Query psy8666
Match_columns 124
No_of_seqs 118 out of 1719
Neff 11.1
Searched_HMMs 46136
Date Sat Aug 17 00:38:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.7 2.5E-16 5.4E-21 86.3 10.1 86 2-94 11-96 (98)
2 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 1.3E-15 2.8E-20 81.6 10.4 81 1-87 5-85 (86)
3 cd05745 Ig3_Peroxidasin Third 99.7 6E-16 1.3E-20 80.7 8.8 73 5-87 1-73 (74)
4 cd05737 Ig_Myomesin_like_C C-t 99.7 2.8E-15 6E-20 81.3 10.7 79 2-87 12-91 (92)
5 cd04975 Ig4_SCFR_like Fourth i 99.7 2.3E-15 4.9E-20 82.8 10.3 83 2-89 14-100 (101)
6 cd07693 Ig1_Robo First immunog 99.7 5.3E-15 1.1E-19 81.2 11.2 87 2-88 12-99 (100)
7 cd05892 Ig_Myotilin_C C-termin 99.7 3.3E-15 7.1E-20 78.0 9.6 75 9-88 1-75 (75)
8 cd05852 Ig5_Contactin-1 Fifth 99.7 1.7E-15 3.7E-20 78.7 8.0 72 6-87 1-72 (73)
9 cd05851 Ig3_Contactin-1 Third 99.6 3.8E-15 8.2E-20 80.2 9.0 76 2-88 12-87 (88)
10 cd05859 Ig4_PDGFR-alpha Fourth 99.6 4.5E-15 9.8E-20 81.7 8.9 83 2-89 14-100 (101)
11 cd05893 Ig_Palladin_C C-termin 99.6 7.9E-15 1.7E-19 76.6 9.4 75 9-88 1-75 (75)
12 cd05735 Ig8_DSCAM Eight immuno 99.6 2.4E-14 5.2E-19 77.0 11.3 83 6-93 1-86 (88)
13 cd05723 Ig4_Neogenin Fourth im 99.6 1.1E-14 2.4E-19 75.3 9.3 70 8-87 1-70 (71)
14 cd05867 Ig4_L1-CAM_like Fourth 99.6 1.1E-14 2.4E-19 76.3 9.0 75 6-88 1-75 (76)
15 cd05740 Ig_CEACAM_D4 Fourth im 99.6 1.4E-14 3E-19 78.4 9.3 76 2-88 14-90 (91)
16 cd05744 Ig_Myotilin_C_like Imm 99.6 3.2E-14 7E-19 74.3 9.9 74 9-87 1-74 (75)
17 cd05868 Ig4_NrCAM Fourth immun 99.6 1.6E-14 3.5E-19 75.6 8.7 75 6-88 1-75 (76)
18 cd05728 Ig4_Contactin-2-like F 99.6 2.8E-14 6E-19 76.3 9.4 75 2-87 10-84 (85)
19 cd04972 Ig_TrkABC_d4 Fourth do 99.6 4.7E-14 1E-18 76.2 10.2 79 2-87 11-89 (90)
20 cd05854 Ig6_Contactin-2 Sixth 99.6 8.9E-14 1.9E-18 74.3 11.0 83 7-92 1-85 (85)
21 cd04969 Ig5_Contactin_like Fif 99.6 2.5E-14 5.4E-19 74.4 8.6 72 6-87 1-72 (73)
22 cd05891 Ig_M-protein_C C-termi 99.6 5.8E-14 1.3E-18 76.1 10.3 80 1-86 11-90 (92)
23 cd05857 Ig2_FGFR Second immuno 99.6 3.2E-14 7E-19 76.0 9.0 80 2-87 5-84 (85)
24 cd05748 Ig_Titin_like Immunogl 99.6 6.1E-14 1.3E-18 73.0 9.7 73 8-87 1-73 (74)
25 cd05732 Ig5_NCAM-1_like Fifth 99.6 1.1E-13 2.3E-18 75.6 11.0 84 2-87 12-95 (96)
26 cd05863 Ig2_VEGFR-3 Second imm 99.6 2.3E-14 4.9E-19 73.1 7.6 65 9-88 1-65 (67)
27 cd05724 Ig2_Robo Second immuno 99.6 7.7E-14 1.7E-18 74.6 10.1 78 2-87 7-85 (86)
28 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1.3E-13 2.8E-18 75.5 11.2 82 4-87 15-96 (97)
29 cd05747 Ig5_Titin_like M5, fif 99.6 1E-13 2.2E-18 75.2 10.2 78 2-86 14-91 (92)
30 cd04978 Ig4_L1-NrCAM_like Four 99.6 5.3E-14 1.2E-18 73.6 8.8 75 6-88 1-75 (76)
31 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 3.4E-14 7.4E-19 74.0 7.9 73 9-88 1-73 (74)
32 cd05870 Ig5_NCAM-2 Fifth immun 99.6 1.6E-13 3.4E-18 75.3 10.7 84 2-87 12-97 (98)
33 cd05730 Ig3_NCAM-1_like Third 99.6 1.1E-13 2.3E-18 75.5 9.9 81 2-90 14-94 (95)
34 cd05722 Ig1_Neogenin First imm 99.6 1.7E-13 3.7E-18 74.7 10.7 83 2-87 10-94 (95)
35 cd04968 Ig3_Contactin_like Thi 99.6 8.3E-14 1.8E-18 74.9 9.2 76 2-88 12-87 (88)
36 cd05855 Ig_TrkB_d5 Fifth domai 99.6 1.7E-13 3.7E-18 71.9 9.8 75 11-87 3-77 (79)
37 cd05876 Ig3_L1-CAM Third immun 99.6 6.3E-14 1.4E-18 72.4 8.0 70 9-88 1-70 (71)
38 PF07679 I-set: Immunoglobulin 99.6 3.2E-13 6.9E-18 72.8 10.9 80 2-88 11-90 (90)
39 cd05848 Ig1_Contactin-5 First 99.5 1E-13 2.2E-18 75.5 8.9 74 5-86 18-92 (94)
40 cd05864 Ig2_VEGFR-2 Second imm 99.5 6.7E-14 1.5E-18 72.0 7.7 59 10-79 2-60 (70)
41 cd04976 Ig2_VEGFR Second immun 99.5 9.6E-14 2.1E-18 71.8 8.3 69 9-88 1-69 (71)
42 cd05865 Ig1_NCAM-1 First immun 99.5 3.8E-13 8.3E-18 73.4 10.8 82 2-88 11-95 (96)
43 cd05726 Ig4_Robo Fhird immunog 99.5 3E-13 6.5E-18 73.0 9.9 81 6-91 1-84 (90)
44 cd05746 Ig4_Peroxidasin Fourth 99.5 7.5E-14 1.6E-18 71.8 7.0 68 9-86 1-68 (69)
45 cd04970 Ig6_Contactin_like Six 99.5 3.6E-13 7.9E-18 71.9 9.6 81 7-92 1-85 (85)
46 cd05866 Ig1_NCAM-2 First immun 99.5 4.8E-13 1E-17 72.4 10.1 80 2-88 11-91 (92)
47 cd05850 Ig1_Contactin-2 First 99.5 3.1E-13 6.8E-18 73.5 9.4 74 6-86 19-92 (94)
48 cd05764 Ig_2 Subgroup of the i 99.5 4.5E-13 9.7E-18 69.7 9.3 72 6-87 1-73 (74)
49 cd05856 Ig2_FGFRL1-like Second 99.5 1.6E-13 3.5E-18 72.7 7.3 77 2-87 5-81 (82)
50 cd05743 Ig_Perlecan_D2_like Im 99.5 4.1E-13 8.9E-18 70.6 8.8 69 6-80 1-69 (78)
51 cd05725 Ig3_Robo Third immunog 99.5 1.7E-13 3.7E-18 70.4 7.2 68 9-87 1-68 (69)
52 cd05760 Ig2_PTK7 Second immuno 99.5 7.1E-13 1.5E-17 69.6 9.4 72 9-88 1-74 (77)
53 cd05763 Ig_1 Subgroup of the i 99.5 4.2E-13 9.1E-18 70.0 8.5 73 9-88 1-74 (75)
54 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 1E-12 2.2E-17 69.5 10.0 74 11-86 3-78 (81)
55 cd05849 Ig1_Contactin-1 First 99.5 3.3E-13 7.1E-18 73.3 8.1 72 6-86 19-91 (93)
56 cd05853 Ig6_Contactin-4 Sixth 99.5 9.3E-13 2E-17 70.1 9.3 79 7-92 1-85 (85)
57 cd05773 Ig8_hNephrin_like Eigh 99.5 9E-13 1.9E-17 73.6 9.7 85 5-92 22-108 (109)
58 cd05765 Ig_3 Subgroup of the i 99.5 6.1E-13 1.3E-17 70.3 8.5 77 6-87 1-80 (81)
59 cd04977 Ig1_NCAM-1_like First 99.5 1.4E-12 3E-17 70.7 10.0 80 2-87 11-91 (92)
60 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 1.1E-12 2.5E-17 67.3 9.1 62 6-79 1-62 (69)
61 cd05733 Ig6_L1-CAM_like Sixth 99.5 8E-13 1.7E-17 69.4 8.3 73 9-85 1-75 (77)
62 cd05874 Ig6_NrCAM Sixth immuno 99.5 1.4E-12 3.1E-17 68.4 9.2 74 9-85 1-75 (77)
63 cd05731 Ig3_L1-CAM_like Third 99.5 6.1E-13 1.3E-17 68.6 7.7 70 9-88 1-70 (71)
64 cd05875 Ig6_hNeurofascin_like 99.5 1.9E-12 4E-17 67.9 9.5 73 9-85 1-75 (77)
65 cd05749 Ig2_Tyro3_like Second 99.5 1.7E-12 3.7E-17 68.6 9.0 70 2-85 9-79 (81)
66 cd04973 Ig1_FGFR First immunog 99.5 7.3E-13 1.6E-17 69.8 7.5 67 2-79 5-71 (79)
67 cd05756 Ig1_IL1R_like First im 99.4 9.7E-13 2.1E-17 71.5 7.7 79 2-87 10-93 (94)
68 cd04974 Ig3_FGFR Third immunog 99.4 2E-12 4.4E-17 69.8 8.9 79 6-88 1-89 (90)
69 cd05734 Ig7_DSCAM Seventh immu 99.4 1.2E-12 2.7E-17 68.9 7.8 75 9-87 1-78 (79)
70 cd05758 Ig5_KIRREL3-like Fifth 99.4 7.6E-12 1.7E-16 68.5 11.1 81 2-86 12-97 (98)
71 cd05858 Ig3_FGFR-2 Third immun 99.4 5.1E-12 1.1E-16 68.2 9.9 79 6-88 1-89 (90)
72 cd07702 Ig2_VEGFR-1 Second imm 99.4 3.2E-12 7E-17 66.0 7.9 59 10-77 2-60 (72)
73 cd05729 Ig2_FGFR_like Second i 99.4 1.3E-11 2.8E-16 65.6 10.0 80 2-87 5-84 (85)
74 cd05736 Ig2_Follistatin_like S 99.4 8.3E-12 1.8E-16 65.3 9.0 74 9-89 1-74 (76)
75 cd05750 Ig_Pro_neuregulin Immu 99.4 1.1E-11 2.3E-16 64.6 8.7 68 9-79 1-69 (75)
76 cd04967 Ig1_Contactin First Ig 99.4 7E-12 1.5E-16 67.8 8.1 69 6-82 19-88 (91)
77 cd04979 Ig_Semaphorin_C Immuno 99.4 1.4E-11 3.1E-16 66.3 8.8 80 2-88 7-86 (89)
78 cd05742 Ig1_VEGFR_like First i 99.3 1.7E-11 3.7E-16 65.3 8.4 81 6-88 1-83 (84)
79 cd05882 Ig1_Necl-1 First (N-te 99.3 6.9E-11 1.5E-15 64.3 10.5 75 1-75 7-84 (95)
80 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 2.7E-10 6E-15 60.6 11.0 82 6-89 1-83 (84)
81 cd07701 Ig1_Necl-3 First (N-te 99.3 3.1E-10 6.7E-15 61.8 10.0 76 1-76 7-85 (95)
82 cd05895 Ig_Pro_neuregulin-1 Im 99.2 2.2E-10 4.7E-15 59.8 8.7 69 9-79 1-70 (76)
83 cd05753 Ig2_FcgammaR_like Seco 99.2 8.9E-11 1.9E-15 62.4 7.0 72 2-87 10-82 (83)
84 cd05873 Ig_Sema4D_like Immunog 99.2 1.1E-10 2.4E-15 62.4 7.3 65 2-76 7-71 (87)
85 cd05754 Ig3_Perlecan_like Thir 99.2 8.8E-11 1.9E-15 62.7 6.8 66 2-79 12-78 (85)
86 cd05757 Ig2_IL1R_like Second i 99.2 3.3E-10 7.2E-15 61.3 8.9 68 2-79 6-78 (92)
87 cd05727 Ig2_Contactin-2-like S 99.2 1.7E-10 3.6E-15 62.7 7.7 72 2-79 14-86 (96)
88 cd05871 Ig_Semaphorin_classIII 99.2 4E-10 8.7E-15 60.9 8.8 81 2-88 7-88 (91)
89 KOG3513|consensus 99.2 2E-10 4.3E-15 83.3 9.3 105 3-118 253-359 (1051)
90 cd05898 Ig5_KIRREL3 Fifth immu 99.2 1.1E-09 2.5E-14 59.7 10.3 81 2-86 12-97 (98)
91 cd05845 Ig2_L1-CAM_like Second 99.2 2.1E-10 4.7E-15 62.1 7.1 69 1-77 13-83 (95)
92 cd05752 Ig1_FcgammaR_like Frst 99.2 2.8E-10 6.2E-15 59.7 7.4 66 2-87 11-77 (78)
93 smart00408 IGc2 Immunoglobulin 99.2 6.2E-10 1.3E-14 55.3 8.0 63 5-77 1-63 (63)
94 KOG4221|consensus 99.1 5.2E-10 1.1E-14 81.8 9.5 93 2-103 248-340 (1381)
95 cd05862 Ig1_VEGFR First immuno 99.1 2E-09 4.4E-14 57.6 9.2 83 6-89 1-85 (86)
96 PF13895 Ig_2: Immunoglobulin 99.1 2.1E-09 4.5E-14 56.3 8.9 71 2-88 10-80 (80)
97 cd05885 Ig2_Necl-4 Second immu 99.1 1.7E-09 3.7E-14 56.8 8.2 67 9-79 2-69 (80)
98 KOG4194|consensus 99.1 5.2E-10 1.1E-14 77.3 7.5 89 2-97 623-712 (873)
99 cd07690 Ig1_CD4 First immunogl 99.1 2.5E-09 5.4E-14 58.0 8.4 79 1-79 2-91 (94)
100 KOG3513|consensus 99.0 2.2E-09 4.7E-14 78.1 9.0 84 3-96 438-521 (1051)
101 PF00047 ig: Immunoglobulin do 99.0 3.5E-09 7.5E-14 53.3 7.3 62 6-72 1-64 (64)
102 cd05717 Ig1_Necl-1-3_like Firs 99.0 1.3E-08 2.9E-13 55.3 9.7 76 2-77 8-86 (95)
103 cd05860 Ig4_SCFR Fourth immuno 99.0 2E-08 4.4E-13 54.8 10.1 86 2-89 14-100 (101)
104 smart00409 IG Immunoglobulin. 99.0 5E-08 1.1E-12 51.1 10.8 80 2-88 5-85 (86)
105 smart00410 IG_like Immunoglobu 99.0 5E-08 1.1E-12 51.1 10.8 80 2-88 5-85 (86)
106 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 2.3E-08 4.9E-13 54.8 7.9 72 2-77 11-94 (104)
107 KOG4222|consensus 98.9 7.4E-09 1.6E-13 75.6 7.1 88 2-91 42-130 (1281)
108 cd05872 Ig_Sema4B_like Immunog 98.9 4.9E-08 1.1E-12 51.9 8.2 63 2-75 7-69 (85)
109 PHA02785 IL-beta-binding prote 98.9 9.2E-08 2E-12 63.0 11.2 77 3-79 232-318 (326)
110 cd05897 Ig2_IL1R2_like Second 98.9 5.1E-08 1.1E-12 52.9 8.1 68 3-78 7-80 (95)
111 PHA02826 IL-1 receptor-like pr 98.8 8.3E-08 1.8E-12 60.1 9.8 65 3-76 141-211 (227)
112 PHA02785 IL-beta-binding prote 98.8 3.5E-08 7.7E-13 65.0 8.0 74 4-90 39-118 (326)
113 cd05881 Ig1_Necl-2 First (N-te 98.8 3.2E-07 7E-12 49.8 10.4 75 1-76 7-85 (95)
114 cd05759 Ig2_KIRREL3-like Secon 98.8 3.5E-07 7.6E-12 48.3 9.9 67 8-78 1-71 (82)
115 KOG4222|consensus 98.7 3E-08 6.6E-13 72.5 6.4 92 3-101 143-235 (1281)
116 cd05751 Ig1_LILRB1_like First 98.7 1.8E-07 4E-12 50.5 8.0 77 2-88 12-90 (91)
117 cd05883 Ig2_Necl-2 Second immu 98.7 1.9E-07 4.2E-12 49.2 7.3 79 9-90 2-81 (82)
118 cd00099 IgV Immunoglobulin var 98.7 3.8E-07 8.3E-12 50.3 8.5 77 1-77 1-91 (105)
119 PHA02826 IL-1 receptor-like pr 98.7 2.6E-07 5.7E-12 57.9 8.4 83 2-89 33-133 (227)
120 cd05741 Ig_CEACAM_D1_like Firs 98.7 3.2E-07 6.9E-12 49.4 7.8 76 6-85 1-89 (92)
121 KOG4221|consensus 98.7 2.1E-07 4.6E-12 68.7 8.6 82 2-92 151-232 (1381)
122 cd04984 IgV_L_lambda Immunoglo 98.7 5.4E-07 1.2E-11 49.2 8.4 74 1-75 1-85 (98)
123 cd04983 IgV_TCR_alpha_like Imm 98.7 9.5E-07 2.1E-11 49.1 9.6 76 1-76 8-93 (109)
124 cd05899 IgV_TCR_beta Immunoglo 98.7 5.4E-07 1.2E-11 50.3 8.5 74 1-75 8-94 (110)
125 cd04980 IgV_L_kappa Immunoglob 98.7 7.8E-07 1.7E-11 49.3 9.0 73 2-75 11-93 (106)
126 cd05774 Ig_CEACAM_D1 First imm 98.6 1.2E-06 2.5E-11 48.6 9.3 80 3-86 10-103 (105)
127 cd05714 Ig_CSPGs_LP Immunoglob 98.6 3.3E-06 7.1E-11 46.8 10.2 85 5-90 1-104 (106)
128 cd05877 Ig_LP_like Immunoglobu 98.5 6E-06 1.3E-10 45.7 10.7 85 5-90 1-104 (106)
129 cd05879 Ig_P0 Immunoglobulin ( 98.5 6.4E-06 1.4E-10 46.5 10.3 76 2-78 9-105 (116)
130 cd05878 Ig_Aggrecan_like Immun 98.5 1.2E-05 2.5E-10 45.0 11.0 85 5-90 1-108 (110)
131 cd05900 Ig_Aggrecan Immunoglob 98.5 8.5E-06 1.8E-10 45.7 10.3 34 56-90 77-110 (112)
132 cd07700 IgV_CD8_beta Immunoglo 98.5 8.5E-06 1.8E-10 45.2 9.7 74 1-74 1-93 (107)
133 cd05711 Ig_FcalphaRI Immunoglo 98.4 5.9E-06 1.3E-10 44.9 8.1 65 2-73 11-75 (94)
134 cd05713 Ig_MOG_like Immunoglob 98.4 1.1E-05 2.5E-10 44.0 9.3 33 55-88 67-99 (100)
135 cd04982 IgV_TCR_gamma Immunogl 98.4 5E-06 1.1E-10 46.7 7.8 73 2-74 9-98 (116)
136 cd00098 IgC Immunoglobulin Con 98.4 2.5E-06 5.3E-11 46.2 6.1 71 5-77 12-86 (95)
137 cd05775 Ig_SLAM-CD84_like_N N- 98.3 5.5E-06 1.2E-10 45.2 7.1 83 4-88 2-96 (97)
138 cd05761 Ig2_Necl-1-4_like Seco 98.3 2.2E-05 4.8E-10 41.5 9.2 66 9-78 2-70 (82)
139 KOG4194|consensus 98.3 4.6E-06 1E-10 58.5 8.0 113 4-117 516-639 (873)
140 PF07686 V-set: Immunoglobulin 98.3 1.5E-05 3.2E-10 44.2 8.7 86 2-87 12-113 (114)
141 cd05718 Ig1_PVR_like First imm 98.3 3.8E-05 8.2E-10 41.7 9.7 81 7-88 1-97 (98)
142 cd07694 Ig2_CD4 Second immunog 98.3 2.8E-05 6E-10 41.3 8.3 61 3-75 11-73 (88)
143 cd05880 Ig_EVA1 Immunoglobulin 98.3 4.7E-05 1E-09 42.9 9.9 78 1-78 8-104 (115)
144 cd05755 Ig2_ICAM-1_like Second 98.2 8.4E-06 1.8E-10 44.7 6.4 72 3-79 13-88 (100)
145 PF13927 Ig_3: Immunoglobulin 98.2 1.6E-05 3.6E-10 40.6 7.3 57 9-74 18-75 (75)
146 cd05846 Ig1_MRC-OX-2_like Firs 98.2 4.5E-05 9.8E-10 41.5 9.3 83 6-88 1-96 (97)
147 cd05715 Ig_P0-like Immunoglobu 98.2 6.8E-05 1.5E-09 42.2 10.2 77 2-78 9-105 (116)
148 cd05716 Ig_pIgR Immunoglobulin 98.2 2.7E-05 5.8E-10 42.4 8.3 76 1-76 2-87 (98)
149 cd07705 Ig2_Necl-1 Second immu 98.2 7.4E-05 1.6E-09 39.6 9.7 66 9-78 2-71 (83)
150 cd05902 Ig_Neurocan Immunoglob 98.2 0.00015 3.1E-09 40.6 10.8 36 54-90 73-108 (110)
151 PHA02987 Ig domain OX-2-like p 98.1 8.8E-05 1.9E-09 44.8 9.6 92 2-93 26-126 (189)
152 cd05901 Ig_Versican Immunoglob 98.0 0.00047 1E-08 38.9 11.5 34 56-90 82-115 (117)
153 cd05884 Ig2_Necl-3 Second immu 98.0 0.00022 4.9E-09 37.7 9.1 67 9-78 2-71 (83)
154 cd07706 IgV_TCR_delta Immunogl 98.0 0.00016 3.5E-09 40.6 9.0 74 1-74 9-93 (116)
155 cd05888 Ig1_Nectin-4_like Frst 98.0 0.00032 7E-09 38.4 9.9 33 55-88 66-99 (100)
156 cd04981 IgV_H Immunoglobulin ( 98.0 0.00026 5.6E-09 40.0 9.3 74 1-74 7-97 (117)
157 cd00096 Ig Immunoglobulin doma 97.9 0.00016 3.4E-09 35.7 7.2 66 9-76 1-66 (74)
158 cd05720 Ig_CD8_alpha Immunoglo 97.9 0.00014 3.1E-09 40.1 7.3 72 2-74 2-90 (104)
159 smart00407 IGc1 Immunoglobulin 97.8 0.00038 8.2E-09 36.0 7.5 66 9-76 2-71 (75)
160 cd05887 Ig1_Nectin-3_like Firs 97.8 0.0012 2.6E-08 36.0 10.1 32 56-88 63-95 (96)
161 cd05712 Ig_Siglec_N Immunoglob 97.8 0.00073 1.6E-08 38.2 8.8 73 2-74 10-101 (119)
162 cd07698 IgC_MHC_I_alpha3 Class 97.8 0.00069 1.5E-08 36.6 8.3 68 6-76 14-83 (93)
163 PHA03376 BARF1; Provisional 97.7 0.0021 4.5E-08 39.2 10.3 74 2-76 22-110 (221)
164 cd05886 Ig1_Nectin-1_like Firs 97.7 0.0022 4.7E-08 35.2 10.9 32 56-88 66-98 (99)
165 cd05766 IgC_MHC_II_beta Class 97.6 0.0018 3.8E-08 35.1 8.4 70 4-76 12-83 (94)
166 PF08205 C2-set_2: CD80-like C 97.5 0.0025 5.4E-08 33.9 8.1 70 6-78 14-86 (89)
167 smart00406 IGv Immunoglobulin 97.4 0.0025 5.5E-08 32.9 7.4 64 8-71 1-80 (81)
168 cd05770 IgC_beta2m Class I maj 97.4 0.0026 5.7E-08 34.4 7.5 68 5-76 14-83 (93)
169 cd05771 IgC_Tapasin_R Tapasin- 97.4 0.00059 1.3E-08 39.6 5.3 40 57-97 5-44 (139)
170 cd05771 IgC_Tapasin_R Tapasin- 97.4 0.0022 4.8E-08 37.2 7.6 72 5-76 52-131 (139)
171 cd05889 Ig1_DNAM-1_like First 97.4 0.0057 1.2E-07 33.3 9.2 21 56-76 63-83 (96)
172 cd05767 IgC_MHC_II_alpha Class 97.4 0.0037 8E-08 33.9 7.6 69 5-76 14-84 (94)
173 cd07699 IgC_L Immunoglobulin C 97.3 0.0029 6.4E-08 34.7 6.7 69 5-76 16-89 (100)
174 cd05772 IgC_SIRP Signal-regula 97.2 0.01 2.2E-07 33.3 8.5 30 4-33 19-50 (111)
175 KOG3515|consensus 97.2 0.00042 9E-09 50.1 3.5 79 3-92 19-98 (741)
176 cd05847 IgC_CH2_IgE CH2 domain 97.1 0.0064 1.4E-07 33.0 7.0 68 6-76 14-86 (94)
177 cd07703 Ig2_Nectin-2_like Seco 97.1 0.0018 4E-08 35.2 4.8 65 8-78 17-84 (95)
178 cd05719 Ig2_PVR_like Second im 97.1 0.0028 6.1E-08 34.5 5.5 65 8-78 17-84 (95)
179 cd07704 Ig2_Nectin-3-4_like Se 97.0 0.0039 8.5E-08 34.0 5.6 70 2-77 12-85 (97)
180 cd05768 IgC_CH4 CH4 domain (fo 97.0 0.0046 1E-07 34.1 5.9 70 5-76 15-91 (102)
181 cd07692 Ig_CD3_epsilon Immunog 97.0 0.0019 4.1E-08 32.4 3.7 51 4-74 5-55 (65)
182 PF07654 C1-set: Immunoglobuli 97.0 0.012 2.6E-07 30.9 7.1 69 5-77 7-78 (83)
183 cd07697 IgC_TCR_gamma T cell r 96.8 0.025 5.5E-07 30.8 7.7 66 6-75 16-84 (96)
184 cd07696 IgC_CH3 CH3 domain (th 96.7 0.023 5E-07 30.9 6.8 68 5-76 13-86 (96)
185 cd07689 Ig2_VCAM-1 Second immu 96.6 0.024 5.2E-07 31.0 6.5 31 3-33 12-45 (99)
186 cd05769 IgC_TCR_beta T cell re 96.5 0.061 1.3E-06 30.3 8.2 70 6-78 18-94 (115)
187 cd07691 Ig_CD3_gamma_delta Imm 96.3 0.029 6.3E-07 28.5 5.1 49 6-74 6-54 (69)
188 cd04985 IgC_CH1 CH1 domain (fi 96.0 0.1 2.2E-06 28.3 7.0 67 6-76 16-87 (95)
189 KOG1480|consensus 96.0 0.0043 9.3E-08 45.1 1.7 82 3-93 141-223 (909)
190 cd05721 IgV_CTLA-4 Immunoglobu 95.8 0.15 3.2E-06 28.8 7.9 71 2-72 9-93 (115)
191 PHA02633 hypothetical protein; 95.5 0.083 1.8E-06 26.3 4.6 38 48-90 17-54 (63)
192 PF08204 V-set_CD47: CD47 immu 95.4 0.13 2.9E-06 29.6 6.1 76 6-88 27-119 (130)
193 cd04986 IgC_CH2 CH2 domain (se 94.3 0.32 6.9E-06 26.7 5.5 67 5-77 18-90 (99)
194 PF11465 Receptor_2B4: Natural 94.2 0.5 1.1E-05 26.3 7.1 34 56-89 74-107 (108)
195 PF07354 Sp38: Zona-pellucida- 93.3 0.23 5E-06 32.0 4.3 49 19-76 11-60 (271)
196 PHA03042 CD47-like protein; Pr 92.1 2.2 4.8E-05 27.9 7.5 70 6-89 31-105 (286)
197 KOG4597|consensus 91.7 0.41 8.9E-06 33.5 4.2 73 3-79 208-283 (560)
198 KOG3515|consensus 90.7 2.8 6E-05 31.4 7.7 68 4-75 110-185 (741)
199 PHA02982 hypothetical protein; 87.3 4.5 9.8E-05 25.6 5.9 84 4-88 37-135 (251)
200 PF05790 C2-set: Immunoglobuli 85.4 3.8 8.3E-05 21.5 8.3 13 61-73 51-63 (80)
201 PHA02865 MHC-like TNF binding 84.5 10 0.00022 25.8 7.0 21 8-28 216-238 (338)
202 cd05890 Ig2_Nectin-1_like Seco 83.4 5 0.00011 22.0 4.3 60 9-76 23-87 (98)
203 PHA03052 Hypothetical protein; 83.0 4.6 0.0001 20.5 3.9 31 2-32 8-41 (69)
204 PF06328 Lep_receptor_Ig: Ig-l 75.0 11 0.00024 20.2 7.3 33 2-34 14-51 (89)
205 PHA03270 envelope glycoprotein 57.0 69 0.0015 22.9 7.0 32 3-34 231-265 (466)
206 PHA03271 envelope glycoprotein 47.0 1E+02 0.0023 22.0 6.8 32 3-34 257-291 (490)
207 COG5475 Uncharacterized small 42.8 43 0.00093 16.3 4.1 18 62-79 25-42 (60)
208 PHA03269 envelope glycoprotein 41.0 1.4E+02 0.0031 21.8 6.7 32 3-34 339-373 (566)
209 PHA02914 Immunoglobulin-like d 38.9 84 0.0018 22.3 4.2 36 58-95 86-121 (500)
210 PF02440 Adeno_E3_CR1: Adenovi 38.9 55 0.0012 16.4 5.4 21 3-27 2-22 (63)
211 PF03921 ICAM_N: Intercellular 35.3 78 0.0017 17.2 9.6 77 2-93 14-90 (91)
212 KOG3611|consensus 35.0 1.6E+02 0.0034 22.9 5.4 19 61-79 620-638 (737)
213 PF11049 KSHV_K1: Glycoprotein 33.8 71 0.0015 16.3 3.7 22 10-33 2-23 (71)
214 KOG0613|consensus 29.9 42 0.00091 27.1 1.9 73 3-79 346-419 (1205)
215 PF06832 BiPBP_C: Penicillin-B 29.7 93 0.002 16.3 7.4 54 8-79 31-84 (89)
216 PHA03189 UL14 tegument protein 29.3 1.9E+02 0.0041 19.8 7.8 18 61-78 141-158 (348)
217 PHA03240 envelope glycoprotein 27.6 1.8E+02 0.0038 18.8 5.5 26 2-27 34-59 (258)
218 PF10430 Ig_Tie2_1: Tie-2 Ig-l 27.5 1.1E+02 0.0024 16.6 6.7 67 8-74 17-84 (96)
219 PHA03273 envelope glycoprotein 23.5 3E+02 0.0065 20.1 7.7 31 3-33 247-280 (486)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.72 E-value=2.5e-16 Score=86.34 Aligned_cols=86 Identities=21% Similarity=0.198 Sum_probs=65.9
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.|.|.+.|.|.|.+.|+|+|..+... .......... .....|..+...|.|.|.|.+.|..|.. .
