RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8666
(124 letters)
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 132 bits (333), Expect = 2e-41
Identities = 57/91 (62%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 61 -KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
D GVY C+ARN +G AVS +A+L+VA
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 126 bits (317), Expect = 9e-38
Identities = 60/91 (65%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+VV KNEP TLNCK EGKPEPTIEW+KDGE V T+ + KS RV G+LFF R + GK
Sbjct: 19 LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTN--EKKSHRVQFKDGALFFYRTMQGK 76
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
KEQDGG YWC+A+N VG AVSR+A+LQ+AV+
Sbjct: 77 KEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
Score = 84.9 bits (210), Expect = 8e-22
Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 1 MVVAKNEPVTLNC-KAEGKPEPTIEWYKDGELVETSKS---DAKSQRVILPTGSLFFLRV 56
VAK E L C +G PEPT+ W KDG ++ K+ A S+ I+ G+L V
Sbjct: 118 TRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177
Query: 57 VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ D G Y C+A+N VGT S A L V V
Sbjct: 178 ----EPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 125 bits (315), Expect = 2e-37
Identities = 57/92 (61%), Positives = 74/92 (80%), Gaps = 1/92 (1%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 61 -KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
D GVY C+ARN +G AVS +A+L+VA++
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEVAIL 110
Score = 88.3 bits (219), Expect = 4e-23
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 1 MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
++VA EP + C+ G PEPTI W KDG ++ +R+ + G L
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK-----DERITIRGGKLMITYT--- 172
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
++ D G Y C+ N VG S A L V F+
Sbjct: 173 -RKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV 207
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 113 bits (284), Expect = 8e-33
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + C A G P P+I W K+G+ V ++S V+ G + LR+ +
Sbjct: 16 QGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS---RYTVLEQPGGISILRIEPVR 72
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+D Y C+A N VG AVS +ATL +
Sbjct: 73 AGRDDAPYECVAENGVGDAVSADATLTIYE 102
Score = 91.0 bits (226), Expect = 4e-24
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V+ V + CKA G P P I W K+ V+ S R L G L
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNP-----RYSLKDGFLQIENS---- 170
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+E+D G Y C+A NS+GT S+ L V V
Sbjct: 171 REEDQGKYECVAENSMGTEHSKATNLYVKV 200
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 115 bits (290), Expect = 4e-32
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+V + + + C+A+G P P+ W ++ +K + +G+L G+
Sbjct: 27 HIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP--RVSMRRRSGTLVIDFRSGGR 84
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAY 105
E+ G Y C ARN GTA+S LQV+ + +
Sbjct: 85 PEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQ 129
Score = 84.2 bits (208), Expect = 1e-20
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+++A E L C+A G P+PT++W +GE ++++ + + ++ F
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPN---PNREVAGDTIIFRDT---- 374
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ VY C N G ++ NA + V
Sbjct: 375 QISSRAVYQCNTSNEHGYLLA-NAFVSV 401
Score = 75.3 bits (185), Expect = 2e-17
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+V + + L C A G P P I WYK G + + K+ + +L V
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-----KFENFNKALRITNV---- 282
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
E+D G Y+CLA N +G+ + +++V +++
Sbjct: 283 SEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWL 316
Score = 68.7 bits (168), Expect = 6e-15
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 1 MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVH 58
+VV + P+TL C G P P I W T +RV G L+F V
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ-----DKRVSQGHNGDLYFSNV-- 178
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ Y C AR + + + V+
Sbjct: 179 -MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVL 210
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 106 bits (267), Expect = 1e-30
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V++ +PV LNC EG EP I+W KDG +V+ G L V
Sbjct: 12 LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV---- 67
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
+ D G YWC + T +S+ L V V FF
Sbjct: 68 ERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFT 102
Score = 73.7 bits (181), Expect = 1e-17
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 1 MVVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ V N P L+C+A G PEP TI W++ + A S V+ TG
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP---APSPSVLNVTGV--------- 155
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
++ C A N G A SR AT+ +
Sbjct: 156 ---TQSTMFSCEAHNLKGLASSRTATVHL 181
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 110 bits (276), Expect = 3e-30
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG 65
E VTL C+A P T W +G ++ R L G L V +D
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDS----RYRLVAGDLVISNPVK---AKDA 74
Query: 66 GVYWCLARNSVGTAVSRNATLQVAVV 91
G Y C+A N+ GT VSR A+L+ +
Sbjct: 75 GSYQCVATNARGTVVSREASLRFGFL 100
Score = 81.1 bits (200), Expect = 2e-19
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ +C A GKP P + W +DG+ + + R+ + G L F ++
Sbjct: 304 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS------QNRIEVSGGELRFSKL---- 353
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+D G+Y C+A N GT V +A L V
Sbjct: 354 VLEDSGMYQCVAENKHGT-VYASAELTV 380
Score = 69.5 bits (170), Expect = 3e-15
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ VTL C A G P P I+W K + + + L V
Sbjct: 217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ--------TSKWLSSEPLLHIQNV---- 264
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+D G Y C A N G + + +
Sbjct: 265 DFEDEGTYECEAENIKGR-DTYQGRIII 291
Score = 67.6 bits (165), Expect = 1e-14
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 1 MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ + + V C P + W + + V TG+L+ +
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADG--RRFVSQTTGNLYIAKT--- 165
Query: 60 KKEQDGGVYWCLARNSVG----TAVSRNATLQVAV 90
+ D G Y C A + + + S+ + L +A
Sbjct: 166 -EASDLGNYSCFATSHIDFITKSVFSKFSQLSLAA 199
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 110 bits (276), Expect = 3e-30
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ ++ + V L+C+ +G P+P I W +G V+ R + GSL
Sbjct: 19 LDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMD----FRYSVVDGSLLINNPNK--- 71
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
QD G Y C+A NS GT VSR A LQ A +
Sbjct: 72 TQDAGTYQCIATNSFGTIVSREAKLQFAYL 101
Score = 82.2 bits (203), Expect = 7e-20
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ VA E V CKA G+P+PT W K+G+ + T R+ + G+L V
Sbjct: 305 IHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT------RDRIQIEQGTLNITIVN--- 355
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
D G+Y C+A N G S +A L V
Sbjct: 356 -LSDAGMYQCVAENKHGVIFS-SAELSV 381
Score = 73.7 bits (181), Expect = 9e-17
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ K V L C A G P PTI W + DG+ + R G L
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA------RRHKSNGILEIPNF--- 265
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
+++D G Y C+A NS G L ++
Sbjct: 266 -QQEDAGSYECVAENSRGK-NVAKGQLTFYAQPNWV 299
Score = 69.1 bits (169), Expect = 3e-15
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 1 MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVH 58
+ V + + + L C E + W + ++R TG+L+ +V
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD-----NRRFVSQETGNLYIAKV-- 164
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
++ D G Y C+ N+V + +
Sbjct: 165 --EKSDVGNYTCVVTNTVTNHKVLGPPTPLILR 195
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 102 bits (257), Expect = 9e-29
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ C+A G P P I W K G+ V + + + GS LR+ +
Sbjct: 16 QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ----RFEVIEFDDGSGSVLRIQPLR 71
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+D +Y C+A N+VG S + L V
Sbjct: 72 TPRDEAIYECVASNNVGEI-SVSTRLTVLR 100
Score = 92.2 bits (229), Expect = 1e-24
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
VV + T+ C A G P+P I W+KD V+TS ++ + +++ G+L +
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQS--- 174
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+E D G Y C+A NS GT S A L V
Sbjct: 175 -EESDQGKYECVATNSAGTRYSAPANLYV 202
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 106 bits (265), Expect = 1e-28
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVH-- 58
+ + + CKA G P P I W + DG V D R I G L F
Sbjct: 15 DFSNSTGAEIECKASGNPMPEIIWIRSDGTAV----GDVPGLRQISSDGKLVFPPFRAED 70
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
++E VY CLARN G+ +SR+ ++ V ++ +
Sbjct: 71 YRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEA 108
Score = 81.1 bits (200), Expect = 2e-19
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + ++L C A+G P P+ WYK E ++ + RV +G+L
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA---- 277
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
+D G Y C+ NSVG S L V +
Sbjct: 278 VVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAK 311
Score = 78.4 bits (193), Expect = 2e-18
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 17/89 (19%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V P C+ G P T+ W KDG+ + S+ L V
Sbjct: 317 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------SVLRIESVK--- 361
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVA 89
++D G+Y C RN +A + +A L++
Sbjct: 362 -KEDKGMYQCFVRNDRESAEA-SAELKLG 388
Score = 66.9 bits (163), Expect = 3e-14
