BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8666
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 76/92 (82%), Gaps = 1/92 (1%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 61 KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
K + D GVY C+ARN +G AVS +A+L+VA++
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEVAIL 110
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 1 MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
++VA EP + C+ G PEPTI W KDG S D K +R+ + G L
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDG-----SPLDDKDERITIRGGKLMITYT--- 172
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
++ D G Y C+ N VG S A L V F+
Sbjct: 173 -RKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV 207
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 128 bits (322), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+VV KNEP TLNCK EGKPEPTIEW+KDGE V T+ + KS RV G+LFF R + GK
Sbjct: 19 LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTN--EKKSHRVQFKDGALFFYRTMQGK 76
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
KEQDGG YWC+A+N VG AVSR+A+LQ+AV+
Sbjct: 77 KEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 3 VAKNEPVTLNC-KAEGKPEPTIEWYKDGELVETSKS---DAKSQRVILPTGSLFFLRVVH 58
VAK E L C +G PEPT+ W KDG ++ K+ A S+ I+ G+L V
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV-- 177
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ D G Y C+A+N VGT S A L V V
Sbjct: 178 --EPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 128 bits (322), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+VV KNEP TLNCK EGKPEPTIEW+KDGE V T+ + KS RV G+LFF R + GK
Sbjct: 19 LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTN--EKKSHRVQFKDGALFFYRTMQGK 76
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
KEQDGG YWC+A+N VG AVSR+A+LQ+AV+
Sbjct: 77 KEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 3 VAKNEPVTLNC-KAEGKPEPTIEWYKDGELVETSKS---DAKSQRVILPTGSLFFLRVVH 58
VAK E L C +G PEPT+ W KDG ++ K+ A S+ I+ G+L V
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV-- 177
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ D G Y C+A+N VGT S A L V V
Sbjct: 178 --EPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 73/89 (82%), Gaps = 1/89 (1%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 61 KEQ-DGGVYWCLARNSVGTAVSRNATLQV 88
K + D GVY C+ARN +G AVS +A+L+V
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 9 VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ-DGG 66
V LNC AE + P I+W KDG ++ D K Q LP GSL ++H + + D G
Sbjct: 39 VLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQ---LPNGSLLIQNILHSRHHKPDEG 95
Query: 67 VYWCLAR-NSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLYD 108
+Y C A G+ +SR A + VA + F+S ++A++ D
Sbjct: 96 LYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTE-SITAFMGD 137
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V L C+ G P PTI W K+ + + D S+ V+LP+G+L R+ G D GVY
Sbjct: 139 VLLKCEVIGDPMPTIHWQKNQQDLNPIPGD--SRVVVLPSGALQISRLQPG----DSGVY 192
Query: 69 WCLARNSVGTAVSRNATLQV 88
C ARN T A +++
Sbjct: 193 RCSARNPASTRTGNEAEVRI 212
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
+ C GKP PT+ W K+G++V S I+ +L L VV + D G Y
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSD-----YFQIVGGSNLRILGVV----KSDEGFY 380
Query: 69 WCLARNSVGTAVS 81
C+A N G A S
Sbjct: 381 QCVAENEAGNAQS 393
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
++ + + L C G P P+ W + E+++ +S++ L GS + V
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQL-----RSKKYSLLGGSNLLISNV--- 282
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
+ D G Y C+ +S +A L V V +F++
Sbjct: 283 TDDDSGTYTCVVTYK-NENISASAELTVLVPPWFLNH 318
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V L+C+ +G P+P I W +G V+ R + GSL + + K QD G Y
Sbjct: 25 VKLSCEVKGNPKPHIRWKLNGTDVDI----GMDFRYSVVDGSLL---INNPNKTQDAGTY 77
Query: 69 WCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
C+A NS GT VSR A LQ A + F + R +S
Sbjct: 78 QCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVS 112
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
VA E V CKA G+P+PT W K+G+ + T R+ + G+L V
Sbjct: 306 VAMEESVFWECKANGRPKPTYRWLKNGDPLLT------RDRIQIEQGTLNITIV----NL 355
Query: 63 QDGGVYWCLARNSVGTAVS 81
D G+Y C+A N G S
Sbjct: 356 SDAGMYQCVAENKHGVIFS 374
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
K V L C A G P PTI W + DG+ + KS ++ + +++
Sbjct: 218 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGIL----------EIPNFQQE 267
Query: 64 DGGVYWCLARNSVGTAVSR 82
D G Y C+A NS G V++
Sbjct: 268 DAGSYECVAENSRGKNVAK 286
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V L+C+ +G P+P I W +G V+ R + GSL + + K QD G Y
Sbjct: 26 VKLSCEVKGNPKPHIRWKLNGTDVDI----GMDFRYSVVDGSLL---INNPNKTQDAGTY 78
Query: 69 WCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
C+A NS GT VSR A LQ A + F + R +S
Sbjct: 79 QCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVS 113
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
VA E V CKA G+P+PT W K+G+ + T R+ + G+L V
Sbjct: 307 VAMEESVFWECKANGRPKPTYRWLKNGDPLLT------RDRIQIEQGTLNITIV----NL 356
Query: 63 QDGGVYWCLARNSVGTAVS 81
D G+Y C+A N G S
Sbjct: 357 SDAGMYQCVAENKHGVIFS 375
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
K V L C A G P PTI W + DG+ + KS ++ + +++
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGIL----------EIPNFQQE 268
Query: 64 DGGVYWCLARNSVGTAVSR 82
D G Y C+A NS G V++
Sbjct: 269 DAGSYECVAENSRGKNVAK 287
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V++ +PV LNC EG EP I+W KDG +V+ ++ +P ++ + K
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQ------NLDQLYIPVSEQHWIGFLSLK 65
Query: 61 --KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
+ D G YWC + T +S+ L V V FF
Sbjct: 66 SVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFF 101
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 1 MVVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ V N P L+C+A G PEP TI W++ + ++ P S L V
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRG------------TTKIGGPAPSPSVLNVTGV 155
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ + C A N G A SR AT+ +
Sbjct: 156 TQST---XFSCEAHNLKGLASSRTATVHL 181
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
VV + T+ C A G P+P I W+KD V+TS ++ + ++ L + S+ L++ +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQ--LRSESIGALQIEQ-SE 175
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
E D G Y C+A NS GT S A L V
Sbjct: 176 ESDQGKYECVATNSAGTRYSAPANLYV 202
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
C+A G P P I W K G+ V S+ + + + GS LR+ + +D +Y C+A
Sbjct: 28 CQATGDPRPKIVWNKKGKKV----SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83
Query: 73 RNSVG 77
N+VG
Sbjct: 84 SNNVG 88
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 11 LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
L C G P+P++ W K D L E S+ +L +GSL +H +++D G Y
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRI------AVLESGSLR----IHNVQKEDAGQYR 169
Query: 70 CLARNSVGTAVSRNATLQVAV 90
C+A+NS+GTA S+ L+V V
Sbjct: 170 CVAKNSLGTAYSKLVKLEVEV 190
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
E T C E P+P I W ++ L++ ++ I G L + V + D G
Sbjct: 23 EVATFMCAVESYPQPEISWTRNKILIKL----FDTRYSIRENGQLLTILSVE---DSDDG 75
Query: 67 VYWCLARNSVGTAVSRNATLQV 88
+Y C A N VG AV LQV
Sbjct: 76 IYCCTANNGVGGAVESCGALQV 97
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
C A G P P+I W K+G+ V ++S V+ G + LR+ + +D Y C+A
Sbjct: 30 CAARGDPPPSIVWRKNGKKVSGTQS---RYTVLEQPGGISILRIEPVRAGRDDAPYECVA 86
Query: 73 RNSVGTAVSRNATLQV 88
N VG AVS +ATL +
Sbjct: 87 ENGVGDAVSADATLTI 102
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V + CKA G P P I W K+ +K D + R L G FL++ +E+D G Y
Sbjct: 130 VLMTCKAIGNPTPNIYWIKN-----QTKVDMSNPRYSLKDG---FLQI-ENSREEDQGKY 180
Query: 69 WCLARNSVGTAVSRNATLQVAV 90
C+A NS+GT S+ L V V
Sbjct: 181 ECVAENSMGTEHSKATNLYVKV 202
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
VV K T+ C A G P+P I W+KD V+ + S+ + ++ L +G+L + +
Sbjct: 119 VVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQ--LRSGAL----QIESSE 172
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
E D G Y C+A NS GT S A L V V
Sbjct: 173 ESDQGKYECVATNSAGTRYSAPANLYVRV 201
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
C+A G+P+P I W K G+ V + + + + G+ LR+ + ++D +Y C A
Sbjct: 28 CQATGEPKPRITWMKKGKKVSSQRFEV----IEFDDGAGSVLRIQPLRVQRDEAIYECTA 83
Query: 73 RNSVGTAVSRNATLQV 88
NS+G ++ +A L V
Sbjct: 84 TNSLGE-INTSAKLSV 98