T Consensus 11 ~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~-----~~~~~~~~~~-~s~L~I~~~~~~D~G~Ytc~a~N~~G~~-~ 83 (98)
T cd05762 11 KVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG-----EGIKIENTEN-SSKLTITEGQQEHCGCYTLEVENKLGSR-Q 83 (98)
T ss_pred EEECCCEEEEEEEEcccCCCceEEEECCEEecCC-----CcEEEEecCC-eeEEEECCCChhhCEEEEEEEEcCCCce-e
Confidence 5678999999999999999999999999988632 1122222111 1233467779999999999999999998 5
Q ss_pred eeEEEEEEeeeee
Q psy8666 82 RNATLQVAVVIFF 94 (124)
Q Consensus 82 ~~~~l~v~~~~~~ 94 (124)
..+.|.|...|..
T Consensus 84 ~~~~l~V~~~P~p 96 (98)
T cd05762 84 AQVNLTVVDKPDP 96 (98)
T ss_pred EEEEEEEecCCCC
Confidence 6888988877643
No 2
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.69 E-value=1.3e-15 Score=81.59 Aligned_cols=81 Identities=21% Similarity=0.407 Sum_probs=59.6
Q ss_pred CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
+.+..|+.+.|.|.+.|.|.|.+.|+|++..+.... .......... .....|..+..+|.|.|.|.+.|..|..
T Consensus 5 ~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~----~r~~~~~~~~-~~~L~I~~~~~~D~G~Y~c~a~N~~G~~- 78 (86)
T cd05894 5 IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETE----GRVRVESYKD-LSSFVIEGAEREDEGVYTITVTNPVGED- 78 (86)
T ss_pred EEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCC----CeEEEEEcCC-eEEEEECCCccCcCEEEEEEEEeCCCcE-
Confidence 357889999999999999999999999998775321 1122222111 2334567779999999999999999987
Q ss_pred eeeEEEE
Q psy8666 81 SRNATLQ 87 (124)
Q Consensus 81 ~~~~~l~ 87 (124)
...+.|.
T Consensus 79 ~~~~~l~ 85 (86)
T cd05894 79 HASLFVK 85 (86)
T ss_pred EEEEEEE
Confidence 4555554
No 3
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.69 E-value=6e-16 Score=80.71 Aligned_cols=73 Identities=32% Similarity=0.588 Sum_probs=55.4
Q ss_pred cCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeE
Q psy8666 5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNA 84 (124)
Q Consensus 5 ~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 84 (124)
+|+.+.|.|.+.|.|.|.+.|+|++..+... ........+.+.+ ..++..|.|.|.|.+.|..|.. ...+
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~-----~~~~~~~~~~L~I----~~v~~~D~G~Y~C~A~N~~G~~-~~~~ 70 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD-----RRHLVLSSGTLRI----SRVALHDQGQYECQAVNIVGSQ-RTVA 70 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCC-----CCeEEccCCeEEE----eeCCHHhCEEEEEEEEeCCCce-eEEE
Confidence 5889999999999999999999999876532 1222334444543 4449999999999999999987 4455
Q ss_pred EEE
Q psy8666 85 TLQ 87 (124)
Q Consensus 85 ~l~ 87 (124)
.|.
T Consensus 71 ~L~ 73 (74)
T cd05745 71 QLT 73 (74)
T ss_pred EEe
Confidence 554
No 4
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.67 E-value=2.8e-15 Score=81.34 Aligned_cols=79 Identities=20% Similarity=0.473 Sum_probs=57.8
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+.+|+.+.|.|.+.|.|.|.+.|+|++..+... ...... ..+.. ....|..++.+|.|.|.|.+.|..|..
T Consensus 12 ~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~-----~~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~- 84 (92)
T cd05737 12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS-----DHYNVKVEQGKY-ASLTIKGVSSEDSGKYGIVVKNKYGGE- 84 (92)
T ss_pred EEeCCCcEEEEEEEEecCCCeEEEEECCEECccC-----CCEEEEEcCCCE-EEEEEccCChhhCEEEEEEEEECCCcc-
Confidence 5778999999999999999999999999877532 111121 21222 234467779999999999999999987
Q ss_pred eeeEEEE
Q psy8666 81 SRNATLQ 87 (124)
Q Consensus 81 ~~~~~l~ 87 (124)
...+.+.
T Consensus 85 ~~~~~v~ 91 (92)
T cd05737 85 TVDVTVS 91 (92)
T ss_pred eEEEEEe
Confidence 4444443
No 5
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.67 E-value=2.3e-15 Score=82.83 Aligned_cols=83 Identities=25% Similarity=0.266 Sum_probs=60.0
Q ss_pred EEecCCCEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEcc---CCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666 2 VVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILP---TGSLFFLRVVHGKKEQDGGVYWCLARNSVG 77 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~ 77 (124)
.+..|+.+.|.|.+.| .|.|.+.|+|+|..+.... ....... .........|..++.+|.|.|+|.+.|..|
T Consensus 14 ~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~----~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 14 FVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKL----TEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred EEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCc----ceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 5678999999999999 8999999999998876321 1111111 111122334556699999999999999999
Q ss_pred cceeeeEEEEEE
Q psy8666 78 TAVSRNATLQVA 89 (124)
Q Consensus 78 ~~~~~~~~l~v~ 89 (124)
.. +..+.|.|.
T Consensus 90 ~~-~~t~~L~V~ 100 (101)
T cd04975 90 SK-SLTFELYVN 100 (101)
T ss_pred cE-EEEEEEEEE
Confidence 87 667777764
No 6
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.66 E-value=5.3e-15 Score=81.15 Aligned_cols=87 Identities=62% Similarity=1.099 Sum_probs=61.6
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEc-CCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH-GKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+................+.+....++. .++.+|.|.|.|.+.|..|...
T Consensus 12 ~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~ 91 (100)
T cd07693 12 IVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV 91 (100)
T ss_pred EEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcccccee
Confidence 467899999999999999999999999988764211111222333445444433322 2368999999999999999865
Q ss_pred eeeEEEEE
Q psy8666 81 SRNATLQV 88 (124)
Q Consensus 81 ~~~~~l~v 88 (124)
+..+.|.|
T Consensus 92 s~~~~l~v 99 (100)
T cd07693 92 SRNASLEV 99 (100)
T ss_pred cceEEEEe
Confidence 76776665
No 7
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.66 E-value=3.3e-15 Score=77.98 Aligned_cols=75 Identities=27% Similarity=0.439 Sum_probs=53.3
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 88 (124)
+.|.|.+.|.|.|.+.|+|++..+.... .+..............|..++.+|.|.|.|.+.|..|.. +....|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~----~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNT----DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCC----CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEeC
Confidence 4689999999999999999998775321 122222222221234567779999999999999999988 45666543
No 8
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.65 E-value=1.7e-15 Score=78.71 Aligned_cols=72 Identities=32% Similarity=0.563 Sum_probs=54.7
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT 85 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 85 (124)
|+.+.|.|.+.|.|.|.+.|+|++..+... ........+.+. |..++.+|.|.|.|.+.|..|.. .....
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~-----~r~~~~~~g~L~----I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~ 70 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN-----SRISIWDDGSLE----ILNITKLDEGSYTCFAENNRGKA-NSTGV 70 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccC-----CCEEEcCCCEEE----ECcCChhHCEEEEEEEECCCCce-eEEEE
Confidence 678999999999999999999999865432 233334455543 45669999999999999999988 44555
Q ss_pred EE
Q psy8666 86 LQ 87 (124)
Q Consensus 86 l~ 87 (124)
|.
T Consensus 71 l~ 72 (73)
T cd05852 71 LS 72 (73)
T ss_pred EE
Confidence 54
No 9
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=3.8e-15 Score=80.16 Aligned_cols=76 Identities=30% Similarity=0.479 Sum_probs=57.0
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.|.|.+.|.|.|.+.|+|++..+... .. .......+ .|.+++.+|.|.|.|.+.|..|.. .
T Consensus 12 ~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~-----~~-~~~~~~~L----~I~~v~~~D~G~Y~C~A~N~~G~~-~ 80 (88)
T cd05851 12 YALKGQNVTLECFALGNPVPVIRWRKILEPMPAT-----AE-ISMSGAVL----KIFNIQPEDEGTYECEAENIKGKD-K 80 (88)
T ss_pred EEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC-----CE-EecCCCEE----EECcCChhhCEEEEEEEEcCCCce-E
Confidence 4678999999999999999999999998765421 11 11222333 345669999999999999999987 5
Q ss_pred eeEEEEE
Q psy8666 82 RNATLQV 88 (124)
Q Consensus 82 ~~~~l~v 88 (124)
....|.|
T Consensus 81 ~~~~l~V 87 (88)
T cd05851 81 HQARVYV 87 (88)
T ss_pred EEEEEEE
Confidence 5666655
No 10
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.64 E-value=4.5e-15 Score=81.69 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=58.9
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEcc----CCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILP----TGSLFFLRVVHGKKEQDGGVYWCLARNSVG 77 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~ 77 (124)
.+..|+.+.|.|.+.|.|.|.+.|+|+|..+.... ....... .........|..++.+|.|.|.|.+.|..|
T Consensus 14 ~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~----~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 14 FANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENL----TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred EEecCCcEEEEEEEEEeCCCceEEEECCEECcCCc----ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 35678899999999999999999999999876431 1111101 011112234455699999999999999998
Q ss_pred cceeeeEEEEEE
Q psy8666 78 TAVSRNATLQVA 89 (124)
Q Consensus 78 ~~~~~~~~l~v~ 89 (124)
.. +..+.|.|.
T Consensus 90 ~~-~~t~~l~V~ 100 (101)
T cd05859 90 VK-SYTFALQIQ 100 (101)
T ss_pred eE-EEEEEEEEE
Confidence 87 567777664
No 11
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.64 E-value=7.9e-15 Score=76.56 Aligned_cols=75 Identities=28% Similarity=0.518 Sum_probs=53.3
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 88 (124)
+.|.|.+.|.|.|.+.|+|++..+... .................|..++.+|.|.|.|.+.|..|.. +....|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHN----TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCC----CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEeC
Confidence 468999999999999999999877532 1122222222222234567789999999999999999988 55666543
No 12
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.63 E-value=2.4e-14 Score=77.02 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=61.6
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc---cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL---PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR 82 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~ 82 (124)
|+.+.|.|.+.|.|.+.+.|+|++..+... ...+... ..........|..+..+|.|.|.|.+.|..|.. ..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~----~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~ 75 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPE----MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RG 75 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCC----CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eE
Confidence 788999999999999999999999866421 1111111 122333445567778999999999999999998 67
Q ss_pred eEEEEEEeeee
Q psy8666 83 NATLQVAVVIF 93 (124)
Q Consensus 83 ~~~l~v~~~~~ 93 (124)
.+.|.|..+|.
T Consensus 76 ~~~L~V~~~P~ 86 (88)
T cd05735 76 IIQLTVQEPPD 86 (88)
T ss_pred EEEEEEeCCCC
Confidence 88888877653
No 13
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.63 E-value=1.1e-14 Score=75.31 Aligned_cols=70 Identities=37% Similarity=0.685 Sum_probs=51.8
Q ss_pred CEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ 87 (124)
Q Consensus 8 ~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 87 (124)
.+.|.|.+.|.|.|.++|+|++..+... ........+.+.+. .++.+|.|.|.|.+.|..|.. ...+.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~-----~~~~~~~~~~l~i~----~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPS-----DYFKIVKEHNLQVL----GLVKSDEGFYQCIAENDVGNV-QASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCC-----CCEEEEecCCEEEE----cCCcccCEEEEEEEEcCCCEE-EEEEEEE
Confidence 3689999999999999999999876532 12223334455433 458999999999999999987 4555554
No 14
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.62 E-value=1.1e-14 Score=76.31 Aligned_cols=75 Identities=33% Similarity=0.629 Sum_probs=55.1
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT 85 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 85 (124)
|+.+.|.|.+.|.|.|.++|+|+|..+..... ........+.+ .|..++.+|.|.|.|.+.|..|.. ...+.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~---~~~~~~~~~~L----~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 72 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDP---DPRRHVSSGAL----ILTDVQPSDTAVYQCEARNRHGNL-LANAH 72 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCC---CceEEeeCCEE----EECCCChhhCEEEEEEEECCCCeE-EEEEE
Confidence 67899999999999999999999987653211 11122233444 356669999999999999999987 44566
Q ss_pred EEE
Q psy8666 86 LQV 88 (124)
Q Consensus 86 l~v 88 (124)
|.|
T Consensus 73 l~V 75 (76)
T cd05867 73 VHV 75 (76)
T ss_pred EEE
Confidence 554
No 15
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.61 E-value=1.4e-14 Score=78.35 Aligned_cols=76 Identities=32% Similarity=0.501 Sum_probs=58.5
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+.+|+.+.|.|.+.|. .|.+.|+|++..+... ..... ....+ .|..++.+|.|.|.|.+.|..|...
T Consensus 14 ~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~------~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~N~~G~~~ 82 (91)
T cd05740 14 PPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP------RLQLSNDNRTL----TFNNVTRSDTGHYQCEASNEVSNMT 82 (91)
T ss_pred ccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC------CEEEeCCCCEE----EECcCChhhCEEEEEEEEcCCCCEE
Confidence 46789999999999999 9999999999876521 11122 22333 3456699999999999999999887
Q ss_pred eeeEEEEE
Q psy8666 81 SRNATLQV 88 (124)
Q Consensus 81 ~~~~~l~v 88 (124)
+..+.|.|
T Consensus 83 S~~~~L~V 90 (91)
T cd05740 83 SDPYILNV 90 (91)
T ss_pred eeeEEEEe
Confidence 77777776
No 16
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.61 E-value=3.2e-14 Score=74.31 Aligned_cols=74 Identities=26% Similarity=0.432 Sum_probs=52.5
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ 87 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 87 (124)
+.|.|.+.|.|.|.+.|+|++..+.... ................|..++.+|.|.|.|.+.|..|.. +....|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~----~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNT----DRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCC----CcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence 4689999999999999999998775321 122222222212234567779999999999999999987 4566654
No 17
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.61 E-value=1.6e-14 Score=75.62 Aligned_cols=75 Identities=29% Similarity=0.530 Sum_probs=54.8
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT 85 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 85 (124)
|+.+.|.|.+.|.|.|.+.|+|+|..+..... ..........+ .+..++..|.|.|.|.+.|..|.. ...+.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~---~~~~~~~~~~l----~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~ 72 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPT---DPSRKVDGDTI----IFSKVQERSSAVYQCNASNEYGYL-LANAF 72 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCC---CceEEecCCEE----EECCCCHhhCEEEEEEEEcCCCEE-EEEEE
Confidence 67899999999999999999999987753211 11111222222 345668999999999999999988 55666
Q ss_pred EEE
Q psy8666 86 LQV 88 (124)
Q Consensus 86 l~v 88 (124)
|.|
T Consensus 73 l~v 75 (76)
T cd05868 73 VNV 75 (76)
T ss_pred EEe
Confidence 665
No 18
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.60 E-value=2.8e-14 Score=76.31 Aligned_cols=75 Identities=28% Similarity=0.557 Sum_probs=56.6
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.|.|.+.|.|.|.+.|+|++..+... .. .....+.+.+ ..+..+|.|.|.|.+.|..|.. .
T Consensus 10 ~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~-----~~-~~~~~~~L~i----~~~~~~D~G~Y~C~a~N~~G~~-~ 78 (85)
T cd05728 10 EADIGSSLRWECKASGNPRPAYRWLKNGQPLASE-----NR-IEVEAGDLRI----TKLSLSDSGMYQCVAENKHGTI-Y 78 (85)
T ss_pred EEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC-----Ce-EEEeCCEEEE----eeCCHHHCEEEEEEEECCCCeE-E
Confidence 4678999999999999999999999999876531 11 2223444443 4448999999999999999987 4
Q ss_pred eeEEEE
Q psy8666 82 RNATLQ 87 (124)
Q Consensus 82 ~~~~l~ 87 (124)
..+.|.
T Consensus 79 ~~~~l~ 84 (85)
T cd05728 79 ASAELA 84 (85)
T ss_pred EEEEEE
Confidence 455554
No 19
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.60 E-value=4.7e-14 Score=76.18 Aligned_cols=79 Identities=25% Similarity=0.422 Sum_probs=56.4
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.|.|.+.|.|.|.+.|++++..+... .......... .....|..++..|.|.|.|.+.|..|.. .
T Consensus 11 ~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~-----~~~~~~~~~~-~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~ 83 (90)
T cd04972 11 VVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT-----RTDTLETTVD-IYNLQLSNITSETQTTVTCTAENPVGQA-N 83 (90)
T ss_pred EEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC-----ccEEEEecCC-EEEEEEecCCcccCEEEEEEEECCCCce-e
Confidence 3678999999999999999999999999876532 1111111111 1223456668999999999999999987 4
Q ss_pred eeEEEE
Q psy8666 82 RNATLQ 87 (124)
Q Consensus 82 ~~~~l~ 87 (124)
..+.|.
T Consensus 84 ~~~~L~ 89 (90)
T cd04972 84 VSVQVT 89 (90)
T ss_pred EEEEEe
Confidence 455554
No 20
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.59 E-value=8.9e-14 Score=74.32 Aligned_cols=83 Identities=27% Similarity=0.317 Sum_probs=57.0
Q ss_pred CCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeE
Q psy8666 7 EPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNA 84 (124)
Q Consensus 7 ~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 84 (124)
+++.|.|.+.|.|.| .+.|+|++..+..... .................|.+++..|.|.|.|.+.|..|.. +..+
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~ 77 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKP--NGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASA 77 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCC--CCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEE
Confidence 468999999999987 5799999987753210 1111111111111123456679999999999999999988 6788
Q ss_pred EEEEEeee
Q psy8666 85 TLQVAVVI 92 (124)
Q Consensus 85 ~l~v~~~~ 92 (124)
.|.|..+|
T Consensus 78 ~L~V~~~P 85 (85)
T cd05854 78 TLVVRGPP 85 (85)
T ss_pred EEEEECCC
Confidence 88887754
No 21
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=2.5e-14 Score=74.37 Aligned_cols=72 Identities=38% Similarity=0.652 Sum_probs=54.4
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT 85 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 85 (124)
|+.+.|.|.+.+.|.|.++|+|++..+... ........+.+. |.+++..|.|.|.|.+.|..|.. ...+.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~-----~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~ 70 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNS-----SRICIWPDGSLE----ILNVTKSDEGKYTCFAENFFGKA-NSTGS 70 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccC-----CCEEECCCCeEE----EccCChhHCEEEEEEEECCCCce-EEEEE
Confidence 678999999999999999999999876532 222233444443 45669999999999999999987 44555
Q ss_pred EE
Q psy8666 86 LQ 87 (124)
Q Consensus 86 l~ 87 (124)
|.
T Consensus 71 l~ 72 (73)
T cd04969 71 LS 72 (73)
T ss_pred EE
Confidence 54
No 22
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.59 E-value=5.8e-14 Score=76.12 Aligned_cols=80 Identities=23% Similarity=0.480 Sum_probs=57.0
Q ss_pred CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
+.+.+|+.+.|.|.+.+.|.|.+.|+|++..+.... .... ....+.. ....|..++.+|.|.|.|.+.|..|..
T Consensus 11 v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~---~~~~-~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~N~~G~~- 84 (92)
T cd05891 11 VTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSE---HYSV-KLEQGKY-ASLTIKGVTSEDSGKYSINVKNKYGGE- 84 (92)
T ss_pred EEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCC---CEEE-EEcCCCE-EEEEECCCChhhCEEEEEEEEeCCCce-
Confidence 357889999999999999999999999998765321 1111 1122221 234567779999999999999999887
Q ss_pred eeeEEE
Q psy8666 81 SRNATL 86 (124)
Q Consensus 81 ~~~~~l 86 (124)
...+.|
T Consensus 85 ~~~~~v 90 (92)
T cd05891 85 TVDVTV 90 (92)
T ss_pred eeEEEE
Confidence 334443
No 23
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.59 E-value=3.2e-14 Score=76.00 Aligned_cols=80 Identities=23% Similarity=0.461 Sum_probs=56.4
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.|.|.+.|.|.|.+.|+|+|..+..... ........ . . ....|..+..+|.|.|.|.+.|..|.. .
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~--~~~~~~~~-~-~-~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~ 78 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHR--IGGYKVRN-Q-H-WSLIMESVVPSDKGNYTCVVENEYGSI-N 78 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCc--eeeeEEeC-C-c-eEEEEccCCcccCEEEEEEEEeCCCEE-E
Confidence 467899999999999999999999999988753211 00111111 1 1 112345668999999999999999987 4
Q ss_pred eeEEEE
Q psy8666 82 RNATLQ 87 (124)
Q Consensus 82 ~~~~l~ 87 (124)
..+.|.
T Consensus 79 ~~~~l~ 84 (85)
T cd05857 79 HTYHLD 84 (85)
T ss_pred EEEEEE
Confidence 566654
No 24
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.58 E-value=6.1e-14 Score=73.05 Aligned_cols=73 Identities=29% Similarity=0.457 Sum_probs=52.5
Q ss_pred CEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ 87 (124)
Q Consensus 8 ~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 87 (124)
.+.|.|.+.|.|.|.+.|+|+|..+... .......... .....|..+...|.|.|.|.+.|..|.. +..+.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~-----~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLS-----GRVQIETTAS-STSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCC-----CeEEEEECCC-eEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEE
Confidence 3689999999999999999999887422 1222222221 2233467779999999999999999987 5555554
No 25
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.58 E-value=1.1e-13 Score=75.60 Aligned_cols=84 Identities=24% Similarity=0.399 Sum_probs=57.7
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+.+|+.+.|.|.+.+.|.|.+.|++++..+................ .......|..++..|.|.|.|.+.|..|.. .
T Consensus 12 ~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~ 89 (96)
T cd05732 12 TAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH-ARVSSLTLKDVQLTDAGRYDCEASNRIGGD-Q 89 (96)
T ss_pred eEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCC-ccEEEEEECcCCcCcCEEeEEEEEeCCCCc-E
Confidence 46789999999999999999999999885543211111112222111 122334567779999999999999999987 4
Q ss_pred eeEEEE
Q psy8666 82 RNATLQ 87 (124)
Q Consensus 82 ~~~~l~ 87 (124)
..+.|.
T Consensus 90 ~s~~l~ 95 (96)
T cd05732 90 QSMYLE 95 (96)
T ss_pred EEEEEe
Confidence 555554
No 26
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.58 E-value=2.3e-14 Score=73.08 Aligned_cols=65 Identities=29% Similarity=0.524 Sum_probs=48.7
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 88 (124)
+.|.|.+.|.|.|.++|+|+|+.+... .....+ .|..+..+|.|.|.|.+.|..|.. ...+.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----------~~~~~L----~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----------HSQHSL----QIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----------CCcCEE----EECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence 368999999999999999999877521 112233 346669999999999999999876 34555544
No 27
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.58 E-value=7.7e-14 Score=74.63 Aligned_cols=78 Identities=36% Similarity=0.639 Sum_probs=57.3
Q ss_pred EEecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+..|+++.|.|.+ .+.|.|.+.|+|++..+.... ........+.+.+ ..++..|.|.|.|.+.|..|...