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 1 MVVAKNEPVTLNCKAE---GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV 57
V + + C + W+ D E ++ + ++LP+G L V
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREV- 171
Query: 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
E Y C ++ + +AT V+
Sbjct: 172 --GPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 203
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 106 bits (265), Expect = 1e-28
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ +N P L C EG + W KDG+ + + + GSL FLR
Sbjct: 17 LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH---NAALRKDEGSLVFLRP---- 69
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
+ D G Y C A G A SR + + +I +
Sbjct: 70 QASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA 105
Score = 86.5 bits (214), Expect = 2e-21
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
M+ + + C P ++K+G+ V + D ++ L F
Sbjct: 222 MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT---- 277
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+D GVY C N VG + L V
Sbjct: 278 LPEDEGVYTCEVDNGVGKPQKHSLKLTVVS 307
Score = 80.0 bits (197), Expect = 5e-19
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+VV + + VT+ CK G P P + W + + + R + L V
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS-------GGRATVTDSGLVIKGV---- 367
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
K D G Y C A N G +QV
Sbjct: 368 KNGDKGYYGCRATNEHGDKYF-ETLVQV 394
Score = 73.0 bits (179), Expect = 2e-16
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 1 MVVAKNEPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQR--VILPTGSLFFLRVV 57
+ P L+C P+P I W K + + R P G+L+F V
Sbjct: 110 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVT 169
Query: 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ D Y C A+N+ ++ V
Sbjct: 170 -KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGV 202
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 104 bits (261), Expect = 5e-28
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
V + V LNC AE + P I+W KDG ++ D ++ LP GSL ++H
Sbjct: 31 AVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDD---RKQQLPNGSLLIQNILHS 87
Query: 60 K-KEQDGGVYWCLAR-NSVGTAVSRNATLQVAVVIFFIS 96
+ + D G+Y C A G+ +SR A + VA + F+S
Sbjct: 88 RHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLS 126
Score = 90.3 bits (224), Expect = 1e-22
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ V L C+ G P PTI W K+ + + D S+ V+LP+G+L R+ +
Sbjct: 132 TAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD--SRVVVLPSGALQISRL----Q 185
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
D GVY C ARN T A +++
Sbjct: 186 PGDSGVYRCSARNPASTRTGNEAEVRILS 214
Score = 81.4 bits (201), Expect = 1e-19
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ ++ + C GKP PT+ W K+G++V S I+ +L L VV
Sbjct: 322 LYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS-----DYFQIVGGSNLRILGVV--- 373
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ D G Y C+A N G +A L V
Sbjct: 374 -KSDEGFYQCVAENEAGN-AQSSAQLIV 399
Score = 76.8 bits (189), Expect = 8e-18
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
++ + + L C G P P+ W + E+++ + +L +L V
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLR----SKKYSLLGGSNLLISNV---- 282
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ D G Y C+ +S +A L V V
Sbjct: 283 TDDDSGTYTCVVTYKNEN-ISASAELTVLV 311
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 99.4 bits (248), Expect = 1e-27
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E T C E P+P I W ++ L++ + I G L + V
Sbjct: 17 VDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR----YSIRENGQLLTILSV--- 69
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
++ D G+Y C A N VG AV LQV +
Sbjct: 70 EDSDDGIYCCTANNGVGGAVESCGALQVKM 99
Score = 89.0 bits (221), Expect = 1e-23
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + + L C G P+P++ W K + + S+ +L +GSL V
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN-----SRIAVLESGSLRIHNV---- 160
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+++D G Y C+A+NS+GTA S+ L+V V
Sbjct: 161 QKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 99.9 bits (249), Expect = 7e-27
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + C+A G P+P + W K G+ V + + + + + LR+ +
Sbjct: 16 QIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ----RFETIEFDESAGAVLRIQPLR 71
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+D VY C+A+NSVG + +A L V
Sbjct: 72 TPRDENVYECVAQNSVGEI-TVHAKLTVLR 100
Score = 94.5 bits (235), Expect = 9e-25
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
VV + T+ C A G P+P I W+KD V+ S S+ + + L +G+L
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK--QLRSGALQIESS---- 171
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+E D G Y C+A NS G S A L V V
Sbjct: 172 EETDQGKYECVATNSAGVRYSSPANLYVRV 201
Score = 71.4 bits (175), Expect = 4e-16
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V + C A G P P ++W + E + + + L V
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPED------DMPVGRNVLELTDV---- 264
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+D Y C+A +S+G A + V
Sbjct: 265 --KDSANYTCVAMSSLGVI-EAVAQITV 289
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 101 bits (253), Expect = 2e-26
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFF--LRVV 57
+ + + + CKA G P P I W + DG V D R I G L F R
Sbjct: 49 IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG----DVPGLRQISSDGKLVFPPFRAE 104
Query: 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
++E VY CLARN G+ +SR+ ++ V ++
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYY 141
Score = 82.3 bits (203), Expect = 1e-19
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E + + C G P +I W +D + + ++ + P G+L V
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPIN-----RKQKVFPNGTLIIENVE--- 587
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
+ D Y C+A+N G + + +QV V+ I F
Sbjct: 588 RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPF 624
Score = 81.5 bits (201), Expect = 2e-19
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAK-SQRVILPTGSLFFLRVVHG 59
A+ + CKA+G P+P + W K D K S + + G+L +
Sbjct: 724 KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNI--- 780
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
++ + G Y C A N +G+ +S + V
Sbjct: 781 -QKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 81.1 bits (200), Expect = 3e-19
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ V L C A G P P I W DG+ + + Q V + + +L +
Sbjct: 440 TMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHA 499
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
DGG+Y C+A++ VG A +A L V + +
Sbjct: 500 N-DGGLYKCIAKSKVGVA-EHSAKLNVYGLPYIRQ 532
Score = 80.0 bits (197), Expect = 7e-19
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + + L C A+G P P WYK E ++ + RV +G+L
Sbjct: 258 KTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA---- 313
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
+D G Y C+ NSVG L V +
Sbjct: 314 VVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAK 347
Score = 79.6 bits (196), Expect = 9e-19
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V P C+ G P T+ W KDG+ + S+ L V
Sbjct: 353 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------SVLRIESV---- 396
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVI 92
K++D G+Y C RN +A + +A L++
Sbjct: 397 KKEDKGMYQCFVRNDRESAEA-SAELKLGGRF 427
Score = 68.0 bits (166), Expect = 1e-14
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 1 MVVAKNEPVTLNCKAE---GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV 57
V + + C + W+ D E ++ + ++LP+G L V
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREV- 206
Query: 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
E Y C ++ + +AT V+
Sbjct: 207 --GPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 238
Score = 67.7 bits (165), Expect = 2e-14
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ +TL+C G P I+W DG+ + + RV L V
Sbjct: 629 GPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLG-ITTSRVGRRGSVLTIEAV--- 684
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
+ G + C ARN G L V V +I
Sbjct: 685 -EASHAGNFTCHARNLAGHQ-QFTTPLNVYVPPRWI 718
Score = 28.7 bits (64), Expect = 0.47
Identities = 2/21 (9%), Positives = 9/21 (42%)
Query: 61 KEQDGGVYWCLARNSVGTAVS 81
+ + ++ +A + G+
Sbjct: 7 RLKWLMLFAAVALIACGSQTL 27
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 93.3 bits (232), Expect = 4e-26
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
VA + L+C A G P PTI W KDG LV T S+ L G L
Sbjct: 18 QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ----DSRIKQLENGVLQIRYA---- 69
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFR 99
K D G Y C+A G A + +A ++V + R
Sbjct: 70 KLGDTGRYTCIASTPSGEA-TWSAYIEVQEFGVPVQPPR 107
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 94.6 bits (235), Expect = 2e-25
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + V L C+A G P +W+K + + T L F V
Sbjct: 28 KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----------NTSELIFNAV---- 72
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+D G Y C N+ S+ + L V +
Sbjct: 73 HVKDAGFYVCRVNNNFTFEFSQWSQLDVCDI 103
Score = 77.2 bits (190), Expect = 8e-19
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 15/90 (16%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + L C A G P P +W+K+ + V
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-----------KLYMVPYV---- 172
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ G YWC N + S+ + +
Sbjct: 173 DLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 90.9 bits (226), Expect = 3e-25
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V + + ++CK G P P + W DG+ V + ++++ + L +
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD----SAHKMLVRENGVHSLIIEPVT 74
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
D G+Y C+A N G S + L VA
Sbjct: 75 SR-DAGIYTCIATNRAGQN-SFSLELVVAA 102
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 88.9 bits (221), Expect = 1e-24
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
M + + ++ K G P P + WY +G V++ ++I+ L L +