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
C A G P P+I W K+G+ V ++S V+ G + LR+ + +D Y C+A
Sbjct: 28 CAARGDPPPSIVWRKNGKKVSGTQS---RYTVLEQPGGISILRIEPVRAGRDDAPYECVA 84
Query: 73 RNSVGTAVSRNATLQV 88
N VG AVS +ATL +
Sbjct: 85 ENGVGDAVSADATLTI 100
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V + CKA G P P I W K+ +K D + R L G FL++ +E+D G Y
Sbjct: 128 VLMTCKAIGNPTPNIYWIKN-----QTKVDMSNPRYSLKDG---FLQI-ENSREEDQGKY 178
Query: 69 WCLARNSVGTAVSRNATLQVAV 90
C+A NS+GT S+ L V V
Sbjct: 179 ECVAENSMGTEHSKATNLYVKV 200
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
VV K T+ C A G P+P I W+KD V+ + S+ + ++ L +G+L + +
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQ--LRSGAL----QIESSE 173
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
E D G Y C+A NS GT S A L V
Sbjct: 174 ESDQGKYECVATNSAGTRYSAPANLYV 200
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
C+A G+P+P I W K G+ V + + + + G+ LR+ + ++D +Y C A
Sbjct: 29 CQATGEPKPRITWMKKGKKVSSQRFEV----IEFDDGAGSVLRIQPLRVQRDEAIYECTA 84
Query: 73 RNSVGTAVSRNATLQV 88
NS+G ++ +A L V
Sbjct: 85 TNSLGE-INTSAKLSV 99
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
VV + T+ C A G P+P I W+KD V+ S S+ + ++ L +G+L + +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ--LRSGAL----QIESSE 172
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
E D G Y C+A NS G S A L V V
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRV 201
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
C+A G P+P + W K G+ V + + + + + LR+ + +D VY C+A
Sbjct: 28 CQATGDPKPRVTWNKKGKKVNSQRFET----IEFDESAGAVLRIQPLRTPRDENVYECVA 83
Query: 73 RNSVG 77
+NSVG
Sbjct: 84 QNSVG 88
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V + C A G P P ++W + E + T + D +P G V+ +D Y
Sbjct: 223 VNITCVAVGSPMPYVKWMQGAEDL-TPEDD-------MPVGR----NVLELTDVKDSANY 270
Query: 69 WCLARNSVG 77
C+A +S+G
Sbjct: 271 TCVAMSSLG 279
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
VV + T+ C A G P+P I W+KD V+ S S+ + ++ L +G+L + +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ--LRSGAL----QIESSE 172
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
E D G Y C+A NS G S A L V V
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRV 201
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
C+A G P+P + W K G+ V + + + + + LR+ + +D VY C+A
Sbjct: 28 CQATGDPKPRVTWNKKGKKVNSQRFET----IEFDESAGAVLRIQPLRTPRDENVYECVA 83
Query: 73 RNSVG 77
+NSVG
Sbjct: 84 QNSVG 88
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
VV + T+ C A G P+P I W+KD V+ S S+ + ++ L +G+L + +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ--LRSGAL----QIESSE 172
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
E D G Y C+A NS G S A L V V
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRV 201
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
C+A G P+P + W K G+ V + + + + + LR+ + +D VY C+A
Sbjct: 28 CQATGDPKPRVTWNKKGKKVNSQRFET----IEFDESAGAVLRIQPLRTPRDENVYECVA 83
Query: 73 RNSVG 77
+NSVG
Sbjct: 84 QNSVG 88
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
VV + T+ C A G P+P I W+KD V+ S S+ + ++ L +G L + +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQ--LRSGGL----QIESSE 172
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
E D G Y C+A NS G S A L V V
Sbjct: 173 ETDQGKYECVASNSAGVRYSSPANLYVRV 201
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
C+A G P+P + W K G+ V + + + + + LR+ + +D +Y C+A
Sbjct: 28 CQATGDPKPRVTWNKKGKKVNSQRFET----IEFDESAGAVLRIQPLRTPRDENIYECVA 83
Query: 73 RNSVGTAVSRNATLQV 88
+N G V+ +A L V
Sbjct: 84 QNPHG-EVTVHAKLTV 98
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+V + + + C+A+G P P+ W ++ +K S R +G+L G+
Sbjct: 28 IVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRR--SGTLVIDFRSGGRP 85
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVA 89
E+ G Y C ARN GTA+S LQV+
Sbjct: 86 EEYEGEYQCFARNKFGTALSNRIRLQVS 113
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC 70
L C A G P P I WYK G + + K+ ++ LR+ + E+D G Y+C
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA--------LRITN-VSEEDSGEYFC 292
Query: 71 LARNSVGT 78
LA N +G+
Sbjct: 293 LASNKMGS 300
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQ 42
+++A E L C+A G P+PT++W +GE ++++ + +
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE 363
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
+ VTL C A+G PEPT+ W KDGE +E + D + + + S +R V E +
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDE-KHIFSDDSSELTIRNVDKNDEAE-- 268
Query: 67 VYWCLARNSVGTAVSRNATLQVAV 90
Y C+A N G ++A++ + V
Sbjct: 269 -YVCIAENKAG---EQDASIHLKV 288
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
E V L C+A P T W +G T R L G+L +++ K QD G
Sbjct: 22 EQVLLACRARASPPATYRWKMNG----TEMKLEPGSRHQLVGGNLV---IMNPTKAQDAG 74
Query: 67 VYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAY 105
VY CLA N VGT VSR A L+ + F R + A+
Sbjct: 75 VYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAH 113
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
C A GKP PT+ W ++GE + A RV + G L F ++ +D G+Y C+A
Sbjct: 315 CAAAGKPRPTVRWLRNGEPL------ASQNRVEVLAGDLRFSKL----SLEDSGMYQCVA 364
Query: 73 RNSVGT 78
N GT
Sbjct: 365 ENKHGT 370
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 14/70 (20%)
Query: 9 VTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
VTL C A G P P I+W K DG L + + + +P+ S +D G
Sbjct: 224 VTLECFAFGNPVPRIKWRKVDGSL--SPQWTTAEPTLQIPSVSF-----------EDEGT 270
Query: 68 YWCLARNSVG 77
Y C A NS G
Sbjct: 271 YECEAENSKG 280
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ E +T +C+A G PEP I W+++G+L+E ++++ IL GS L V
Sbjct: 15 TAERGEEMTFSCRASGSPEPAISWFRNGKLIE------ENEKYIL-KGSNTEL-TVRNII 66
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
DGG Y C A N G + A LQV V I
Sbjct: 67 NSDGGPYVCRATNKAGED-EKQAFLQVFVQPHIIQL 101
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYK--DG-ELVETSKS-DAKSQRVILPTGSLFFLRVVHGK 60
+N VTL C AEG+P P I W + DG E KS D + + S ++ V
Sbjct: 108 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV--- 164
Query: 61 KEQDGGVYWCLARNSVG 77
K D G Y C A + +G
Sbjct: 165 KLSDSGRYDCEAASRIG 181
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
+ E +T +C+A G PEP I W+++G+L+E ++++ IL GS L V D
Sbjct: 112 RGEEMTFSCRASGSPEPAISWFRNGKLIE------ENEKYIL-KGSNTEL-TVRNIINSD 163
Query: 65 GGVYWCLARNSVGTAVSRNATLQVAV 90
GG Y C A N G + A LQV V
Sbjct: 164 GGPYVCRATNKAGED-EKQAFLQVFV 188
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 11 LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGV 67
+ CKA G P P I W + DG T+ D R I G L F R ++E V
Sbjct: 30 IECKASGNPMPEIIWIRSDG----TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 85
Query: 68 YWCLARNSVGTAVSRNATLQVAVVIFF 94
Y CLARN G+ +SR+ ++ V ++
Sbjct: 86 YACLARNQFGSIISRDVHVRAVVAQYY 112
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
++L C A+G P P+ WYK E ++ + RV +G+L V +D G Y
Sbjct: 236 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV----VEDSGKY 291
Query: 69 WCLARNSVG 77
C+ NSVG
Sbjct: 292 LCVVNNSVG 300
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
P C+ G P T+ W KDG+ + S+S LR+ KKE D G+
Sbjct: 330 PAVFTCQYTGNPIKTVSWMKDGKAIGHSES---------------VLRIESVKKE-DKGM 373
Query: 68 YWCLARNSVGTA 79
Y C RN +A
Sbjct: 374 YQCFVRNDRESA 385
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG 65
++ VTL C A+G PEPT+ W KDGE +E + D + + GS ++ V + D
Sbjct: 28 SQSVTLACDADGFPEPTMTWTKDGEPIE--QEDNEEKYSFNYDGSELIIKKVD---KSDE 82
Query: 66 GVYWCLARNSVGTAVSRNATLQVAV 90
Y C+A N G ++AT+ + V
Sbjct: 83 AEYICIAENKAG---EQDATIHLKV 104
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 11 LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGV 67
+ CKA G P P I W + DG T+ D R I G L F R ++E V
Sbjct: 24 IECKASGNPMPEIIWIRSDG----TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 79
Query: 68 YWCLARNSVGTAVSRNATLQVAVVIFF 94
Y CLARN G+ +SR+ ++ V ++
Sbjct: 80 YACLARNQFGSIISRDVHVRAVVAQYY 106
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
++L C A+G P P+ WYK E ++ + RV +G+L V +D G Y
Sbjct: 230 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV----VEDSGKY 285
Query: 69 WCLARNSVG 77
C+ NSVG
Sbjct: 286 LCVVNNSVG 294
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
P C+ G P T+ W KDG+ + S+S LR+ KKE D G+
Sbjct: 324 PAVFTCQYTGNPIKTVSWMKDGKAIGHSES---------------VLRIESVKKE-DKGM 367
Query: 68 YWCLARNSVGTA 79
Y C RN +A
Sbjct: 368 YQCFVRNDRESA 379
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 11 LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGV 67
+ CKA G P P I W + DG T+ D R I G L F R ++E V