T Consensus 7 ~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~----~~~~~~~~~~L~I----~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 7 QVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDN----ERVRIVDDGNLLI----AEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred EEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCC----CCEEEccCCEEEE----eECCcccCEEEEEEEEeccCcee
Confidence 56789999999997 688999999999998765321 1222233444544 44489999999999999999875
Q ss_pred eeeEEEE
Q psy8666 81 SRNATLQ 87 (124)
Q Consensus 81 ~~~~~l~ 87 (124)
+....|.
T Consensus 79 s~~~~l~ 85 (86)
T cd05724 79 SAAARLS 85 (86)
T ss_pred eeeEEEE
Confidence 6555544
No 28
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.58 E-value=1.3e-13 Score=75.45 Aligned_cols=82 Identities=24% Similarity=0.445 Sum_probs=55.7
Q ss_pred ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeee
Q psy8666 4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRN 83 (124)
Q Consensus 4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 83 (124)
..|+.+.|.|.+.|.|.|.++|++++..+................. ......|..++.+|.|.|.|.+.|..|.. ...
T Consensus 15 ~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~ 92 (97)
T cd05869 15 ELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA-RVSSLTLKYIQYTDAGEYLCTASNTIGQD-SQS 92 (97)
T ss_pred EcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCc-cEEEEEEecCccCcCEEEEEEEecCCCCe-eEE
Confidence 3579999999999999999999998876542211111111111111 11234556778999999999999999988 455
Q ss_pred EEEE
Q psy8666 84 ATLQ 87 (124)
Q Consensus 84 ~~l~ 87 (124)
+.|.
T Consensus 93 ~~l~ 96 (97)
T cd05869 93 MYLE 96 (97)
T ss_pred EEEE
Confidence 5554
No 29
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.57 E-value=1e-13 Score=75.20 Aligned_cols=78 Identities=26% Similarity=0.482 Sum_probs=55.7
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.|.|.+.+.|.|.+.|+|++..+... .......... .....|..++.+|.|.|.|.+.|..|.. .
T Consensus 14 ~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~-----~~~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~ 86 (92)
T cd05747 14 TVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS-----QRHQITSTEY-KSTFEISKVQMSDEGNYTVVVENSEGKQ-E 86 (92)
T ss_pred EEeCCCcEEEEEEEeecCCCEEEEEECCEECCCC-----CcEEEEEcCC-eeEEEECCCCcccCEeEEEEEEcCCCCE-e
Confidence 4678999999999999999999999999876532 1111111111 1223456669999999999999999987 4
Q ss_pred eeEEE
Q psy8666 82 RNATL 86 (124)
Q Consensus 82 ~~~~l 86 (124)
..+.|
T Consensus 87 ~~~~l 91 (92)
T cd05747 87 AQFTL 91 (92)
T ss_pred EEEEe
Confidence 44443
No 30
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.57 E-value=5.3e-14 Score=73.59 Aligned_cols=75 Identities=35% Similarity=0.559 Sum_probs=54.7
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT 85 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 85 (124)
|+.+.|.|.+.|.|.|.+.|+++|..+..... ..........+ .|..++.+|.|.|.|.+.|..|.. ...+.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~---~~~~~~~~~~L----~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~ 72 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPP---DPRRRVDGGTL----ILSNVQPNDTAVYQCNASNVHGYL-LANAF 72 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCC---cceEEccCCEE----EECCCChhhCEEEEEEEEccCCeE-EEeEE
Confidence 67899999999999999999999987764211 11122223333 345668999999999999999887 45666
Q ss_pred EEE
Q psy8666 86 LQV 88 (124)
Q Consensus 86 l~v 88 (124)
|.|
T Consensus 73 l~V 75 (76)
T cd04978 73 VHV 75 (76)
T ss_pred EEE
Confidence 654
No 31
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.57 E-value=3.4e-14 Score=74.05 Aligned_cols=73 Identities=40% Similarity=0.659 Sum_probs=53.3
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 88 (124)
+.|.|.+.|.|.|.++|+|++..+... ..........+.+ .|..++..|.|.|.|.+.|..|...+....|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~---~~~~~~~~~~g~L----~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTT---SNGRIKQLRSGAL----QIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccC---CCCCEEEcCCcEE----EECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 478999999999999999999876521 1122223333433 356668999999999999999987666666665
No 32
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.57 E-value=1.6e-13 Score=75.28 Aligned_cols=84 Identities=25% Similarity=0.413 Sum_probs=55.0
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeC--CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
.+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+.......+........... ....|..++.+|.|.|.|.+.|..|..
T Consensus 12 ~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~-~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 90 (98)
T cd05870 12 TTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGE-SSLHIKDVKLSDSGRYDCEAASRIGGH 90 (98)
T ss_pred EEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCe-eEEEEeeCCcCCCEEEEEEEeccCCcc
Confidence 567899999999999999999999994 43332111111112222111111 123456669999999999999999987
Q ss_pred eeeeEEEE
Q psy8666 80 VSRNATLQ 87 (124)
Q Consensus 80 ~~~~~~l~ 87 (124)
...+.|.
T Consensus 91 -~~~~~l~ 97 (98)
T cd05870 91 -QKSMYLD 97 (98)
T ss_pred -eeEEEEe
Confidence 4455554
No 33
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.57 E-value=1.1e-13 Score=75.49 Aligned_cols=81 Identities=32% Similarity=0.546 Sum_probs=59.7
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.|.|.+.|.|.|.+.|+++|..+... .........+.. ..|..++..|.|.|.|.+.|..|.. .
T Consensus 14 ~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~----~~~~~~~~~~~~---L~I~~v~~~D~G~Y~C~a~N~~G~~-~ 85 (95)
T cd05730 14 TANLGQSVTLACDADGFPEPTMTWTKDGEPIESG----EEKYSFNEDGSE---MTILDVDKLDEAEYTCIAENKAGEQ-E 85 (95)
T ss_pred EEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC----CCEEEEeCCCCE---EEECCCChhhCEEEEEEEEcCCCeE-E
Confidence 4678999999999999999999999999876532 112222222221 2345668999999999999999987 5
Q ss_pred eeEEEEEEe
Q psy8666 82 RNATLQVAV 90 (124)
Q Consensus 82 ~~~~l~v~~ 90 (124)
..+.|.|..
T Consensus 86 ~~~~L~V~~ 94 (95)
T cd05730 86 AEIHLKVFA 94 (95)
T ss_pred EEEEEEEEe
Confidence 677777653
No 34
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.56 E-value=1.7e-13 Score=74.69 Aligned_cols=83 Identities=47% Similarity=0.845 Sum_probs=58.8
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcC-CCccCCeEEEEEeEeC-Cccc
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG-KKEQDGGVYWCLARNS-VGTA 79 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~d~g~y~C~~~~~-~~~~ 79 (124)
.+.+|+++.|.|.+.+.|.|.++|+|+|..+.... .........+.+.+...... .+..|.|.|.|.+.|. .|..
T Consensus 10 ~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 10 VAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVS---DERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred EEcCCCCEEEeeecccCCCCEEEEEECCeECcccc---CcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 35679999999999999999999999998776421 11223334455544433111 1578999999999999 9887
Q ss_pred eeeeEEEE
Q psy8666 80 VSRNATLQ 87 (124)
Q Consensus 80 ~~~~~~l~ 87 (124)
.+..+.|.
T Consensus 87 ~s~~~~l~ 94 (95)
T cd05722 87 VSRTARLT 94 (95)
T ss_pred EEeeeEEe
Confidence 66666654
No 35
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=8.3e-14 Score=74.90 Aligned_cols=76 Identities=29% Similarity=0.478 Sum_probs=56.3
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+.+|+.+.|.|.+.|.|.|.+.|+|++..+... .. .....+.+ .|..++.+|.|.|.|.+.|..|.. .
T Consensus 12 ~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~-----~~-~~~~~~~L----~i~~v~~~D~G~Y~C~a~N~~G~~-~ 80 (88)
T cd04968 12 YALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS-----AE-ISMSGAVL----KIPNIQFEDEGTYECEAENIKGKD-T 80 (88)
T ss_pred EEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc-----cE-EEEeCCEE----EECCCCcccCEEEEEEEEECCCcE-E
Confidence 4678999999999999999999999987654321 11 11233333 345669999999999999999987 4
Q ss_pred eeEEEEE
Q psy8666 82 RNATLQV 88 (124)
Q Consensus 82 ~~~~l~v 88 (124)
....|.|
T Consensus 81 ~~~~l~V 87 (88)
T cd04968 81 HQGRIYV 87 (88)
T ss_pred EEEEEEE
Confidence 5666654
No 36
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.56 E-value=1.7e-13 Score=71.94 Aligned_cols=75 Identities=17% Similarity=0.427 Sum_probs=50.5
Q ss_pred EEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ 87 (124)
Q Consensus 11 l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 87 (124)
+.|.+.|.|.|.++|+|+|..+....+. .................|..+...|.|.|.|.|.|..|+. ...+.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYI-CTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcce-eeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEee
Confidence 6789999999999999999988643110 0011111111222334567778999999999999999987 4454443
No 37
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=6.3e-14 Score=72.45 Aligned_cols=70 Identities=30% Similarity=0.522 Sum_probs=50.6
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 88 (124)
+.|.|.+.|.|.|.+.|+|++..+... ........+.+. |..++..|.|.|.|.+.|..|.. ...+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~-----~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN-----RTKKLNNNKTLQ----LDNVLESDDGEYVCTAENSEGSA-RHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC-----ceeEEcCCCEEE----EcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence 368999999999999999998765421 111222334443 44558999999999999999987 45666655
No 38
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.55 E-value=3.2e-13 Score=72.76 Aligned_cols=80 Identities=35% Similarity=0.647 Sum_probs=59.5
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.|.|.+.+.|.|.+.|++++..+... ........... ....|.+++..|.|.|.|.+.|..|.. .
T Consensus 11 ~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~-----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~~n~~g~~-~ 83 (90)
T PF07679_consen 11 TVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSS-----QRYQIESDGGS-SSLTIKNVTREDAGTYTCVASNSSGEA-T 83 (90)
T ss_dssp EEETTSEEEEEEEEEESSSSEEEEEETTEEEESS-----SSEEEEEETTE-EEEEESSESGGGSEEEEEEEEETTEEE-E
T ss_pred EEeCCCEEEEEEEEEeCCCCcccccccccceeee-----eeeeeecccce-eEEccCCCChhhCEEEEEEEEECCCEE-E
Confidence 5778999999999999999999999999988752 12222222222 233457779999999999999998877 5
Q ss_pred eeEEEEE
Q psy8666 82 RNATLQV 88 (124)
Q Consensus 82 ~~~~l~v 88 (124)
..+.|.|
T Consensus 84 ~~~~l~V 90 (90)
T PF07679_consen 84 ASVNLTV 90 (90)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 5666554
No 39
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.55 E-value=1e-13 Score=75.46 Aligned_cols=74 Identities=39% Similarity=0.739 Sum_probs=52.7
Q ss_pred cCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCC-CccCCeEEEEEeEeCCccceeee
Q psy8666 5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK-KEQDGGVYWCLARNSVGTAVSRN 83 (124)
Q Consensus 5 ~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~d~g~y~C~~~~~~~~~~~~~ 83 (124)
+|+.+.|.|.+.|.|.|.++|+|+|..+.... ........+.+. |..+ ...|.|.|.|.+.|..|...+..
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~----~~~~~~~~g~L~----i~~~~~~~D~G~Y~C~A~N~~G~~~S~~ 89 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTES----DYRYSLIDGNLI----ISNPSEVKDSGRYQCLATNSIGSILSRE 89 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCC----CceEEeeCCeEE----EccCCccCcCEEEEEEEEcCCCeEEecc
Confidence 47889999999999999999999998775321 111222334443 3333 46899999999999999875554
Q ss_pred EEE
Q psy8666 84 ATL 86 (124)
Q Consensus 84 ~~l 86 (124)
+.|
T Consensus 90 ~~l 92 (94)
T cd05848 90 ALL 92 (94)
T ss_pred EEE
Confidence 443
No 40
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.55 E-value=6.7e-14 Score=72.04 Aligned_cols=59 Identities=25% Similarity=0.485 Sum_probs=45.7
Q ss_pred EEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 10 ~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
.|.|.+.|.|.|.+.|+|+|..+... .. ......+ .|..+..+|.|.|.|.+.|..|..
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~-----~~--~~~~~~L----~I~~v~~~D~G~YtC~a~N~~G~~ 60 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLN-----HT--FKRGVHL----TIYEVTEKDAGNYTVVLTNPITKE 60 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCC-----CE--EccCCEE----EECcCCHHHCEEEEEEEEECCCce
Confidence 68999999999999999999987632 11 1122223 456669999999999999999876
No 41
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.55 E-value=9.6e-14 Score=71.76 Aligned_cols=69 Identities=29% Similarity=0.528 Sum_probs=50.2
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 88 (124)
+.|.|.+.|.|.|.+.|+|+|..+... .........+ .|.++...|.|.|.|.+.|..|.. ...+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~------~~~~~~~~~L----~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK------NRTKKSGHSL----TIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC------CEEEcCCCEE----EECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence 368999999999999999999887632 1222333333 345669999999999999999876 34454443
No 42
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.54 E-value=3.8e-13 Score=73.38 Aligned_cols=82 Identities=16% Similarity=0.417 Sum_probs=54.9
Q ss_pred EEecCCCEEEEEeeeccCC-CeEEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC-cc
Q psy8666 2 VVAKNEPVTLNCKAEGKPE-PTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV-GT 78 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~-p~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~-~~ 78 (124)
.+..|+.+.|.|.+.|.|. |.+.|++ ++..+... .................|..++.+|.|.|.|.+.|.. |.
T Consensus 11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~----~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~ 86 (96)
T cd05865 11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPN----QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE 86 (96)
T ss_pred EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcccc----CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence 4667999999999999985 7999998 67654421 0121111111112233456679999999999999997 55
Q ss_pred ceeeeEEEEE
Q psy8666 79 AVSRNATLQV 88 (124)
Q Consensus 79 ~~~~~~~l~v 88 (124)
. ...+.|.|
T Consensus 87 ~-~~s~~l~v 95 (96)
T cd05865 87 S-EATVNVKI 95 (96)
T ss_pred E-EEEEEEEE
Confidence 5 55666554
No 43
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.53 E-value=3e-13 Score=73.04 Aligned_cols=81 Identities=31% Similarity=0.505 Sum_probs=57.2
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccC---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSK---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR 82 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~ 82 (124)
|+.+.|.|.+.+.|.|.+.|+|++....... ............+.+. |.+++.+|.|.|.|.+.|..|.. ..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~-~~ 75 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLT----ITNVQRSDVGYYICQTLNVAGSI-LT 75 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEE----EeeCChhhCEEEEEEEEcCCCce-EE
Confidence 6789999999999999999999886432110 0111222333344443 45559999999999999999987 56
Q ss_pred eEEEEEEee
Q psy8666 83 NATLQVAVV 91 (124)
Q Consensus 83 ~~~l~v~~~ 91 (124)
.+.|.|...
T Consensus 76 ~~~l~V~~~ 84 (90)
T cd05726 76 KAYLEVTDV 84 (90)
T ss_pred EEEEEEeec
Confidence 788887654
No 44
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.53 E-value=7.5e-14 Score=71.79 Aligned_cols=68 Identities=44% Similarity=0.728 Sum_probs=49.8
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATL 86 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 86 (124)
+.|.|.+.|.|.|.+.|+|++..+... ........+.+ .|..++.+|.|.|.|.+.|..|.. +..+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~-----~~~~~~~~~~L----~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTES-----GKFHISPEGYL----AIRDVGVADQGRYECVARNTIGYA-SVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCC-----CCEEECCCCEE----EECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence 468999999999999999999876532 22223334443 355668999999999999999987 444443
No 45
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.53 E-value=3.6e-13 Score=71.95 Aligned_cols=81 Identities=28% Similarity=0.446 Sum_probs=56.6
Q ss_pred CCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEE--EccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666 7 EPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRV--ILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR 82 (124)
Q Consensus 7 ~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~ 82 (124)
+.+.|.|.+.+.|.| .+.|+|+|..+............ ....+.+ .|.+++..|.|.|.|.+.|..|.. +.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~n~~g~~-~~ 75 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDL----MIRNAQLKHAGKYTCTAQTVVDSL-SA 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceE----EEccCCHHhCeeeEEEEecCCCcE-EE
Confidence 468899999999988 56899999887532111101111 1122333 355669999999999999999887 66
Q ss_pred eEEEEEEeee
Q psy8666 83 NATLQVAVVI 92 (124)
Q Consensus 83 ~~~l~v~~~~ 92 (124)
...|.|..+|
T Consensus 76 ~~~l~V~~pP 85 (85)
T cd04970 76 SADLIVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 8888887764
No 46
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.52 E-value=4.8e-13 Score=72.41 Aligned_cols=80 Identities=26% Similarity=0.527 Sum_probs=55.8
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeC-CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+..|+.+.|.|.+.|.|. .+.|+++ +..+... .+......+.. ....|..+..+|.|.|.|.+.|..|...
T Consensus 11 ~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~-----~r~~~~~~g~~-~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 11 ELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS-----QRVVVQKEGVR-SRLTIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC-----CCEEEEeCCCe-eEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence 4678999999999999887 8999984 5544321 12222233321 1223466699999999999999999875
Q ss_pred eeeEEEEE
Q psy8666 81 SRNATLQV 88 (124)
Q Consensus 81 ~~~~~l~v 88 (124)
...+.|.+
T Consensus 84 ~~~i~l~~ 91 (92)
T cd05866 84 EATVVLEI 91 (92)
T ss_pred EEEEEEEE
Confidence 66666654
No 47
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.52 E-value=3.1e-13 Score=73.54 Aligned_cols=74 Identities=39% Similarity=0.643 Sum_probs=52.1
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT 85 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 85 (124)
|+.+.|.|.+.|.|.|.++|+++|..+.... .... ....+.+.+.. .....|.|.|.|.+.|..|...+..+.
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~---~~~~-~~~~g~L~I~~---~~~~~D~G~Y~C~A~N~~G~~~s~~a~ 91 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAP---ESRY-TLVAGNLVINN---PQKARDAGSYQCLAINRCGTVVSREAN 91 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCC---CceE-EEECCeEEEcc---CCccCcCEEEEEEEEcCcCcEEEEEEE
Confidence 4579999999999999999999998875321 1122 22334443222 124689999999999999988665554
Q ss_pred E
Q psy8666 86 L 86 (124)
Q Consensus 86 l 86 (124)
|
T Consensus 92 l 92 (94)
T cd05850 92 L 92 (94)
T ss_pred E
Confidence 4
No 48
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.52 E-value=4.5e-13 Score=69.75 Aligned_cols=72 Identities=38% Similarity=0.734 Sum_probs=51.6
Q ss_pred CCCEEEEEeeeccCCCeEEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeE
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNA 84 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 84 (124)
|+.+.|.|.+.|.|.|.+.|++ ++..+... ........+.+.+.. +...|.|.|.|.+.|..|.. +..+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~-----~~~~~~~~~~L~i~~----~~~~D~G~Y~C~a~N~~G~~-~~~~ 70 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNS-----SRTLVYDNGTLDILI----TTVKDTGSFTCIASNAAGEA-TATV 70 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCC-----CeEEEecCCEEEEEE----CChhhCEEEEEEEECCCCeE-EEEE
Confidence 6789999999999999999997 56554421 122233444554443 48999999999999999887 4555
Q ss_pred EEE
Q psy8666 85 TLQ 87 (124)
Q Consensus 85 ~l~ 87 (124)
.|.
T Consensus 71 ~l~ 73 (74)
T cd05764 71 ELH 73 (74)
T ss_pred EEE
Confidence 554
No 49
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.51 E-value=1.6e-13 Score=72.66 Aligned_cols=77 Identities=23% Similarity=0.425 Sum_probs=54.7
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
....|+.+.|.|.+.+.|.|.+.|+|++..+.... .. .... . .....|..++.+|.|.|.|.+.|..|.. .
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~-----~~-~~~~-~-~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~ 75 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE-----IG-ESRK-K-KWTLSLKNLKPEDSGKYTCHVSNRAGEI-N 75 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc-----cc-eecC-c-eEEEEEccCChhhCEEEEEEEEcCCccE-E
Confidence 45679999999999999999999999988664321 10 1111 1 1123345669999999999999999876 4
Q ss_pred eeEEEE
Q psy8666 82 RNATLQ 87 (124)
Q Consensus 82 ~~~~l~ 87 (124)
..+.|.
T Consensus 76 ~~~~v~ 81 (82)
T cd05856 76 ATYKVD 81 (82)
T ss_pred EEEEEe
Confidence 455543
No 50
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.51 E-value=4.1e-13 Score=70.62 Aligned_cols=69 Identities=32% Similarity=0.485 Sum_probs=50.6
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
|+.+.|.|.+.|.|.|.+.|++++..+... .+......... ....|.+++.+|.|.|.|.+.|..|...
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~-----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 69 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDS-----ARVSITSEGGY-GTLTIRDVKESDQGAYTCEAINTRGMVF 69 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCC-----CCEEEEECCCE-EEEEECCCChHHCEEEEEEEEecCCEEE
Confidence 678999999999999999999998766432 11112222211 2334677799999999999999998873
No 51
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.51 E-value=1.7e-13 Score=70.43 Aligned_cols=68 Identities=32% Similarity=0.561 Sum_probs=49.2
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ 87 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 87 (124)
+.|.|.+.|.|.|.+.|+|++..+.. ..........+ .|..++.+|.|.|.|.+.|..|.. .....|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~------~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK------GRAEILDDKSL----KIRNVTAGDEGSYTCEAENMVGKI-EASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC------CcEEEeeCCEE----EECcCChhHCEEEEEEEEcCCCcE-EEEEEEE
Confidence 46899999999999999999765532 12222233444 345569999999999999999987 4455554
No 52
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.50 E-value=7.1e-13 Score=69.56 Aligned_cols=72 Identities=32% Similarity=0.715 Sum_probs=49.6
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce-eeeEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV-SRNATL 86 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l 86 (124)
+.|.|.+.|.|.|.+.|+|+|..+.... ..... ...+.+. |..++.+|.|.|.|.+.|..|... +..+.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~----~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQ----GNYSVSSKERTLT----LRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCC----ccEEEeCCCCEEE----EeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 4789999999999999999998765321 11112 2223333 445589999999999999998763 234444
Q ss_pred EE
Q psy8666 87 QV 88 (124)
Q Consensus 87 ~v 88 (124)
.|
T Consensus 73 ~v 74 (77)
T cd05760 73 SI 74 (77)
T ss_pred EE
Confidence 44
No 53
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.50 E-value=4.2e-13 Score=70.05 Aligned_cols=73 Identities=36% Similarity=0.605 Sum_probs=49.7
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ 87 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 87 (124)
+.|.|.+.|.|.|.++|+|++....... ........ ..+.+ .|..++.+|.|.|.|.+.|..|.. +..+.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~--~~~~~~~~~~~~~L----~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAA--RERRMHVMPEDDVF----FIVDVKIEDTGVYSCTAQNTAGSI-SANATLT 73 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcc--cccceEEecCCCEE----EEeeCCcccCEEEEEEEEcCCCEE-EeeEEEE
Confidence 4689999999999999999886422110 11111122 22333 345558999999999999999987 5566666
Q ss_pred E
Q psy8666 88 V 88 (124)
Q Consensus 88 v 88 (124)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 5
No 54
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.50 E-value=1e-12 Score=69.53 Aligned_cols=74 Identities=19% Similarity=0.366 Sum_probs=49.4
Q ss_pred EEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc--cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEE
Q psy8666 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL--PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATL 86 (124)
Q Consensus 11 l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 86 (124)
+.|.+.|.|.|.++|+|+|..+..... ........ ..........|..++..|.|.|.|.|.|..|.. ...+.+
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~ 78 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDY-IRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSISA 78 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCc-eeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEEe
Confidence 689999999999999999998764311 00011111 011122234567779999999999999999987 344444
No 55
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.50 E-value=3.3e-13 Score=73.27 Aligned_cols=72 Identities=29% Similarity=0.571 Sum_probs=51.5
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCC-ccCCeEEEEEeEeCCccceeeeE
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK-EQDGGVYWCLARNSVGTAVSRNA 84 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~ 84 (124)
|..+.|.|.+.|.|.|.++|+|++..+.... .. .....+.+. |..+. .+|.|.|.|.+.|..|...+..+
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~----~~-~~~~~g~L~----I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a 89 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTN----DR-YSMVGGNLV----INNPDKYKDAGRYVCIVSNIYGKVRSREA 89 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCC----Ce-EEEECCEEE----ECcCCcCCCCEEEEEEEEeCcceEEEccE
Confidence 3479999999999999999999998764211 12 222344443 33433 58999999999999998766555
Q ss_pred EE
Q psy8666 85 TL 86 (124)
Q Consensus 85 ~l 86 (124)
.|
T Consensus 90 ~l 91 (93)
T cd05849 90 TL 91 (93)
T ss_pred EE
Confidence 44
No 56
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.49 E-value=9.3e-13 Score=70.10 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=56.9
Q ss_pred CCEEEEEeeecc--CCCeEEEEeCCEEeeccCCCCCceEEE----ccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 7 EPVTLNCKAEGK--PEPTIEWYKDGELVETSKSDAKSQRVI----LPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 7 ~~~~l~C~~~~~--p~p~v~w~k~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
+++.|.|.+.+. +.+.+.|+|+|+.+...... ..+.. ...+.+. |.+++..|.|.|+|.+.|..+..
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~--~~~~~~~~~~~~~~L~----I~nv~~~dsG~YtC~a~n~~~~~- 73 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDG--DHFERVGGQDSAGDLM----IRSIQLKHAGKYVCMVQTSVDKL- 73 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCC--ccEEEeccCCCCCcEE----EecCCHHHCEEEEEEEEcccCce-
Confidence 368899998764 46789999999988521100 11212 1234454 45559999999999999999988
Q ss_pred eeeEEEEEEeee
Q psy8666 81 SRNATLQVAVVI 92 (124)
Q Consensus 81 ~~~~~l~v~~~~ 92 (124)
+....|.|..||
T Consensus 74 ~a~a~L~V~~pP 85 (85)
T cd05853 74 SAAADLIVRGPP 85 (85)
T ss_pred EEEEEEEEecCC
Confidence 778999998876
No 57
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.49 E-value=9e-13 Score=73.58 Aligned_cols=85 Identities=21% Similarity=0.340 Sum_probs=57.9
Q ss_pred cCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCc-EEEEEEEcCCC-ccCCeEEEEEeEeCCccceee
Q psy8666 5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGS-LFFLRVVHGKK-EQDGGVYWCLARNSVGTAVSR 82 (124)
Q Consensus 5 ~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~d~g~y~C~~~~~~~~~~~~ 82 (124)
.|..+.|.|.+.|.|.|.+.|+|+|..+.... ..........+. ......|..+. .+|.|.|.|.+.|..|.. ..