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD----DLHKMIVSEKGLHSLIFEVVR 70
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
D G Y C+A+N G A + L V
Sbjct: 71 AS-DAGAYACVAKNRAGEA-TFTVQLDV 96
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 88.2 bits (219), Expect = 2e-24
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
VA VTL C+ +P P I W KDG + + P+ L +
Sbjct: 20 GAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP-----------LPPSPVLILPEI---- 64
Query: 61 KEQDGGVYWCLARNSVGTA-VSRNATLQV 88
QD G Y C+A +S SR ++ +
Sbjct: 65 GPQDQGTYSCVATHSSHGPQESRAVSISI 93
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 89.8 bits (223), Expect = 5e-24
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ ++ E C A G+PE + GE + ++ + V+ G L + +
Sbjct: 12 VELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST-----QRVVVQKEGVRSRLTIYN-A 65
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
+D G+Y C A ++ G L++ + F
Sbjct: 66 NIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR 100
Score = 77.1 bits (190), Expect = 5e-19
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E + C+ P P + W E V T + + +L +L L +
Sbjct: 106 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN---RFAMLANNNLQILNI---- 158
Query: 61 KEQDGGVYWCLARNSVGTAV-SRNATLQVAV 90
+ D G+Y C R + R+ + V V
Sbjct: 159 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 189
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 89.9 bits (223), Expect = 6e-24
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + + CK+ G P P W K V S++ + I+ + L +V+ +
Sbjct: 102 ENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQ 161
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+D G Y C A NS+G+A S + L+V V
Sbjct: 162 ITEDPGEYECNATNSIGSA-SVSTVLRVRV 190
Score = 66.8 bits (163), Expect = 4e-15
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 15/101 (14%)
Query: 1 MVVAKNEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
++ PVTL C W K+G + + R +
Sbjct: 13 IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT-------RKNASNMEYRINKP-- 63
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFR 99
+ +D G Y C+ + V NAT++V R
Sbjct: 64 --RAEDSGEYHCVY-HFVSAP-KANATIEVKAAPDITGHKR 100
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 89.8 bits (223), Expect = 7e-24
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V TL CK G P+P ++WY+ G+ + +D R+ G L +
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI---IADGLKYRIQEFKGGYHQLIIASVT 70
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ D VY A N G+ S A+L+V V
Sbjct: 71 DD-DATVYQVRATNQGGSV-SGTASLEVEV 98
Score = 83.6 bits (207), Expect = 2e-21
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + E V++ GKP+P I W K +L++ + ++ T S L +G
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-----GHYQVIVTRSFTSLVFPNGV 168
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ +D G Y A+N G + L V
Sbjct: 169 ERKDAGFYVVCAKNRFGID-QKTVELDV 195
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 93.3 bits (232), Expect = 1e-23
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ A EP+TL CK +G PE I WYK+ + ++ + + SL +V
Sbjct: 15 VEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAY--KMQFKNNVASLVINKV---- 68
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
D G Y C A NSVG S +A L + SF
Sbjct: 69 DHSDVGEYTCKAENSVGAVAS-SAVLVIKERKLPPSF 104
Score = 78.7 bits (194), Expect = 2e-18
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
PV C+ G + WYKDGEL++ + I +L L+
Sbjct: 112 HETLGFPVAFECRINGSEPLQVSWYKDGELLKDDAN--LQTSFIHNVATLQILQT----D 165
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ G Y C A N +GTA S +A L ++
Sbjct: 166 QSHVGQYNCSASNPLGTA-SSSAKLTLSE 193
Score = 78.7 bits (194), Expect = 2e-18
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+V ++E CK G PE + WYKD ++ S + L +
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF--RMSFVESVAVLEMYNL----S 355
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+D G Y C A N+ G+A S + +L+V
Sbjct: 356 VEDSGDYTCEAHNAAGSA-SSSTSLKVKE 383
Score = 76.4 bits (188), Expect = 1e-17
Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ +A E T C G I W KD + ++ T +L L+V
Sbjct: 207 VDLALGESGTFKCHVTGTAPIKITWAKDNREIRP--GGNYKMTLVENTATLTVLKV---- 260
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSA 104
+ D G Y C A N G S +A L V FI
Sbjct: 261 TKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIV 303
Score = 76.0 bits (187), Expect = 2e-17
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
K V L C+ +G P + W+KD + + + I+ L + +++
Sbjct: 396 TLKGADVHLECELQGTPPFQVSWHKDKRELRSG-----KKYKIMSENFLTSIHILNVDSA 450
Query: 63 QDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
D G Y C A N VG+ + ++ + F+
Sbjct: 451 -DIGEYQCKASNDVGSD-TCVGSITLKAPPRFVK 482
Score = 73.3 bits (180), Expect = 1e-16
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E V L EG ++ W+KD + SD +L F R
Sbjct: 487 ISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRE-SDNIWISYSENIATLQFSRA---- 541
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ + G Y C +N GT ATL V
Sbjct: 542 EPANAGKYTCQIKNEAGTQ-ECFATLSV 568
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 86.7 bits (215), Expect = 1e-23
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+A + L CKA G P P I W K+G + I G+L +
Sbjct: 18 QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR----DPRATIQEQGTLQIKNL---- 69
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ D G Y C+A +S G S +A L V
Sbjct: 70 RISDTGTYTCVATSSSGE-TSWSAVLDV 96
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 90.3 bits (224), Expect = 3e-23
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ ++ E C A G+PE + GE + ++ + V+ G L + +
Sbjct: 14 VELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST-----QRVVVQKEGVRSRLTIYNAN 68
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
E D G+Y C A ++ G L++ + F
Sbjct: 69 IE-DAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE 103
Score = 81.4 bits (201), Expect = 6e-20
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E + C+ P P + W E V T + + +L +L L +
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN---RFAMLANNNLQILNI---- 160
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
+ D G+Y C R + + + V IS
Sbjct: 161 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISM 197
Score = 76.4 bits (188), Expect = 4e-18
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E +T +C+A G PEP I W+++G+L+E + + + L +
Sbjct: 204 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN----EKYILKGSNTELTVRNI---- 255
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
DGG Y C A N G + A LQV V
Sbjct: 256 INSDGGPYVCRATNKAGED-EKQAFLQVFV 284
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 88.2 bits (219), Expect = 3e-23
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E L+C+ G+P P I+WY+ G+ + S + + G L V+ +
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS-----RKYKMSSDGRTHTLTVMTEE 71
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFK 101
+E D GVY C+A N VG ++ L + F + K
Sbjct: 72 QE-DEGVYTCIATNEVGEV-ETSSKLLLQATPQFHPGYPLK 110
Score = 80.9 bits (200), Expect = 2e-20
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
A + L+ G+P P + W+ +L++ S+ + I T L + +
Sbjct: 113 YYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSE------NITIENTEHYTHLVMKNV 166
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+++ G Y N GT + +++
Sbjct: 167 QRKTHAGKYKVQLSNVFGTVDA-ILDVEI 194
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 90.9 bits (225), Expect = 3e-23
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 2 VVAKNEPVTLNCK-------AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFL 54
+ EPV L C A P + W+K+ + R+ G+L+ L
Sbjct: 29 FRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE--ETRMWAQDGALWLL 86
Query: 55 RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
++D G Y C RN+ + L+V
Sbjct: 87 PA----LQEDSGTYVCTTRNASYCD-KMSIELRVFE 117
Score = 61.6 bits (149), Expect = 2e-12
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
L+ K + I+WYKD L++ + + T L V +D G Y
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDN---EKFLSVRGTTHLLVHDV----ALEDAGYYR 196
Query: 70 CLARNSVGTA---VSRNATLQV 88
C+ + ++R+ L++
Sbjct: 197 CVLTFAHEGQQYNITRSIELRI 218
Score = 57.0 bits (137), Expect = 6e-11
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 20/105 (19%)
Query: 1 MVVAKNEPVTLNCKA---EGKPEPTIEWYKDGE-----------LVETSKSDAKSQRVIL 46
+ + +T+ CK G P T+ W+ + + E + +
Sbjct: 236 ISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENY 295
Query: 47 PTGSLFFLRVVHGKKEQD-GGVYWCLARNSVGTAVSRNATLQVAV 90
L F V +D + C+ N++ + T++
Sbjct: 296 IEVPLIFDPV----TREDLHMDFKCVVHNTLSFQ-TLRTTVKEHH 335
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 86.9 bits (215), Expect = 1e-22
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 1 MVVAKNEPVTLNCKAEGK-PEPTIEWYKDGELVETSKS-------DAKSQRVILPTGSLF 52
+ A+ TL C+ + + P + W +DG+++E + S Q + L
Sbjct: 12 ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLR 71
Query: 53 FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
+ + D G Y CL T VS+ + + + +F+
Sbjct: 72 ITSL----QLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE 111
Score = 79.6 bits (196), Expect = 8e-20
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
VA N P L+C+A+G PEP + W +D + T+ P SL +
Sbjct: 116 RTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATA-------PGHGPQRSLHVPGL--- 165
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVA 89
+ C A N+ G SR AT+ V
Sbjct: 166 ---NKTSSFSCEAHNAKGVTTSRTATITVL 192
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 86.2 bits (213), Expect = 3e-22
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK------SDAKSQRVILPTGSLFFL 54
+ + +N PV L+C G P +EW D + + RV + F
Sbjct: 14 VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 73
Query: 55 RVVHGKKEQDGGVYWCLARNSVGTAVSR-NATLQVAV 90
V +D G Y C+ G + L V V
Sbjct: 74 SV----TREDTGTYTCMVSEEGGNSYGEVKVKLIVLV 106
Score = 71.9 bits (176), Expect = 7e-17
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETS-----KSDAKSQRVILPTGSLFFLR 55
L C +G P W+KDG ++ T+ S + TG L F
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177