Sbjct: 59 IECKASGNPMPEIIWIRSDG----TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 114
Query: 68 YWCLARNSVGTAVSRNATLQVAVVIFF 94
Y CLARN G+ +SR+ ++ V ++
Sbjct: 115 YACLARNQFGSIISRDVHVRAVVAQYY 141
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRV--VHGKKEQDGG 66
V L C A G P P I W DG+ + + Q V + + +L + VH DGG
Sbjct: 447 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHA---NDGG 503
Query: 67 VYWCLARNSVGTA 79
+Y C+A++ VG A
Sbjct: 504 LYKCIAKSKVGVA 516
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
P C+ G P T+ W KDG+ + S+S LR+ KKE D G+
Sbjct: 360 PAVFTCQYTGNPIKTVSWMKDGKAIGHSES---------------VLRIESVKKE-DKGM 403
Query: 68 YWCLARNSVGTA 79
Y C RN +A
Sbjct: 404 YQCFVRNDRESA 415
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
+ L C A+G P P WYK E ++ + RV +G+L V +D G Y
Sbjct: 266 MALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV----VEDSGKY 321
Query: 69 WCLARNSVG 77
C+ NSVG
Sbjct: 322 LCVVNNSVG 330
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
+ E + + C G P +I W +D + ++ ++ + P G+L V ++
Sbjct: 538 IVAGETLIVTCPVAGYPIDSIVWERDNRALPINR-----KQKVFPNGTLIIENV---ERN 589
Query: 63 QDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
D Y C+A+N G + + +QV V+ I F
Sbjct: 590 SDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPF 624
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 4 AKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
A+ + CKA+G P+P + W K G+ K KS + + G+L V ++
Sbjct: 727 AQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLH----VDNIQK 782
Query: 63 QDGGVYWCLARNSVGTAVS 81
+ G Y C A N +G+ +S
Sbjct: 783 TNEGYYLCEAINGIGSGLS 801
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
+ E +T +C+A G PEP I W+++G+L+E ++++ IL GS L V D
Sbjct: 208 RGEEMTFSCRASGSPEPAISWFRNGKLIE------ENEKYIL-KGSNTEL-TVRNIINSD 259
Query: 65 GGVYWCLARNSVGTAVSRNATLQVAV 90
GG Y C A N G + A LQV V
Sbjct: 260 GGPYVCRATNKAGED-EKQAFLQVFV 284
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 11 LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
C A G+PE +I+WY GE + +QRV++ + ++ +D G+Y
Sbjct: 24 FTCTAIGEPE-SIDWYNPQGEKI------ISTQRVVVQKEGVRSRLTIYNANIEDAGIYR 76
Query: 70 CLARNSVGTAVSRNATLQV 88
C A ++ G L++
Sbjct: 77 CQATDAKGQTQEATVVLEI 95
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 11 LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGV 67
+ CKA G P P I W + DG T+ D R I G L F R ++E V
Sbjct: 24 IECKASGNPMPEIIWIRSDG----TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 79
Query: 68 YWCLARNSVGTAVSRNATLQVAVVIFFIS 96
Y CLARN G+ +SR+ ++ V+ + S
Sbjct: 80 YACLARNQFGSIISRDVHVRAVVIQSYES 108
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
P C+ G P T+ W KDG+ + S+S LR+ KKE D G+
Sbjct: 327 PAVFTCQYTGNPIKTVSWMKDGKAIGHSES---------------VLRIESVKKE-DKGM 370
Query: 68 YWCLARNSVGTA 79
Y C RN +A
Sbjct: 371 YQCFVRNDRESA 382
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
+L C A+ P P+ WYK E ++ + RV +G+L V +D G Y
Sbjct: 234 SLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV----VEDSGKYL 289
Query: 70 CLARNSVG 77
C+ NSVG
Sbjct: 290 CVVNNSVG 297
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
A EP+TL CK +G PE I WYK E + + A + SL +V H
Sbjct: 17 AAIGEPITLQCKVDGTPEIRIAWYK--EHTKLRSAPAYKMQFKNNVASLVINKVDHS--- 71
Query: 63 QDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFR 99
D G Y C A NSVG AV+ +A L + SF R
Sbjct: 72 -DVGEYTCKAENSVG-AVASSAVLVIKERKLPPSFAR 106
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
PV C+ G + WYKDGEL+ K DA Q + ++ L+++ + G
Sbjct: 118 PVAFECRINGSEPLQVSWYKDGELL---KDDANLQTSFI--HNVATLQILQTDQSHVGQ- 171
Query: 68 YWCLARNSVGTAVS 81
Y C A N +GTA S
Sbjct: 172 YNCSASNPLGTASS 185
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSK---SDAKSQRVILPTGSLFFLRVV 57
+V ++E CK G PE + WYKD E+ E+SK S +S V+ ++ L V
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL----EMYNLSV- 356
Query: 58 HGKKEQDGGVYWCLARN 74
+D G Y C A N
Sbjct: 357 -----EDSGDYTCEAHN 368
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYKDG-ELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
K V L C+ +G P + W+KD EL K S+ + S+ L V
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT---SIHILNV----DSA 450
Query: 64 DGGVYWCLARNSVGT 78
D G Y C A N VG+
Sbjct: 451 DIGEYQCKASNDVGS 465
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
+ E VTL C+A P T W +G T R L G L V K +
Sbjct: 20 SAEEKVTLTCRARANPPATYRWKMNG----TELKMGPDSRYRLVAGDLVISNPV---KAK 72
Query: 64 DGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
D G Y C+A N+ GT VSR A+L+ + F
Sbjct: 73 DAGSYQCVATNARGTVVSREASLRFGFLQEF 103
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 12 NCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL 71
+C A GKP P + W +DG+ + A R+ + G L F ++V +D G+Y C+
Sbjct: 315 SCVASGKPRPAVRWLRDGQPL------ASQNRIEVSGGELRFSKLVL----EDSGMYQCV 364
Query: 72 ARNSVGT 78
A N GT
Sbjct: 365 AENKHGT 371
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 9 VTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
VTL C A G P P I+W K DG +TSK L + L ++ V +D G
Sbjct: 225 VTLECFAFGNPVPQIKWRKLDGS--QTSK--------WLSSEPLLHIQNVDF---EDEGT 271
Query: 68 YWCLARNSVG 77
Y C A N G
Sbjct: 272 YECEAENIKG 281
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDG-ELVETSK----SDAKSQRVILPTGSLFFLRVVHGKK 61
E L+C+ G+P P I+WY+ G EL+++ K SD ++ + + T ++
Sbjct: 23 EAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMT-----------EE 71
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
++D GVY C+A N VG + + L A F +
Sbjct: 72 QEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGY 107
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
M V + V L + G P P +++Y+DG +++S SQ G L+ L +
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE-----GDLYSLLIAEAY 167
Query: 61 KEQDGGVYWCLARNSVGTAVS 81
E D G Y A NSVG A S
Sbjct: 168 PE-DSGTYSVNATNSVGRATS 187
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETS 35
+VV + T G P P + W++DG+++ TS
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS 49
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
M V + V L + G P P +++Y+DG +++S SQ G L+ L +
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE-----GDLYSLLIAEAY 167
Query: 61 KEQDGGVYWCLARNSVGTAVS 81
E D G Y A NSVG A S
Sbjct: 168 PE-DSGTYSVNATNSVGRATS 187
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETS 35
+VV + T G P P + W++DG+++ TS
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS 49
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
V + V C+A+G P P I W + + ++KS+ + + P G+L V +
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGR--LTVFPDGTL----EVRYAQV 450
Query: 63 QDGGVYWCLARNSVG 77
QD G Y C+A N+ G
Sbjct: 451 QDNGTYLCIAANAGG 465
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
PVT C+ G P+P I W+KDG+ + QR + T SL D G
Sbjct: 24 PVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH----TTASTLDDDGN 79
Query: 68 YWCLARNSVGTAVSRNATLQVAVV 91
Y +A N G VS L V V
Sbjct: 80 YTIMAANPQG-RVSCTGRLMVQAV 102
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
PVT C+ G P+P I W+KDG+ + QR + T SL D G
Sbjct: 25 PVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH----TTASTLDDDGN 80
Query: 68 YWCLARNSVGTAVSRNATLQVAVV 91
Y +A N G +S L V V
Sbjct: 81 YTIMAANPQG-RISCTGRLMVQAV 103
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 14 KAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLAR 73
KA G+P PT W KDG+ + + + L F +H D G+Y C +
Sbjct: 29 KATGEPRPTAIWTKDGKAI------TQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK 82
Query: 74 NSVGTAVSRNATLQVAVV 91
NS G +VS + L + +
Sbjct: 83 NSAG-SVSSSCKLTIKAI 99
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDGE-LVETSKSDAKSQRVILPTG--SLFFLRVVHGKKEQ 63
E + ++C A G P P I W+KD E LVE S ++L G +L RV +++
Sbjct: 26 ESIEVSCTASGNPPPQIMWFKDNETLVEDSG-------IVLKDGNRNLTIRRV----RKE 74
Query: 64 DGGVYWCLARNSVGTA 79
D G+Y C A + +G A
Sbjct: 75 DEGLYTCQACSVLGCA 90
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 11 LNC-KAEGKPEPTIEWYKDGELVETSKSDAK----SQRVILPT-GSLFFLRVVHGKKEQD 64
L C + +G P W+KDG ++ T+ + S V+ PT G L F + D
Sbjct: 127 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL----SASD 182
Query: 65 GGVYWCLARNSVGTAVSRNATLQVAV 90
G Y C ARN GT ++ NA AV
Sbjct: 183 TGEYSCEARNGYGTPMTSNAVRMEAV 208
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEW-YKDGELVETSKSDAK-----SQRVI-LPTGSLFFLR 55
+ +N PV L+C G P +EW + G+ + K RV LPTG + F
Sbjct: 16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG-ITFKS 74
Query: 56 VVHGKKEQDGGVYWCLARNSVGTA 79
V +D G Y C+ G +
Sbjct: 75 VTR----EDTGTYTCMVSEEGGNS 94