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~--~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~ 98 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGN--PRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SL 98 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCC--CeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cE
Confidence 46789999999999999999999998775321 011111111111 11223445555 589999999999999998 56
Q ss_pred eEEEEEEeee
Q psy8666 83 NATLQVAVVI 92 (124)
Q Consensus 83 ~~~l~v~~~~ 92 (124)
.+.|.+..+|
T Consensus 99 ~i~L~~~~~p 108 (109)
T cd05773 99 DIQLVSTSRP 108 (109)
T ss_pred EEEEEecCCC
Confidence 7788776554
No 58
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.49 E-value=6.1e-13 Score=70.33 Aligned_cols=77 Identities=31% Similarity=0.552 Sum_probs=50.4
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEE---eeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGEL---VETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR 82 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~ 82 (124)
|+.+.|.|.+.+.|.|.+.|+|++.. +................+.+ .|..++.+|.|.|.|.+.|..|.. ..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L----~I~~~~~~D~G~Y~C~a~N~~G~~-~~ 75 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQL----VIYNAQPQDAGLYTCTARNSGGLL-RA 75 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEE----EEccCCcccCEEEEEEEecCCceE-EE
Confidence 68899999999999999999997421 11110000011111122233 345669999999999999999987 45
Q ss_pred eEEEE
Q psy8666 83 NATLQ 87 (124)
Q Consensus 83 ~~~l~ 87 (124)
.+.|.
T Consensus 76 ~~~l~ 80 (81)
T cd05765 76 NFPLS 80 (81)
T ss_pred EEEEe
Confidence 66554
No 59
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.48 E-value=1.4e-12 Score=70.68 Aligned_cols=80 Identities=23% Similarity=0.462 Sum_probs=54.2
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+..|+.+.|.|.+.|.| +.+.|++ ++..+... ........+.......|..++.+|.|.|.|.+.|..|...
T Consensus 11 ~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~ 84 (92)
T cd04977 11 EISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQ-----QQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTES 84 (92)
T ss_pred EECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccC-----CCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcc
Confidence 467899999999999986 4899997 56544321 1222222332333445677799999999999999876553
Q ss_pred eeeEEEE
Q psy8666 81 SRNATLQ 87 (124)
Q Consensus 81 ~~~~~l~ 87 (124)
...+.|.
T Consensus 85 ~~sv~l~ 91 (92)
T cd04977 85 EATVNLK 91 (92)
T ss_pred eeEEEEE
Confidence 5555554
No 60
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.48 E-value=1.1e-12 Score=67.33 Aligned_cols=62 Identities=27% Similarity=0.509 Sum_probs=44.4
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
|+.+.|.|.+.|.|.|.+.|+|++..+... .. .......+. |.+ ..|.|.|.|.+.|..|..
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~-----~~-~~~~~~~L~----i~~--~~d~G~Y~C~A~N~~G~~ 62 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE-----DE-MPVGRNVLE----LTN--IYESANYTCVAISSLGMI 62 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCc-----cc-eecCccEEE----Eec--cccCeeEEEEEEeCCCEE
Confidence 678999999999999999999999876421 11 111122222 222 357899999999999986
No 61
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.47 E-value=8e-13 Score=69.36 Aligned_cols=73 Identities=30% Similarity=0.652 Sum_probs=47.7
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCC-CccCCeEEEEEeEeCCccceeeeEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGK-KEQDGGVYWCLARNSVGTAVSRNAT 85 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~-~~~d~g~y~C~~~~~~~~~~~~~~~ 85 (124)
+.|.|.+.|.|.|.++|+|++..+.... ...... ...+.+.+... ... ...|.|.|.|.+.|..|...+..+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~---~~~~~~~~~~g~L~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEK---DPRVTMKPDSGTLVIDNM-NGGRAEDYEGEYQCYASNELGTAISNEIH 75 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCC---CCCEEEeCCCCEEEEecc-CCCCCcCCCEEEEEEEEcCCCcEEccccE
Confidence 4689999999999999999998764321 112222 23444433322 110 2368999999999999987554443
No 62
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.47 E-value=1.4e-12 Score=68.39 Aligned_cols=74 Identities=35% Similarity=0.634 Sum_probs=46.9
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT 85 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 85 (124)
+.|.|.+.|.|.|.++|+|++..+.... ....... ..+.+.+...-......|.|.|.|.+.|..|...+..+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~---~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDK---DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV 75 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcC---CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence 4689999999999999999998764221 1122222 234443322200001247899999999999987554443
No 63
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.47 E-value=6.1e-13 Score=68.63 Aligned_cols=70 Identities=33% Similarity=0.572 Sum_probs=49.5
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 88 (124)
+.|.|.+.|.|.|.+.|+|++..+... ..........+ .|..++.+|.|.|.|.+.|..|.. ...+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-----~~~~~~~~~~L----~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-----RTKFENFNKTL----KIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-----ceeEecCCCEE----EECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 468999999999999999998765421 11111122223 356668999999999999999887 45665554
No 64
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.47 E-value=1.9e-12 Score=67.94 Aligned_cols=73 Identities=30% Similarity=0.646 Sum_probs=47.3
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCC-ccCCeEEEEEeEeCCccceeeeEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKK-EQDGGVYWCLARNSVGTAVSRNAT 85 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~ 85 (124)
+.|.|.+.|.|.|.++|+|++..+... ....... ...+.+.+... .... ..|.|.|.|.+.|..|...+..+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~---~~~~~~~~~~~~~L~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVA---KDPRVSMRRRSGTLVIDFS-GGGRPEDYEGEYQCFARNNLGTALSNKIL 75 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCc---CCCcEEEeCCCceEEEecc-CCCCCCCCCEEEEEEEEeccceEEEEEEE
Confidence 468999999999999999999865421 1112222 23444443322 1112 246899999999999987655443
No 65
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.46 E-value=1.7e-12 Score=68.65 Aligned_cols=70 Identities=30% Similarity=0.537 Sum_probs=50.2
Q ss_pred EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+..|+.+.|.|.+.|.|.| .+.|+|+|..+... . ....+.+.+ . ...|.|.|.|.+.|..|...
T Consensus 9 ~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-----~---~~~~s~L~i----~--~~~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 9 SVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-----P---APSPSVLNV----P--GLNETSKFSCEAHNAKGVTT 74 (81)
T ss_pred EEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-----C---CCCCCEEEE----c--cccCCeEEEEEEEeccCcEE
Confidence 56789999999999999999 69999999876521 0 011122222 1 23578999999999999775
Q ss_pred eeeEE
Q psy8666 81 SRNAT 85 (124)
Q Consensus 81 ~~~~~ 85 (124)
+....
T Consensus 75 s~~a~ 79 (81)
T cd05749 75 SRTGT 79 (81)
T ss_pred eeeEE
Confidence 54443
No 66
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.46 E-value=7.3e-13 Score=69.85 Aligned_cols=67 Identities=18% Similarity=0.458 Sum_probs=50.0
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
.+..|+.+.|.|.+.+. .+.+.|+|+|..+... .... .....+ .|..++.+|.|.|.|.+.|..|..
T Consensus 5 ~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~-----~~~~-~~~~~L----~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 5 SAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN-----NRTR-ITGEEV----QIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred EecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC-----ceEE-EeCCEE----EECCCChhhCEEEEEEEeCCCCcc
Confidence 46789999999999885 5789999999877532 1211 222323 456669999999999999988776
No 67
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.45 E-value=9.7e-13 Score=71.53 Aligned_cols=79 Identities=24% Similarity=0.411 Sum_probs=54.2
Q ss_pred EEecCCCEEEEEeeec-----cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 2 VVAKNEPVTLNCKAEG-----KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~-----~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
.+.+|+.+.|.|.+.+ .|.|.+.|||++..+.... ....+.....+.+. |..+..+|.|.|.|.+.|..
T Consensus 10 ~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~--~~~~r~~~~~~~L~----I~~~~~~DsG~Y~C~~~N~~ 83 (94)
T cd05756 10 YVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT--EERSRMHQQKDLLW----FLPAALEDSGLYTCVVRNST 83 (94)
T ss_pred EEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc--cccceeeecCCeEE----EccCCcccCeEEEEEEcCCC
Confidence 3568999999999988 6889999999986543211 01111222233333 45559999999999999998
Q ss_pred ccceeeeEEEE
Q psy8666 77 GTAVSRNATLQ 87 (124)
Q Consensus 77 ~~~~~~~~~l~ 87 (124)
|.. ...+.|.
T Consensus 84 g~~-~~~~~L~ 93 (94)
T cd05756 84 YCM-KVSISLT 93 (94)
T ss_pred ccE-EEEEEEE
Confidence 876 3455554
No 68
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.45 E-value=2e-12 Score=69.76 Aligned_cols=79 Identities=25% Similarity=0.382 Sum_probs=51.1
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCC----EEeeccCCCCCceEEEc------cCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDG----ELVETSKSDAKSQRVIL------PTGSLFFLRVVHGKKEQDGGVYWCLARNS 75 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g----~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~d~g~y~C~~~~~ 75 (124)
|+.+.|.|.+.|.|.|.++|+|++ ..+.... ........ ...... ...|.+++.+|.|.|.|.+.|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDG--LPYVTVLKVAGINTTDNESE-VLYLRNVSFDDAGEYTCLAGNS 77 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCC--CceEEEEEecCCcccccccc-eEEEeccccccCcEEEEEeecc
Confidence 678999999999999999999963 2221100 00000000 001111 1234566899999999999999
Q ss_pred CccceeeeEEEEE
Q psy8666 76 VGTAVSRNATLQV 88 (124)
Q Consensus 76 ~~~~~~~~~~l~v 88 (124)
.|.. ...+.|.|
T Consensus 78 ~G~~-~~sa~L~V 89 (90)
T cd04974 78 IGPS-HHSAWLTV 89 (90)
T ss_pred cCcc-cCCEEEEe
Confidence 9988 55777765
No 69
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.44 E-value=1.2e-12 Score=68.93 Aligned_cols=75 Identities=36% Similarity=0.588 Sum_probs=49.4
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEe-eccC-C-CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELV-ETSK-S-DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT 85 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 85 (124)
+.|.|.+.|.|.|.+.|+|++... .... . ....+......+.+. |..+..+|.|.|.|.+.|..|...+..+.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLL----IKHVLEEDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEE----ECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence 468999999999999999964321 1100 0 011222223344443 45558999999999999999987666666
Q ss_pred EE
Q psy8666 86 LQ 87 (124)
Q Consensus 86 l~ 87 (124)
|.
T Consensus 77 l~ 78 (79)
T cd05734 77 LT 78 (79)
T ss_pred Ee
Confidence 54
No 70
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.44 E-value=7.6e-12 Score=68.55 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=55.4
Q ss_pred EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEcc---CCcEEEEEEEcCCCccC-CeEEEEEeEeCC
Q psy8666 2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILP---TGSLFFLRVVHGKKEQD-GGVYWCLARNSV 76 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~d-~g~y~C~~~~~~ 76 (124)
.+..|+.+.|.|.+.|.|.| .+.|++++..+.... ...+.... .........|..++.+| .|.|.|.+.|..
T Consensus 12 ~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~---~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 12 YAILGDKGRVECFIFSTPPPDRIVWTWKENELESGS---SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred EEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCC---CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 36789999999999999999 599999998765321 01121111 12222344567778745 899999999999
Q ss_pred ccceeeeEEE
Q psy8666 77 GTAVSRNATL 86 (124)
Q Consensus 77 ~~~~~~~~~l 86 (124)
|.. ...+.|
T Consensus 89 G~~-~~~~~L 97 (98)
T cd05758 89 GSG-TAIISL 97 (98)
T ss_pred Ccc-cEEEEe
Confidence 987 334443
No 71
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.44 E-value=5.1e-12 Score=68.22 Aligned_cols=79 Identities=28% Similarity=0.437 Sum_probs=52.3
Q ss_pred CCCEEEEEeeeccCCCeEEEEeC----CEEeeccCCCCCceEEEccCC------cEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKD----GELVETSKSDAKSQRVILPTG------SLFFLRVVHGKKEQDGGVYWCLARNS 75 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~----g~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~d~g~y~C~~~~~ 75 (124)
|+.+.|.|.+.+.|.|.++|+|+ |..+.... .......... .......|..++.+|.|.|.|.+.|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDG---LPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS 77 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCC---CeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence 67899999999999999999984 33322110 0011111111 01123456777999999999999999
Q ss_pred CccceeeeEEEEE
Q psy8666 76 VGTAVSRNATLQV 88 (124)
Q Consensus 76 ~~~~~~~~~~l~v 88 (124)
.|.. .....|.|
T Consensus 78 ~G~~-~~~a~L~V 89 (90)
T cd05858 78 IGIS-HHSAWLTV 89 (90)
T ss_pred CCcc-cceEEEEE
Confidence 9987 55666665
No 72
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.41 E-value=3.2e-12 Score=66.01 Aligned_cols=59 Identities=29% Similarity=0.389 Sum_probs=43.5
Q ss_pred EEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666 10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG 77 (124)
Q Consensus 10 ~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~ 77 (124)
.|.|.+.|.|.|.+.|+|++..+... ..........+ .|.+++.+|.|.|.|.+.+...
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~-----~~~~~~~~~~L----~I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEK-----CSRYHVDGYSL----VIKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCC-----CcEEEeCCCEE----EECcCCHHHCEEEEEEEEcccc
Confidence 68999999999999999999876532 11122222233 4566699999999999999743
No 73
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.40 E-value=1.3e-11 Score=65.65 Aligned_cols=80 Identities=25% Similarity=0.478 Sum_probs=54.3
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.|.|.+.+.|.+.+.|++++..+.... ........... ....|..+..+|.|.|.|.+.|..|.. .
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~----~~~~~~~~~~~-~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~ 78 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEH----RIGGYKVRKKK-WTLILESVVPSDSGKYTCIVENKYGSI-N 78 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccC----ceeEEEccCcE-EEEEEeECCcccCEEEEEEEEECCceE-E
Confidence 46789999999999999999999999988765321 00001111111 122344558999999999999998876 4
Q ss_pred eeEEEE
Q psy8666 82 RNATLQ 87 (124)
Q Consensus 82 ~~~~l~ 87 (124)
..+.|.
T Consensus 79 ~~~~l~ 84 (85)
T cd05729 79 HTYKVD 84 (85)
T ss_pred EEEEEe
Confidence 455544
No 74
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.40 E-value=8.3e-12 Score=65.26 Aligned_cols=74 Identities=30% Similarity=0.567 Sum_probs=52.6
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 88 (124)
+.|.|.+.|.|.|.+.|+|++..+.... .........+. ...|..++..|.|.|.|.+.|..|.. ...+.|.|
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~---~~~~~~~~~~~---~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKL---SKQLTLIANGS---ELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCC---CccEEEeCCCC---EEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEE
Confidence 3689999999999999999998765321 11222222222 12345668999999999999999988 45777766
Q ss_pred E
Q psy8666 89 A 89 (124)
Q Consensus 89 ~ 89 (124)
.
T Consensus 74 ~ 74 (76)
T cd05736 74 E 74 (76)
T ss_pred E
Confidence 4
No 75
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.38 E-value=1.1e-11 Score=64.59 Aligned_cols=68 Identities=24% Similarity=0.427 Sum_probs=47.1
Q ss_pred EEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 9 VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 9 ~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
+.|.|.+.+ .|.|.+.|+|++..+...... ........ .......|..++.+|.|.|.|.+.|..|..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~--~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKP--RNIKIRNK-KKNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCc--ceEEEEec-CceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 368999998 899999999999877642110 11111111 112233456779999999999999999886
No 76
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.38 E-value=7e-12 Score=67.78 Aligned_cols=69 Identities=39% Similarity=0.717 Sum_probs=48.3
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCC-ccCCeEEEEEeEeCCccceee
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK-EQDGGVYWCLARNSVGTAVSR 82 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~d~g~y~C~~~~~~~~~~~~ 82 (124)
|..+.|.|.+.|.|.|.++|+|++..+.... .... ....+.+.+ ..+. ..|.|.|.|.+.|..|...+.
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~---~~~~-~~~~~~L~i----~~~~~~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEP---DSRY-SLVGGNLVI----SNPSKAKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCC---CCCE-EEECCEEEE----ecCCccCCCEEEEEEEEcCCCEEEec
Confidence 4569999999999999999999998774221 1111 223344432 3334 489999999999999987543
No 77
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.37 E-value=1.4e-11 Score=66.29 Aligned_cols=80 Identities=19% Similarity=0.384 Sum_probs=54.3
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.|.|...+ |.+.+.|+|++..+..... ...........+. |..++.+|.|.|.|.+.+..+....
T Consensus 7 ~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 7 TVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE--PEERLLVTEDGLL----IRSVSPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred EEECCCcEEEEEeCCC-CCceEEEEECCcccccccC--cCceEEEcCCCEE----EccCCHHHCEEEEEEEecCccceeE
Confidence 4678999999999877 8889999999876543210 0111222233333 4566999999999999987665545
Q ss_pred eeEEEEE
Q psy8666 82 RNATLQV 88 (124)
Q Consensus 82 ~~~~l~v 88 (124)
....|.|
T Consensus 80 ~~~~l~V 86 (89)
T cd04979 80 ATYSLNV 86 (89)
T ss_pred eEEEEEE
Confidence 5555555
No 78
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.35 E-value=1.7e-11 Score=65.29 Aligned_cols=81 Identities=17% Similarity=0.291 Sum_probs=53.5
Q ss_pred CCCEEEEEeeecc--CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeee
Q psy8666 6 NEPVTLNCKAEGK--PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRN 83 (124)
Q Consensus 6 G~~~~l~C~~~~~--p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 83 (124)
|+.+.|.|.+.+. |.|.+.|.+++..+....... ................|.+++.+|.|.|.|.+.|..+.. +..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMV-TRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEee-cccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEE
Confidence 7889999999998 788999998776543210000 000111111223345567889999999999999998876 455
Q ss_pred EEEEE
Q psy8666 84 ATLQV 88 (124)
Q Consensus 84 ~~l~v 88 (124)
..+.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 55544
No 79
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.34 E-value=6.9e-11 Score=64.34 Aligned_cols=75 Identities=15% Similarity=0.240 Sum_probs=49.9
Q ss_pred CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCC---CCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD---AKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS 75 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~ 75 (124)
+.+..|+++.|.|.+.+.|.|.+.|+|++..+...... .+.+..............|.+++.+|.|.|.|.+...
T Consensus 7 ~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 7 ETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred EEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 35789999999999999999999999987643211000 0111111122222234456888999999999998883
No 80
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.29 E-value=2.7e-10 Score=60.65 Aligned_cols=82 Identities=21% Similarity=0.358 Sum_probs=52.8
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc-cceeeeE
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG-TAVSRNA 84 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~-~~~~~~~ 84 (124)
|+++.|.|.+.+.|.+.+.|+++++...... ..................|..++.+|.|.|.|.+.|... ...+..+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGI--PEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCc--eEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 7899999999999999999998775422110 000011112222334456678899999999999998765 2224555
Q ss_pred EEEEE
Q psy8666 85 TLQVA 89 (124)
Q Consensus 85 ~l~v~ 89 (124)
.|.|.
T Consensus 79 ~i~V~ 83 (84)
T cd05861 79 NITVH 83 (84)
T ss_pred EEEEe
Confidence 65553
No 81
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.25 E-value=3.1e-10 Score=61.83 Aligned_cols=76 Identities=11% Similarity=0.185 Sum_probs=48.6
Q ss_pred CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccC---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
+.+.+|+++.|.|.+.+.|.|.+.|++.+..+.... ...+.++.............|..++.+|.|.|.|.+.+..
T Consensus 7 v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 7 VTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred EEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence 357899999999999999999999997543321100 0011222211111111233467889999999999999853
No 82
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.24 E-value=2.2e-10 Score=59.85 Aligned_cols=69 Identities=17% Similarity=0.391 Sum_probs=45.1
Q ss_pred EEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 9 VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 9 ~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
+.|.|.+.+ .|.+.+.|+|+|+.+..... ............ .....|..++..|.|.|.|.+.|..|..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~-~~~~~~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNK-PDNKIKIRKKKK-SSELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCC-CCceEEEEeCCc-EEEEEECcCCcccCEEEEEEEEeCCCce
Confidence 368999764 57789999999987653211 111111111111 1223456779999999999999999876
No 83
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.23 E-value=8.9e-11 Score=62.40 Aligned_cols=72 Identities=25% Similarity=0.397 Sum_probs=51.8
Q ss_pred EEecCCCEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+.+|+++.|.|.... .+.+.+.|+|+|..+... .....+. |..++.+|.|.|.|.+.+..+...
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----------~~~~~l~----I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----------HSNSNLS----IPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----------CCCceEE----ECccCHHHCEEEEEEEEeCCceec
Confidence 4678999999999854 566789999999755311 1122332 445589999999999999988665
Q ss_pred eeeEEEE
Q psy8666 81 SRNATLQ 87 (124)
Q Consensus 81 ~~~~~l~ 87 (124)
+..+.|.
T Consensus 76 s~~~~i~ 82 (83)
T cd05753 76 SEPVSIT 82 (83)
T ss_pred CCCEEEE
Confidence 6665554
No 84
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.23 E-value=1.1e-10 Score=62.35 Aligned_cols=65 Identities=22% Similarity=0.455 Sum_probs=48.2
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
.+..|+++.|.|.+.+ +.+.+.|+++|..+... ........+.+. |.+++..|.|.|.|.+.+..
T Consensus 7 ~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~-----~~r~~~~~~~L~----I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 7 TFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE-----SAKYLLYRDGLL----IFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EEECCCCEEEEEECCC-CCCeEEEEECCEECCCC-----CceEEEECCcEE----EeCCCHHHCEEEEEEEEecc
Confidence 4678999999999754 67889999999987632 112233445553 45569999999999998864
No 85
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.22 E-value=8.8e-11 Score=62.66 Aligned_cols=66 Identities=24% Similarity=0.434 Sum_probs=49.1
Q ss_pred EEecCCCEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 2 VVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
.+..|+.++|.|.+.+ .|.+.+.|++++..+... .....+.+ .|..++.+|.|.|.|.+.|..|..
T Consensus 12 ~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--------~~~~~~~L----~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 12 EVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--------AMDFNGIL----TIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred EEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--------ccccCCEE----EECCCCHHHCEEEEEEEeccCCeE
Confidence 4678999999999864 688899999988654311 11112333 456669999999999999998877
No 86
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.21 E-value=3.3e-10 Score=61.29 Aligned_cols=68 Identities=21% Similarity=0.438 Sum_probs=49.0
Q ss_pred EEecCCCEEEEEeeec-----cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 2 VVAKNEPVTLNCKAEG-----KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~-----~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
.+..|....|.|...+ .|.|.+.|||++..+... .. .....+.+. |..+..+|.|.|.|.+.|..
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~-----~~-~~~~~~~L~----I~~v~~~DsG~YtC~~~n~~ 75 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD-----RK-RFVKGSKLL----IQNVTEEDAGNYTCKLTFTH 75 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC-----cc-EEecCCEEE----EeeCChhhCEEEEEEEEecC
Confidence 4668999999998643 257899999999887632 11 122444454 44559999999999999987
Q ss_pred ccc
Q psy8666 77 GTA 79 (124)
Q Consensus 77 ~~~ 79 (124)
+..
T Consensus 76 ~~~ 78 (92)
T cd05757 76 NGK 78 (92)
T ss_pred CCE
Confidence 665
No 87
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.21 E-value=1.7e-10 Score=62.65 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=52.7
Q ss_pred EEecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 2 ~~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
.+.+|+.+.|.|.. .+.|.|.+.|++++..+.... ..........+.+.+..+ +..|.|.|.|.+.|.....
T Consensus 14 ~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~--d~r~~~~~~~G~L~fs~v----~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 14 KVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPE--DGRRFVSQTNGNLYIAKV----EASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeCCcEEEeeCCCCCCCCCEEEEEECCccccccc--CCCeEEeCCCCcEEEeec----CHhhCceeEEEEEecccCC
Confidence 46789999999974 688999999999986532111 112233344688877766 8999999999999976443
No 88
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.20 E-value=4e-10 Score=60.88 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=47.7
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe-CCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN-SVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~-~~~~~~ 80 (124)
...+|+.+.|.|.. +.|.|.+.|||+....................+.+. |..++.+|.|.|.|.+.+ ..+..
T Consensus 7 ~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~----I~~~~~~DsG~Y~C~a~~~~~~~~- 80 (91)
T cd05871 7 YGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLL----LRSLQRSDAGVYTCTAVEHSFSQT- 80 (91)
T ss_pred EEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEE----EeeCChhHCEEEEEEEEccCCeEE-
Confidence 46789999999996 478899999984321110000000111122333443 455599999999999985 44333
Q ss_pred eeeEEEEE
Q psy8666 81 SRNATLQV 88 (124)
Q Consensus 81 ~~~~~l~v 88 (124)
.....|.|
T Consensus 81 ~~~~~l~v 88 (91)
T cd05871 81 LAKYTLHV 88 (91)
T ss_pred EEEEEEEE
Confidence 23444444
No 89
>KOG3513|consensus
Probab=99.19 E-value=2e-10 Score=83.29 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=73.5
Q ss_pred EecCCCEEEEEeeeccCCCeEEEEeCCEE-eeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGEL-VETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
...|+.+.|.|.+.|.|.|.+.|.|.+.. +.. ..........+. |.+++.+|.|.|.|.+.|..|.. .
T Consensus 253 a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~------r~~~~~~~~vL~----I~nv~~~D~G~Y~C~AeN~~G~~-~ 321 (1051)
T KOG3513|consen 253 ALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR------RATYSNYGKVLK----IPNVQYEDAGEYECIAENSRGSA-T 321 (1051)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc------ceeeeccccEEE----ecccCcCCCeEEEEEEecccccc-e
Confidence 45799999999999999999999997763 321 111122223333 35569999999999999999977 7
Q ss_pred eeEEEEEEeeeeeeeeccceehhhhh-heeeeeecCcc
Q psy8666 82 RNATLQVAVVIFFISFFRFKLSAYLY-DLFRGVVNKTN 118 (124)
Q Consensus 82 ~~~~l~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 118 (124)
....+.|..+|.+...++-...+.-. ..|+|+.+|..
T Consensus 322 ~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P 359 (1051)
T KOG3513|consen 322 HSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKP 359 (1051)
T ss_pred eeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCC
Confidence 78899999999877655543332211 23666666543
No 90
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.19 E-value=1.1e-09 Score=59.74 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=54.5
Q ss_pred EEecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEEEc---cCCcEEEEEEEcCCCccC-CeEEEEEeEeCC
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVIL---PTGSLFFLRVVHGKKEQD-GGVYWCLARNSV 76 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~d-~g~y~C~~~~~~ 76 (124)
.+..|+.+.|.|.+.+.|.|. +.|..++..+.... ...+... ........+.|.++...| .|.|.|.+.|.+
T Consensus 12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~---~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 12 YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGT---SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCC---CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 356899999999998888874 68988776554321 1122221 223345555667777666 689999999999
Q ss_pred ccceeeeEEE
Q psy8666 77 GTAVSRNATL 86 (124)
Q Consensus 77 ~~~~~~~~~l 86 (124)
|.. ...+.|
T Consensus 89 G~d-~~~i~L 97 (98)
T cd05898 89 GSG-TAIIQL 97 (98)
T ss_pred ccc-eEEEEe
Confidence 988 344443
No 91
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.18 E-value=2.1e-10 Score=62.11 Aligned_cols=69 Identities=26% Similarity=0.383 Sum_probs=53.8
Q ss_pred CEEecCCCEEEEEe-eeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCe-EEEEEeEeCCc
Q psy8666 1 MVVAKNEPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG-VYWCLARNSVG 77 (124)
Q Consensus 1 v~~~~G~~~~l~C~-~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g-~y~C~~~~~~~ 77 (124)
+.+.+|+.+.|.|. ..|.|.|.+.|++++..... .+.+......+.+.+.++ +..|.| .|.|.+.|...