Query: 56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ D G Y C ARN GT + +++ V
Sbjct: 178 L----SASDTGEYSCEARNGYGTP-MTSNAVRMEAV 208
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 82.7 bits (205), Expect = 4e-22
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V+ + KA G+P PT W KDG+ + + + FFL +H
Sbjct: 16 TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG-----GKYKLSEDKGGFFLE-IHKT 69
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
D G+Y C +NS G+ S + L + +
Sbjct: 70 DTSDSGLYTCTVKNSAGSVSS-SCKLTIKAI 99
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 85.4 bits (211), Expect = 6e-22
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQ-----RVILPTGSLFFL 54
+ V +NE + L C G P +EW G +++ RV + + F
Sbjct: 11 VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFS 70
Query: 55 RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
V +D G Y C+ G ++ + V
Sbjct: 71 SV----TRKDNGEYTCMVSEEGGQNYGE-VSIHLTV 101
Score = 70.4 bits (172), Expect = 3e-16
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 3 VAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDA------KSQRVILPTGSLFFLR 55
V L C +G P W+KDG + T+ + S + +G L F
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175
Query: 56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
V D G Y+C A+N GTA R+ + V
Sbjct: 176 V----TAFDSGEYYCQAQNGYGTA-MRSEAAHMDAV 206
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 84.1 bits (208), Expect = 1e-21
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKP-EPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
++ E C+ G + I W+ +GE + ++ + +L
Sbjct: 12 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA-- 69
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
D G+Y C+ GT +++ + F
Sbjct: 70 --NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFK 104
Score = 76.8 bits (189), Expect = 6e-19
Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E + C PTI W G V K + ++L L +
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDV---RFIVLSNNYLQIRGI---- 162
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
K+ D G Y C R +QV V
Sbjct: 163 KKTDEGTYRCEGRILAR-GEINFKDIQVIV 191
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 81.2 bits (201), Expect = 1e-21
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 15/89 (16%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ + L C A G P P +W+K+ + V
Sbjct: 14 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----------TKKLYMVPYV----D 58
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ G YWC N + S+ + +
Sbjct: 59 LEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 85.9 bits (213), Expect = 1e-21
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ +A E T C G I W KD + ++ T +L L+V
Sbjct: 15 VDLALGESGTFKCHVTGTAPIKITWAKDNREIRP--GGNYKMTLVENTATLTVLKV---- 68
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
+ D G Y C A N G S +A L V FI
Sbjct: 69 TKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFI 102
Score = 79.8 bits (197), Expect = 2e-19
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+V ++E CK G PE + WYKD ++ S + L +
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK--FRMSFVESVAVLEMYNL----S 163
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+D G Y C A N+ G+ S + +L+V
Sbjct: 164 VEDSGDYTCEAHNAAGS-ASSSTSLKVKE 191
Score = 79.0 bits (195), Expect = 5e-19
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ K V L C+ +G P + W+KD + + + I+ L + +++
Sbjct: 202 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSG-----KKYKIMSENFLTSIHILNVD 256
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
D G Y C A N VG+ + ++ +
Sbjct: 257 SA-DIGEYQCKASNDVGSY-TCVGSITL 282
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 83.3 bits (206), Expect = 2e-21
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E +T +C+A G PEP I W+++G+L+E + + + L +
Sbjct: 14 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN----EKYILKGSNTELTVRNI---- 65
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFF 98
DGG Y C A N G + A LQV V I
Sbjct: 66 INSDGGPYVCRATNKAGED-EKQAFLQVFVQPHIIQLK 102
Score = 74.1 bits (182), Expect = 9e-18
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD--AKSQRVILPTGSLFFLRVVHG 59
+N VTL C AEG+P P I W + + ++ D + + L +
Sbjct: 105 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 164
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
K D G Y C A + +G ++ L +
Sbjct: 165 KLS-DSGRYDCEAASRIGGH-QKSMYLDI 191
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 80.4 bits (199), Expect = 3e-21
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + + V ++ + +G+P+P + W ++ + V + G L LR++ +
Sbjct: 15 QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRR----FAEEAEGGLCRLRILAAE 70
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ D G Y C A N G A L+V
Sbjct: 71 RG-DAGFYTCKAVNEYGARQC-EARLEV 96
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 82.8 bits (205), Expect = 4e-21
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+VV + T G P P + W++DG+++ TS L V
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAV---- 70
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ + G Y A N G A + A L V
Sbjct: 71 TKANSGRYSLKATNGSGQA-TSTAELLV 97
Score = 77.5 bits (191), Expect = 4e-19
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
M V + V L + G P P +++Y+DG +++S I G L+ L +
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSL-----DFQISQEGDLYSLLIAEAY 167
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
E D G Y A NSVG A S A L V
Sbjct: 168 PE-DSGTYSVNATNSVGRATST-AELLV 193
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 80.1 bits (198), Expect = 4e-21
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V L C G+P P + W K G+ + S + G+ L +
Sbjct: 23 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-----ERLSFPADGAEHGLLLTAAL 77
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
D GVY C ARN+ G A + A + V
Sbjct: 78 PT-DAGVYVCRARNAAGEAYA-AAAVTVLE 105
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 82.1 bits (203), Expect = 5e-21
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E + C+ P P + W E V T ++ +L +L L +
Sbjct: 12 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD---NRFAMLANNNLQILNI---- 64
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ D G+Y C R + + + V
Sbjct: 65 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 95
Score = 77.9 bits (192), Expect = 3e-19
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ E +T +C+A G PEP I W+++G+L+E + + + L +
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN----EKYILKGSNTELTVRNI----I 160
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
DGG Y C A N G + A LQV V
Sbjct: 161 NSDGGPYVCRATNKAGED-EKQAFLQVFV 188
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 78.9 bits (195), Expect = 1e-20
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + + L C G P P I W +G+ ++ ++S L +
Sbjct: 21 CAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS-----TCEAGVAELHIQDAL--- 72
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+D G Y CLA N++G +A + V
Sbjct: 73 -PEDHGTYTCLAENALGQVSC-SAWVTV 98
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 78.9 bits (195), Expect = 1e-20
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
M V + E +C +G+P PT+ W + G+++ TS + + V
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT--KYKSTFEISSV---- 77
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ D G Y + NS G + TL +
Sbjct: 78 QASDEGNYSVVVENSEGKQEA-EFTLTI 104
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 81.9 bits (202), Expect = 2e-20
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V V C A G P PT+ W K+G+ + +V SL V
Sbjct: 29 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI-GGYKVRNQHWSLIMESV---- 83
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
D G Y C+ N G+ ++ L V
Sbjct: 84 VPSDKGNYTCVVENEYGS-INHTYHLDV 110
Score = 72.2 bits (177), Expect = 7e-17
Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV---------ILPTGSL 51
V CK +P I+W K E + + L
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 187
Query: 52 FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
V E D G Y C N +G A +++A L V
Sbjct: 188 ALFNV----TEADAGEYICKVSNYIGQA-NQSAWLTV 219
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 81.9 bits (202), Expect = 2e-20
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V V C A G P P+I W K+G ++ SL V
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE-HRIGGIKLRHQQWSLVMESV---- 79
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
D G Y C+ N G+ + + TL V
Sbjct: 80 VPSDRGNYTCVVENKFGS-IRQTYTLDV 106
Score = 73.4 bits (180), Expect = 4e-17
Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 15/98 (15%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV----------ILPTGS 50
V +CK +P I+W K E+ + + V +
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 51 LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
L V E+DGG Y C A N +G A + L V
Sbjct: 184 LRLANV----SERDGGEYLCRATNFIGVA-EKAFWLSV 216
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 84.3 bits (208), Expect = 2e-20
Identities = 10/94 (10%), Positives = 25/94 (26%), Gaps = 8/94 (8%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + +TL + + W + S+ L++
Sbjct: 59 EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH---FDLQNRGVVSMVILKM----T 111
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
E G Y ++ + T+ + + +
Sbjct: 112 ETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYT 144
Score = 74.7 bits (183), Expect = 4e-17
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
L C +E PEP +EW E+ K + ++
Sbjct: 150 FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEE---SPAVVKKEEKVL-------H 199
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
E G C ARN +G +R T+ +
Sbjct: 200 ELFGTDIRCCARNELGRECTRLFTIDLNQTPQT 232
Score = 67.4 bits (164), Expect = 1e-14
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 13/100 (13%)
Query: 1 MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQ----RVILPTGSLFFLR 55
+ + EP+ + CKA + W + + +E S R ++ F
Sbjct: 237 LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSS 296
Query: 56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