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDGE-LVETSKSDAKSQRVILPTG--SLFFLRVVHGKKEQ 63
E + ++C A G P P I W+KD E LVE S ++L G +L RV +++
Sbjct: 682 ESIEVSCTASGNPPPQIMWFKDNETLVEDSG-------IVLKDGNRNLTIRRV----RKE 730
Query: 64 DGGVYWCLARNSVGTA 79
D G+Y C A + +G A
Sbjct: 731 DEGLYTCQACSVLGCA 746
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDGELVETSKS 37
E V + K G P P I+WYK+G +E++ +
Sbjct: 346 ERVRIPAKYLGYPPPEIKWYKNGIPLESNHT 376
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
VA N P L+C+A+G PEP + W +D + T+ R +H
Sbjct: 117 TVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQ-------------RSLHVP 163
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ C A N+ G SR AT+ V
Sbjct: 164 GLNKTSSFSCEAHNAKGVTTSRTATITV 191
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 10 TLNCK--AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGS--------LFFLRVVHG 59
TL C+ +G+P P + W +DG+++E A S + +P G + LR+
Sbjct: 21 TLRCQLQVQGEP-PEVHWLRDGQILEL----ADSTQTQVPLGEDEQDDWIVVSQLRIT-S 74
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
+ D G Y CL T VS+ + + + +F+
Sbjct: 75 LQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFL 110
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
M V + E +C +G+P PT+ W + G+++ TS A+ Q S F + V
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS---ARHQVTTTKYKSTFEISSVQAS 80
Query: 61 KEQDGGVYWCLARNSVG 77
D G Y + NS G
Sbjct: 81 ---DEGNYSVVVENSEG 94
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
M V + E +C +G+P PT+ W + G+++ TS A+ Q S F + V
Sbjct: 18 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS---ARHQVTTTKYKSTFEISSVQAS 74
Query: 61 KEQDGGVYWCLARNSVG 77
D G Y + NS G
Sbjct: 75 ---DEGNYSVVVENSEG 88
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC 70
L+C A G P PTI W KDG LV T S K L G L + K D G Y C
Sbjct: 28 LSCVATGSPVPTILWRKDGVLVSTQDSRIKQ----LENGVLQ----IRYAKLGDTGRYTC 79
Query: 71 LARNSVGTA 79
+A G A
Sbjct: 80 IASTPSGEA 88
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
TL CK G P+P ++WY+ G+ + +D R+ G L ++ + D VY
Sbjct: 21 TLVCKVTGHPKPIVKWYRQGKEI---IADGLKYRIQEFKGGYHQL-IIASVTDDDATVYQ 76
Query: 70 CLARNSVGTAVSRNATLQVAV 90
A N G +VS A+L+V V
Sbjct: 77 VRATNQ-GGSVSGTASLEVEV 96
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
+ E V++ GKP+P I W K +L+ D ++ T S L +G + +D
Sbjct: 116 RGEVVSIKIPFSGKPDPVITWQKGQDLI-----DNNGHYQVIVTRSFTSLVFPNGVERKD 170
Query: 65 GGVYWCLARNSVG 77
G Y A+N G
Sbjct: 171 AGFYVVCAKNRFG 183
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169
Of Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
TL CK G P+P ++WY+ G+ + +D R+ G L ++ + D VY
Sbjct: 23 TLVCKVTGHPKPIVKWYRQGKEI---IADGLKYRIQEFKGGYHQL-IIASVTDDDATVYQ 78
Query: 70 CLARNSVGTAVSRNATLQVAV 90
A N G +VS A+L+V V
Sbjct: 79 VRATNQ-GGSVSGTASLEVEV 98
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
+ E V++ GKP+P I W K +L+ D ++ T S L +G + +D
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLI-----DNNGHYQVIVTRSFTSLVFPNGVERKD 172
Query: 65 GGVYWCLARNSVG 77
G Y A+N G
Sbjct: 173 AGFYVVCAKNRFG 185
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
TL CK G P+P ++WY+ G+ + +D R+ G L ++ + D VY
Sbjct: 23 TLVCKVTGHPKPIVKWYRQGKEI---IADGLKYRIQEFKGGYHQL-IIASVTDDDATVYQ 78
Query: 70 CLARNSVGTAVSRNATLQVAV 90
A N G +VS A+L+V V
Sbjct: 79 VRATNQ-GGSVSGTASLEVEV 98
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
+ E V++ GKP+P I W K +L+ D ++ T S L +G + +D
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLI-----DNNGHYQVIVTRSFTSLVFPNGVERKD 172
Query: 65 GGVYWCLARNSVG 77
G Y A+N G
Sbjct: 173 AGFYVVCAKNRFG 185
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL--------PTGSLFF 53
V N V + +G P W+KDG + +DAK R + +G L F
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDG--ISMLTADAKKTRAFMNSSFTIDPKSGDLIF 173
Query: 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
V D G Y+C A+N GTA+ A AV
Sbjct: 174 DPVT----AFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTG--SLFFLRVVHGKKEQDGGVY 68
++ K G P P + WY +G V+ SD + ++ G SL F V + D G Y
Sbjct: 25 MDFKVSGLPAPDVSWYLNGRTVQ---SDDLHKMIVSEKGLHSLIFEVV----RASDAGAY 77
Query: 69 WCLARNSVGTA 79
C+A+N G A
Sbjct: 78 ACVAKNRAGEA 88
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V + C+ P TI W++DG+L+ +S S I T S +L V E D G Y
Sbjct: 36 VNITCEVFAYPSATISWFRDGQLLPSSN---YSNIKIYNTPSASYLEVTP-DSENDFGNY 91
Query: 69 WCLARNSVG 77
C A N +G
Sbjct: 92 NCTAVNRIG 100
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V + + ++CK G P P + W DG+ V + D+ + ++ G ++
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPV---RPDSAHKMLVRENG--VHSLIIEPV 73
Query: 61 KEQDGGVYWCLARNSVG 77
+D G+Y C+A N G
Sbjct: 74 TSRDAGIYTCIATNRAG 90
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAK--SQRVILPTGSLFFLRVVHGKKEQDGG 66
V C + G P+PT+ W K+G+ K D + +V T S+ VV D G
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGKEF---KPDHRIGGYKVRYATWSIIMDSVV----PSDKG 86
Query: 67 VYWCLARNSVGTAVSRNATLQVAVV 91
Y C+ N G S N T Q+ VV
Sbjct: 87 NYTCIVENEYG---SINHTYQLDVV 108
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK--SDAKSQRVILPTGSLFF----LR 55
VA V CK P+P I+W K E V SK D IL T + +
Sbjct: 126 TVALGSNVEFMCKVYSDPQPHIQWLKHIE-VNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 56 VVHGKKE--QDGGVYWCLARNSVG 77
V+H + +D G Y CLA NS+G
Sbjct: 185 VLHLRNVSFEDAGEYTCLAGNSIG 208
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAK--SQRVILPTGSLFFLRVVHGKKEQDGG 66
V C + G P+PT+ W K+G+ K D + +V T S+ VV D G
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGKEF---KPDHRIGGYKVRYATWSIIMDSVV----PSDKG 87
Query: 67 VYWCLARNSVGTAVSRNATLQVAVV 91
Y C+ N G S N T Q+ VV
Sbjct: 88 NYTCIVENEYG---SINHTYQLDVV 109
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK--SDAKSQRVILPTGSLFF----LR 55
VA V CK P+P I+W K E V SK D IL T + +
Sbjct: 127 TVALGSNVEFMCKVYSDPQPHIQWLKHIE-VNGSKIGPDNLPYVQILKTAGVNTTDKEME 185
Query: 56 VVHGKKE--QDGGVYWCLARNSVG 77
V+H + +D G Y CLA NS+G
Sbjct: 186 VLHLRNVSFEDAGEYTCLAGNSIG 209
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
CK+ G P P W K V S++ + I+ + L +V+ + +D G Y C A
Sbjct: 114 CKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNA 173
Query: 73 RNSVGTA 79
NS+G+A
Sbjct: 174 TNSIGSA 180
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC 70
L C G+P P + W K G+ + A S+R+ P ++ D GVY C
Sbjct: 34 LKCVVLGEPPPVVVWEKGGQQL------AASERLSFPADGAEHGLLLTAALPTDAGVYVC 87
Query: 71 LARN 74
ARN
Sbjct: 88 RARN 91
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAK--SQRVILPTGSLFFLRVVHGKKEQDGG 66
V C + G P PT+ W K+G+ K D + +V T S+ VV D G
Sbjct: 34 VKFKCPSSGTPNPTLRWLKNGKEF---KPDHRIGGYKVRYATWSIIMDSVV----PSDKG 86
Query: 67 VYWCLARNSVGTAVSRNATLQVAVV 91
Y C+ N G S N T Q+ VV
Sbjct: 87 NYTCIVENEYG---SINHTYQLDVV 108
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK--SDAKSQRVILPTGSLFF----LR 55
VA V CK P+P I+W K E V SK D IL T + +
Sbjct: 126 TVALGSNVEFMCKVYSDPQPHIQWLKHIE-VNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 56 VVHGKKE--QDGGVYWCLARNSVG 77
V+H + +D G Y CLA NS+G
Sbjct: 185 VLHLRNVSFEDAGEYTCLAGNSIG 208
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
V + + L C G P P I W +G+ ++ ++S ++ L +
Sbjct: 23 VIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELH---------IQDALP 73
Query: 63 QDGGVYWCLARNSVG 77
+D G Y CLA N++G
Sbjct: 74 EDHGTYTCLAENALG 88
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
VA VTL C+ +P P I W KDG + S I P
Sbjct: 22 VAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGP--------------- 66
Query: 63 QDGGVYWCLA-RNSVGTAVSRNATLQV 88
QD G Y C+A +S G SR ++ +
Sbjct: 67 QDQGTYSCVATHSSHGPQESRAVSISI 93
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC 70
L C G+P P + W K G+ + A S+R+ P ++ D GVY C
Sbjct: 34 LKCVVLGEPPPVVVWEKGGQQL------AASERLSFPADGAEHGLLLTAALPTDAGVYVC 87
Query: 71 LARN 74
ARN
Sbjct: 88 RARN 91
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 17/77 (22%)
Query: 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETS-----KSDAKSQRVILPTGSLFFLRVVHGK 60
+E V L C+ + + P + WYKDG+ VE S +++ +R++LP
Sbjct: 21 SECVMLACEVDREDAP-VRWYKDGQEVEESDFVVLENEGPHRRLVLP-----------AT 68
Query: 61 KEQDGGVYWCLARNSVG 77
+ DGG + C+A +
Sbjct: 69 QPSDGGEFQCVAGDECA 85
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC 70
L C G+P P + W K G+ + A S+R+ P ++ D GVY C
Sbjct: 33 LKCVVLGEPPPVVVWEKGGQQL------AASERLSFPADGAEHGLLLTAALPTDAGVYVC 86
Query: 71 LARN 74
ARN
Sbjct: 87 RARN 90
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
VA VTL C+ +P P I W KDG + S I P
Sbjct: 15 VAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGP--------------- 59