T Consensus 13 v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~----~~~Ri~~~~~GnL~fs~v----~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 13 VEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT----QDERVSMGQNGNLYFANV----EEQDSHPDYICHAHFPGL 83 (95)
T ss_pred eEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc----ccccEEECCCceEEEEEE----ehhhCCCCeEEEEEcccc
Confidence 35778999999997 68999999999987654332 224455566788887777 899999 89999999763
No 92
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.18 E-value=2.8e-10 Score=59.73 Aligned_cols=66 Identities=33% Similarity=0.664 Sum_probs=46.7
Q ss_pred EEecCCCEEEEEeeeccCC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+.+|+.+.|.|.+.+.|. +.+.|+|+|..+.. ....+ .|..+ .+|.|.|.|.+.+. ..
T Consensus 11 ~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------------~~~~l----~i~~~-~~dsG~Y~C~a~~~---~~ 70 (78)
T cd05752 11 TIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------------TTNSY----RIRAA-NNDSGEYRCQTQGS---SL 70 (78)
T ss_pred EeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------------cCCeE----EEeec-ccCCEEeEEECCCC---cC
Confidence 3568999999999988775 46999999987631 11222 23445 88999999999875 22
Q ss_pred eeeEEEE
Q psy8666 81 SRNATLQ 87 (124)
Q Consensus 81 ~~~~~l~ 87 (124)
+..+.|.
T Consensus 71 S~~v~l~ 77 (78)
T cd05752 71 SDPVHLE 77 (78)
T ss_pred CCCEEEe
Confidence 4455554
No 93
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.16 E-value=6.2e-10 Score=55.34 Aligned_cols=63 Identities=40% Similarity=0.707 Sum_probs=45.1
Q ss_pred cCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666 5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG 77 (124)
Q Consensus 5 ~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~ 77 (124)
+|+.+.|.|.+.+.|.+.+.|++++..+.. ..........+.+. .++..|.|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~------~~~~~~~~~~L~i~----~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE------SNRLSASGSTLTIK----SVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC------CCEEecCCcEEEEe----eCCcccCEEEEEEEecCCC
Confidence 478899999988888899999998876551 11122233344433 4488999999999988653
No 94
>KOG4221|consensus
Probab=99.14 E-value=5.2e-10 Score=81.76 Aligned_cols=93 Identities=25% Similarity=0.457 Sum_probs=69.2
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
++..|+.+.|.|.+.+.|.|.+.|.|+|..+.-. +........+.+.+..+ +..|.|.|+|.+.|..... .
T Consensus 248 ~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~d----s~rivl~g~~slliS~a----~~~dSg~YtC~Atn~~D~i-d 318 (1381)
T KOG4221|consen 248 VVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVD----SYRIVLVGGSSLLISNA----TDDDSGKYTCRATNTNDSI-D 318 (1381)
T ss_pred ccccCCcEEEEEEecCCCCCceEEeeCCeeeeec----ceEEEEecccceEEecc----ccccCceEEEEecCCCccc-c
Confidence 4678999999999999999999999999887732 13334444556654444 8899999999999944333 3
Q ss_pred eeEEEEEEeeeeeeeeccceeh
Q psy8666 82 RNATLQVAVVIFFISFFRFKLS 103 (124)
Q Consensus 82 ~~~~l~v~~~~~~~~~~~~~~~ 103 (124)
....+.|..+|.+...+.....
T Consensus 319 asaev~V~a~P~~~~~p~~l~A 340 (1381)
T KOG4221|consen 319 ASAEVTVLAPPGFTKAPTTLVA 340 (1381)
T ss_pred cceEEEEEcCCCCCCCCcceee
Confidence 4678888888887766655443
No 95
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.12 E-value=2e-09 Score=57.55 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=50.9
Q ss_pred CCCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeee
Q psy8666 6 NEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRN 83 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 83 (124)
|+++.|.|.+.+.+.+ .+.|..++...........................|.+++..|.|.|.|.+.|..+.. ...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-ccc
Confidence 7889999999876544 6799887764321100000011111112233444566779999999999999988765 456
Q ss_pred EEEEEE
Q psy8666 84 ATLQVA 89 (124)
Q Consensus 84 ~~l~v~ 89 (124)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 666553
No 96
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.11 E-value=2.1e-09 Score=56.26 Aligned_cols=71 Identities=32% Similarity=0.694 Sum_probs=52.2
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.|.|.+.+.|.+.+.|++++..+... ...+ .+..+...|.|.|.|.+.+..+...+
T Consensus 10 ~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~------------~~~~----~~~~~~~~~~g~y~C~~~~~~~~~~s 73 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS------------QNGL----FIPNVSPEDSGNYTCRASNGSGSNTS 73 (80)
T ss_dssp EEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE------------SSEE----EESSEEGGGTEEEEEEEEETTEEEEE
T ss_pred EEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee------------eeee----eeeeeccccCEEEEEEEEeCCCCeEe
Confidence 4678999999999998888999999998776632 0112 22445889999999999997665445
Q ss_pred eeEEEEE
Q psy8666 82 RNATLQV 88 (124)
Q Consensus 82 ~~~~l~v 88 (124)
..+.|.|
T Consensus 74 ~~~~v~V 80 (80)
T PF13895_consen 74 TSVNVTV 80 (80)
T ss_dssp EEEEEEE
T ss_pred eeEEeeC
Confidence 5555543
No 97
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.11 E-value=1.7e-09 Score=56.78 Aligned_cols=67 Identities=22% Similarity=0.484 Sum_probs=43.0
Q ss_pred EEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 9 VTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 9 ~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
+.|.|... +.|++.+.|||+++.+................+.+.+. ..+..|.+.|.|.+.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~----~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFP----VDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEE----eeeccCCcEEEEEEEChhhCC
Confidence 67899964 67999999999999886421111111111112223222 336788999999999988764
No 98
>KOG4194|consensus
Probab=99.10 E-value=5.2e-10 Score=77.29 Aligned_cols=89 Identities=31% Similarity=0.519 Sum_probs=65.8
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEE-eeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGEL-VETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
+...|+.+.+.|.+.|.|.|.+.|-|+|.. ++... .............++ .+++.+|.|.|.|.+.|..|..
T Consensus 623 tl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~--eRRl~Vmpedd~f~I----tnvk~eD~GiYtC~A~n~AG~i- 695 (873)
T KOG4194|consen 623 TLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAAR--ERRLHVMPEDDVFFI----TNVKIEDQGIYTCTAQNVAGQI- 695 (873)
T ss_pred eeecccceeeeeeccCCCCcceeehhcCCCCCchhh--hheeeecCCCCEEEE----ecccccccceeEEeeeccccce-
Confidence 566799999999999999999999998765 54331 111111223333443 4459999999999999999998
Q ss_pred eeeEEEEEEeeeeeeee
Q psy8666 81 SRNATLQVAVVIFFISF 97 (124)
Q Consensus 81 ~~~~~l~v~~~~~~~~~ 97 (124)
+....|.|...|.+...
T Consensus 696 sanAtL~V~e~p~f~~P 712 (873)
T KOG4194|consen 696 SANATLTVLETPSFSIP 712 (873)
T ss_pred eeceEEEEecCCccccc
Confidence 77899999988766544
No 99
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.08 E-value=2.5e-09 Score=58.03 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=50.2
Q ss_pred CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCC---------CCCceE--EEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKS---------DAKSQR--VILPTGSLFFLRVVHGKKEQDGGVYW 69 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~---------~~~~~~--~~~~~~~~~~~~~i~~~~~~d~g~y~ 69 (124)
|.+..|+++.|.|...+.+.+.+.|+++++....... ....+. .............|.+++.+|.|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 4578899999999998889999999977643211000 000000 00000112234567888999999999
Q ss_pred EEeEeCCccc
Q psy8666 70 CLARNSVGTA 79 (124)
Q Consensus 70 C~~~~~~~~~ 79 (124)
|.+.|..+..
T Consensus 82 C~v~~~~~~~ 91 (94)
T cd07690 82 CEVEDKKEEV 91 (94)
T ss_pred EEECCccceE
Confidence 9998876543
No 100
>KOG3513|consensus
Probab=99.04 E-value=2.2e-09 Score=78.10 Aligned_cols=84 Identities=29% Similarity=0.478 Sum_probs=68.0
Q ss_pred EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR 82 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~ 82 (124)
+..|.++.+.|.+.+.|.|.++|.|.+..+.+ ..++.+..++++.+.+ ++++|.|.|+|.+.|.+|+. ..
T Consensus 438 a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~-----~~r~~i~edGtL~I~n----~t~~DaG~YtC~A~N~~G~a-~~ 507 (1051)
T KOG3513|consen 438 AVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQ-----SGRIRILEDGTLEISN----VTRSDAGKYTCVAENKLGKA-ES 507 (1051)
T ss_pred EEeCCeEEEeeccCCCCcceEEEEcCCccccc-----CceEEECCCCcEEecc----cCcccCcEEEEEEEcccCcc-ce
Confidence 45688999999999999999999998884432 2456677888886544 49999999999999999999 45
Q ss_pred eEEEEEEeeeeeee
Q psy8666 83 NATLQVAVVIFFIS 96 (124)
Q Consensus 83 ~~~l~v~~~~~~~~ 96 (124)
...|.|.....+..
T Consensus 508 ~~~L~Vkd~tri~~ 521 (1051)
T KOG3513|consen 508 TGNLIVKDATRITL 521 (1051)
T ss_pred EEEEEEecCceEEe
Confidence 78888887765544
No 101
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.03 E-value=3.5e-09 Score=53.31 Aligned_cols=62 Identities=26% Similarity=0.468 Sum_probs=42.2
Q ss_pred CCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCC-cEEEEEEEcCCCccCCeEEEEEe
Q psy8666 6 NEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTG-SLFFLRVVHGKKEQDGGVYWCLA 72 (124)
Q Consensus 6 G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~d~g~y~C~~ 72 (124)
|+.+.|.|.+ .+.+.+.+.|+++++..... ......... .......|.+++.+|.|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG-----STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEE-----EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCc-----ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 66678899999988754421 111122222 22222456788999999999975
No 102
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.01 E-value=1.3e-08 Score=55.29 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=47.2
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEee--ccCC-CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVE--TSKS-DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG 77 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~--~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~ 77 (124)
.+.+|+++.|.|.+.+.+.+.+.|++.+..+. .... ....++.............|.+++.+|.|.|.|.+.+...
T Consensus 8 ~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 86 (95)
T cd05717 8 TVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV 86 (95)
T ss_pred EEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC
Confidence 57789999999999888889999986433211 0000 0111211111111112345678899999999999887653
No 103
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.01 E-value=2e-08 Score=54.77 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=57.4
Q ss_pred EEecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+.+|+.+.|.|.+.+.|.|. +.|.+++..+..... ...........+-.....+..++.++.|.|+|.+.|.....
T Consensus 14 ~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~-~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~- 91 (101)
T cd05860 14 FVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSD-HYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA- 91 (101)
T ss_pred EEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCcccc-ceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE-
Confidence 578999999999999999997 999998876543211 10110000111122223334558899999999999988777
Q ss_pred eeeEEEEEE
Q psy8666 81 SRNATLQVA 89 (124)
Q Consensus 81 ~~~~~l~v~ 89 (124)
+..+.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 556776653
No 104
>smart00409 IG Immunoglobulin.
Probab=98.97 E-value=5e-08 Score=51.11 Aligned_cols=80 Identities=38% Similarity=0.652 Sum_probs=52.5
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeC-CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+..|+.+.|.|.+.+.+.+.+.|+++ +..+... .......... .....+..++..|.|.|.|.+.+..+...
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~-----~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00409 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES-----GRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC-----CcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 467899999999998878889999998 6655411 1111222211 12223445589999999999998776653
Q ss_pred eeeEEEEE
Q psy8666 81 SRNATLQV 88 (124)
Q Consensus 81 ~~~~~l~v 88 (124)
. .+.|.|
T Consensus 79 ~-~~~l~V 85 (86)
T smart00409 79 S-TTTLTV 85 (86)
T ss_pred E-EEEEEE
Confidence 3 355443
No 105
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.97 E-value=5e-08 Score=51.11 Aligned_cols=80 Identities=38% Similarity=0.652 Sum_probs=52.5
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeC-CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+..|+.+.|.|.+.+.+.+.+.|+++ +..+... .......... .....+..++..|.|.|.|.+.+..+...
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~-----~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00410 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES-----GRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC-----CcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 467899999999998878889999998 6655411 1111222211 12223445589999999999998776653
Q ss_pred eeeEEEEE
Q psy8666 81 SRNATLQV 88 (124)
Q Consensus 81 ~~~~~l~v 88 (124)
. .+.|.|
T Consensus 79 ~-~~~l~V 85 (86)
T smart00410 79 S-TTTLTV 85 (86)
T ss_pred E-EEEEEE
Confidence 3 355443
No 106
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.91 E-value=2.3e-08 Score=54.79 Aligned_cols=72 Identities=28% Similarity=0.439 Sum_probs=48.0
Q ss_pred EEecCCCEEEEEee-e----------ccCCCeEEEEeCCEEeeccCCCC-CceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666 2 VVAKNEPVTLNCKA-E----------GKPEPTIEWYKDGELVETSKSDA-KSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69 (124)
Q Consensus 2 ~~~~G~~~~l~C~~-~----------~~p~p~v~w~k~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~ 69 (124)
.+.+|+++.+.|.. . ......+.|||++.......... ...+.......+.+... ..+|.|.|.
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa----~~eDSG~Y~ 86 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPA----ELQDSGLYT 86 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeC----ChhhCeEEE
Confidence 35689999999985 1 11233789999975544322111 11244556666776666 899999999
Q ss_pred EEeEeCCc
Q psy8666 70 CLARNSVG 77 (124)
Q Consensus 70 C~~~~~~~ 77 (124)
|.+.|...
T Consensus 87 C~~rN~t~ 94 (104)
T cd05896 87 CVLRNSTY 94 (104)
T ss_pred EEECCCCc
Confidence 99998753
No 107
>KOG4222|consensus
Probab=98.89 E-value=7.4e-09 Score=75.56 Aligned_cols=88 Identities=63% Similarity=1.029 Sum_probs=67.9
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc-cCCeEEEEEeEeCCccce
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE-QDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~d~g~y~C~~~~~~~~~~ 80 (124)
.+.-|..++|.|.+.|.|.|.+.|||+|..... ......+...+++.+++....+.... .|.|.|.|.+.|..|...
T Consensus 42 vvs~~~patlnc~asG~ppPti~w~k~G~~~~~--~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~av 119 (1281)
T KOG4222|consen 42 VVSKGEPATLNCKASGDPPPTIEWYKDGENVFK--GEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAV 119 (1281)
T ss_pred hccCCCCceeecCCCCCCCCceecccCCcccCC--CCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccceee
Confidence 456788999999999999999999999963321 12234556788888888876554443 389999999999999887
Q ss_pred eeeEEEEEEee
Q psy8666 81 SRNATLQVAVV 91 (124)
Q Consensus 81 ~~~~~l~v~~~ 91 (124)
++...|.+...
T Consensus 120 Sr~a~L~vavl 130 (1281)
T KOG4222|consen 120 SRGASLIVAVL 130 (1281)
T ss_pred ecCceEEEEEe
Confidence 88877777654
No 108
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.87 E-value=4.9e-08 Score=51.91 Aligned_cols=63 Identities=21% Similarity=0.391 Sum_probs=44.9
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS 75 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~ 75 (124)
.+..|+.+.|.|...+ +.+.+.|+++|..+... .. .......+.+.. ++.+|.|.|.|.+...
T Consensus 7 tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~-----~r-~~~~~~GLlI~~----~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 7 TVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQ-----FS-YRVGTDGLLILV----TSPEHSGTYRCYSEEE 69 (85)
T ss_pred EEecCCCEEEECCCCC-CCccEEEEECCcccCCC-----cc-eEEeCCCCEEEE----CCHhhCEEEEEEEecC
Confidence 5788999999999876 46799999999876521 12 223333343333 3899999999987743
No 109
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.87 E-value=9.2e-08 Score=63.02 Aligned_cols=77 Identities=16% Similarity=0.302 Sum_probs=50.8
Q ss_pred EecCCCEEEEEeeeccCCC---eEEEEeCCEEeeccCCCCCceEEEcc-------CCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666 3 VAKNEPVTLNCKAEGKPEP---TIEWYKDGELVETSKSDAKSQRVILP-------TGSLFFLRVVHGKKEQDGGVYWCLA 72 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~p~p---~v~w~k~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~d~g~y~C~~ 72 (124)
+..|+.+.|.|.+.+.|.+ .+.|+++|..+............... .........|..++.+|.|.|.|.+
T Consensus 232 ~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A 311 (326)
T PHA02785 232 TSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMA 311 (326)
T ss_pred ecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEE
Confidence 4569999999999988764 79999999877532111111111111 1112233456788999999999999
Q ss_pred EeCCccc
Q psy8666 73 RNSVGTA 79 (124)
Q Consensus 73 ~~~~~~~ 79 (124)
.|..+..
T Consensus 312 ~n~~~~~ 318 (326)
T PHA02785 312 FTIPSIS 318 (326)
T ss_pred EeccCce
Confidence 9987554
No 110
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.85 E-value=5.1e-08 Score=52.93 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=45.4
Q ss_pred EecCCCEEEEEee-e----ccCCCeEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 3 VAKNEPVTLNCKA-E----GKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 3 ~~~G~~~~l~C~~-~----~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
+..|....|.|+- . ..+.|.++|||++..+.... ..... .....+. |..+..+|.|.|.|.+.+..
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~----~~~~~~~~~~~L~----I~~v~~~D~G~YtC~~~~~~ 78 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN----EKFYSLKGSTYLH----IIDVSLNDSGYYTCKLQFTH 78 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC----cceEecCCCCEEE----EEEcChhhCEEEEEEEEEee
Confidence 4568889999972 2 33677999999998765321 11111 1222333 44559999999999999986
Q ss_pred cc
Q psy8666 77 GT 78 (124)
Q Consensus 77 ~~ 78 (124)
+.
T Consensus 79 ~g 80 (95)
T cd05897 79 EG 80 (95)
T ss_pred CC
Confidence 54
No 111
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.84 E-value=8.3e-08 Score=60.12 Aligned_cols=65 Identities=23% Similarity=0.481 Sum_probs=46.3
Q ss_pred EecCCCEEEEEeeec-----cCCCeEEEEeCCEEeeccCCCCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 3 VAKNEPVTLNCKAEG-----KPEPTIEWYKDGELVETSKSDAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~-----~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
+..|+.+.|.|.+.+ .|.|.++|+|++..+... ....... .+.+ .|.+++.+|.|.|.|.+....
T Consensus 141 ~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~-----~r~~~~~~~~~L----~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 141 FNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT-----DRIQLRNNNSTL----VIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC-----CCEEEeCCCCEE----EECcCCHHhCEEEEEEEEEeE
Confidence 467999999998753 357899999999987532 1222222 2233 356669999999999998853
No 112
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.82 E-value=3.5e-08 Score=64.96 Aligned_cols=74 Identities=26% Similarity=0.491 Sum_probs=51.5
Q ss_pred ecCCCEEEEEee-----eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCc-EEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666 4 AKNEPVTLNCKA-----EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGS-LFFLRVVHGKKEQDGGVYWCLARNSVG 77 (124)
Q Consensus 4 ~~G~~~~l~C~~-----~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~d~g~y~C~~~~~~~ 77 (124)
.+|+.+.+.|.. .|.|.+.+.|+|+|.... .......+. +. +..+..+|.|.|.|.+.|..+
T Consensus 39 ~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--------~~~~~~~g~~l~----i~~~~~~DsG~Y~C~a~N~~g 106 (326)
T PHA02785 39 LENEPVILPCPQINTLSSGYNILDILWEKRGADND--------RIIPIDNGSNML----ILNPTQSDSGIYICITKNETY 106 (326)
T ss_pred hcCCCEEEECCCccccccCCCCceEEEEECCCccc--------eEEEccCCceEE----EcccCcccCeEEEEEEECCCc
Confidence 468999999996 688889999999975321 111122333 33 344588999999999999887
Q ss_pred cceeeeEEEEEEe
Q psy8666 78 TAVSRNATLQVAV 90 (124)
Q Consensus 78 ~~~~~~~~l~v~~ 90 (124)
.. ...+.|.|..
T Consensus 107 ~~-~~s~~L~V~~ 118 (326)
T PHA02785 107 CD-MMSLNLTIVS 118 (326)
T ss_pred ce-EEEEEEEEEe
Confidence 65 4566666644
No 113
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.82 E-value=3.2e-07 Score=49.84 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=49.4
Q ss_pred CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeec--cCC-CCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVET--SKS-DAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~--~~~-~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
+.+.+|+++.|.|.+.......+.|++.+..+.- ... ..+.++.... .+..+ ...|..++.+|.|.|.|.+....
T Consensus 7 vtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~-tL~I~~vq~~D~G~Y~Cqv~t~p 85 (95)
T cd05881 7 VTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNEL-RVSLSNVSLSDEGRYFCQLYTDP 85 (95)
T ss_pred eEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEE-EEEECcCCcccCEEEEEEEEccc
Confidence 4678999999999998877778899987754321 100 1112222222 23333 34568889999999999887643
No 114
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.79 E-value=3.5e-07 Score=48.31 Aligned_cols=67 Identities=28% Similarity=0.593 Sum_probs=40.7
Q ss_pred CEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcE---EEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666 8 PVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSL---FFLRVVHGKKEQDGGVYWCLARNSVGT 78 (124)
Q Consensus 8 ~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~d~g~y~C~~~~~~~~ 78 (124)
.+.|.|.+.+ .|.+.++|+|+|+.+.... ........+.. .....+......|.+.|.|.+.|....
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~ 71 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGAT----YSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALP 71 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCce----eeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCC
Confidence 3689999976 6888999999998775321 11111122221 112223333456788999999986543
No 115
>KOG4222|consensus
Probab=98.75 E-value=3e-08 Score=72.51 Aligned_cols=92 Identities=32% Similarity=0.510 Sum_probs=70.3
Q ss_pred EecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 3 VAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 3 ~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
+..|+.+.+.|.. .+.|.|.+.|.|+|..+... ....+.+...+.+.+.++ ++.|.|.|.|.+.|..|..++
T Consensus 143 ~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~---~~~~~~lisgG~LlIsnv----rksD~GtY~CVatNmvG~ReS 215 (1281)
T KOG4222|consen 143 AAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHY---DVPIIALISGGNLLISNV----RKSDEGTYACVATNMVGERES 215 (1281)
T ss_pred ccccceeEEeccCCCCCCCCcceeecCCCccccc---cceeEEEecCCcEEEecc----ccCCCceeeeeeccccccccc
Confidence 4468889999984 68899999999999987621 112333455666654444 999999999999999999989
Q ss_pred eeEEEEEEeeeeeeeeccce
Q psy8666 82 RNATLQVAVVIFFISFFRFK 101 (124)
Q Consensus 82 ~~~~l~v~~~~~~~~~~~~~ 101 (124)
....|.|...|.+..-+...
T Consensus 216 ~~A~lsv~e~P~f~~rp~~~ 235 (1281)
T KOG4222|consen 216 IPARLSVQEKPWFWKRPKDL 235 (1281)
T ss_pred ccceeeeccCCccccccccc
Confidence 99999999988766554433
No 116
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.74 E-value=1.8e-07 Score=50.45 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=48.5
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC-c-cc
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV-G-TA 79 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~-~-~~ 79 (124)
.+..|++++|.|... .+...+.|+|+|...... . ...........+..++.+|.|.|+|...+.. + +.
T Consensus 12 vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-------~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~ 81 (91)
T cd05751 12 VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-------K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSE 81 (91)
T ss_pred ccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-------c--cCCCceeEEEEccCCChhHCEEEEEEEECCCCccCC
Confidence 357899999999774 566778899998753310 0 0111111222345668999999999998752 2 23
Q ss_pred eeeeEEEEE
Q psy8666 80 VSRNATLQV 88 (124)
Q Consensus 80 ~~~~~~l~v 88 (124)
.+..+.|.|
T Consensus 82 ~Sd~lel~V 90 (91)
T cd05751 82 PSDPLELVV 90 (91)
T ss_pred CCCcEEEEe
Confidence 355555554
No 117
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.72 E-value=1.9e-07 Score=49.23 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=45.9
Q ss_pred EEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666 9 VTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ 87 (124)
Q Consensus 9 ~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 87 (124)
+.|.|.+. +.|.+.|.|||++..+..... ................+......|...|.|.+.|+.-........|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~---~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~ 78 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKST---VEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLE 78 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCccc---ceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEE
Confidence 57899976 458889999999998864210 00000111112222222222445678899999997654445566666
Q ss_pred EEe
Q psy8666 88 VAV 90 (124)
Q Consensus 88 v~~ 90 (124)
|.+
T Consensus 79 V~y 81 (82)
T cd05883 79 VQY 81 (82)
T ss_pred EEE
Confidence 654
No 118
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.69 E-value=3.8e-07 Score=50.25 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=47.5
Q ss_pred CEEecCCCEEEEEeeecc-CCCeEEEEeCCE----E-eecc-CC------CCCceEEEcc-CCcEEEEEEEcCCCccCCe
Q psy8666 1 MVVAKNEPVTLNCKAEGK-PEPTIEWYKDGE----L-VETS-KS------DAKSQRVILP-TGSLFFLRVVHGKKEQDGG 66 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~----~-~~~~-~~------~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g 66 (124)
|.+..|+++.|.|..... +...+.|+|... . +... .. ....+..... .........|.+++.+|.|
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 568899999999998875 667899998432 1 1100 00 0111111111 1112334456888999999
Q ss_pred EEEEEeEeCCc
Q psy8666 67 VYWCLARNSVG 77 (124)
Q Consensus 67 ~y~C~~~~~~~ 77 (124)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987653
No 119
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.68 E-value=2.6e-07 Score=57.89 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=51.9
Q ss_pred EEecCCCEEEEEeeeccC-----------CCeEEEEeCCEEee--ccCCCC-----CceEEEccCCcEEEEEEEcCCCcc
Q psy8666 2 VVAKNEPVTLNCKAEGKP-----------EPTIEWYKDGELVE--TSKSDA-----KSQRVILPTGSLFFLRVVHGKKEQ 63 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p-----------~p~v~w~k~g~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~ 63 (124)
.+.+|+++.|.|.+.+.| .+.+.|+|.+...- ...... .........+.+ .|.+++.+
T Consensus 33 ~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L----~I~~v~~~ 108 (227)
T PHA02826 33 YAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENL----WIGNVINI 108 (227)
T ss_pred EecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeE----EECCCChH
Confidence 467899999999986644 45899999875421 110000 001001112333 34566999
Q ss_pred CCeEEEEEeEeCCccceeeeEEEEEE
Q psy8666 64 DGGVYWCLARNSVGTAVSRNATLQVA 89 (124)
Q Consensus 64 d~g~y~C~~~~~~~~~~~~~~~l~v~ 89 (124)
|.|.|.|.+.|..+.. ...+.|.|.
T Consensus 109 DsG~Y~C~a~N~~~~~-~~~i~L~V~ 133 (227)
T PHA02826 109 DEGIYICTISSGNICE-ESTIRLTFD 133 (227)
T ss_pred HCEEEEEEEEECCcce-EEEEEEEEe
Confidence 9999999999977665 445666663
No 120
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.68 E-value=3.2e-07 Score=49.42 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=46.0
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeec--------cC-----CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVET--------SK-----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~--------~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~ 72 (124)
|++++|.|.........+.|++....... .. .....+.....++++. |.+++.+|.|.|.|..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~----I~~l~~~DsG~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLL----IQNLTKEDSGTYTLQI 76 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEE----EccCCchhcEEEEEEE
Confidence 78899999887656668999986432110 00 0011222233344443 4566999999999999
Q ss_pred EeCCccceeeeEE
Q psy8666 73 RNSVGTAVSRNAT 85 (124)
Q Consensus 73 ~~~~~~~~~~~~~ 85 (124)
....+......+.