V D G Y C + + A + + F
Sbjct: 297 V----ARNDTGYYTCSSSKHPSQS----ALVTIVEKGFIN 328
Score = 67.4 bits (164), Expect = 2e-14
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 11/86 (12%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
+ + E + + + P+ W + Q+ + S+ +
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC------EQKGLDNGYSISKFCN----HK 387
Query: 63 QDGGVYWCLARNSVGTAVSRNATLQV 88
G Y A N ++ TL +
Sbjct: 388 HQPGEYIFHAENDDAQF-TKMFTLNI 412
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 84.2 bits (208), Expect = 2e-20
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + V C+ E + T W+ + + + S ++ +L V
Sbjct: 122 PVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPR----LQLSNGNRTLTLFNV----T 172
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
D Y C +N V S + L V
Sbjct: 173 RNDTASYKCETQNPVSARRSDSVILNVLY 201
Score = 79.6 bits (196), Expect = 9e-19
Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 18/90 (20%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
E + L+C A P W+ +G T LF +
Sbjct: 214 SYRSGENLNLSCHAASNPPAQYSWFVNG-------------TFQQSTQELFIPNI----T 256
Query: 62 EQDGGVYWCLARNSVGTA-VSRNATLQVAV 90
+ G Y C A NS + T+ V
Sbjct: 257 VNNSGSYTCQAHNSDTGLNRTTVTTITVYA 286
Score = 74.6 bits (183), Expect = 5e-17
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 18/98 (18%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
++L+C A P W DG + T LF +
Sbjct: 392 YYRPGVNLSLSCHAASNPPAQYSWLIDG-------------NIQQHTQELFISNI----T 434
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFR 99
E++ G+Y C A NS SR + V
Sbjct: 435 EKNSGLYTCQANNSASG-HSRTTVKTITVSAELPKPSI 471
Score = 74.2 bits (182), Expect = 7e-17
Identities = 17/103 (16%), Positives = 26/103 (25%), Gaps = 18/103 (17%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELV--------------ETSKSDAKSQRVILPT 48
VA+ + V L + WYK + T + +I P
Sbjct: 11 VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 49 GSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
SL + + D G Y S +V
Sbjct: 71 ASLLIQNI----IQNDTGFYTLHVIKSDLVNEEATGQFRVYPE 109
Score = 74.2 bits (182), Expect = 8e-17
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + V C+ E + T W+ +G+ + S ++ +L V
Sbjct: 478 PVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPR----LQLSNGNRTLTLFNV----T 528
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
D Y C +NSV S TL V
Sbjct: 529 RNDARAYVCGIQNSVSANRSDPVTLDVLY 557
Score = 71.1 bits (174), Expect = 1e-15
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 18/90 (20%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ L+C + P P W +G T LF ++
Sbjct: 569 SSYLSGANLNLSCHSASNPSPQYSWRING-------------IPQQHTQVLFIAKI---- 611
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ G Y C N + + + V
Sbjct: 612 TPNNNGTYACFVSNLATGR-NNSIVKSITV 640
Score = 68.4 bits (167), Expect = 7e-15
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + V L C+ E + T W+ + + + S ++ +L L V
Sbjct: 299 NPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPR----LQLSNDNRTLTLLSV---- 349
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
D G Y C +N + S L V
Sbjct: 350 TRNDVGPYECGIQNELSVDHSDPVILNVLY 379
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 82.2 bits (203), Expect = 3e-20
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ VTL C A+G PEPT+ W KDGE +E + D + + L V
Sbjct: 206 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNV---- 261
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ D Y C+A N G + L+V
Sbjct: 262 DKNDEAEYVCIAENKAGEQ-DASIHLKVFA 290
Score = 81.8 bits (202), Expect = 4e-20
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E + C PTI W G V K + ++L L +
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD---VRFIVLSNNYLQIRGI---- 162
Query: 61 KEQDGGVYWCLARNSVGTAV-SRNATLQVAV 90
K+ D G Y C R + ++ + V V
Sbjct: 163 KKTDEGTYRCEGRILARGEINFKDIQVIVNV 193
Score = 81.5 bits (201), Expect = 6e-20
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKP-EPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
++ E C+ G + I W+ +GE + ++ + +L
Sbjct: 12 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA-- 69
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
D G+Y C+ GT +++ + F +
Sbjct: 70 --NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKN 105
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 76.7 bits (189), Expect = 8e-20
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V V C A G P PT+ W K+G+ + +V SL VV
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-HRIGGYKVRNQHWSLIMESVV--- 73
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
D G Y C+ N G+ ++ L V
Sbjct: 74 -PSDKGNYTCVVENEYGS-INHTYHLDV 99
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 76.6 bits (189), Expect = 1e-19
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + PVT C+ G P+P I W+KDG+ + QR + T SL
Sbjct: 18 YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAST--- 74
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
D G Y +A N G L V V
Sbjct: 75 -LDDDGNYTIMAANPQGRISC-TGRLMVQAV 103
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 76.2 bits (188), Expect = 2e-19
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTG--SLFFLRVVH 58
V + + GKP+P EWYK+G +E + L V
Sbjct: 15 QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE---RSDRIYWYWPEDNVCELVIRDV-- 69
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+D A N G S A L V
Sbjct: 70 --TGEDSASIMVKAINIAGETSSH-AFLLV 96
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 76.2 bits (188), Expect = 2e-19
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTG--SLFFLRVVH 58
+ E + ++C A G P P I W+KD E + ++L G +L RV
Sbjct: 20 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS------GIVLKDGNRNLTIRRV-- 71
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+++D G+Y C A + +G A A +
Sbjct: 72 --RKEDEGLYTCQACSVLGCAKV-EAFFII 98
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 75.9 bits (187), Expect = 2e-19
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + + V L C+ P P + W ++ E+V+ + + +L V
Sbjct: 25 KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDV---- 80
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
++D G Y A N G N L V
Sbjct: 81 NKKDAGWYTVSAVNEAGVTTC-NTRLDVTA 109
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 80.0 bits (197), Expect = 3e-19
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V V C A G P P+I W K+G ++ SL VV
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI-GGIKLRHQQWSLVMESVV--- 188
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
D G Y C+ N G+ + + TL V
Sbjct: 189 -PSDRGNYTCVVENKFGS-IRQTYTLDV 214
Score = 80.0 bits (197), Expect = 3e-19
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 1 MVVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+V + V L+C G P W KDG + S+ RV++ L L H
Sbjct: 18 LVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE------RVLVGPQRLQVLNASH- 70
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVA 89
+D G Y C R + + + A
Sbjct: 71 ---EDSGAYSCRQRLTQRVLCHFSVRVTDA 97
Score = 71.2 bits (174), Expect = 5e-16
Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELV-ETSKSDAKSQRVILPTGSLFFLRVVHG 59
V +CK +P I+W K E+ D +L T
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
Query: 60 K------KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+D G Y CLA NS+G + +A L V
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFS-HHSAWLVV 325
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 75.4 bits (186), Expect = 3e-19
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + + + +T+ C G+P P + W G + S + + I T L L ++ +
Sbjct: 15 ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIH---SQEQGRFHIENTDDLTTLIIMDVQ 71
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
K+ DGG+Y N G+ S + +
Sbjct: 72 KQ-DGGLYTLSLGNEFGSD-SATVNIHI 97
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 80.9 bits (199), Expect = 3e-19
Identities = 11/94 (11%), Positives = 27/94 (28%), Gaps = 8/94 (8%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + +TL + + W + R + S+ L++
Sbjct: 59 EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV---VSMVILKM----T 111
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
E G Y ++ + T+ + + +
Sbjct: 112 ETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYT 144
Score = 76.3 bits (187), Expect = 2e-17
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
L C +E PEP +EW E+ K + P +V+H
Sbjct: 150 FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEE-------SPAVVKKEEKVLH--- 199
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
E G C ARN +G +R T+ +
Sbjct: 200 ELFGTDIRCCARNELGRECTRLFTIDLNQ 228
Score = 70.9 bits (173), Expect = 9e-16
Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 11/90 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + E + + + P+ W + Q+ + S+
Sbjct: 336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC------EQKGLDNGYSISKFCN---- 385
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ G Y A N ++ TL +
Sbjct: 386 HKHQPGEYIFHAENDDAQF-TKMFTLNIRR 414
Score = 70.1 bits (171), Expect = 2e-15
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-----PTGSLFFLRV 56
V+A+ +C ++G P P+ W K + + G
Sbjct: 418 VLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSST 477
Query: 57 VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
++ + G + C A NS+GT+ L FI
Sbjct: 478 LNMSEAIKGFLVKCCAYNSLGTS-CETILLNSPGPFPFI 515
Score = 65.5 bits (159), Expect = 7e-14
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 13/98 (13%)
Query: 2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSK----SDAKSQRVILPTGSLFFLRV 56
+ EP+ + CKA + W + + +E S + R ++ F V
Sbjct: 238 FLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297
Query: 57 VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
D G Y C + +A + + F
Sbjct: 298 ----ARNDTGYYTCSSSKHPSQ----SALVTIVEKGFI 327
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 75.1 bits (185), Expect = 4e-19
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+V + + L C+ +I W +DG + S R + +
Sbjct: 13 FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAE------SNRTRITGEEVEVQDS---- 61
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