Query: 63 QDGGVYWCLA-RNSVGTAVSRNATLQV 88
QD G Y C+A +S G SR ++ +
Sbjct: 60 QDQGTYSCVATHSSHGPQESRAVSISI 86
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 7 EPVTLNCK-AEGKPEPTIEWYKDGELVETSK-------SDAKSQRVILPTGSLFFLRVVH 58
EP+ L CK A KP +EW + E K S +LP GSLF V
Sbjct: 382 EPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAV-- 439
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
QD G++ C A N G N ++V
Sbjct: 440 --GIQDEGIFRCQAMNRNGKETKSNYRVRV 467
>pdb|2E5E|A Chain A, Solution Structure Of Variable-Type Domain Of Human
Receptor For Advanced Glycation Endproducts
Length = 101
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 7 EPVTLNCK-AEGKPEPTIEWYKDGELVETSK-------SDAKSQRVILPTGSLFFLRVVH 58
EP+ L CK A KP +EW + E K S +LP GSLF V
Sbjct: 12 EPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGI 71
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
QD G++ C A N G N ++V
Sbjct: 72 ----QDEGIFRCQAMNRNGKETKSNYRVRV 97
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKS---DAKSQRVILPTGSLFFLRVV 57
M V + +CK EG P+P + W+KD V+ S+ D + SL V
Sbjct: 51 MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG----NCSLTISEVC 106
Query: 58 HGKKEQDGGVYWCLARNSVGTAV 80
D Y C A NS+G A
Sbjct: 107 G----DDDAKYTCKAVNSLGEAT 125
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKS---DAKSQRVILPTGSLFFLRVV 57
M V + +CK EG P+P + W+KD V+ S+ D + SL V
Sbjct: 51 MDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG----NCSLTISEVC 106
Query: 58 HGKKEQDGGVYWCLARNSVGTAV 80
D Y C A NS+G A
Sbjct: 107 G----DDDAKYTCKAVNSLGEAT 125
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+VV + + VT+ CK G P P + W + + + ++ + V+ G
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGL-----------VIKGV 367
Query: 61 KEQDGGVYWCLARNSVG 77
K D G Y C A N G
Sbjct: 368 KNGDKGYYGCRATNEHG 384
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 17 GKPEPTIEWYKDGELVETSK--SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN 74
G P PT+ W +G+ + SK Q + G L F + H + G Y +A+N
Sbjct: 31 GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH----YNNGNYTLIAKN 86
Query: 75 SVGTA 79
+GTA
Sbjct: 87 PLGTA 91
>pdb|2L7U|A Chain A, Structure Of Cel-Pep-Rage V Domain Complex
Length = 105
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 7 EPVTLNCK-AEGKPEPTIEWYKDGELVETSK-------SDAKSQRVILPTGSLFFLRVVH 58
EP+ L CK A KP +EW + E K S +LP GSLF V
Sbjct: 12 EPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGI 71
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
QD G++ C A N G N ++V
Sbjct: 72 ----QDEGIFRCQAMNRNGKETKSNYRVRV 97
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
+ P+ ++C + P +I W +D +LV +K+ + TG L + + D
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRD-KLVLPAKNTTNLK--TYSTGRKMILEIA-PTSDND 169
Query: 65 GGVYWCLARNSVGT 78
G Y C A N +GT
Sbjct: 170 FGRYNCTATNHIGT 183
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYK--DG-ELVETSKSDAKSQRVILPTGSLFFLRVVHGK- 60
+N VTL C AEG+P P I W + DG E KS V GS +H K
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS----SSLHIKD 69
Query: 61 -KEQDGGVYWCLARNSVG 77
K D G Y C A + +G
Sbjct: 70 VKLSDSGRYDCEAASRIG 87
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 11 LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
C A G+PE +I+WY GE + +QRV++ + ++ +D G+Y
Sbjct: 22 FTCTAIGEPE-SIDWYNPQGEKI------ISTQRVVVQKEGVRSRLTIYNANIEDAGIYR 74
Query: 70 CLARNSVGTAVSRNATLQV 88
C A ++ G L++
Sbjct: 75 CQATDAKGQTQEATVVLEI 93
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human
Il-1beta And Il-1ra, Bound To Human Interleukin-1
Receptor Type 1
Length = 319
Score = 32.3 bits (72), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 22 TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS 75
TI WYKD +T S ++ R+ L+F+ K +D G Y+C+ RNS
Sbjct: 37 TITWYKDDS--KTPVSTEQASRIHQHKEKLWFVPA----KVEDSGHYYCVVRNS 84
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 22 TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS 75
TI WYKD +T S ++ R+ L+F+ K +D G Y+C+ RNS
Sbjct: 34 TITWYKDDS--KTPVSTEQASRIHQHKEKLWFVPA----KVEDSGHYYCVVRNS 81
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With
Interleukin-1 Beta
Length = 315
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 22 TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS 75
TI WYKD +T S ++ R+ L+F+ K +D G Y+C+ RNS
Sbjct: 37 TITWYKDDS--KTPVSTEQASRIHQHKEKLWFVPA----KVEDSGHYYCVVRNS 84
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 22 TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS 75
TI WYKD +T S ++ R+ L+F+ K +D G Y+C+ RNS
Sbjct: 39 TITWYKDDS--KTPVSTEQASRIHQHKEKLWFVPA----KVEDSGHYYCVVRNS 86
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
P+ ++C + P +I W +D +LV +K+ + TG L + + D G
Sbjct: 117 PINISCDVKSNPPASIHWRRD-KLVLPAKNTTNLK--TYSTGRKMILEIA-PTSDNDFGR 172
Query: 68 YWCLARNSVGT 78
Y C A N +GT
Sbjct: 173 YNCTATNHIGT 183
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYK--DG-ELVETSKS-DAKSQRVILPTGSLFFLRVVHGK 60
+N VTL C AEG+P P I W + DG E KS D + + S ++ V
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV--- 70
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
K D G Y C A + +G ++ L + FIS
Sbjct: 71 KLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFIS 105
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 6 NEPVTLNCK-AEGKPEPTIEWYKDGELVETSK-------SDAKSQRVILPTGSLFFLRVV 57
EP+ L CK A KP +EW + E K S +LP GSLF V
Sbjct: 10 GEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAV- 68
Query: 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
QD G++ C A N G N ++V
Sbjct: 69 ---GIQDEGIFRCQAMNRNGKETKSNYRVRV 96
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 11 LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
C A G+PE +I+WY GE + +QRV++ + ++ +D G+Y
Sbjct: 20 FTCTAIGEPE-SIDWYNPQGEKI------ISTQRVVVQKEGVRSRLTIYNANIEDAGIYR 72
Query: 70 CLARNSVGTAVSRNATLQV 88
C A ++ G L++
Sbjct: 73 CQATDAKGQTQEATVVLEI 91
>pdb|3IY6|A Chain A, Variable Domains Of The Computer Generated Model (Wam)
Of Fab E Fitted Into The Cryoem Reconstruction Of The
Virus- Fab E Complex
Length = 107
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGELVETSKSDAKSQRVILP---TGS---LF 52
M ++ + VT+NCKA + ++WY K G+ A ++ +P TGS
Sbjct: 9 MSISVGDRVTMNCKASQNVDSNVDWYQQKTGQSPNLLIYKASNRNTGVPDRFTGSGSGTD 68
Query: 53 FLRVVHGKKEQDGGVYWCLARNS 75
F + + +D VY+C+ S
Sbjct: 69 FTFTISNMQAEDLAVYYCMQSTS 91
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 6 NEPVTLNCK-AEGKPEPTIEWYKDGELVETSK-------SDAKSQRVILPTGSLFFLRVV 57
EP+ L CK A KP +EW + E K S +LP GSLF V
Sbjct: 13 GEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAV- 71
Query: 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
QD G++ C A N G N ++V
Sbjct: 72 ---GIQDEGIFRCQAMNRNGKETKSNYRVRV 99
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 17/75 (22%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETS-----KSDAKSQRVILPTGSLFFLR 55
+ +E V L C+ P WYKDG+ VE S K D + R+ILP
Sbjct: 20 LTFTTSERVVLTCELSRVDFPAT-WYKDGQKVEESELLVVKMDGRKHRLILPEA------ 72
Query: 56 VVHGKKEQDGGVYWC 70
K QD G + C
Sbjct: 73 -----KVQDSGEFEC 82
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSK---SDAKSQRVILPTGSLFFLRVV 57
+V ++E CK G PE + WYKD E+ E+SK S +S V+ ++ L V
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL----EMYNLSV- 164
Query: 58 HGKKEQDGGVYWCLARN 74
+D G Y C A N
Sbjct: 165 -----EDSGDYTCEAHN 176
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYKDG-ELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
K V L C+ +G P + W+KD EL K S+ + S+ L V
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT---SIHILNV----DSA 258
Query: 64 DGGVYWCLARNSVGT 78
D G Y C A N VG+
Sbjct: 259 DIGEYQCKASNDVGS 273
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSK---SDAKSQRVILPTGSLFFLRVV 57
+V ++E CK G PE + WYKD E+ E+SK S +S V+ ++ L V
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL----EMYNLSV- 164
Query: 58 HGKKEQDGGVYWCLARN 74
+D G Y C A N
Sbjct: 165 -----EDSGDYTCEAHN 176
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYKDG-ELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
K V L C+ +G P + W+KD EL K S+ + S+ L V
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT---SIHILNV----DSA 258
Query: 64 DGGVYWCLARNSVGT 78
D G Y C A N VG+
Sbjct: 259 DIGEYQCKASNDVGS 273
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
VTL C A G P P I W K E + ++ + S V+ +F +++ +D G+Y
Sbjct: 131 VTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVL----KIFNIQL------EDEGIY 180
Query: 69 WCLARNSVG 77