T Consensus 77 ~~~~~~~~~~~~~ 89 (92)
T cd05741 77 ISTNGVTENAKFF 89 (92)
T ss_pred EcCCCcEEEEEEE
Confidence 9876554333333
No 121
>KOG4221|consensus
Probab=98.66 E-value=2.1e-07 Score=68.73 Aligned_cols=82 Identities=24% Similarity=0.483 Sum_probs=66.6
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
++..|+.+.|.|.+.+.|.|.+.|.|+...+... .+.....++.+.+... +..|.|.|+|.+.+..-+..+
T Consensus 151 t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~-----~r~i~lpsG~L~I~~~----qp~d~g~yrc~vt~g~~~r~S 221 (1381)
T KOG4221|consen 151 TLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLD-----SRVIVLPSGALEISGL----QPSDTGEYRCVVTGGASQRTS 221 (1381)
T ss_pred eEecCCcEEEEEEEcCccCceeEEecccccccCC-----CcEEEcCCCcEEeccc----ccCCCceEEEEEecCCcCCcc
Confidence 4567999999999999999999999998866642 3556677888865555 999999999999998777767
Q ss_pred eeEEEEEEeee
Q psy8666 82 RNATLQVAVVI 92 (124)
Q Consensus 82 ~~~~l~v~~~~ 92 (124)
....|.|...+
T Consensus 222 ~~a~ltv~s~~ 232 (1381)
T KOG4221|consen 222 NEAELTVLSDP 232 (1381)
T ss_pred ceeEEEecCCc
Confidence 78888887544
No 122
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.66 E-value=5.4e-07 Score=49.21 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=44.9
Q ss_pred CEEecCCCEEEEEeeecc--CCCeEEEEeCCE--Ee---e-cc-CC--CCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666 1 MVVAKNEPVTLNCKAEGK--PEPTIEWYKDGE--LV---E-TS-KS--DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~--p~p~v~w~k~g~--~~---~-~~-~~--~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~ 69 (124)
+.+.+|+++.|.|..... ....+.|||... .. . .. .. ....+....... ......|.+++.+|.|.|.
T Consensus 1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-NTASLTISGAQTEDEADYY 79 (98)
T ss_pred CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-CEEEEEECCCChhhCEEEE
Confidence 467899999999998664 456799998432 11 1 00 00 001122222222 2233456888999999999
Q ss_pred EEeEeC
Q psy8666 70 CLARNS 75 (124)
Q Consensus 70 C~~~~~ 75 (124)
|.+.+.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 987653
No 123
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.66 E-value=9.5e-07 Score=49.06 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=46.6
Q ss_pred CEEecCCCEEEEEeeeccCCCeEEEEeCCE--E---ee-ccCC---CCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEE
Q psy8666 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGE--L---VE-TSKS---DAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWC 70 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~--~---~~-~~~~---~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C 70 (124)
+.+..|+++.|.|...+.+.+.+.|||... . +. .... ....+..... .........|.+++.+|.|.|.|
T Consensus 8 v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C 87 (109)
T cd04983 8 LSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFC 87 (109)
T ss_pred eEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEE
Confidence 357789999999999877788899998532 1 00 0000 0112221211 11122334567889999999999
Q ss_pred EeEeCC
Q psy8666 71 LARNSV 76 (124)
Q Consensus 71 ~~~~~~ 76 (124)
.+.+..
T Consensus 88 ~~~~~~ 93 (109)
T cd04983 88 ALSESG 93 (109)
T ss_pred EEecCC
Confidence 988653
No 124
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.65 E-value=5.4e-07 Score=50.28 Aligned_cols=74 Identities=16% Similarity=0.344 Sum_probs=44.9
Q ss_pred CEEecCCCEEEEEeeeccCCCeEEEEeCCE--Eee----ccCC-------CCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGE--LVE----TSKS-------DAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~--~~~----~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~ 67 (124)
+.+.+|+++.|.|...+ +.+.+.|||... .+. .... ....+..............|.+++.+|.|.
T Consensus 8 ~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~ 86 (110)
T cd05899 8 LIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAV 86 (110)
T ss_pred eEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEE
Confidence 35788999999999877 778899998532 111 0000 001111111111122334567789999999
Q ss_pred EEEEeEeC
Q psy8666 68 YWCLARNS 75 (124)
Q Consensus 68 y~C~~~~~ 75 (124)
|.|.+.+.
T Consensus 87 Y~Ca~~~~ 94 (110)
T cd05899 87 YLCASSLG 94 (110)
T ss_pred EEEEeeCC
Confidence 99998764
No 125
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.65 E-value=7.8e-07 Score=49.29 Aligned_cols=73 Identities=22% Similarity=0.389 Sum_probs=44.0
Q ss_pred EEecCCCEEEEEeeeccC-CCeEEEEeCC--EE---eeccC----CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666 2 VVAKNEPVTLNCKAEGKP-EPTIEWYKDG--EL---VETSK----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL 71 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k~g--~~---~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~ 71 (124)
.+.+|+++.|.|...+.. ...+.|||.. .. +.-.. .....+........ .....|.+++.+|.|.|.|.
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~~~~~Dsg~Y~Ca 89 (106)
T cd04980 11 SVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGT-DFTLTISRVEPEDAAVYYCQ 89 (106)
T ss_pred EECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCC-EEEEEECCCChHHCEEEEEE
Confidence 567899999999987654 5679999743 21 11000 00011121212222 23345688899999999998
Q ss_pred eEeC
Q psy8666 72 ARNS 75 (124)
Q Consensus 72 ~~~~ 75 (124)
+.+.
T Consensus 90 ~~~~ 93 (106)
T cd04980 90 QYGT 93 (106)
T ss_pred EeCC
Confidence 8654
No 126
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.64 E-value=1.2e-06 Score=48.59 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=47.9
Q ss_pred EecCCCEEEEEeeeccCCCeEEEEeCCE-----EeeccCC---------CCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGE-----LVETSKS---------DAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~-----~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y 68 (124)
+.+|+++.|.|.........+.|||... .+..-.. ....+.....++++.+ ++++..|.|.|
T Consensus 10 ~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I----~~v~~~D~G~Y 85 (105)
T cd05774 10 VAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLI----QNVTQKDTGFY 85 (105)
T ss_pred ccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEE----ecCCcccCEEE
Confidence 4579999999976444445789999521 1111000 0112333445566654 44599999999
Q ss_pred EEEeEeCCccceeeeEEE
Q psy8666 69 WCLARNSVGTAVSRNATL 86 (124)
Q Consensus 69 ~C~~~~~~~~~~~~~~~l 86 (124)
.|.+.+...........|
T Consensus 86 ~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 86 TLQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEEeCCccEEEEEEEE
Confidence 999998764433334443
No 127
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.58 E-value=3.3e-06 Score=46.75 Aligned_cols=85 Identities=22% Similarity=0.298 Sum_probs=49.4
Q ss_pred cCCCEEEEEeeeccC------CCeEEEEeCC-----E-Eeec-cCCC----CCc--eEEEccCCcEEEEEEEcCCCccCC
Q psy8666 5 KNEPVTLNCKAEGKP------EPTIEWYKDG-----E-LVET-SKSD----AKS--QRVILPTGSLFFLRVVHGKKEQDG 65 (124)
Q Consensus 5 ~G~~~~l~C~~~~~p------~p~v~w~k~g-----~-~~~~-~~~~----~~~--~~~~~~~~~~~~~~~i~~~~~~d~ 65 (124)
.|+++.|.|.....+ .+.+.|+|.. . .+.. .... ... ...............|.+++.+|.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999987543 4679999862 1 1110 0000 001 111101111122334677899999
Q ss_pred eEEEEEeEeCCccceeeeEEEEEEe
Q psy8666 66 GVYWCLARNSVGTAVSRNATLQVAV 90 (124)
Q Consensus 66 g~y~C~~~~~~~~~~~~~~~l~v~~ 90 (124)
|.|.|.+.+..+.. ...+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~-~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDE-QDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCce-EEEEEEEEEE
Confidence 99999999876554 5677777654
No 128
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.54 E-value=6e-06 Score=45.66 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=48.9
Q ss_pred cCCCEEEEEeeeccC------CCeEEEEeCCE----E---eeccCC-----C-CCceEEEccCCcEEEEEEEcCCCccCC
Q psy8666 5 KNEPVTLNCKAEGKP------EPTIEWYKDGE----L---VETSKS-----D-AKSQRVILPTGSLFFLRVVHGKKEQDG 65 (124)
Q Consensus 5 ~G~~~~l~C~~~~~p------~p~v~w~k~g~----~---~~~~~~-----~-~~~~~~~~~~~~~~~~~~i~~~~~~d~ 65 (124)
.|+++.|.|.....| ...+.|+|... . +..... . ...+..............|.+++.+|.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 488999999876543 35699998531 1 100000 0 001111111111122335677799999
Q ss_pred eEEEEEeEeCCccceeeeEEEEEEe
Q psy8666 66 GVYWCLARNSVGTAVSRNATLQVAV 90 (124)
Q Consensus 66 g~y~C~~~~~~~~~~~~~~~l~v~~ 90 (124)
|.|.|.+.+..+.. ...+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~-~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDE-SVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccce-EEEEEEEEEE
Confidence 99999999877765 4566666643
No 129
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.51 E-value=6.4e-06 Score=46.45 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=42.6
Q ss_pred EEecCCCEEEEEeeecc----CCCeEEE-Ee--------------CCEEeeccCCCCCceEEE--ccCCcEEEEEEEcCC
Q psy8666 2 VVAKNEPVTLNCKAEGK----PEPTIEW-YK--------------DGELVETSKSDAKSQRVI--LPTGSLFFLRVVHGK 60 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~----p~p~v~w-~k--------------~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~ 60 (124)
.+..|+.+.|.|..... +...+.| |+ +|+...........+... ...... ....|.++
T Consensus 9 ~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~d-aSI~I~nv 87 (116)
T cd05879 9 YGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKD-GSIVIHNL 87 (116)
T ss_pred EEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCe-eEEEEccC
Confidence 46679999999998653 2357899 33 222211000000011111 111111 22345777
Q ss_pred CccCCeEEEEEeEeCCcc
Q psy8666 61 KEQDGGVYWCLARNSVGT 78 (124)
Q Consensus 61 ~~~d~g~y~C~~~~~~~~ 78 (124)
+.+|.|.|.|...|+...
T Consensus 88 ~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 88 DYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred CcccCEEEEEEEEcCCCc
Confidence 999999999999997654
No 130
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.50 E-value=1.2e-05 Score=44.98 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=48.6
Q ss_pred cCCCEEEEEeeeccC----------CCeEEEEeC--CEEee----ccCC-----CCCceEEEc--cCCcEEEEEEEcCCC
Q psy8666 5 KNEPVTLNCKAEGKP----------EPTIEWYKD--GELVE----TSKS-----DAKSQRVIL--PTGSLFFLRVVHGKK 61 (124)
Q Consensus 5 ~G~~~~l~C~~~~~p----------~p~v~w~k~--g~~~~----~~~~-----~~~~~~~~~--~~~~~~~~~~i~~~~ 61 (124)
.|+++.|.|.....+ ...+.|+|. ++... .... ....+.... ..........|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999986543 256899985 22111 0000 000111111 011111224567789
Q ss_pred ccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90 (124)
Q Consensus 62 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 90 (124)
.+|.|.|.|.+....... ...+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~-~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDE-QDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcc-eEEEEEEEEE
Confidence 999999999998865555 4577777654
No 131
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.49 E-value=8.5e-06 Score=45.66 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=24.4
Q ss_pred EEcCCCccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666 56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90 (124)
Q Consensus 56 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 90 (124)
.|.+++.+|.|.|.|.+....... +..+.|.|..
T Consensus 77 ~I~nl~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~g 110 (112)
T cd05900 77 EITELRSNDSGTYRCEVMHGIEDN-YDTVEVQVKG 110 (112)
T ss_pred EEeecccccCEEEEEEEecCCCCc-eeEEEEEEEe
Confidence 345569999999999999766555 4556666543
No 132
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.45 E-value=8.5e-06 Score=45.24 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=43.0
Q ss_pred CEEecCCCEEEEEeeecc-CCCeEEEEeCCEE---------eeccCCC-------C-CceEEEc-cCCcEEEEEEEcCCC
Q psy8666 1 MVVAKNEPVTLNCKAEGK-PEPTIEWYKDGEL---------VETSKSD-------A-KSQRVIL-PTGSLFFLRVVHGKK 61 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~~---------~~~~~~~-------~-~~~~~~~-~~~~~~~~~~i~~~~ 61 (124)
+.+..|++++|.|..... ....+.|||.... +...... . ..+.... ..........|.+++
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 568899999999998653 3457999984321 0000000 0 0111111 111222334567889
Q ss_pred ccCCeEEEEEeEe
Q psy8666 62 EQDGGVYWCLARN 74 (124)
Q Consensus 62 ~~d~g~y~C~~~~ 74 (124)
.+|.|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999998754
No 133
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.41 E-value=5.9e-06 Score=44.86 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=41.5
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLAR 73 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~ 73 (124)
.+..|++++|.|.... ..-.+.|+|+|...... ...............|..++.+|.|.|+|...
T Consensus 11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~------~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL------HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce------ecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4668999999997654 44568899988653210 00001112222333566779999999999864
No 134
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.40 E-value=1.1e-05 Score=44.04 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=24.7
Q ss_pred EEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666 55 RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88 (124)
Q Consensus 55 ~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 88 (124)
..|.+++.+|.|.|.|.+.+..+.. ...+.|.|
T Consensus 67 L~I~~v~~~D~G~Y~C~v~~~~~~~-~~~i~l~v 99 (100)
T cd05713 67 LRIHNVRASDEGLYTCFFQSDGFYE-EATVELKV 99 (100)
T ss_pred EEEEcCChhhCEEEEEEEecCCcEE-EEEEEEEE
Confidence 3456779999999999999876654 45666654
No 135
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.38 E-value=5e-06 Score=46.75 Aligned_cols=73 Identities=19% Similarity=0.384 Sum_probs=43.6
Q ss_pred EEecCCCEEEEEeeec--cCCCeEEEEeC--CEEe---e-ccCCC--------CCceEEEccCC-cEEEEEEEcCCCccC
Q psy8666 2 VVAKNEPVTLNCKAEG--KPEPTIEWYKD--GELV---E-TSKSD--------AKSQRVILPTG-SLFFLRVVHGKKEQD 64 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~--~p~p~v~w~k~--g~~~---~-~~~~~--------~~~~~~~~~~~-~~~~~~~i~~~~~~d 64 (124)
.+..|+.+.|.|...+ .+.+.+.|||. +... . ..... ...+....... .......|.+++.+|
T Consensus 9 ~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 88 (116)
T cd04982 9 TREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKED 88 (116)
T ss_pred EeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHH
Confidence 5678999999999876 57788999984 2211 0 00000 01122221111 122334456779999
Q ss_pred CeEEEEEeEe
Q psy8666 65 GGVYWCLARN 74 (124)
Q Consensus 65 ~g~y~C~~~~ 74 (124)
.|.|.|.+..
T Consensus 89 sg~Y~C~~~~ 98 (116)
T cd04982 89 SATYYCAYWE 98 (116)
T ss_pred CEEEEEEEec
Confidence 9999998764
No 136
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.37 E-value=2.5e-06 Score=46.17 Aligned_cols=71 Identities=24% Similarity=0.388 Sum_probs=43.5
Q ss_pred cCCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEE--EEcCCCccCCeEEEEEeEeCCc
Q psy8666 5 KNEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLR--VVHGKKEQDGGVYWCLARNSVG 77 (124)
Q Consensus 5 ~G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~d~g~y~C~~~~~~~ 77 (124)
.|+.+.|.|.+.+. |. ..++|+++|..+..... ........++...+.. .+......+.+.|.|.+.+...
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~--~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT--TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee--ccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 57899999999987 53 57999999988764211 0111122333333322 2211122489999999998654
No 137
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.35 E-value=5.5e-06 Score=45.22 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=48.6
Q ss_pred ecCCCEEEEEeeec-cCCCeEEEEeCCEEeecc-CC---CC------Cc-eEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666 4 AKNEPVTLNCKAEG-KPEPTIEWYKDGELVETS-KS---DA------KS-QRVILPTGSLFFLRVVHGKKEQDGGVYWCL 71 (124)
Q Consensus 4 ~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~-~~---~~------~~-~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~ 71 (124)
..|+++.|.|.... .....+.|+|........ .. .. .. .+.... .. .....|.+++.+|.|.|.|.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~-~~-~~sL~I~~~~~~DsG~Y~c~ 79 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFS-QN-DYSLQISNLKMEDAGSYRAE 79 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEec-CC-ceeEEECCCchHHCEEEEEE
Confidence 36899999998754 445578999875433211 10 00 00 011111 11 12234577799999999999
Q ss_pred eEeCCccceeeeEEEEE
Q psy8666 72 ARNSVGTAVSRNATLQV 88 (124)
Q Consensus 72 ~~~~~~~~~~~~~~l~v 88 (124)
.....+......+.|.|
T Consensus 80 v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 80 INTKNGVTITKEFTLHI 96 (97)
T ss_pred EEcCCCCeEEEEEEEEe
Confidence 99877665445555544
No 138
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.34 E-value=2.2e-05 Score=41.46 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=38.7
Q ss_pred EEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEE--EEEcCCCccCCeEEEEEeEeCCcc
Q psy8666 9 VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFL--RVVHGKKEQDGGVYWCLARNSVGT 78 (124)
Q Consensus 9 ~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~d~g~y~C~~~~~~~~ 78 (124)
+.|.|.+.+ .|.+.+.|++++..+.... ........+...+. ..+......+.+.|.|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK----LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce----eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 578999865 4888999999998875321 11111122222222 111121334567999999987654
No 139
>KOG4194|consensus
Probab=98.33 E-value=4.6e-06 Score=58.46 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=69.0
Q ss_pred ecCCCEEEEEeeecc--CCCeEEEEeCCEEeeccCCCCCceEEEccC--------CcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666 4 AKNEPVTLNCKAEGK--PEPTIEWYKDGELVETSKSDAKSQRVILPT--------GSLFFLRVVHGKKEQDGGVYWCLAR 73 (124)
Q Consensus 4 ~~G~~~~l~C~~~~~--p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~d~g~y~C~~~ 73 (124)
.-|.++.|.|.+.+. .+-++.|.++........-. +.-...... ...+......++...|.|.|.|.+.
T Consensus 516 l~g~nirftC~a~sssasplsi~WR~dnevq~rv~ve-d~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvt 594 (873)
T KOG4194|consen 516 LIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVE-DFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVT 594 (873)
T ss_pred hhccceEEEEEeccCCCCCceeEeeeccccCcccchh-cchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEe
Confidence 358899999998763 34468899976533321100 000000000 0011112234558999999999999
Q ss_pred eCCccceeeeEEEEEEeeeeeeeeccceeh-hhhhheeeeeecCc
Q psy8666 74 NSVGTAVSRNATLQVAVVIFFISFFRFKLS-AYLYDLFRGVVNKT 117 (124)
Q Consensus 74 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 117 (124)
|.+|+..+..+.|.|...|.|...|+--+- ...-+-+.|...|.
T Consensus 595 N~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~ 639 (873)
T KOG4194|consen 595 NHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGH 639 (873)
T ss_pred cccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCC
Confidence 999999999999999999988777654332 22223455555444
No 140
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.32 E-value=1.5e-05 Score=44.18 Aligned_cols=86 Identities=20% Similarity=0.344 Sum_probs=48.8
Q ss_pred EEecCCCEEEEEeee-ccCCCeEEEEeCCE-----Eee-ccC--------CCCCceEE-EccCCcEEEEEEEcCCCccCC
Q psy8666 2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGE-----LVE-TSK--------SDAKSQRV-ILPTGSLFFLRVVHGKKEQDG 65 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~-----~~~-~~~--------~~~~~~~~-~~~~~~~~~~~~i~~~~~~d~ 65 (124)
.+..|+++.|.|... ......+.|++... .+. ... ........ ............|.+++.+|.
T Consensus 12 ~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~Ds 91 (114)
T PF07686_consen 12 TVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDS 91 (114)
T ss_dssp EEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGE
T ss_pred EEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcC
Confidence 567899999999988 44566899998321 111 000 00001111 111111223345678899999
Q ss_pred eEEEEEeEeCCccceeeeEEEE
Q psy8666 66 GVYWCLARNSVGTAVSRNATLQ 87 (124)
Q Consensus 66 g~y~C~~~~~~~~~~~~~~~l~ 87 (124)
|.|.|.............+.|.
T Consensus 92 G~Y~C~v~~~~~~~~~~~~~L~ 113 (114)
T PF07686_consen 92 GTYFCQVSTSNEQSFGNGTKLT 113 (114)
T ss_dssp EEEEEEEEESSEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEECCcEEEE
Confidence 9999998887333334444444
No 141
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.29 E-value=3.8e-05 Score=41.74 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=43.5
Q ss_pred CCEEEEEeeeccC---CCeEEEEeCCEE----e--eccCC----CC--CceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666 7 EPVTLNCKAEGKP---EPTIEWYKDGEL----V--ETSKS----DA--KSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL 71 (124)
Q Consensus 7 ~~~~l~C~~~~~p---~p~v~w~k~g~~----~--~~~~~----~~--~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~ 71 (124)
+++.|.|.....+ ...+.|+|.... + ..... .. ..+..............|.+++.+|.|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999986543 346899985421 1 00000 00 01111111111122335677799999999999
Q ss_pred eEe-CCccceeeeEEEEE
Q psy8666 72 ARN-SVGTAVSRNATLQV 88 (124)
Q Consensus 72 ~~~-~~~~~~~~~~~l~v 88 (124)
+.. +.|.. ...+.|.|
T Consensus 81 v~~~~~g~~-~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNR-QKVTTLTV 97 (98)
T ss_pred EEeCCCCcE-EEEEEEEe
Confidence 876 44554 44555554
No 142
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.27 E-value=2.8e-05 Score=41.32 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=39.7
Q ss_pred EecCCCEEEEEeeeccC--CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666 3 VAKNEPVTLNCKAEGKP--EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS 75 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~p--~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~ 75 (124)
+..|+.++|.|.....+ .+.+.|+..+...... .......+.+ ..+...|.|.|.|.+...
T Consensus 11 lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~--------~~~~~ktL~~----~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 11 VLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI--------LNQDKKTLNL----VQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eecCCcEEEEEecCCCCCCCccEEEeCCCCcccee--------ccCCccEEEe----ceeCcccCCEEEEEEEEC
Confidence 45799999999985544 4489999765443210 0112223333 334899999999999765
No 143
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.26 E-value=4.7e-05 Score=42.85 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=42.4
Q ss_pred CEEecCCCEEEEEeeeccC----CCeEEEEeC----CEE--eeccCCC----CC----ceEEEc-cCCcEEEEEEEcCCC
Q psy8666 1 MVVAKNEPVTLNCKAEGKP----EPTIEWYKD----GEL--VETSKSD----AK----SQRVIL-PTGSLFFLRVVHGKK 61 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~p----~p~v~w~k~----g~~--~~~~~~~----~~----~~~~~~-~~~~~~~~~~i~~~~ 61 (124)
+.+..|+++.|.|.....+ ...+.|++. +.. +...... .. .+.... ..........|.+++
T Consensus 8 v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~ 87 (115)
T cd05880 8 VEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ 87 (115)
T ss_pred EEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence 3567899999999975432 235899742 211 1100000 00 011111 000111223456779
Q ss_pred ccCCeEEEEEeEeCCcc
Q psy8666 62 EQDGGVYWCLARNSVGT 78 (124)
Q Consensus 62 ~~d~g~y~C~~~~~~~~ 78 (124)
.+|.|.|.|.+.|....
T Consensus 88 ~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 88 PTDNGTYTCQVKNPPDV 104 (115)
T ss_pred hhhCEEEEEEEEeCCCC
Confidence 99999999999986553
No 144
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.25 E-value=8.4e-06 Score=44.67 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=42.6
Q ss_pred EecCCCEEEEEeeec-cCCCe--EEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCC-eEEEEEeEeCCcc
Q psy8666 3 VAKNEPVTLNCKAEG-KPEPT--IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG-GVYWCLARNSVGT 78 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~-~p~p~--v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~-g~y~C~~~~~~~~ 78 (124)
+.+|+.+.+.|.+.+ .|.+. +.|||++..+......... ...........+. +++.|. ..|.|.+.+....
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~----~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNT----KSPVNAPATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecccc----CCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 467999999999875 57776 6999999887642100000 0001111111111 245555 5999999987654
Q ss_pred c
Q psy8666 79 A 79 (124)
Q Consensus 79 ~ 79 (124)
.
T Consensus 88 ~ 88 (100)
T cd05755 88 E 88 (100)
T ss_pred c
Confidence 3
No 145
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.25 E-value=1.6e-05 Score=40.59 Aligned_cols=57 Identities=35% Similarity=0.578 Sum_probs=34.9
Q ss_pred EEEEEeeeccC-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666 9 VTLNCKAEGKP-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN 74 (124)
Q Consensus 9 ~~l~C~~~~~p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~ 74 (124)
+.|.|.+.+.+ .+.+.|+ ....... . .............+..+..+|.|.|.|.+.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~-------~-~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSNPSFN-------S-NSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEEEEEE-------E-EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecCCcee-------e-eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 89999998877 7789999 2111110 0 0011111112223456689999999999876
No 146
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.24 E-value=4.5e-05 Score=41.53 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=44.5
Q ss_pred CCCEEEEEeeeccCC-CeEEEEeCCE----Eee-c---cCCCC----CceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666 6 NEPVTLNCKAEGKPE-PTIEWYKDGE----LVE-T---SKSDA----KSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72 (124)
Q Consensus 6 G~~~~l~C~~~~~p~-p~v~w~k~g~----~~~-~---~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~ 72 (124)
|++++|.|....... -.+.|+|... .+. - ..... ..+..............|.+++.+|.|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 788999998654332 2589998421 111 0 00000 111111111112233456777999999999998
Q ss_pred EeCCccceeeeEEEEE
Q psy8666 73 RNSVGTAVSRNATLQV 88 (124)
Q Consensus 73 ~~~~~~~~~~~~~l~v 88 (124)
........+..+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7644333355666655
No 147
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.24 E-value=6.8e-05 Score=42.21 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=42.6
Q ss_pred EEecCCCEEEEEeeeccC----CCeEEEEeCCE------Eeec--cCC--C-CC----ceEEEccC-CcEEEEEEEcCCC
Q psy8666 2 VVAKNEPVTLNCKAEGKP----EPTIEWYKDGE------LVET--SKS--D-AK----SQRVILPT-GSLFFLRVVHGKK 61 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p----~p~v~w~k~g~------~~~~--~~~--~-~~----~~~~~~~~-~~~~~~~~i~~~~ 61 (124)
.+..|+.+.|.|...... ...+.|++... .+.. ... . .. .+...... ........|.+++
T Consensus 9 ~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 88 (116)
T cd05715 9 YAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQ 88 (116)
T ss_pred EEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCC
Confidence 567899999999875432 24589986321 1110 000 0 00 00011111 1111233557779
Q ss_pred ccCCeEEEEEeEeCCcc
Q psy8666 62 EQDGGVYWCLARNSVGT 78 (124)
Q Consensus 62 ~~d~g~y~C~~~~~~~~ 78 (124)
.+|.|.|.|.+.+....