D G+Y C+ + G+ + ++ V
Sbjct: 62 VPADSGLYACVTSSPSGSD-TTYFSVNV 88
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 74.1 bits (182), Expect = 8e-19
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
++V + + L C+ +I W +DG + S R + +
Sbjct: 19 LLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVE------SNRTRITGEEVEVRDS---- 67
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
D G+Y C+ + G+ + ++ V
Sbjct: 68 IPADSGLYACVTSSPSGSD-TTYFSVNV 94
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 74.7 bits (183), Expect = 9e-19
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQ------RVILPTGSLF 52
V+ C A + T W D E ++ ++ + + ++ T L
Sbjct: 20 QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILR 79
Query: 53 FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
V + G Y C+ N G++ S A L +
Sbjct: 80 LRNV----EFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold,
transmembrane, glycoprotein, signal, complex
(immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 78.6 bits (193), Expect = 1e-18
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + NE C TI WYKD S + R+ L+F+
Sbjct: 16 VSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQ--ASRIHQHKEKLWFVPA---- 69
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
K +D G Y+C+ RNS + + +
Sbjct: 70 KVEDSGHYYCVVRNSSYC-LRIKISAKFVE 98
Score = 75.1 bits (184), Expect = 2e-17
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 8/97 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGS-------LFF 53
M V + L C G+ W +G +++ + + +
Sbjct: 219 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 278
Query: 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
L + + + C A+N+ G + L V
Sbjct: 279 LNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIYPV 314
Score = 59.0 bits (142), Expect = 1e-11
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 16/97 (16%)
Query: 2 VVAKNEPVTLNC------KAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLR 55
+ L C K E P ++WYKD + + + L +
Sbjct: 114 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-----NIHFSGVKDRLIVMN 168
Query: 56 VVHGKKEQDGGVYWCLARNSVG-TAVSRNATLQVAVV 91
V E+ G Y C A + ++ +
Sbjct: 169 V----AEKHRGNYTCHASYTYLGKQYPITRVIEFITL 201
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 79.0 bits (194), Expect = 1e-18
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E + ++C A G P P I W+KD E + + +L RV
Sbjct: 676 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED----SGIVLKDGNRNLTIRRV---- 727
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+++D G+Y C A + +G A A +
Sbjct: 728 RKEDEGLYTCQACSVLGCA-KVEAFFII 754
Score = 77.5 bits (190), Expect = 5e-18
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E V + K G P P I+WYK+G +E++ I L + V
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN-------HTIKAGHVLTIMEV---- 388
Query: 61 KEQDGGVYWCLARNSVGTAV-SRNATLQVAV 90
E+D G Y + N + S +L V V
Sbjct: 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYV 419
Score = 74.4 bits (182), Expect = 6e-17
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLR----V 56
+ ++ E + LNC A + I++ + + ++ + +GS
Sbjct: 234 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 293
Query: 57 VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
+ G D G+Y C A + + T + ++V F
Sbjct: 294 IDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVAFG 333
Score = 61.3 bits (148), Expect = 2e-12
Identities = 19/122 (15%), Positives = 27/122 (22%), Gaps = 29/122 (23%)
Query: 2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAK-------------------- 40
TL C P P I WY E ++
Sbjct: 434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQG 493
Query: 41 -------SQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
+ L G + + + +Y C A N VG R + V
Sbjct: 494 GNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR-GERVISFHVTRGPE 552
Query: 94 FI 95
Sbjct: 553 IT 554
Score = 60.5 bits (146), Expect = 5e-12
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + N + + C G+ + W + S S+ + + G +
Sbjct: 41 LTIKANTTLQITC--RGQRDLDWLWPNNQ-----SGSEQRVEVTECSDGLFCKTLTIPKV 93
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
D G Y C R + +V +Q F S
Sbjct: 94 IGNDTGAYKCFYRETDLASVIY-VYVQDYRSPFIASV 129
Score = 60.5 bits (146), Expect = 5e-12
Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 15/115 (13%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK-- 60
+ E V+L C A+ + WYK G V +L+ L
Sbjct: 561 PTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNS 620
Query: 61 ------------KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
QD G Y CLA++ Q+ V+ L
Sbjct: 621 TNDILIMELKNASLQDQGDYVCLAQDRKTKKRHC-VVRQLTVLERVAPTITGNLE 674
Score = 50.9 bits (121), Expect = 1e-08
Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 12/92 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTI--EWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
+ KN+ V + C Y + V + +
Sbjct: 138 ITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN-----RISWDSKKGF----TIP 188
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
G+ +C A+ + + S + V V
Sbjct: 189 SYMISYAGMVFCEAKINDESYQS-IMYIVVVV 219
Score = 29.3 bits (65), Expect = 0.34
Identities = 1/18 (5%), Positives = 6/18 (33%)
Query: 64 DGGVYWCLARNSVGTAVS 81
++ C+ + +
Sbjct: 8 AVALWLCVETRAASVGLP 25
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 73.5 bits (181), Expect = 2e-18
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
V E V L K G T W K + ++ S+ + + + + L ++
Sbjct: 17 QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE------HMKVENSENGSKLTILAA 70
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
++E G Y L N +G+ L V
Sbjct: 71 RQE-HCGCYTLLVENKLGSR-QAQVNLTV 97
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 72.7 bits (179), Expect = 4e-18
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + + KP ++WY +G ++ S S+ T + L ++
Sbjct: 18 HRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES-----SKIHYTNTSGVLTLEILDCH 72
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ D G Y + N G A ATL V
Sbjct: 73 TD-DSGTYRAVCTNYKGEASDY-ATLDV 98
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 72.5 bits (178), Expect = 4e-18
Identities = 23/91 (25%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 1 MVVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
V VT C A+ P T+ W + S R + G L V
Sbjct: 20 QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-------RAMDFNGILTIRNV--- 69
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ D G Y C N ATL V V
Sbjct: 70 -QPSDAGTYVCTGSNMFAMD-QGTATLHVQV 98
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 74.5 bits (183), Expect = 6e-18
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + VTL C A G P P I W K E + ++ + L +
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA------EISTSGAVLKIFNI---- 172
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ +D G+Y C A N G + A + V
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQ-ARIYV 199
Score = 69.5 bits (170), Expect = 5e-16
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 2 VVAKNEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
V + + + L C + W + V + K + V G+L+ V
Sbjct: 19 RVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD--KRRFVSQTNGNLYIANV--- 73
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ D G Y C + T + + + +
Sbjct: 74 -EASDKGNYSCFVSSPSITKSVFSKFIPLIPI 104
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 74.3 bits (182), Expect = 7e-18
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQR-VILPTGSLFFLRVVH 58
+ + E L CK+E P T WYK + + + + R + + L + +
Sbjct: 93 EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN 152
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
E D G Y C +S G+ TL+V
Sbjct: 153 LNMEADPGQYRCNGTSSKGSD-QAIITLRV 181
Score = 56.6 bits (136), Expect = 3e-11
Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 19/91 (20%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIE--WYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
V + L C W K G +++ LP F
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA---------LPGQKTEFKVD--- 56
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ G Y C+ A +Q+
Sbjct: 57 -SDDQWGEYSCVFLPEPMG----TANIQLHG 82
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 71.6 bits (176), Expect = 7e-18
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 9/89 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
+ + L G P+PT W + + + S +
Sbjct: 12 IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP------ELLVDAKSSTTSIFFPSA 65
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
K+ D G Y +N +G + V
Sbjct: 66 KRA-DSGNYKLKVKNELGED-EAIFEVIV 92
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 74.5 bits (183), Expect = 9e-18
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + V + C+ P TI W++DG+L+ +S L
Sbjct: 28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPD---- 83
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
E D G Y C A N +G S L A
Sbjct: 84 SENDFGNYNCTAVNRIGQE-SLEFILVQADT 113
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 73.0 bits (179), Expect = 1e-17
Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTG--SLFFLRVVH 58
M V + +CK EG P+P + W+KD V K Q G SL V
Sbjct: 51 MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV---KESRHFQIDYDEEGNCSLTISEVC- 106
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
D Y C A NS+G A A L V
Sbjct: 107 ---GDDDAKYTCKAVNSLGEATCT-AELLV 132
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 71.7 bits (176), Expect = 1e-17
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E + L +GKP P + W K G ++TS+ ++ ++FF+R
Sbjct: 34 YIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTS----DFDTVFFVRQA--- 86
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
D G Y + AT+++ VV
Sbjct: 87 ARSDSGEYELSVQIENMKD---TATIRIRVV 114
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 73.8 bits (181), Expect = 1e-17
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + + + + L C G P P + W K+ + + + + G + +
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT----DHCNLKFEAGRTAYFTINGVS 182
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