C A N G
Sbjct: 181 ECEAENIRG 189
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGVY 68
L CKA G P P I W K+G A Q G+L LR+ D G Y
Sbjct: 28 LKCKATGDPLPVISWLKEGFTFPGRDPRATIQE----QGTLQIKNLRI------SDTGTY 77
Query: 69 WCLARNSVG 77
C+A +S G
Sbjct: 78 TCVATSSSG 86
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
V + + V ++ + +G+P+P + W ++ + V + + G L LR++ ++
Sbjct: 17 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEE----AEGGLCRLRILAAER- 71
Query: 63 QDGGVYWCLARNSVGT 78
D G Y C A N G
Sbjct: 72 GDAGFYTCKAVNEYGA 87
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 63 QDGGVYWCLARNSVGTAVSRNATLQVAVV 91
QD G+Y C+A N VGT R AT+ VV
Sbjct: 255 QDAGIYSCVASNDVGT---RTATMNFQVV 280
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 63 QDGGVYWCLARNSVGTAVSRNATLQVAVV 91
QD G+Y C+A N VGT R AT+ VV
Sbjct: 255 QDAGIYSCVASNDVGT---RTATMNFQVV 280
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT+ W K+G+ + + +V SL VV D G Y
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRNQHWSLIMESVV----PSDKGNY 84
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 85 TCVVENEYG---SINHTYHLDVV 104
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT+ W K+G+ + + +V SL VV D G Y
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRNQHWSLIMESVV----PSDKGNY 80
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 81 TCVVENEYG---SINHTYHLDVV 100
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT+ W K+G+ + + +V SL VV D G Y
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRNQHWSLIMESVV----PSDKGNY 85
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 86 TCVVENEYG---SINHTYHLDVV 105
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
V + L C+A ++ W V T + K + +L G+L F V
Sbjct: 353 VTEGMAAELKCRAS-TSLTSVSWITPNGTVMTHGA-YKVRIAVLSDGTLNFTNVT----V 406
Query: 63 QDGGVYWCLARNSVGTAVSRNATLQV 88
QD G+Y C+ NSVG + +ATL V
Sbjct: 407 QDTGMYTCMVSNSVGNTTA-SATLNV 431
>pdb|1K8I|B Chain B, Crystal Structure Of Mouse H2-Dm
Length = 191
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 7 EPVTLNCKAEG--KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH-GKKEQ 63
EPV L C G + TI W K+G+LV S + ++ P G + V +
Sbjct: 110 EPVMLACYVWGFYPADVTITWMKNGQLV---PSHSNKEKTAQPNGDWTYQTVSYLALTPS 166
Query: 64 DGGVYWCLARNS 75
G VY C+ ++S
Sbjct: 167 YGDVYTCVVQHS 178
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT+ W K+G+ + + +V SL VV D G Y
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRNQHWSLIMESVV----PSDKGNY 83
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 84 TCVVENEYG---SINHTYHLDVV 103
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT+ W K+G+ + + +V SL VV D G Y
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRNQHWSLIMESVV----PSDKGNY 82
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 83 TCVVENEYG---SINHTYHLDVV 102
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT+ W K+G+ + + +V SL VV D G Y
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRNQHWSLIMESVV----PSDKGNY 91
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 92 TCVVENEYG---SINHTYHLDVV 111
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT+ W K+G+ + + +V SL VV D G Y
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRNQHWSLIMESVV----PSDKGNY 83
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 84 TCVVENEYG---SINHTYHLDVV 103
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT+ W K+G+ + + +V SL VV D G Y
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRNQHWSLIMESVV----PSDKGNY 83
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 84 TCVVENEYG---SINHTYHLDVV 103
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT+ W K+G+ + + +V SL VV D G Y
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRNQHWSLIMESVV----PSDKGNY 81
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 82 TCVVENEYG---SINHTYHLDVV 101
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 11 LNCKAEGKPEPTIEWY 26
L C A G PEPTI+WY
Sbjct: 401 LQCVAAGFPEPTIDWY 416
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 11 LNCKAEGKPEPTIEWY 26
L C A G PEPTI+WY
Sbjct: 426 LQCVAAGFPEPTIDWY 441
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT+ W K+G+ + + +V SL VV D G Y
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRNQHWSLIMESVV----PSDKGNY 91
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 92 TCVVENEYG---SINHTYHLDVV 111
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 17 GKPEPTIEWYKDGELVETS 35
GKP+P EWYK+G +E S
Sbjct: 31 GKPDPECEWYKNGVKIERS 49
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSK--SDAKSQRVILPTGSL------FFLRVVHGK 60
V +CK +P I+W K E V SK D +L T + +H
Sbjct: 240 VEFHCKVYSDAQPHIQWLKHVE-VNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298
Query: 61 KEQDGGVYWCLARNSVG 77
+D G Y CLA NS+G
Sbjct: 299 TFEDAGEYTCLAGNSIG 315
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDG 29
+ V V C A G P P+I W K+G
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNG 161
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
Length = 104
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEW-YKDGELVETSKSDAK-----SQRV-ILPTGSLFFLR 55
+ +N PV L+C G P +EW + G+ + K RV LPTG F
Sbjct: 15 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITF--- 71
Query: 56 VVHGKKEQDGGVYWCLARNSVGTA 79
+D G Y C+ G +
Sbjct: 72 --KSVTREDTGTYTCMVSEEGGNS 93
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGE 30
V L+C+A G P P I+W+ +G+
Sbjct: 39 VELHCEAVGSPVPEIQWWFEGQ 60
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGE 30
V L+C+A G P P I+W+ +G+
Sbjct: 39 VELHCEAVGSPVPEIQWWFEGQ 60
>pdb|2ARJ|L Chain L, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
pdb|2ARJ|A Chain A, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
Length = 211
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGELVETSKSDAKSQRVILP---TGSLF--- 52
+ V+ E VTLNCKA I WY K G+ + A + +P TG F
Sbjct: 11 LAVSAGERVTLNCKASQNVRNNIAWYQQKPGQSPKLLIYYASYRYTGVPDRFTGDGFGTD 70
Query: 53 FLRVVHGKKEQDGGVYWC 70
F ++ + D Y+C
Sbjct: 71 FTLAINSVQADDAAFYYC 88
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 19 PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
P + WYKDGE + A RV L + V G + D G Y C A
Sbjct: 23 PGGPVRWYKDGERL------ASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA 70
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ +D G+YWC A G + R+ L++ V+
Sbjct: 231 RREDSGLYWCEAATEDGNVLKRSPELELQVL 261
>pdb|3K0X|A Chain A, Crystal Structure Of Telomere Capping Protein Ten1 From
Saccharomyces Pombe
Length = 102
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 22 TIEWYKDG--ELVETSKSDAKSQRVILPTGSLF---FLRVVHGKKEQDGGVYWCLARNSV 76
++ YK+G L++ S S V+LP S+ +L +V G+K QDG V L R++V
Sbjct: 26 CVQSYKNGILRLIDGSSSVTCDVTVVLPDVSIQKHEWLNIV-GRKRQDGIVDVLLIRSAV 84
Query: 77 GTAVSR 82
G + R
Sbjct: 85 GINLPR 90
>pdb|3GIZ|L Chain L, Crystal Structure Of The Fab Fragment Of Anti-Cd20
Antibody Ofatumumab
Length = 211
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGELVETSKSDAKSQRVILP-------TGSL 51
+ ++ E TL+C+A + WY K G+ DA ++ +P +G+
Sbjct: 11 LSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTD 70
Query: 52 FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
F L + + E D VY+C R++ + L++ + S F F S
Sbjct: 71 FTLTISSLEPE-DFAVYYCQQRSNWPITFGQGTRLEIKRTVAAPSVFIFPPS 121
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT W K+G+ + + +V SL VV D G Y
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFK-QEHRIGGYKVRNQHWSLIXESVV----PSDKGNY 83
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 84 TCVVENEYG---SINHTYHLDVV 103
>pdb|3M8O|L Chain L, Human Iga1 Fab Fragment
pdb|3QNX|A Chain A, Orthorhombic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|A Chain A, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|C Chain C, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNZ|A Chain A, Orthorhombic Form Of Igg1 Fab Fragment (in Complex With
Antigenic Tubulin Peptide) Sharing Same Fv As Iga
pdb|3QO0|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (In Complex With
Antigenic Peptide) Sharing Same Fv As Iga
pdb|3QO1|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (apo Form) Sharing
Same Fv As Iga
Length = 219
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 19/119 (15%)
Query: 1 MVVAKNEPVTLNCKA-------EGKPEPTIEWY--KDGE-------LVETSKSDAKSQRV 44
+ V EP +++C++ +G + +EWY K G+ L T S +
Sbjct: 11 LSVTPGEPASISCRSSQSLLRRDGHND--LEWYLQKPGQSPQPLIYLGSTRASGVPDRFS 68
Query: 45 ILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
+G+ F L+++ + E D G Y+C+ + L++ + S F F S