T Consensus 89 ~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 89 FTDNGTYTCDVKNPPDI 105 (116)
T ss_pred cccCEEEEEEEEeCCCC
Confidence 99999999999987554
No 148
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.24 E-value=2.7e-05 Score=42.44 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=45.1
Q ss_pred CEEecCCCEEEEEeeec-cCCCeEEEEeCCEE-----eeccCC---CCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEE
Q psy8666 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGEL-----VETSKS---DAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWC 70 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~-----~~~~~~---~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C 70 (124)
+.+.+|+++.|.|.... .....+.|+|.... +..... ....+.... ..........|.+++.+|.|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 45789999999998764 35667899985421 110000 011112221 112223445567889999999999
Q ss_pred EeEeCC
Q psy8666 71 LARNSV 76 (124)
Q Consensus 71 ~~~~~~ 76 (124)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 877643
No 149
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.23 E-value=7.4e-05 Score=39.58 Aligned_cols=66 Identities=21% Similarity=0.375 Sum_probs=39.8
Q ss_pred EEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCC-cEEEEEE--EcCCCccCCeEEEEEeEeCCcc
Q psy8666 9 VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTG-SLFFLRV--VHGKKEQDGGVYWCLARNSVGT 78 (124)
Q Consensus 9 ~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~--i~~~~~~d~g~y~C~~~~~~~~ 78 (124)
+.|.|.+.+ +|.+.+.|+++|..+.... ........+ ..++... +......+...|.|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~----~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAP----TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcc----eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 678999876 4888999999998765321 111112222 3222221 1122345679999999987643
No 150
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.20 E-value=0.00015 Score=40.57 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=26.7
Q ss_pred EEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90 (124)
Q Consensus 54 ~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 90 (124)
...|.+++.+|.|.|.|......... ...+.|.|..
T Consensus 73 sL~i~nv~~~D~G~Y~C~v~~g~~~~-~~~v~L~V~g 108 (110)
T cd05902 73 SLVLSRLRYSDSGTYRCEVVLGINDE-QDTVPLEVTG 108 (110)
T ss_pred EEEECCCCHHHCEEEEEEEEECCccc-EEEEEEEEEE
Confidence 34567889999999999999865444 5567777654
No 151
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.14 E-value=8.8e-05 Score=44.81 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=54.2
Q ss_pred EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccC-CCC------CceEEEccCCcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666 2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSK-SDA------KSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLAR 73 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~-~~~------~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~ 73 (124)
.+.+|+++.|.|... +...+.+.|+|....+.... ... ..+..............|.+++.+|+|.|.|...
T Consensus 26 ~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~ 105 (189)
T PHA02987 26 TVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFN 105 (189)
T ss_pred EEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEE
Confidence 578999999999974 55678899998643222110 000 0111111111111233456679999999999877
Q ss_pred eC-CccceeeeEEEEEEeeee
Q psy8666 74 NS-VGTAVSRNATLQVAVVIF 93 (124)
Q Consensus 74 ~~-~~~~~~~~~~l~v~~~~~ 93 (124)
-. .|..++...-|.|.....
T Consensus 106 tfp~G~~~~gt~CLtVt~~~~ 126 (189)
T PHA02987 106 TLLSKNNEKGVVCLNVTTDSY 126 (189)
T ss_pred ecCCCCCceeEEEEEEEchhh
Confidence 64 442335677777766544
No 152
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.03 E-value=0.00047 Score=38.88 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=26.3
Q ss_pred EEcCCCccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666 56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90 (124)
Q Consensus 56 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 90 (124)
.|.+++..|.|.|.|......... ...+.|.|..
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCccc-EEEEEEEEEE
Confidence 456679999999999999877665 5677777654
No 153
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.03 E-value=0.00022 Score=37.74 Aligned_cols=67 Identities=19% Similarity=0.346 Sum_probs=38.3
Q ss_pred EEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEE--EEEcCCCccCCeEEEEEeEeCCcc
Q psy8666 9 VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFL--RVVHGKKEQDGGVYWCLARNSVGT 78 (124)
Q Consensus 9 ~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~d~g~y~C~~~~~~~~ 78 (124)
+.|.|.+.+ .|...++|+|+|..+..... .......++..... ..+......+...|.|.+.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~---~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKY---LKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCcee---eEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 578999876 57778999999998653210 01111112222222 122111345678999999986543
No 154
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.03 E-value=0.00016 Score=40.60 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=43.3
Q ss_pred CEEecCCCEEEEEeeecc-CCCeEEEEeC--CEEe--ec---cCC--CCCceEEEcc-CCcEEEEEEEcCCCccCCeEEE
Q psy8666 1 MVVAKNEPVTLNCKAEGK-PEPTIEWYKD--GELV--ET---SKS--DAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYW 69 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~-p~p~v~w~k~--g~~~--~~---~~~--~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~ 69 (124)
+.+..|+++.|.|..... ....+.|||. +..+ .. ... ....+..... .........|..++.+|.|.|.
T Consensus 9 v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~ 88 (116)
T cd07706 9 VSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYF 88 (116)
T ss_pred eEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEE
Confidence 357889999999997653 4566899984 2211 10 000 0112222211 1112233456788999999999
Q ss_pred EEeEe
Q psy8666 70 CLARN 74 (124)
Q Consensus 70 C~~~~ 74 (124)
|.+..
T Consensus 89 C~~~~ 93 (116)
T cd07706 89 CALST 93 (116)
T ss_pred EEEEC
Confidence 98875
No 155
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.03 E-value=0.00032 Score=38.42 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=23.6
Q ss_pred EEEcCCCccCCeEEEEEeEeC-CccceeeeEEEEE
Q psy8666 55 RVVHGKKEQDGGVYWCLARNS-VGTAVSRNATLQV 88 (124)
Q Consensus 55 ~~i~~~~~~d~g~y~C~~~~~-~~~~~~~~~~l~v 88 (124)
..|.+++.+|.|.|.|.+.+. .|.. ...+.|.|
T Consensus 66 L~I~nv~~sD~GtY~C~v~~~p~g~~-~~~~~L~V 99 (100)
T cd05888 66 LILRNAVQADEGKYKCRVITFPAGNF-EAELVLTV 99 (100)
T ss_pred EEEecCccccceEEEEEEEeCCCCCe-eeEEEEEe
Confidence 346777999999999999984 4443 44555554
No 156
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.98 E-value=0.00026 Score=39.95 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=42.1
Q ss_pred CEEecCCCEEEEEeeeccC--CCeEEEEeCC--EEe--e--cc---CC-----CCCceEEEcc-CCcEEEEEEEcCCCcc
Q psy8666 1 MVVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELV--E--TS---KS-----DAKSQRVILP-TGSLFFLRVVHGKKEQ 63 (124)
Q Consensus 1 v~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~--~--~~---~~-----~~~~~~~~~~-~~~~~~~~~i~~~~~~ 63 (124)
+.+..|++++|.|...... ...+.|||.. ..+ . .. .. ....++.... .....+...|.+++.+
T Consensus 7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 86 (117)
T cd04981 7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE 86 (117)
T ss_pred eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence 3578899999999875432 4568999842 211 1 00 00 0011111111 1112223456788999
Q ss_pred CCeEEEEEeEe
Q psy8666 64 DGGVYWCLARN 74 (124)
Q Consensus 64 d~g~y~C~~~~ 74 (124)
|.|.|.|....
T Consensus 87 Dsa~YyCa~~~ 97 (117)
T cd04981 87 DTAVYYCARGL 97 (117)
T ss_pred HCEEEEEEEEc
Confidence 99999997764
No 157
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.93 E-value=0.00016 Score=35.75 Aligned_cols=66 Identities=36% Similarity=0.516 Sum_probs=39.1
Q ss_pred EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
+.+.|.+.+.+...+.|++++......... ................+...+..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 368899888677889999988765422100 000011111222223344557789999999988765
No 158
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.91 E-value=0.00014 Score=40.11 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=42.4
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEE-------ee-ccC-CCC--------CceEEEccCCcEEEEEEEcCCCccC
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGEL-------VE-TSK-SDA--------KSQRVILPTGSLFFLRVVHGKKEQD 64 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~-------~~-~~~-~~~--------~~~~~~~~~~~~~~~~~i~~~~~~d 64 (124)
.+..|+.+.|.|.........+.|||.... +. ... ... ..+....... ......|..++.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS-NSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC-CEEEEEECCCCHHH
Confidence 467899999999886544567899984321 11 100 000 1111111112 23345567889999
Q ss_pred CeEEEEEeEe
Q psy8666 65 GGVYWCLARN 74 (124)
Q Consensus 65 ~g~y~C~~~~ 74 (124)
.|.|.|...+
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999997653
No 159
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.82 E-value=0.00038 Score=36.04 Aligned_cols=66 Identities=21% Similarity=0.446 Sum_probs=37.2
Q ss_pred EEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEE--cCCCccCCeEEEEEeEeCC
Q psy8666 9 VTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV--HGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 9 ~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~d~g~y~C~~~~~~ 76 (124)
+.|.|.+.+. |. ..+.|+|+|..+.... .........++.......+ ......+...|.|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~--~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGV--STTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCE--EECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 5799999886 54 4789999998643210 0011111233443333222 1223456789999987653
No 160
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.80 E-value=0.0012 Score=35.97 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=22.9
Q ss_pred EEcCCCccCCeEEEEEeEeC-CccceeeeEEEEE
Q psy8666 56 VVHGKKEQDGGVYWCLARNS-VGTAVSRNATLQV 88 (124)
Q Consensus 56 ~i~~~~~~d~g~y~C~~~~~-~~~~~~~~~~l~v 88 (124)
.|.+++.+|.|.|.|..... .|.. ...+.|.|
T Consensus 63 ~i~nv~~~D~G~Y~C~v~tfP~G~~-~~~~~l~~ 95 (96)
T cd05887 63 MLENVGFSDIGVYICKAVTFPLGNT-QSSTTVTV 95 (96)
T ss_pred EEeCCCccccEEEEEEEEeCCCCCe-eEEEEEEE
Confidence 45677999999999998764 4544 45556554
No 161
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.78 E-value=0.00073 Score=38.20 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=40.6
Q ss_pred EEecCCCEEEEEeeeccC------CCeEEEEeCCEE-----ee--ccCCC-----CCceEEEc-cCCcEEEEEEEcCCCc
Q psy8666 2 VVAKNEPVTLNCKAEGKP------EPTIEWYKDGEL-----VE--TSKSD-----AKSQRVIL-PTGSLFFLRVVHGKKE 62 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p------~p~v~w~k~g~~-----~~--~~~~~-----~~~~~~~~-~~~~~~~~~~i~~~~~ 62 (124)
.+..|+.+.|.|...... ...+.|||.... +. ..... ...+.... ..........|.+++.
T Consensus 10 ~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~ 89 (119)
T cd05712 10 SVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQP 89 (119)
T ss_pred EEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCCh
Confidence 567899999999865221 235789985321 11 00000 00111111 1112223345678899
Q ss_pred cCCeEEEEEeEe
Q psy8666 63 QDGGVYWCLARN 74 (124)
Q Consensus 63 ~d~g~y~C~~~~ 74 (124)
+|.|.|.|....
T Consensus 90 ~Dsg~Y~C~~~~ 101 (119)
T cd05712 90 EDSGKYFFRVEL 101 (119)
T ss_pred hhCeEEEEEEEc
Confidence 999999998755
No 162
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.77 E-value=0.00069 Score=36.58 Aligned_cols=68 Identities=22% Similarity=0.367 Sum_probs=39.7
Q ss_pred CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
++...|.|.+.|. |.. .++|+++|....... .........++....... ..+...+...|.|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~--~~~~~~~~~d~ty~~~s~-l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDV--ESGEILPNGDGTYQLWVT-LEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccc--cccceEECCCCeEEEEEE-EEECCCCCCEEEEEEEeCC
Confidence 5679999999996 544 689999996332110 001111122333322222 2235568899999998754
No 163
>PHA03376 BARF1; Provisional
Probab=97.72 E-value=0.0021 Score=39.21 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=41.8
Q ss_pred EEecCCCEEEEEeeecc---CCCeEEEEeCCE----Ee--------eccCCCCCceEEEccCCcEEEEEEEcCCCccCCe
Q psy8666 2 VVAKNEPVTLNCKAEGK---PEPTIEWYKDGE----LV--------ETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~---p~p~v~w~k~g~----~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g 66 (124)
....|+.+.|.|.-... +.-.|.|+|.+. .+ ...++..........+. ......|.+++.+|.|
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~-gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-NTFFLVVTAANISHDG 100 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC-CeEEEEEEeeeecCCc
Confidence 45679999999986522 334588999432 11 11111111111111111 2234456677999999
Q ss_pred EEEEEeEeCC
Q psy8666 67 VYWCLARNSV 76 (124)
Q Consensus 67 ~y~C~~~~~~ 76 (124)
.|+|......
T Consensus 101 tY~C~fQkge 110 (221)
T PHA03376 101 NYLCRMKLGE 110 (221)
T ss_pred eEEEEEEcCC
Confidence 9999888654
No 164
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.67 E-value=0.0022 Score=35.17 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=24.3
Q ss_pred EEcCCCccCCeEEEEEeEe-CCccceeeeEEEEE
Q psy8666 56 VVHGKKEQDGGVYWCLARN-SVGTAVSRNATLQV 88 (124)
Q Consensus 56 ~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~~l~v 88 (124)
.|.+++.+|.|.|.|...+ +.|.. +..+.|.|
T Consensus 66 ~i~nl~~~D~G~Y~C~v~t~P~g~~-~~~~~L~V 98 (99)
T cd05886 66 SLSRLELEDEGVYICEFATFPTGNR-ESQLNLTV 98 (99)
T ss_pred EEcCCccccCEEEEEEEEeCCCCCe-EEEEEEEE
Confidence 4567799999999999999 45544 55666665
No 165
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.61 E-value=0.0018 Score=35.15 Aligned_cols=70 Identities=20% Similarity=0.393 Sum_probs=41.9
Q ss_pred ecCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 4 AKNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 4 ~~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
..|+...|.|.+.+. |.. .+.|+++|..+.... .........+++..+...+ .+...+...|.|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~--~~~~~~~~~dgTy~~~s~L-~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGV--VSTELIPNGDWTYQILVML-ETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCc--eecceEECCCCcEEEEEEE-EEcCCCCCEEEEEEEeCC
Confidence 357789999999985 544 579999998765320 0111112233343333332 224456778999988754
No 166
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.51 E-value=0.0025 Score=33.89 Aligned_cols=70 Identities=30% Similarity=0.480 Sum_probs=40.1
Q ss_pred CCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEE--EEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666 6 NEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGVYWCLARNSVGT 78 (124)
Q Consensus 6 G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~d~g~y~C~~~~~~~~ 78 (124)
|+.+.+.|.+ .+.|.|.++|+.++...... ..........+.... ...+...+..+...+.|.+.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVAS---NTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEE---EEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeee---eeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 4589999976 57799999999988776211 001112223333222 1222222334678899999987643
No 167
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.44 E-value=0.0025 Score=32.89 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=34.3
Q ss_pred CEEEEEeeeccCCC--eEEEEeCCE----EeeccC------C---CCCceEEEccC-CcEEEEEEEcCCCccCCeEEEEE
Q psy8666 8 PVTLNCKAEGKPEP--TIEWYKDGE----LVETSK------S---DAKSQRVILPT-GSLFFLRVVHGKKEQDGGVYWCL 71 (124)
Q Consensus 8 ~~~l~C~~~~~p~p--~v~w~k~g~----~~~~~~------~---~~~~~~~~~~~-~~~~~~~~i~~~~~~d~g~y~C~ 71 (124)
++.|.|.......+ .+.|++... .+.... . ....+...... ........|.+++.+|.|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 36899988765443 789998432 111100 0 00111111111 12223345678899999999995
No 168
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.43 E-value=0.0026 Score=34.43 Aligned_cols=68 Identities=22% Similarity=0.391 Sum_probs=41.8
Q ss_pred cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
.|....|.|.+.+. |.. .++|.|+|..+. .. .........+++.+....+ .+...+...|.|.+....
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~--~~~~~~p~~d~tyq~~s~l-~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KV--EQSDLSFSKDWTFYLLKST-EFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-Cc--EECcEEECCCCCEEEEEEE-EECCCCCCeEEEEEEECC
Confidence 35567899999985 443 479999999865 21 1122222334444433332 235677888999988743
No 169
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.42 E-value=0.00059 Score=39.59 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=31.8
Q ss_pred EcCCCccCCeEEEEEeEeCCccceeeeEEEEEEeeeeeeee
Q psy8666 57 VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97 (124)
Q Consensus 57 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~ 97 (124)
|.+++..|.|.|.|.+.+..+.. ...+.|.|..+|.+...
T Consensus 5 i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~ 44 (139)
T cd05771 5 LPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLS 44 (139)
T ss_pred ECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEe
Confidence 56679999999999999877776 66788888887766433
No 170
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.40 E-value=0.0022 Score=37.16 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=38.9
Q ss_pred cCCCEEEEEeeecc-CC-CeEEEEeCCEEeecc---CCC-CCceEEEccCCcEEEEE--EEcCCCccCCeEEEEEeEeCC
Q psy8666 5 KNEPVTLNCKAEGK-PE-PTIEWYKDGELVETS---KSD-AKSQRVILPTGSLFFLR--VVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 5 ~G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~---~~~-~~~~~~~~~~~~~~~~~--~i~~~~~~d~g~y~C~~~~~~ 76 (124)
.|+.+.|.|.+.+. |. +.+.|+++|...... ... .........++...... .+......+...|.|.+....
T Consensus 52 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 52 IEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred cCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 57788999999886 54 479999998542210 000 00111122334433322 222212234678999987754
No 171
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.40 E-value=0.0057 Score=33.34 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.3
Q ss_pred EEcCCCccCCeEEEEEeEeCC
Q psy8666 56 VVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 56 ~i~~~~~~d~g~y~C~~~~~~ 76 (124)
.|.+++.+|.|.|.|......
T Consensus 63 ~i~nvt~~D~G~Y~C~~~t~P 83 (96)
T cd05889 63 SFNNATEEDVGLYCCSLVTYP 83 (96)
T ss_pred EEcCCCcccCEEEEEEEEeCC
Confidence 456779999999999987753
No 172
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.37 E-value=0.0037 Score=33.93 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=39.8
Q ss_pred cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
.++...|.|.+.+. |.. .++|.++|..+.... .........+++..+...+ .+...+...|.|.+....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~--~~~~~~~~~Dgty~~~s~L-~v~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGV--SETRYYPRQDLSFQKFSYL-NFTPEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCce--EEeeeEeCCCCcEEEEEEE-EEECCCCCeEEEEEEeCC
Confidence 35557999999985 543 579999998765310 0011112233333333222 224556779999988753
No 173
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.28 E-value=0.0029 Score=34.67 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=39.9
Q ss_pred cCCCEEEEEeeecc-C-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCcc---CCeEEEEEeEeCC
Q psy8666 5 KNEPVTLNCKAEGK-P-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ---DGGVYWCLARNSV 76 (124)
Q Consensus 5 ~G~~~~l~C~~~~~-p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---d~g~y~C~~~~~~ 76 (124)
.++.+.|.|.+.+. | .-.+.|+++|..+.... .........+++......+.- ... +...|.|.+....
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~--~~~~~~~~~dgty~~~s~L~v-~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGV--QTSTTEQQSDNTYSLSSYLTL-TKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECCEECcccE--eccccEECCCCCEEEEEEEEE-cHHHhCCCCeEEEEEEecC
Confidence 35678999999875 5 34689999998874221 001111222444433332211 232 4688999988754
No 174
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.22 E-value=0.01 Score=33.26 Aligned_cols=30 Identities=30% Similarity=0.713 Sum_probs=24.0
Q ss_pred ecCCCEEEEEeeecc-CC-CeEEEEeCCEEee
Q psy8666 4 AKNEPVTLNCKAEGK-PE-PTIEWYKDGELVE 33 (124)
Q Consensus 4 ~~G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~ 33 (124)
..|+.++|.|.+.+. |. -.++|+|||..+.
T Consensus 19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~ 50 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELS 50 (111)
T ss_pred CCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence 357778999999875 54 4789999999875
No 175
>KOG3515|consensus
Probab=97.21 E-value=0.00042 Score=50.14 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=52.8
Q ss_pred EecCCCEEEEEeeeccC-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 3 VAKNEPVTLNCKAEGKP-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
+..|+.+.|.|.+.++| .+.+.|++.++... .+.....+..+.+... .+...++|.|.+.|..+....
T Consensus 19 ~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-------~~~~~~~~~~~~~~~~----~~~~~~~~~c~a~ns~~~~~~ 87 (741)
T KOG3515|consen 19 LRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-------GRYATIADPTLVTTGD----VRDTVAELNCRAFNSVGMPSR 87 (741)
T ss_pred hccCCcceeeeecCCCCCCcceEEEecCcccc-------cccccccCCceeeecc----hhhhhhhhhhhhcccccCcee
Confidence 46799999999998775 56799999876544 1222223334433333 567778899999988766655
Q ss_pred eeEEEEEEeee
Q psy8666 82 RNATLQVAVVI 92 (124)
Q Consensus 82 ~~~~l~v~~~~ 92 (124)
+...+.+.++|
T Consensus 88 ~~~~l~v~~~p 98 (741)
T KOG3515|consen 88 CPMILDVDYPP 98 (741)
T ss_pred cceeeccccCc
Confidence 56666666554
No 176
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.13 E-value=0.0064 Score=32.96 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=38.0
Q ss_pred CCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc---cCCeEEEEEeEeCC
Q psy8666 6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE---QDGGVYWCLARNSV 76 (124)
Q Consensus 6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~d~g~y~C~~~~~~ 76 (124)
.+.+.|.|.+.+. |. -.++|+++|..+.... .........++.......+. +.. .+...|.|.+....
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~--~~s~~~~~~~~Ty~~~S~L~-v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVA--ASTAPQKEEGSTFSTTSELN-VTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEECcCce--eecccEECCCCcEEEEEEEE-EchHHhcCCCeEEEEEEECC
Confidence 3558899999885 54 3579999998763211 11111122233333222221 122 25678999988754
No 177
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.13 E-value=0.0018 Score=35.18 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=36.2
Q ss_pred CEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEE--EEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666 8 PVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGVYWCLARNSVGT 78 (124)
Q Consensus 8 ~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~d~g~y~C~~~~~~~~ 78 (124)
...+.|.+. +.|.+.|.|+++...... .......++.... ...+......|...|.|.+.+....
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~------~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNAN------TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCee------EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 467789865 779999999987321110 1111122333222 2222222345678899999997543
No 178
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.13 E-value=0.0028 Score=34.45 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=35.9
Q ss_pred CEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEE--EEEcCCCccCCeEEEEEeEeCCcc
Q psy8666 8 PVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFL--RVVHGKKEQDGGVYWCLARNSVGT 78 (124)
Q Consensus 8 ~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~d~g~y~C~~~~~~~~ 78 (124)
.....|.+ .|.|.+.|.|+++..... ........++..... ..+......+...|.|.+.+....
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~~~~~~------~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 17 VTVATCVSANGKPPATISWETTLGGEA------ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeCCCCcc------eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 46678987 588999999998721111 011112223332221 111122345568899999987644
No 179
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.04 E-value=0.0039 Score=34.00 Aligned_cols=70 Identities=19% Similarity=0.329 Sum_probs=40.5
Q ss_pred EEecCCCEEE-EEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEE--EEcCCCccCCeEEEEEeEeCCc
Q psy8666 2 VVAKNEPVTL-NCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLR--VVHGKKEQDGGVYWCLARNSVG 77 (124)
Q Consensus 2 ~~~~G~~~~l-~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~d~g~y~C~~~~~~~ 77 (124)
.+.+|+.+.+ .|.+ .+.|.+.|.|+.+...... .......++...... .+...+..|...+.|.+.....
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~------~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE------SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCccc------eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 3456777777 7875 5789999999986433221 111122233332222 2222245677889999988654
No 180
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.04 E-value=0.0046 Score=34.05 Aligned_cols=70 Identities=21% Similarity=0.478 Sum_probs=38.6
Q ss_pred cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEcc--CCcEEEEEEEcCCCc---cCCeEEEEEeEeCC
Q psy8666 5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILP--TGSLFFLRVVHGKKE---QDGGVYWCLARNSV 76 (124)
Q Consensus 5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~---~d~g~y~C~~~~~~ 76 (124)
.+..+.|.|.+.|. |.. .+.|+|+|..+..... ......... +++..+...+. +.. .+...|.|.+....
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~-~~~~~~~~~~~dgTy~~~s~L~-v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKY-VTTAPMQEPGGNESYFLYSKLT-VSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccc-cccCcccccCCCCeEEEEEEEE-EcHHHhcCCCcEEEEeEeCC
Confidence 46789999999986 443 4699999987643210 000111111 23333332221 133 24577999988754
No 181
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.99 E-value=0.0019 Score=32.43 Aligned_cols=51 Identities=27% Similarity=0.517 Sum_probs=31.6
Q ss_pred ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666 4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN 74 (124)
Q Consensus 4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~ 74 (124)
.-|+.+.+.|+..+ ..+.|++++..+... ......... . ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~---~~i~W~~n~~~~~g~------------~~~~~~~~~----~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQGS------------DEKYLSLNH----F-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCC---CCceEEeCCccCCCC------------CceEEeecc----C-CCCceEEEEeCC
Confidence 46889999997542 228999998544421 111111111 3 778999998754
No 182
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.99 E-value=0.012 Score=30.91 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=40.5
Q ss_pred cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666 5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG 77 (124)
Q Consensus 5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~ 77 (124)
.++.+.|.|.+.+. |.. .+.|+++|..+.... ...... ..++.......+ .+...+...|.|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~---~~~~~~~~~dgty~~~s~l-~v~~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGV---ETTPPPPNSDGTYSVTSSL-TVTWNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTE---EEEEEEEETTSEEEEEEEE-EEETTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeee---eecccccccccceeeeEEE-EecCCCCCEEEEEEEECCC
Confidence 47789999999876 544 589999998765321 011111 233333332221 2234556689999887543
No 183
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.84 E-value=0.025 Score=30.80 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=36.0
Q ss_pred CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCcc-CCeEEEEEeEeC
Q psy8666 6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ-DGGVYWCLARNS 75 (124)
Q Consensus 6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-d~g~y~C~~~~~ 75 (124)
+....|.|.+.+. |.. .++|.++|..+.... .... ......+...... ..+... ....|.|.+...
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~--~~~~-~~~~~dty~~~S~-L~vt~~~~~~~ysC~V~H~ 84 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILGS--QKSE-KDKDNDVYSTTSW-LTVTKDSLGKKFRCIYKHE 84 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECcCCe--Eecc-EecCCCEEEEEEE-EEECchhCCCeEEEEEEEC
Confidence 4568999999985 543 479999998754210 0011 1112222222222 122333 345599998874
No 184
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.69 E-value=0.023 Score=30.93 Aligned_cols=68 Identities=13% Similarity=0.254 Sum_probs=38.2
Q ss_pred cCCCEEEEEeeecc--CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCcc---CCeEEEEEeEeCC
Q psy8666 5 KNEPVTLNCKAEGK--PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ---DGGVYWCLARNSV 76 (124)
Q Consensus 5 ~G~~~~l~C~~~~~--p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---d~g~y~C~~~~~~ 76 (124)
.|+.+.|.|.+.+. |.. .++|.|++....... . .......+++.++...+ .+... +...|.|.+....