D G Y + +N G+ + + T+ V +
Sbjct: 183 TA-DSGKYGLVVKNKYGSE-TSDFTVSVFI 210
Score = 58.7 bits (142), Expect = 7e-12
Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 17/100 (17%)
Query: 2 VVAKNEPVTLNCKAEG----------KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSL 51
+ + + AEG + + W +G + S + TG
Sbjct: 4 IALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-----DRVKTGVTGEQ 58
Query: 52 FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+L++ D G Y + + L
Sbjct: 59 IWLQINEPTPN-DKGKYVMELFDGKTGH-QKTVDLSGQAY 96
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 74.6 bits (183), Expect = 3e-17
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 10/90 (11%)
Query: 3 VAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V V L CK K E I WYKD + ++ G L + K
Sbjct: 18 VTGECNVLLKCKVANIKKETHIVWYKDEREISVD------EKHDFKDGI-CTLLITEFSK 70
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ D G+Y + ++ G SR L
Sbjct: 71 K-DAGIYEVILKDDRGKDKSR-LKLVDEAF 98
Score = 73.4 bits (180), Expect = 8e-17
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + + + + L C G P P + W K+ + + + + G + +
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD----DHCNLKFEAGRTAYFTINGVS 287
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
D G Y + +N G+ + + T+ V +
Sbjct: 288 TA-DSGKYGLVVKNKYGSE-TSDFTVSVFI 315
Score = 58.4 bits (141), Expect = 2e-11
Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 17/99 (17%)
Query: 2 VVAKNEPVTLNCKAEGK----------PEPTIEWYKDGELVETSKSDAKSQRVILPTGSL 51
+ + + AEG + + W +G + S + TG
Sbjct: 109 IALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-----DRVKTGVTGEQ 163
Query: 52 FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+L++ D G Y + + L
Sbjct: 164 IWLQINEPTPN-DKGKYVMELFDGKTGH-QKTVDLSGQA 200
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 74.4 bits (183), Expect = 3e-17
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + E V++ GKP+P I W K +L++ + ++ T S L +G
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-----GHYQVIVTRSFTSLVFPNGV 168
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ +D G Y A+N G + L V
Sbjct: 169 ERKDAGFYVVCAKNRFGID-QKTVELDV 195
Score = 73.6 bits (181), Expect = 5e-17
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V TL CK G P+P ++WY+ G+ + + Q L V
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV---- 69
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ D VY A N G+ A+L+V V
Sbjct: 70 TDDDATVYQVRATNQGGSVSGT-ASLEVEV 98
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 69.8 bits (171), Expect = 6e-17
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETS---KSDAKSQRVILPTGSLFFLRVVHG 59
+ + +G P+P ++W+ +G ++ S + G L H
Sbjct: 13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH- 71
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ G Y +A+N G + +
Sbjct: 72 ---MNNGDYTLIAKNEYGKD-EKQISAHF 96
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 69.5 bits (170), Expect = 9e-17
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDGELVETSK--SDAKSQRVILPTGSLFFLRVVHGKKEQD 64
+ G P PT+ W +G+ + SK Q + G L F + H +
Sbjct: 21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH----YN 76
Query: 65 GGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
G Y +A+N +GTA ++ F +
Sbjct: 77 NGNYTLIAKNPLGTA-NQTINGHFLKEPFPVD 107
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 73.7 bits (181), Expect = 1e-16
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-----LPTGSLFFLR 55
+N VTL C AEG+P P I W + + ++ D I + SL
Sbjct: 10 ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKD 69
Query: 56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
V K D G Y C A + +G ++ L +
Sbjct: 70 V----KLSDSGRYDCEAASRIGGH-QKSMYLDI 97
Score = 71.0 bits (174), Expect = 8e-16
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ P+ ++C + P +I W +D ++ + L +
Sbjct: 110 YYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL----EIAPT 165
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVA 89
+ D G Y C A N +GT + L +A
Sbjct: 166 SDNDFGRYNCTATNHIGT-RFQEYILALA 193
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 70.8 bits (173), Expect = 2e-16
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEW-YKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+T+ C P P ++W +G + ++ GSL + V
Sbjct: 114 SQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVM--KEKDGSL-SVAVDLS 170
Query: 60 KKEQDGGVYWCLARNSVGTA 79
+ C+ +N A
Sbjct: 171 LPKPWHLPVTCVGKNDKEEA 190
Score = 51.2 bits (122), Expect = 4e-09
Identities = 20/107 (18%), Positives = 27/107 (25%), Gaps = 23/107 (21%)
Query: 7 EPVTLNC---KAEGKPEPTIEWYKDGELVETSKSDAKSQRVILP---------------T 48
E VTL + PE + W+K G E VI T
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 49 GSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
L G Y C + V++ L V +
Sbjct: 67 FFLVVTAA----NISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLS 108
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 72.8 bits (179), Expect = 2e-16
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V + V C+A+G P P I W + + ++KS+ + + P G+L
Sbjct: 395 VFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLT--VFPDGTLEVRYA---- 448
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ QD G Y C+A N+ G S A L V
Sbjct: 449 QVQDNGTYLCIAANAGGND-SMPAHLHV 475
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 68.4 bits (167), Expect = 2e-16
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVE-TSKSDAKSQRVILPTGSLFFLRVVHG 59
E + C P P I W ++E + + + G + L + +
Sbjct: 24 HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI 83
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ +Y C A NS G+ + L+
Sbjct: 84 VRADFQTIYNCTAWNSFGSD-TEIIRLKE 111
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 72.4 bits (177), Expect = 3e-16
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSD---AKSQRVILPTGSLFFLRV 56
+ V E V L + E P+P +W D ++++ I L R+
Sbjct: 323 VFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRL 382
Query: 57 VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
K +GG Y L NS A + + V
Sbjct: 383 ----KGTEGGTYTFLVSNSDVNA-AIAFNVYVNT 411
Score = 68.9 bits (168), Expect = 5e-15
Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV------ILPTGSLFFL 54
+ + L C A G PEPTI+WY + + V P G L
Sbjct: 416 LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQ 475
Query: 55 RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ + G C A N VG S
Sbjct: 476 SSIDSSAFKHNGTVECKAYNDVGK-TSAYFNFAF 508
Score = 68.9 bits (168), Expect = 5e-15
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETS---KSDAKSQRVILPTGSLFFLRVV 57
++ + E T+ C + W ++ + S +L
Sbjct: 222 LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSA- 280
Query: 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
+ D GV+ C A N+ G+A + TL+V F F
Sbjct: 281 ---RVNDSGVFMCYANNTFGSA-NVTTTLEVVDKGFINIF 316
Score = 59.7 bits (144), Expect = 1e-11
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 7/104 (6%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
++ + C PE T K + K + + P + V K+
Sbjct: 125 YGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKD---LRFIPDPKAGIMIKSV---KR 177
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAY 105
C + +S L+V + ++Y
Sbjct: 178 AYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASY 221
Score = 59.3 bits (143), Expect = 1e-11
Identities = 9/96 (9%), Positives = 28/96 (29%), Gaps = 20/96 (20%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
++V + + L C G ++W + +
Sbjct: 46 LIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQ----------NEWITEKA---- 87
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
+ + G Y C ++ + ++ ++ +F +
Sbjct: 88 EATNTGKYTCTNKHGLSNSIY--VFVRDPAKLFLVD 121
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 68.1 bits (166), Expect = 4e-16
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 16/102 (15%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAK-----------SQRVILPTG 49
V L+C+A G P P I+W+ +G+ S +
Sbjct: 31 QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAAS 90
Query: 50 SLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
++ + E+D G Y C A N +V V
Sbjct: 91 TISIDTL----VEEDTGTYECRASNDPDRNHLT-RAPRVKWV 127
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 70.9 bits (173), Expect = 5e-16
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 20/88 (22%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+N T C+A G P P ++ KDG LP G +
Sbjct: 195 WTWPENSQQTPMCQAWGNPLPELKCLKDGTFP-------------LPIGESVTVT----- 236
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
G Y C AR++ G V+R T+ V
Sbjct: 237 -RDLEGTYLCRARSTQGE-VTREVTVNV 262
Score = 50.4 bits (120), Expect = 1e-08
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 19/89 (21%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
V++ VT+ C+A + + T+ L + ++ E
Sbjct: 110 VSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRA------------------QLLLKATPE 151
Query: 63 QDGGVYWCLARNSV-GTAVSRNATLQVAV 90
+G + C A V G + +N T ++ V
Sbjct: 152 DNGRSFSCSATLEVAGQLIHKNQTRELRV 180
Score = 36.6 bits (84), Expect = 7e-04
Identities = 7/87 (8%), Positives = 20/87 (22%), Gaps = 11/87 (12%)
Query: 7 EPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
T+ C +G E + + + + S+ +++
Sbjct: 19 TQGTVVCSLDGLFPVSEAQVHLALGDQ--RLNPTVTYGNDSFSAKASV-----SVTAEDE 71
Query: 64 DGGVYWCLARNSVGTAVSRNATLQVAV 90
C + T+ +
Sbjct: 72 GTQRLTCAVILGNQS-QETLQTVTIYS 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 71.4 bits (175), Expect = 5e-16
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
+ +T+ C + + + E V + S+ V + G LFF +V +
Sbjct: 258 AHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSN---GSVSVRNGDLFFKKV----QV 310
Query: 63 QDGGVYWCLARNSVGTAVSRNATLQV 88
+DGGVY C A + + L+V
Sbjct: 311 EDGGVYTCYAMGETFNE-TLSVELKV 335
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 67.3 bits (164), Expect = 1e-15
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETS-----KSDAKSQRVILPTGSLFFLRVVHG 59
+ + +G+P P++ W +G ++ + + + + G L + H
Sbjct: 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH- 72
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ G Y LA N G A S +
Sbjct: 73 ---VNNGNYTLLAANPFGQA-SASIMAAF 97