Sbjct: 69 GSGSGTDFTLKIIRVEAE-DAGTYYCMQNKQTPLTFGQGTRLEIKRTVAAPSVFIFPPS 126
>pdb|3KF6|B Chain B, Crystal Structure Of S. Pombe Stn1-Ten1 Complex
Length = 105
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 22 TIEWYKDG--ELVETSKSDAKSQRVILPTGSLF---FLRVVHGKKEQDGGVYWCLARNSV 76
++ YK+G L++ S S V+LP S+ +L +V G+K QDG V L R++V
Sbjct: 29 CVQSYKNGILRLIDGSSSVTCDVTVVLPDVSIQKHEWLNIV-GRKRQDGIVDVLLIRSAV 87
Query: 77 GTAVSR 82
G + R
Sbjct: 88 GINLPR 93
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V C A G P PT W K+G+ + + +V SL VV D G Y
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFK-QEHRIGGYKVRNQHWSLIXESVV----PSDKGNY 90
Query: 69 WCLARNSVGTAVSRNATLQVAVV 91
C+ N G S N T + VV
Sbjct: 91 TCVVENEYG---SINHTYHLDVV 110
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDG 29
+ V V C A G P P+I W K+G
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNG 53
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSK--SDAKSQRVILPT------GSLFFLRVVHGK 60
V +CK +P I+W K E V SK D +L + + LR+ +
Sbjct: 132 VEFHCKVYSDAQPHIQWLKHVE-VNGSKVGPDGTPYVTVLKSWISESVEADVRLRLAN-V 189
Query: 61 KEQDGGVYWCLARNSVGTA 79
E+DGG Y C A N +G A
Sbjct: 190 SERDGGEYLCRATNFIGVA 208
>pdb|2YBR|B Chain B, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YBR|E Chain E, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YBR|H Chain H, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YC1|B Chain B, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YC1|E Chain E, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
Length = 146
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGELVETSKSDAKSQRVILP---TGS---LF 52
+ V+ E TL+C+A + WY K G+ SDA ++ +P TGS
Sbjct: 26 LSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTD 85
Query: 53 FLRVVHGKKEQDGGVYWC 70
F + + +D +Y+C
Sbjct: 86 FTLTISSLEPEDFAIYYC 103
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
+T+ C G+P P + W G + S + + I T L L ++ +K QDGG+Y
Sbjct: 25 LTVACAFTGEPTPEVTWSCGGRKIH---SQEQGRFHIENTDDLTTLIIMDVQK-QDGGLY 80
Query: 69 WCLARNSVGTAVSRNATLQVAV 90
N G S +AT+ + +
Sbjct: 81 TLSLGNEFG---SDSATVNIHI 99
>pdb|1HDM|B Chain B, Histocompatibility Antigen Hla-Dm
Length = 193
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 7 EPVTLNCKAEG--KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
EPV L C G E TI W K+G+LV S + +Q P G + + H
Sbjct: 105 EPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQ----PNGDWTYQTLSH 154
>pdb|4I0P|B Chain B, Hla-do In Complex With Hla-dm
pdb|4I0P|F Chain F, Hla-do In Complex With Hla-dm
Length = 191
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 7 EPVTLNCKAEG--KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH-GKKEQ 63
EPV L C G E TI W K+G+LV S K+ + P G + + H
Sbjct: 109 EPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQ---PNGDWTYQTLSHLALTPS 165
Query: 64 DGGVYWCLARN 74
G Y C+ +
Sbjct: 166 YGDTYTCVVEH 176
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGE-LVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ + + + + L C G P P + W K+ + L +T + K G + ++G
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLK-----FEAGRTAYF-TING 180
Query: 60 KKEQDGGVYWCLARNSVGTAVS 81
D G Y + +N G+ S
Sbjct: 181 VSTADSGKYGLVVKNKYGSETS 202
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
+T+ C G+P P + W G + S + + I T L L ++ +K QDGG+Y
Sbjct: 23 LTVACAFTGEPTPEVTWSCGGRKIH---SQEQGRFHIENTDDLTTLIIMDVQK-QDGGLY 78
Query: 69 WCLARNSVGTAVSRNATLQVAV 90
N G S +AT+ + +
Sbjct: 79 TLSLGNEFG---SDSATVNIHI 97
>pdb|2BC4|B Chain B, Crystal Structure Of Hla-Dm
pdb|2BC4|D Chain D, Crystal Structure Of Hla-Dm
Length = 211
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 7 EPVTLNCKAEG--KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH-GKKEQ 63
EPV L C G E TI W K+G+LV S K+ + P G + + H
Sbjct: 111 EPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQ---PNGDWTYQTLSHLALTPS 167
Query: 64 DGGVYWCLARN 74
G Y C+ +
Sbjct: 168 YGDTYTCVVEH 178
>pdb|4FQX|D Chain D, Crystal Structure Of Hla-Dm Bound To Hla-Dr1
pdb|4GBX|D Chain D, Crystal Structure Of An Immune Complex At Ph 6.5
Length = 199
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 7 EPVTLNCKAEG--KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
EPV L C G E TI W K+G+LV S K+ + P G + + H
Sbjct: 111 EPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQ---PNGDWTYQTLSH 161
>pdb|2GHW|B Chain B, Crystal Structure Of Sars Spike Protein Receptor Binding
Domain In Complex With A Neutralizing Antibody, 80r
pdb|2GHW|D Chain D, Crystal Structure Of Sars Spike Protein Receptor Binding
Domain In Complex With A Neutralizing Antibody, 80r
Length = 247
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGELVETSKSDAKSQRVILP-------TGSL 51
+ ++ E TL+C+A + WY K G+ DA ++ +P +G+
Sbjct: 145 LSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTD 204
Query: 52 FFLRVVHGKKEQDGGVYWCLARN 74
F L + + E D VY+C R+
Sbjct: 205 FTLTISRLEPE-DFAVYYCQQRS 226
>pdb|2OU6|A Chain A, Crystal Structure Of A Putative Metalloenzyme Of The
Duf664 Family (Dr_1065) From Deinococcus Radiodurans At
1.80 A Resolution
Length = 190
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATL 86
E DG YW L GTA +R TL
Sbjct: 97 PEDDGAAYWGLTXGKEGTAPARLPTL 122
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDGELVETSKS 37
E V + K G P P I+WYK+G +E++ +
Sbjct: 216 ERVRIPAKYLGYPPPEIKWYKNGIPLESNHT 246
>pdb|1PZ3|A Chain A, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
pdb|1PZ3|B Chain B, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
Length = 502
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 47 PTGSLFF-LRVVHGKKEQDGGVYWCLARNSVG 77
P+GS + LR+ HG KE WCL G
Sbjct: 147 PSGSYYSDLRIAHGYKEPHKIKTWCLGNEMDG 178
>pdb|3HG1|E Chain E, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 244
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDG 29
+V P++L C EG P + WY+
Sbjct: 11 LVQPVGSPLSLECTVEGTSNPNLYWYRQA 39
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + + + + L C G P P + W K+ + + SD + +F ++G
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL---ASDDHCNLKFEAGRTAYF--TINGV 286
Query: 61 KEQDGGVYWCLARNSVGTAVS 81
D G Y + +N G+ S
Sbjct: 287 STADSGKYGLVVKNKYGSETS 307
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
+ L C A G P P +W+K+ EL T + T L+ + V + + G Y
Sbjct: 21 LVLQCVAVGSPIPHYQWFKN-ELPLTHE-----------TKKLYMVPYVDLEHQ---GTY 65
Query: 69 WCLARNSVGTAVSRNATL 86
WC N + S+ +
Sbjct: 66 WCHVYNDRDSQDSKKVEI 83
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like
Domain(2826-2915) From Human Obscurin
Length = 103
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHGKK 61
VA E V L C+ P + W KD + + KSQ+ ++ G++ L V+ G
Sbjct: 20 VAPGEDVELRCELSRAGTP-VHWLKDRKAIR------KSQKYDVVCEGTMAML-VIRGAS 71
Query: 62 EQDGGVYWCLARNSVGTA 79
+D G Y C S TA
Sbjct: 72 LKDAGEYTCEVEASKSTA 89
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLR 55
E + L +GKP P + W K G ++TS+ ++ ++FF+R
Sbjct: 39 GEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF----DTVFFVR 84
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
+ L C A G P P +W+K+ EL T + T L+ + V + + G Y
Sbjct: 136 LVLQCVAVGSPIPHYQWFKN-ELPLTHE-----------TKKLYMVPYVDLEHQ---GTY 180
Query: 69 WCLARNSVGTAVSR 82
WC N + S+
Sbjct: 181 WCHVYNDRDSQDSK 194
>pdb|3IY7|A Chain A, Variable Domains Of The Computer Generated Model (Wam)
Of Fab F Fitted Into The Cryoem Reconstruction Of The
Virus- Fab F Complex
Length = 106
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 9 VTLNCKAEGKPEPTIEWYKD 28
VTLNCKA +EWY+
Sbjct: 17 VTLNCKASHNINKNLEWYQQ 36
>pdb|3QS7|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 423
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC 70
L C +E PEP +EW E+ K ++ P +V+H E G C
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEES-------PAVVKKEEKVLH---ELFGTDIRC 208
Query: 71 LARNSVGTAVSR------NATLQVAVVIFFI 95
ARN +G +R N T Q + F+
Sbjct: 209 CARNELGRECTRLFTIDLNQTPQTTLPQLFL 239
>pdb|1I8I|A Chain A, Crystal Structure Of Dsfv Mr1 In Complex With The
Peptide Antigen Of The Mutant Epidermal Growth Factor
Receptor, Egfrviii, At Room Temperature
pdb|1I8K|A Chain A, Crystal Structure Of Dsfv Mr1 In Complex With The
Peptide Antigen Of The Mutant Epidermal Growth Factor
Receptor, Egfrviii, At Liquid Nitrogen Temperature
Length = 107
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGELVETSKSDAKSQRVILP-------TGSL 51
+ VA E VT+ C + + WY K GE + S+ + R +P TG+
Sbjct: 11 LSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTD 70
Query: 52 FFLRVVHGKKEQDGGVYWCL 71
F + + E D G Y+CL