T Consensus 13 ~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~--~-~~~~~~~dgty~~~s~l-~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 13 LTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKAS--I-QPPESHNNATLSVTSTL-NVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred cCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEE--e-cccccCCCCCEEEEEEE-EeCHHHccCCCcEEEEEECCC
Confidence 47889999999988 433 479999875332110 0 11112234444433332 12333 3567999988754
No 185
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.61 E-value=0.024 Score=30.99 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=22.9
Q ss_pred EecCCCEEEEEeeec-cCC--CeEEEEeCCEEee
Q psy8666 3 VAKNEPVTLNCKAEG-KPE--PTIEWYKDGELVE 33 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~-~p~--p~v~w~k~g~~~~ 33 (124)
+..|..+++.|.+.+ .|. ..+.|++....+.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~ 45 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLP 45 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceec
Confidence 457999999999864 354 4588998665555
No 186
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.48 E-value=0.061 Score=30.35 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=38.9
Q ss_pred CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccC-CcEEEEEEEcCCCcc----CCeEEEEEeEeCCcc
Q psy8666 6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPT-GSLFFLRVVHGKKEQ----DGGVYWCLARNSVGT 78 (124)
Q Consensus 6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~----d~g~y~C~~~~~~~~ 78 (124)
++.+.|.|.+.+. |.. .+.|+|+|..+..... . .......+ +.......+ .+... +...|.|.+......
T Consensus 18 ~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~-~-~~~~~~~~~gTYs~~S~L-~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 18 KRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVA-T-DPQALRENTSTYSISSRL-RVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred CCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcc-c-ccceecCCCCeEEEEEEE-EEChHHhccCCCeEEEEEEEeCCc
Confidence 5568999999886 543 6899999987653210 0 01111222 233222221 22332 257899998876433
No 187
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.27 E-value=0.029 Score=28.49 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=28.3
Q ss_pred CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN 74 (124)
Q Consensus 6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~ 74 (124)
.+.+.+.|.. ..++.|++ |...... .+..+... .......|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~-----------~~~tlnLG----s~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV-----------SNTLLDLG----SRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc-----------cccEEecc----CcccCCCcceEecCcc
Confidence 4468889955 35699999 5543321 01111111 1135667999998776
No 188
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.00 E-value=0.1 Score=28.31 Aligned_cols=67 Identities=21% Similarity=0.398 Sum_probs=36.7
Q ss_pred CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC---CeEEEEEeEeCC
Q psy8666 6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD---GGVYWCLARNSV 76 (124)
Q Consensus 6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d---~g~y~C~~~~~~ 76 (124)
++.+.|.|.+.+. |.. .++|+|+|.. ... . .........++.......+ .+...+ ...|.|.+....
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~-~-~~~~~~~~~dgty~~~s~L-~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TSG-V-KTYPAVLQSGGLYTASSQL-TVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE-CCC-c-EECCCEeCCCCCEEEEEEE-EEeHHHcCCCCcEEEEEEeCC
Confidence 4568999999886 443 4789999987 311 0 0011111113333322221 123443 567999988753
No 189
>KOG1480|consensus
Probab=95.97 E-value=0.0043 Score=45.12 Aligned_cols=82 Identities=28% Similarity=0.471 Sum_probs=52.9
Q ss_pred EecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 3 VAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 3 ~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
+..+....+.|.. .+.|...+.|++++...... .+........+ ++..++..|.|.|+|.+.|..+..++
T Consensus 141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd-----~n~~~~~d~~l----i~~~arlsd~~nytc~a~ni~~~r~~ 211 (909)
T KOG1480|consen 141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPD-----ANVIRASDHNL----IISQARLSDSGNYTCEATNIVAKRKS 211 (909)
T ss_pred ecccccccccccCcccchhhhhhccccCCCCCcc-----ccchhhhcCCc----cccchhhhhcccceeeeehhhccccc
Confidence 3455667777774 57788889999998765531 11112222333 23444889999999999999988765
Q ss_pred eeEEEEEEeeee
Q psy8666 82 RNATLQVAVVIF 93 (124)
Q Consensus 82 ~~~~l~v~~~~~ 93 (124)
....+.+.....
T Consensus 212 ~~~~v~vyv~gg 223 (909)
T KOG1480|consen 212 DPATVQVYVNGG 223 (909)
T ss_pred cceEEEEEEcCc
Confidence 555555544433
No 190
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.84 E-value=0.15 Score=28.80 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=39.6
Q ss_pred EEecCCCEEEEEeeeccCCC---eEEEEeCCE-E--eeccC-----CC--CCceEE-EccCCcEEEEEEEcCCCccCCeE
Q psy8666 2 VVAKNEPVTLNCKAEGKPEP---TIEWYKDGE-L--VETSK-----SD--AKSQRV-ILPTGSLFFLRVVHGKKEQDGGV 67 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p---~v~w~k~g~-~--~~~~~-----~~--~~~~~~-~~~~~~~~~~~~i~~~~~~d~g~ 67 (124)
.+..|..+.|.|...+.... .+.|+|... . .+... +. ...... .-......+...+.+.+.+|.+.
T Consensus 9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~ 88 (115)
T cd05721 9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDI 88 (115)
T ss_pred EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeE
Confidence 46678889999998775443 478998421 1 11110 00 001111 11122223444567779999999
Q ss_pred EEEEe
Q psy8666 68 YWCLA 72 (124)
Q Consensus 68 y~C~~ 72 (124)
|.|..
T Consensus 89 Y~Ca~ 93 (115)
T cd05721 89 YFCKI 93 (115)
T ss_pred EEEEe
Confidence 99953
No 191
>PHA02633 hypothetical protein; Provisional
Probab=95.45 E-value=0.083 Score=26.27 Aligned_cols=38 Identities=18% Similarity=0.474 Sum_probs=24.9
Q ss_pred CCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666 48 TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90 (124)
Q Consensus 48 ~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 90 (124)
...+++... ..+|+|.|.|...|..-.. .-.+.|.|..
T Consensus 17 ~~nLwilpa----~~sDSGiYiC~~rn~t~c~-~~si~l~V~~ 54 (63)
T PHA02633 17 CNNMLILNP----TQSDSGIYMCITKNETYSD-MMKFDLCICL 54 (63)
T ss_pred cccEEEecc----ccccCcEEEEEEcCCCeeE-EEEEEEEEee
Confidence 445555555 8899999999998765443 2345555543
No 192
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.43 E-value=0.13 Score=29.61 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=37.2
Q ss_pred CCCEEEEEeeecc-----CCCeEEEEeCCEEeeccCCCCCceEEEc------------cCCcEEEEEEEcCCCccCCeEE
Q psy8666 6 NEPVTLNCKAEGK-----PEPTIEWYKDGELVETSKSDAKSQRVIL------------PTGSLFFLRVVHGKKEQDGGVY 68 (124)
Q Consensus 6 G~~~~l~C~~~~~-----p~p~v~w~k~g~~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~~d~g~y 68 (124)
.+++.++|.+... +.-.+.|..+++.+....... ...... .+.++.+.. ...-.|.|
T Consensus 27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~-~~~~~~~f~sa~i~~l~kG~aSL~~~~-----~~a~~GnY 100 (130)
T PF08204_consen 27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTN-NKSTSDNFPSAKISELLKGNASLKMDK-----SDAVEGNY 100 (130)
T ss_dssp -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTT-TEEEEGGGTT-BEGGGGGTB--EEEEH-----HHHH-EEE
T ss_pred CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCcc-ceecccCccccchhHhhCCCEEEEEcc-----hhccccce
Confidence 5678899988542 223489999888654321100 000000 011122221 12228999
Q ss_pred EEEeEeCCccceeeeEEEEE
Q psy8666 69 WCLARNSVGTAVSRNATLQV 88 (124)
Q Consensus 69 ~C~~~~~~~~~~~~~~~l~v 88 (124)
+|.+....... ...+.|..
T Consensus 101 TCeVt~~~~eg-e~~i~Lk~ 119 (130)
T PF08204_consen 101 TCEVTELSREG-ETTIELKY 119 (130)
T ss_dssp EEEEEETTEEE-EEEEEEEE
T ss_pred EEEEEecCCCc-eEEEEEEE
Confidence 99999877665 44566655
No 193
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.26 E-value=0.32 Score=26.70 Aligned_cols=67 Identities=19% Similarity=0.324 Sum_probs=36.5
Q ss_pred cCCCEEEEEeeecc--CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc---cCCeEEEEEeEeCCc
Q psy8666 5 KNEPVTLNCKAEGK--PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE---QDGGVYWCLARNSVG 77 (124)
Q Consensus 5 ~G~~~~l~C~~~~~--p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~d~g~y~C~~~~~~~ 77 (124)
.+..+.+.|.+.+. |. -.+.|.++|.. ... . .......++...+... ..+.. .....|.|.+.....
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~---~-t~~~~~~dgTys~~S~-L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAV---Q-TSAESDQCGCYSVSSV-LPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCcc-CcE---E-cCcccCCCCCEEEEEE-EEeCHHHhcCCCeEEEEEECCCc
Confidence 35678999999884 33 25899999875 110 0 1111122333332222 22234 234679999887654
No 194
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.22 E-value=0.5 Score=26.27 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=25.9
Q ss_pred EEcCCCccCCeEEEEEeEeCCccceeeeEEEEEE
Q psy8666 56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVA 89 (124)
Q Consensus 56 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 89 (124)
.|..++..|.|.|.-.+.+..|......+.+.|.
T Consensus 74 lIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 74 LIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred EEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 3677799999999999999999886666666553
No 195
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.28 E-value=0.23 Score=32.02 Aligned_cols=49 Identities=29% Similarity=0.418 Sum_probs=33.9
Q ss_pred CCCeEEEEeC-CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666 19 PEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 19 p~p~v~w~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
..|...|..+ |+.+.. .+...+...+.+.+... ...++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~g-----n~~~nIT~TG~L~~~~F----~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSG-----NSYVNITETGKLMFKNF----QESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCC-----CCeEEEccCceEEeecc----ccccCCceEEEEEEEe
Confidence 4688899874 444442 13445667777766655 8999999999888644
No 196
>PHA03042 CD47-like protein; Provisional
Probab=92.13 E-value=2.2 Score=27.86 Aligned_cols=70 Identities=21% Similarity=0.316 Sum_probs=40.6
Q ss_pred CCCEEEEEeeecc-----CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666 6 NEPVTLNCKAEGK-----PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV 80 (124)
Q Consensus 6 G~~~~l~C~~~~~-----p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~ 80 (124)
.+++.+.|..... -.-.+.|..++........ ....++.+. . ...-.|.|+|.+.+.....
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~--------tn~aSL~~~-f----~~~l~GNYTCEv~~l~n~g- 96 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN--------TNTSSLKFN-F----SKNLSGNYTCEAINKFNKI- 96 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC--------CcceEEEEe-c----cccCCCceeEEEeecccCc-
Confidence 5678889987542 2345899998876542110 001112111 1 3444799999999876655
Q ss_pred eeeEEEEEE
Q psy8666 81 SRNATLQVA 89 (124)
Q Consensus 81 ~~~~~l~v~ 89 (124)
.+...|.-.
T Consensus 97 k~~IeLk~~ 105 (286)
T PHA03042 97 KNTIELQYV 105 (286)
T ss_pred cEEEEEEEE
Confidence 345555544
No 197
>KOG4597|consensus
Probab=91.68 E-value=0.41 Score=33.54 Aligned_cols=73 Identities=23% Similarity=0.254 Sum_probs=45.9
Q ss_pred EecCCCEEEEEeeeccCCCeEEEEeC---CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 3 VAKNEPVTLNCKAEGKPEPTIEWYKD---GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~p~p~v~w~k~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
+-+++..++.|...|.+.+.|+|.+. +..+.-. . ...........+-.+.|.+....|.|-|.|.+.+..|..
T Consensus 208 vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~---~-nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 208 VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR---P-NQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred cccchhhcccccccCCcCceeeeehhhccccceeec---C-ccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 34677889999999999999999752 2221110 0 111111111222233455668899999999999988876
No 198
>KOG3515|consensus
Probab=90.67 E-value=2.8 Score=31.45 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=40.2
Q ss_pred ecCCCEEEEEee--eccCCCeEEEEeCCEEeeccCC-CCC-ceEE---E-ccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666 4 AKNEPVTLNCKA--EGKPEPTIEWYKDGELVETSKS-DAK-SQRV---I-LPTGSLFFLRVVHGKKEQDGGVYWCLARNS 75 (124)
Q Consensus 4 ~~G~~~~l~C~~--~~~p~p~v~w~k~g~~~~~~~~-~~~-~~~~---~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~ 75 (124)
.++..+.+.|.. .+.|.+.+.|+.++........ ... .... . .....+.+..+ +..+.|.|+|.+.+.
T Consensus 110 ~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~----Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 110 VDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVS----RKADNGNYTCPANNR 185 (741)
T ss_pred hcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEE----EecCCceeEcccccc
Confidence 356678888954 3567788999988876543210 000 0000 0 11222333333 788999999999995
No 199
>PHA02982 hypothetical protein; Provisional
Probab=87.26 E-value=4.5 Score=25.57 Aligned_cols=84 Identities=14% Similarity=0.268 Sum_probs=46.0
Q ss_pred ecCCCEEEEEeee-ccCCCeEEEEeCC-EEeeccCC---CCC----------ceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666 4 AKNEPVTLNCKAE-GKPEPTIEWYKDG-ELVETSKS---DAK----------SQRVILPTGSLFFLRVVHGKKEQDGGVY 68 (124)
Q Consensus 4 ~~G~~~~l~C~~~-~~p~p~v~w~k~g-~~~~~~~~---~~~----------~~~~~~~~~~~~~~~~i~~~~~~d~g~y 68 (124)
-.++.+.|.|... +.-..+..|+++. ..+.+... ... .......++. .+...|.+++.+..|=|
T Consensus 37 ~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~-~STLTIkk~~i~N~GCY 115 (251)
T PHA02982 37 TVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGN-SSTFTMKKPDPQNLGCF 115 (251)
T ss_pred cCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEecc-ceeEEeccCCcccCCce
Confidence 3478899999853 3334567899743 33331110 000 0111112222 23334566688999999
Q ss_pred EEEeEeCCccceeeeEEEEE
Q psy8666 69 WCLARNSVGTAVSRNATLQV 88 (124)
Q Consensus 69 ~C~~~~~~~~~~~~~~~l~v 88 (124)
.|.+....+..+.+..-|.|
T Consensus 116 tc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 116 TCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred EEEEecCCCchheeheeeeE
Confidence 99999876555444444444
No 200
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=85.35 E-value=3.8 Score=21.50 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=11.5
Q ss_pred CccCCeEEEEEeE
Q psy8666 61 KEQDGGVYWCLAR 73 (124)
Q Consensus 61 ~~~d~g~y~C~~~ 73 (124)
...|.|.+.|.+.
T Consensus 51 ~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 51 TTEDSGTWVCTAS 63 (80)
T ss_dssp TCGGSEEEEEEEE
T ss_pred CCCCCEEEEEEEc
Confidence 5799999999994
No 201
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=84.50 E-value=10 Score=25.79 Aligned_cols=21 Identities=29% Similarity=0.762 Sum_probs=16.4
Q ss_pred CEEEEEeeecc-CCC-eEEEEeC
Q psy8666 8 PVTLNCKAEGK-PEP-TIEWYKD 28 (124)
Q Consensus 8 ~~~l~C~~~~~-p~p-~v~w~k~ 28 (124)
.+.+.|.+.|. |.. .+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 46899999987 443 4689999
No 202
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=83.38 E-value=5 Score=21.97 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=32.4
Q ss_pred EEEEEe-eeccCCCeEEEEeC--CEEeeccCCCCCceEEEccCCcEEE--EEEEcCCCccCCeEEEEEeEeCC
Q psy8666 9 VTLNCK-AEGKPEPTIEWYKD--GELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGVYWCLARNSV 76 (124)
Q Consensus 9 ~~l~C~-~~~~p~p~v~w~k~--g~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~d~g~y~C~~~~~~ 76 (124)
..-.|. +.|.|++.|+|..+ |.. . .+.....++...+ ..........|.....|.+....
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e-------tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~ 87 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-E-------FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRN 87 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-e-------eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecc
Confidence 344687 56889999999853 332 1 1111122333221 11222225667788889888753
No 203
>PHA03052 Hypothetical protein; Provisional
Probab=82.98 E-value=4.6 Score=20.52 Aligned_cols=31 Identities=23% Similarity=0.562 Sum_probs=23.0
Q ss_pred EEecCCCEEEEEeee-ccC--CCeEEEEeCCEEe
Q psy8666 2 VVAKNEPVTLNCKAE-GKP--EPTIEWYKDGELV 32 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~-~~p--~p~v~w~k~g~~~ 32 (124)
.+..|.++++.|.+. +.| .+.+.|.-|+...
T Consensus 8 ~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 8 VTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred EEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 567899999999975 333 4557788787765
No 204
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=75.00 E-value=11 Score=20.24 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=23.2
Q ss_pred EEecCCCEEEEEeeecc-----CCCeEEEEeCCEEeec
Q psy8666 2 VVAKNEPVTLNCKAEGK-----PEPTIEWYKDGELVET 34 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~-----p~p~v~w~k~g~~~~~ 34 (124)
.+..|.+++..|..... ....+.|..++..++.
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~ 51 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG 51 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh
Confidence 46789999999987532 3456899988876553
No 205
>PHA03270 envelope glycoprotein C; Provisional
Probab=57.00 E-value=69 Score=22.87 Aligned_cols=32 Identities=28% Similarity=0.627 Sum_probs=24.2
Q ss_pred EecCCCEEEEEeeecc-CC--CeEEEEeCCEEeec
Q psy8666 3 VAKNEPVTLNCKAEGK-PE--PTIEWYKDGELVET 34 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~-p~--p~v~w~k~g~~~~~ 34 (124)
+..|++..-.|.+..+ |. ..+.||+|+.....
T Consensus 231 vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 231 VLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFA 265 (466)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 4578999999998765 43 24789999987753
No 206
>PHA03271 envelope glycoprotein C; Provisional
Probab=47.04 E-value=1e+02 Score=22.00 Aligned_cols=32 Identities=19% Similarity=0.446 Sum_probs=24.2
Q ss_pred EecCCCEEEEEeeecc-CCC--eEEEEeCCEEeec
Q psy8666 3 VAKNEPVTLNCKAEGK-PEP--TIEWYKDGELVET 34 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~-p~p--~v~w~k~g~~~~~ 34 (124)
+..|++..-.|.+... |+- .+.||++|.....
T Consensus 257 VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 257 VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATP 291 (490)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 4578999999998765 432 4789999987653
No 207
>COG5475 Uncharacterized small protein [Function unknown]
Probab=42.79 E-value=43 Score=16.35 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=13.9
Q ss_pred ccCCeEEEEEeEeCCccc
Q psy8666 62 EQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 62 ~~d~g~y~C~~~~~~~~~ 79 (124)
....|.|.|.+.+..|..
T Consensus 25 ~ss~Gmy~C~Wf~g~g~~ 42 (60)
T COG5475 25 YSSDGMYECRWFDGYGVK 42 (60)
T ss_pred cccCCeEEEEEecCCCcc
Confidence 344599999999988754
No 208
>PHA03269 envelope glycoprotein C; Provisional
Probab=40.96 E-value=1.4e+02 Score=21.84 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=24.2
Q ss_pred EecCCCEEEEEeeecc-CCC--eEEEEeCCEEeec
Q psy8666 3 VAKNEPVTLNCKAEGK-PEP--TIEWYKDGELVET 34 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~-p~p--~v~w~k~g~~~~~ 34 (124)
+..|++..-.|.+..+ |.- .+.||+|+..+..
T Consensus 339 VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 339 VLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 4579999999998765 432 4789999887663
No 209
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=38.90 E-value=84 Score=22.34 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=22.5
Q ss_pred cCCCccCCeEEEEEeEeCCccceeeeEEEEEEeeeeee
Q psy8666 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95 (124)
Q Consensus 58 ~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~~~~~ 95 (124)
.++...|+|.|+|.-...--. +....+.+...|.+.
T Consensus 86 ~Nvs~sdEGrYrCIFYLn~~E--tyrH~I~vrVmPKId 121 (500)
T PHA02914 86 ENIGEHEDGDFKCIFYLGDNE--SHKHEILVRKAPKID 121 (500)
T ss_pred cCcccccCCcEEEEEEeCCce--eEEEEEEEEEcccee
Confidence 455889999999986654322 344455555555444
No 210
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=38.87 E-value=55 Score=16.42 Aligned_cols=21 Identities=43% Similarity=0.836 Sum_probs=13.7
Q ss_pred EecCCCEEEEEeeeccCCCeEEEEe
Q psy8666 3 VAKNEPVTLNCKAEGKPEPTIEWYK 27 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~p~p~v~w~k 27 (124)
+..|++.+|. |.+...++||+
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4567776665 44556799994
No 211
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=35.35 E-value=78 Score=17.17 Aligned_cols=77 Identities=19% Similarity=0.114 Sum_probs=38.3
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~ 81 (124)
.+..|+.+.+.|...-..+..+.|...-.... .....+-..+. +.+++. .....|..... |....
T Consensus 14 vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~----------~~~g~~W~~f~--LsnV~~--ds~~~C~~~C~-g~Q~~ 78 (91)
T PF03921_consen 14 VVPPGGSVWVNCSTSCPQPEKIGLETSLSKTE----------LDSGPQWKAFQ--LSNVTE--DSSPLCFFNCS-GEQSS 78 (91)
T ss_dssp EEETTEEEEEEEEESSSS-SEEEEESSSEEEE----------EEEETTEEEEE--EEEE-S--CEEEEEEEEET-TEEEE
T ss_pred EECCCCCEEEEEcCCCCCCCcceEEEecCCcc----------cCCCCcEEEEE--EEcccc--CCeEEEEEEcC-CeEEE
Confidence 56789999999987542223344543211111 01111111111 122232 46778988874 45556
Q ss_pred eeEEEEEEeeee
Q psy8666 82 RNATLQVAVVIF 93 (124)
Q Consensus 82 ~~~~l~v~~~~~ 93 (124)
....+.|..+|.
T Consensus 79 ~~~~ItVY~~Pe 90 (91)
T PF03921_consen 79 ASANITVYKPPE 90 (91)
T ss_dssp EEEEEEEEB--S
T ss_pred eEEeeEEeCCCC
Confidence 677888776653
No 212
>KOG3611|consensus
Probab=35.01 E-value=1.6e+02 Score=22.85 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=14.8
Q ss_pred CccCCeEEEEEeEeCCccc
Q psy8666 61 KEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 61 ~~~d~g~y~C~~~~~~~~~ 79 (124)
+..|.|.|.|.+.......
T Consensus 620 q~~~~G~y~c~~~e~~~~~ 638 (737)
T KOG3611|consen 620 QKLDGGTYPCYADESSFVS 638 (737)
T ss_pred eeccCcccccccccCcccc
Confidence 7888999999988755433
No 213
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=33.76 E-value=71 Score=16.25 Aligned_cols=22 Identities=32% Similarity=0.717 Sum_probs=13.6
Q ss_pred EEEEeeeccCCCeEEEEeCCEEee
Q psy8666 10 TLNCKAEGKPEPTIEWYKDGELVE 33 (124)
Q Consensus 10 ~l~C~~~~~p~p~v~w~k~g~~~~ 33 (124)
++.|.... .-.+.||-|+..+-
T Consensus 2 tltC~s~~--sLPiswYcN~TRLl 23 (71)
T PF11049_consen 2 TLTCPSNA--SLPISWYCNGTRLL 23 (71)
T ss_pred ceecCCCC--CCcccEEECCceee
Confidence 35665543 33367999987654
No 214
>KOG0613|consensus
Probab=29.88 E-value=42 Score=27.15 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=42.5
Q ss_pred EecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 3 VAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
...+.-+.+.|...+.+.|. +.|++.+....... .......+........+..+...+.+.|.|.+.|..|..
T Consensus 346 a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~ 419 (1205)
T KOG0613|consen 346 ARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESL----GALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTE 419 (1205)
T ss_pred cccCcceeecccccCCcCCchheeecccccccccc----cccccccccccCcchhhhhcCcccccccccceeccCCcc
Confidence 34566678888888888886 88987654322110 000011111111122233446788899999999988876
No 215
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=29.69 E-value=93 Score=16.30 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=31.1
Q ss_pred CEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79 (124)
Q Consensus 8 ~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~ 79 (124)
...+.+.+.+. .+.+.||-||..+.... ....+ .. .....|.|.-.+....|..
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~----------~~~~~---~~----~~~~~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQ----------PGHQL---FW----QPDRPGEHTLTVVDAQGRS 84 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCC----------CCCeE---Ee----CCCCCeeEEEEEEcCCCCE
Confidence 34455555554 45899999998773210 11111 11 3446788888877776665
No 216
>PHA03189 UL14 tegument protein; Provisional
Probab=29.30 E-value=1.9e+02 Score=19.79 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=14.4
Q ss_pred CccCCeEEEEEeEeCCcc
Q psy8666 61 KEQDGGVYWCLARNSVGT 78 (124)
Q Consensus 61 ~~~d~g~y~C~~~~~~~~ 78 (124)
..+..|.|.|...|....
T Consensus 141 ~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 141 STSTAGMYECVLRNETHG 158 (348)
T ss_pred EecccceEEEEeccccce
Confidence 567789999999997643
No 217
>PHA03240 envelope glycoprotein M; Provisional
Probab=27.59 E-value=1.8e+02 Score=18.82 Aligned_cols=26 Identities=19% Similarity=0.389 Sum_probs=17.0
Q ss_pred EEecCCCEEEEEeeeccCCCeEEEEe
Q psy8666 2 VVAKNEPVTLNCKAEGKPEPTIEWYK 27 (124)
Q Consensus 2 ~~~~G~~~~l~C~~~~~p~p~v~w~k 27 (124)
++..|+++.|.-.-.-.|.-.+.||+
T Consensus 34 t~r~G~nVTLga~~~lhpgq~v~Wy~ 59 (258)
T PHA03240 34 TTREGDPLLLGGGHGLGAGQKAHWYK 59 (258)
T ss_pred ccccCCceeeCCcccCCCCCEEEEEe
Confidence 45678888886433223556789998
No 218
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=27.55 E-value=1.1e+02 Score=16.58 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=23.6
Q ss_pred CEEEEEeeeccC-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666 8 PVTLNCKAEGKP-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN 74 (124)
Q Consensus 8 ~~~l~C~~~~~p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~ 74 (124)
...|.|...++. ...++.-++-..+.++......-........-..-...+....+..|.|.|....
T Consensus 17 etSL~Ci~s~W~s~esitigrd~~~~~nqh~~plEv~~de~R~~ak~vvwkrekas~~~GayyCegk~ 84 (96)
T PF10430_consen 17 ETSLTCIASDWSSHESITIGRDFEALMNQHQEPLEVPQDETRPHAKKVVWKREKASEAIGAYYCEGKV 84 (96)
T ss_dssp -EEEEEEE-SS--SS--EEEE-TTTSTT-------EEEETTSSSEEEEEE-TTT-SS--EEEEEEEEE
T ss_pred ceeEEEEecCCcCCCcEEecccchhhhhcccCCcccccCCCCcccceEEEEeeccccccceEEEEEEe
Confidence 458899887664 3345554543222221111000111112222111111112234557999998774
No 219
>PHA03273 envelope glycoprotein C; Provisional
Probab=23.53 E-value=3e+02 Score=20.11 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=24.1
Q ss_pred EecCCCEEEEEeeecc-CC--CeEEEEeCCEEee
Q psy8666 3 VAKNEPVTLNCKAEGK-PE--PTIEWYKDGELVE 33 (124)
Q Consensus 3 ~~~G~~~~l~C~~~~~-p~--p~v~w~k~g~~~~ 33 (124)
+..|++..-.|.+... |+ ..+.||+||..+.
T Consensus 247 vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 247 SLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 4578999999998765 43 2478999999776
Done!