----AVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 159
CG N R+VGG+ H +PW L Y + R CG TLI +VLTAAHC+
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
Query: 160 H 160
Sbjct: 61 S 61
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 66.1 bits (162), Expect = 6e-14
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-----FYCGATLINNLYVLTAAHCVH 160
I+GG+ T + PW A + + R + CG +LI+ +V++A HC
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFI 49
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 65.7 bits (161), Expect = 6e-14
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 119 GGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
GG+ T + Q PW + + CG +++ +VLTAAHCV
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVF 46
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 65.4 bits (160), Expect = 1e-13
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
I GG Q+PW + Y+ CG +L++ +VL+AAHC
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFP 44
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 62.6 bits (153), Expect = 2e-13
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCV 159
IV G+ +PW L K +CG +LIN +V+TAAHC
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCG 44
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 63.8 bits (156), Expect = 3e-13
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
IVGG + PW ++ + CG LI+ +V+TAAHC
Sbjct: 1 IVGGYKCEKNSQPWQVAVIN--EYLCGGVLIDPSWVITAAHCY 41
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 63.7 bits (156), Expect = 4e-13
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHCV 159
I+GG H P+MA LM K CG LI + +VLTAAHC
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCW 46
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 62.9 bits (154), Expect = 5e-13
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCV 159
I+GG+ + H P+MA L + + CG L+ +VLTAAHC
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW 46
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 62.6 bits (153), Expect = 7e-13
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR---FYCGATLINNLYVLTAAHCVH 160
IVGG H P+MA L + +CG TLI+ +VLTAAHC+
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLR 47
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 62.5 bits (153), Expect = 8e-13
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCV 159
I+GG H P+MA L++K K CG L+ +VLTAAHC+
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCL 46
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 62.5 bits (153), Expect = 9e-13
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 117 IVGGQVTYVHQYPWMALLMY----KKRFYCGATLINNLYVLTAAHCV 159
I+GG H P+MA L +CG LI +VLTAAHC
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCA 47
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 62.6 bits (153), Expect = 9e-13
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
+VGG+V + +PW L YK CG +LI +V+TAAHCV
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVD 48
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 62.1 bits (152), Expect = 1e-12
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 159
I+GG + H P+MA L R CG LI+ +VLTAAHC
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCK 47
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 62.8 bits (153), Expect = 1e-12
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 117 IVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAHCVH 160
I+GGQ +PWM L + CG +L+N+ ++LTAAHC
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFR 50
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 61.8 bits (151), Expect = 2e-12
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
+VGG + +P L Y+ CG TLI +V+TAAHCV
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD 48
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 61.4 bits (150), Expect = 2e-12
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 159
I+GG H P+MA + K + +CG L+ + +VLTAAHC
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCK 47
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 61.5 bits (150), Expect = 2e-12
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFY---CGATLINNLYVLTAAHCVH 160
IVGGQ ++PW L + R++ CG +LI+ +VLTAAHCV
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVG 47
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 61.1 bits (149), Expect = 4e-12
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
+VGG+ + +PW L Y R CG TL++ +VLTAAHC+
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCIS 48
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 60.7 bits (148), Expect = 4e-12
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
+V G T WM L Y+ + CG +LI +VLTA C
Sbjct: 1 VVNGIPT-RTNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFP 43
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 58.2 bits (140), Expect = 1e-10
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 106 CTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
CG + T H+ PW A + + C +++ +VLTAAHC
Sbjct: 451 SLCG-----MVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT 504
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 57.4 bits (138), Expect = 2e-10
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 94 PVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALL-MYKKRFYCGATLINNLYV 152
P CG R+VGG V + H +PW L +CG TLI+ +V
Sbjct: 539 PQCAAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWV 598
Query: 153 LTAAHCVH 160
LTAAHC+
Sbjct: 599 LTAAHCLE 606
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 54.9 bits (133), Expect = 5e-10
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 117 IVGGQVTYVHQYPWMA-LLMYKKRFYCGATLINNLYVLTAAHCVH 160
+VGG PW L + + +CG +L+ ++LTA C
Sbjct: 1 VVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFS 42
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 52.2 bits (126), Expect = 5e-09
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 120 GQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
G+ + + W L Y+K CG +LI +V+TA HC+
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS 46
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 43.8 bits (103), Expect = 5e-06
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 117 IVGG-----QVTYVHQYPWMALL-MYKKRFYCGATLINNLYVLTAAHCVH 160
+V G +V P+ ++ + C TLI +LT HCV+
Sbjct: 1 VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVY 50
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 40.1 bits (93), Expect = 9e-05
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 127 QYPWMA-----LLMYKKRFYCGATLINNLY---VLTAAHCVH 160
+ F C A ++ + V TA HC+H
Sbjct: 3 PADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLH 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.007
Identities = 16/124 (12%), Positives = 28/124 (22%), Gaps = 42/124 (33%)
Query: 9 LDDVQHDEVPEVLDDG---------ISVV----PGRFERVPLDDVQ----HDEVPEVLDD 51
L +VQ+ + + V + LD DEV +L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 52 GISVVPGPMPVAAPHG---------------------FQDYTSW-FQELISGFVTNQEES 89
+ P +P ++ +I + E
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-- 367
Query: 90 TPPE 93
P E
Sbjct: 368 -PAE 370
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 32.5 bits (73), Expect = 0.043
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 121 QVTYVHQYPW-----MALLMYKKRFYCGATLINNLYVLTAAHCVH 160
Q+T + + + F ++ +LT H V
Sbjct: 10 QITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVD 54
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 32.3 bits (73), Expect = 0.044
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 121 QVTYVHQYPW-----MALLMYKKRFYCGATLINNLYVLTAAHCVH 160
Q+T + + + F ++ +LT H V
Sbjct: 10 QITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVD 54
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 30.4 bits (67), Expect = 0.19
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 131 MALLMYKKRFYCGATLINNL------YVLTAAHCVH 160
+ C +L+NN Y LTA HC
Sbjct: 25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGM 60
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella
typhimurium LT2}
Length = 270
Score = 28.8 bits (64), Expect = 0.63
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 32 FERVPLDDVQHDEVPEVLDDGISVVP-GPMPVAAPHGFQDYTSWF 75
+RV DD DE V + + VP G PVA G+ +Y
Sbjct: 200 LQRVYTDDRSLDECMAVYNRDVVXVPXGYHPVATIAGYDNYYLNV 244
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 25.6 bits (56), Expect = 7.7
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 142 CGATLINNLYVLTAAHCV 159
+ Y LTA HC
Sbjct: 18 FNVRSGSTYYFLTAGHCT 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 25.6 bits (57), Expect = 8.4
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 5/27 (18%)
Query: 105 PCTCGAVNKKTRIVGGQVTYVHQYPWM 131
G V + G V YV Q W+
Sbjct: 56 DKVEGHVA-----IKGSVAYVPQQAWI 77
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate
ligase; nucleotide-binding, peptidoglycan synthesis,
MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium
tuberculosis} PDB: 2xja_A*
Length = 535
Score = 25.7 bits (57), Expect = 9.5
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 28 VPGRFERVPLDD 39
VPGR E++
Sbjct: 374 VPGRLEQIDRGQ 385
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.439
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,615,078
Number of extensions: 154643
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 105
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)