Sbjct: 71 FVFTIENTLSE-DVGDYYCL 89
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVE 33
M + E T N + G P P I WY++G+ +E
Sbjct: 131 MEDSAQEIATCNSR-NGNPAPKITWYRNGQRLE 162
>pdb|3L5W|L Chain L, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L5W|A Chain A, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L7E|L Chain L, Crystal Structure Of Anti-Il-13 Antibody C836
pdb|3L7E|A Chain A, Crystal Structure Of Anti-Il-13 Antibody C836
Length = 214
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 24/119 (20%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLF-------- 52
+ + E +TLNC+A + WY++ K+ ++++ +GS
Sbjct: 11 LAASPGETITLNCRASKSISKYLAWYQE--------KPGKTNKLLIYSGSTLQSGIPSRF 62
Query: 53 --------FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
F + + +D +Y+C N L++ + S F F S
Sbjct: 63 SGSGSGTDFTLTISSLEPEDFAMYFCQQHNEYPYTFGGGTKLEIKRTVAAPSVFIFPPS 121
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
V + L C+ G ++ W + T S + + +L G+L F V
Sbjct: 324 VTEGMAAELKCRT-GTSMTSVNWLTPNGTLMTHGS-YRVRISVLHDGTLNFTNVT----V 377
Query: 63 QDGGVYWCLARNSVGTAVSRNATLQVA 89
QD G Y C+ NS G + +ATL V
Sbjct: 378 QDTGQYTCMVTNSAGNTTA-SATLNVG 403
>pdb|1JHL|L Chain L, Three-Dimensional Structure Of A Heteroclitic Antigen-
Antibody Cross-Reaction Complex
Length = 108
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD 28
+V + E +T+NC+A ++ WY++
Sbjct: 11 LVASPGETITINCRASKSISKSLAWYQE 38
>pdb|3QS9|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 527
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC 70
L C +E PEP +EW E+ K ++ P +V+H E G C
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEES-------PAVVKKEEKVLH---ELFGTDIRC 208
Query: 71 LARNSVGTAVSR------NATLQVAVVIFFI 95
ARN +G +R N T Q + F+
Sbjct: 209 CARNELGRECTRLFTIDLNQTPQTTLPQLFL 239
>pdb|4DGV|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Hcv1, P2(1) Form
pdb|4DGY|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Hcv1, C2 Form
Length = 213
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGELVETSKSDAKSQRVILP-------TGSL 51
+ ++ E TL+C+A + WY K G+ DA ++ +P +G+
Sbjct: 11 LSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTD 70
Query: 52 FFLRVVHGKKEQDGGVYWCLARN 74
F L + + E D VY+C R+
Sbjct: 71 FTLTISSLEPE-DFAVYYCQQRS 92
>pdb|3EYQ|C Chain C, Crystal Structure Of Mj5 Fab, A Germline Antibody
Variant Of Anti-Human Cytomegalovirus Antibody 8f9
Length = 216
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGELVETSKSDAKSQRVILP-------TGSL 51
+ ++ E TL+C+A + WY K G+ DA ++ +P +G+
Sbjct: 12 LSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTD 71
Query: 52 FFLRVVHGKKEQDGGVYWCLARN 74
F L + + E D VY+C R+
Sbjct: 72 FTLTISSLEPE-DFAVYYCQQRS 93
>pdb|3C60|A Chain A, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|E Chain E, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
Length = 199
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGE-----LVETSKSDAKSQRVILPT---GS 50
+ +++N+ + +NC PT+ WY GE L T+ ++ S R T G+
Sbjct: 10 VTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGT 69
Query: 51 LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
F +E D VY+C A + LQV
Sbjct: 70 TSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQV 107
>pdb|2IG2|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 455
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 19 PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN 74
P+ WY DG V +K+ + Q+ + L V+H + DG Y C N
Sbjct: 280 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLH-QNWLDGKEYKCKVSN 334
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 17/67 (25%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
++L+C A P W DG + + T LF + E++ G+Y
Sbjct: 399 LSLSCHAASNPPAQYSWLIDGNIQQH-------------TQELFISNIT----EKNSGLY 441
Query: 69 WCLARNS 75
C A NS
Sbjct: 442 TCQANNS 448
>pdb|3RGV|A Chain A, A Single Tcr Bound To Mhci And Mhc Ii Reveals Switchable
Tcr Conformers
Length = 200
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGE-----LVETSKSDAKSQRVILPT---GS 50
+ +++N+ + +NC PT+ WY GE L T+ ++ S R T G+
Sbjct: 10 VTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGT 69
Query: 51 LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
F +E D VY+C A + LQV
Sbjct: 70 TSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQV 107
>pdb|3F12|A Chain A, Germline V-Genes Sculpt The Binding Site Of A Family Of
Antibodies Neutralizing Human Cytomegalovirus
pdb|3F12|C Chain C, Germline V-Genes Sculpt The Binding Site Of A Family Of
Antibodies Neutralizing Human Cytomegalovirus
Length = 216
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGELVETSKSDAKSQRVILP-------TGSL 51
+ ++ E TL+C+A + WY K G+ DA ++ +P +G+
Sbjct: 12 LSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTD 71
Query: 52 FFLRVVHGKKEQDGGVYWCLARN 74
F L + + E D VY+C R+
Sbjct: 72 FTLTISSLEPE-DFAVYYCQQRS 93
>pdb|1JGL|L Chain L, Crystal Structure Of Immunoglobulin Fab Fragment
Complexed With 17-Beta-Estradiol
pdb|1JHK|L Chain L, Crystal Structure Of The Anti-Estradiol Antibody 57-2
Length = 214
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 7 EPVTLNCKAEGKPEPTIEWY--KDGELVETSKSDAKSQRVILP-------TGSLFFLRVV 57
E VT+ C+A G + WY K G+ + +AK+ +P +G+ + L+ +
Sbjct: 17 ETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFSGSGSGTQYSLK-I 75
Query: 58 HGKKEQDGGVYWC 70
+ + +D G Y+C
Sbjct: 76 NSLQPEDFGTYYC 88
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 23 IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL 71
I+WYKD L+ D +++ + G+ L VH +D G Y C+
Sbjct: 157 IQWYKDSLLL-----DKDNEKFLSVRGTTHLL--VHDVALEDAGYYRCV 198
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 45 ILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
I TG L F V++ + D G Y C A + + +NA LQV
Sbjct: 177 IQGTGQLLFSVVINQLRLSDAGQYLCQAGDD-SNSNKKNADLQV 219
>pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken
Egg- White Lysozyme
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken
Egg- White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken
Egg- White Lysozyme Complexed With Lysozyme
Length = 214
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDG---------ELVETSKSDAKSQRVILPTGSL 51
+ V + V+L+C+A + WY+ + V S S S+ +G+
Sbjct: 11 LSVTPGDSVSLSCRASQSISNNLHWYQQKSHESPRLLIKYVSQSSSGIPSRFSGSGSGTD 70
Query: 52 FFLRVVHGKKEQDGGVYWCLARNS 75
F L ++ + +D G+Y+C NS
Sbjct: 71 FTLS-INSVETEDFGMYFCQQSNS 93
>pdb|1B4J|L Chain L, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An
Anti-Gamma-Interferon Antibody
Length = 214
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK 27
M V+ E VTL+CKA + + WY+
Sbjct: 11 MYVSIGERVTLSCKASENVDTYVSWYQ 37
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 12 NCKAEGKPEPTIEWYKDGELVETSKS 37
+C AEG P P++ W D E+ T+ S
Sbjct: 139 SCTAEGSPAPSVTW--DTEVKGTTSS 162
>pdb|3AAZ|B Chain B, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
pdb|3AAZ|L Chain L, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
Length = 229
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 1 MVVAKNEPVTLNCKA-----EGKPEPTIEWY--KDGE-------LVETSKSDAKSQRVIL 46
+ V EP +++C++ +EWY K G+ V T S +
Sbjct: 11 LPVTPGEPASISCRSSQSIVHSNGHTYLEWYLQKPGQSPRLLIYQVSTRFSGVPDRFSGS 70
Query: 47 PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
+G+ F L++ + E D GVY+C + V + L++ + S F F S
Sbjct: 71 GSGTDFTLKISRVEAE-DVGVYYCFQASLVPLTFGQGTKLEIKRTVAAPSVFIFPPS 126
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain
Of Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL---PTGSLFFLRVVHG 59
V + + V L C+ P P + W ++ E+V+ + + R+ L TG + L +
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN-----TDRISLYQDNTGRVTLL--IKD 79
Query: 60 KKEQDGGVYWCLARNSVG 77
++D G Y A N G
Sbjct: 80 VNKKDAGWYTVSAVNEAG 97
>pdb|3N8T|A Chain A, Native Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3N92|A Chain A, Crystal Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis,
In Complex With Glucose
pdb|3N98|A Chain A, Crystal Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis,
In Complex With Glucose And Additives
Length = 562
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 52 FFLRVVHGKKEQDGGVYWCLARNSVG 77
F+ R H K + GG YW + VG
Sbjct: 280 FWYREFHKKAPKSGGQYWRITSKEVG 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,393,679
Number of Sequences: 62578
Number of extensions: 120298
Number of successful extensions: 874
Number of sequences better than 100.0: 206
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 290
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)