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 69.6 bits (170), Expect = 1e-15
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAK-SQRVILPTGSLFFLRVVHG 59
+V + E + C A K G+ ++ +L V
Sbjct: 196 LVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAV--- 252
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
QD G+Y C+A N VGT + QV
Sbjct: 253 -DFQDAGIYSCVASNDVGTR-TATMNFQV 279
Score = 64.6 bits (157), Expect = 9e-14
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 9/104 (8%)
Query: 1 MVVAKNEPVTLNCKAEGK-PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ V + + L C + ++ ++G K+ P +
Sbjct: 99 VTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT----VYFFSPWRGFIIRKA--- 151
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
K D Y C + + S L+V V + + S
Sbjct: 152 -KVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPS 194
Score = 64.6 bits (157), Expect = 1e-13
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 16/90 (17%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+VV E VTL C + G ++EW T ++ P +L
Sbjct: 14 LVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPES-------PGSTLTTRNA---- 58
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
++ G Y C S L V
Sbjct: 59 TFKNTGTYRCTELEDPMAG-STTIHLYVKD 87
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 66.3 bits (161), Expect = 3e-15
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 24/111 (21%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD---------------------- 38
+VV + L+ G P PT+ W K + +
Sbjct: 28 IVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLL 87
Query: 39 -AKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
RV + T + V G +++D GVY +N VG N T++V
Sbjct: 88 CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKV 137
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 69.5 bits (169), Expect = 4e-15
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 20/88 (22%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+N T C+A G P P ++ KDG LP G +
Sbjct: 380 WTWPENSQQTPMCQAWGNPLPELKCLKDGTFP-------------LPIGESVTVT----- 421
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
G Y C AR++ G +R T+ V
Sbjct: 422 -RDLEGTYLCRARSTQGEV-TREVTVNV 447
Score = 55.3 bits (132), Expect = 3e-10
Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 12/100 (12%)
Query: 2 VVAKNEPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
+ +TL C+ EG + T+ + + ++ V P + V
Sbjct: 97 WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE------PAVGEPAEVTTTVLVR- 149
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFF 98
++ G + C + A
Sbjct: 150 --RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL 187
Score = 52.2 bits (124), Expect = 4e-09
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 19/89 (21%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
V++ VT+ C+A + + T+ L ++ L+ E
Sbjct: 295 VSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ---------------LLLKAT---PE 336
Query: 63 QDGGVYWCLARNSV-GTAVSRNATLQVAV 90
+G + C A V G + +N T ++ V
Sbjct: 337 DNGRSFSCSATLEVAGQLIHKNQTRELRV 365
Score = 44.1 bits (103), Expect = 3e-06
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 14/87 (16%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
++ + V + C + ET K + ++ L V
Sbjct: 10 ILPRGGSVLVTCSTSCDQPMLLGI-------ETPLPK-KELLLPGNNRKVYELSNV---- 57
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
Q+ C + G + + L V
Sbjct: 58 -QEDSQPMCYSNCPDGQS-TAKTFLTV 82
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 64.6 bits (158), Expect = 4e-15
Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
V + V CK E + T + WY +E + K + I + L V
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLE---NSEKYE--ITYEDGVAILYVKDI 65
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
K D G Y C N G S A L V
Sbjct: 66 TKL-DDGTYRCKVVNDYGEDSSY-AELFV 92
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 67.4 bits (164), Expect = 5e-15
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 10/89 (11%)
Query: 1 MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
L C+ EG EW K + + + +
Sbjct: 131 GSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP----TPWLAEMTSPVISVKNA--- 183
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ G Y C +N VG+ L V
Sbjct: 184 -SSEYSGTYSCTVQNRVGSD-QCMLRLDV 210
Score = 54.3 bits (130), Expect = 4e-10
Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 31/116 (26%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPT----IEWYK---------------DGELVETSKSDAKS 41
+ AK E L CK PE IEW G+ + +
Sbjct: 10 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLK 69
Query: 42 QRVILPT-------GSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
RV + S+ + + D G Y C + + G A ++ L V V
Sbjct: 70 GRVHFTSNDVKSGDASINVTNL----QLSDIGTYQCKVKKAPGVA-NKKFLLTVLV 120
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 68.4 bits (166), Expect = 6e-15
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 19/101 (18%)
Query: 2 VVAKNEPVTLNC-----------KAEGKPEPTIEWYKDG---ELVETSKSDAKSQRVILP 47
V ++EP + C T+ WY +L E R+
Sbjct: 18 QVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE 77
Query: 48 TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
L+F D G Y C+ RN+ + L+V
Sbjct: 78 KDVLWFRPT----LLNDTGNYTCMLRNTTYCS-KVAFPLEV 113
Score = 58.7 bits (141), Expect = 2e-11
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 10/102 (9%)
Query: 1 MVVAKNEPVTLNCKA----EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGS-----L 51
E + + C + W DG+ + D I + +
Sbjct: 236 YEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRT 295
Query: 52 FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
L + E Y C AR++ G ++ A ++ V
Sbjct: 296 QILSIKKVTSEDLKRSYVCHARSAKGEV-AKAAKVKQKVPAP 336
Score = 57.2 bits (137), Expect = 6e-11
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
++ +PTI WY ++ VI +L FL + G Y
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQNFN------NVIPEGMNLSFLIA----LISNNGNYT 193
Query: 70 CLAR---NSVGTAVSRNATLQVAVVIFFI 95
C+ N ++R T++V
Sbjct: 194 CVVTYPENGRTFHLTRTLTVKVVGSPKNA 222
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 68.2 bits (166), Expect = 6e-15
Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 14/88 (15%)
Query: 2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
TL C A PEPT W + + L V
Sbjct: 228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPL--------PPFAVAQGAQLLIRPV---- 275
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ C N++G T+QV
Sbjct: 276 DKPINTTLICNVTNALGAR-QAELTVQV 302
Score = 66.3 bits (161), Expect = 3e-14
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 5/89 (5%)
Query: 2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ C + G+P I W+ D + + + SL+ L
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS--- 184
Query: 61 KEQDGGVYWCLARNSVGTA-VSRNATLQV 88
+ DG C + L V
Sbjct: 185 SQVDGKNVTCKVEHESFEKPQLLTVNLTV 213
Score = 58.2 bits (140), Expect = 2e-11
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 17/107 (15%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPT-----IEWYKDGELVETSKSDAKSQRVILPTGSLFFLR 55
+ + VTL C + + W + GE + + L F+
Sbjct: 10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69
Query: 56 VVHGK------------KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
G + +D G Y CL + S + L+V
Sbjct: 70 ARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 68.2 bits (167), Expect = 7e-15
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
+ +++ L C+ P +++W V + S R+ +L G+L F V
Sbjct: 362 LNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASR--HPRISVLNDGTLNFSHV--- 414
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
D GVY C+ N G + + +A L V
Sbjct: 415 -LLSDTGVYTCMVTNVAGNS-NASAYLNV 441
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 65.2 bits (159), Expect = 1e-14
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 15/88 (17%)
Query: 2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ E + L C + KP + ++++G+ + S D + +
Sbjct: 96 EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD----------PTFSIPQA---- 141
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
G Y C S+ T+ V
Sbjct: 142 NHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 64.5 bits (157), Expect = 2e-14
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 3 VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + + VTL C+ PE +I+W+ +G L+ T T + +
Sbjct: 16 VLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------------TQPSYRFKA----N 59
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
D G Y C + ++S L V +
Sbjct: 60 NNDSGEYTCQTGQT---SLSDPVHLTVLFEWLVLQ 91
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 65.3 bits (159), Expect = 2e-14
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 15/88 (17%)
Query: 2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
VV + +P+ L C + +YKDGE ++ + ++
Sbjct: 96 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN----------HNISITNA---- 141
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+D G Y+C + S + V
Sbjct: 142 TVEDSGTYYCTGKVWQLDYESEPLNITV 169
Score = 60.7 bits (147), Expect = 7e-13
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 20/95 (21%)
Query: 3 VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ K E VTL C E + +W+ +G L E + SL + K
Sbjct: 16 IFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------------NSSLNIVNA----K 59
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
+D G Y C + S L+V +
Sbjct: 60 FEDSGEYKCQHQQVNE---SEPVYLEVFSDWLLLQ 91
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 67.5 bits (165), Expect = 2e-14
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
+ V + L C+A ++ W V T + R+ +L G+L F V
Sbjct: 351 LNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAY--KVRIAVLSDGTLNFTNV--- 404
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
QD G+Y C+ NSVG + +ATL V
Sbjct: 405 -TVQDTGMYTCMVSNSVGNT-TASATLNV 431
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 66.5 bits (161), Expect = 2e-14
Identities = 15/108 (13%), Positives = 27/108 (25%), Gaps = 24/108 (22%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK-------------------SDAKSQR 43
V + +T+ C + WY E + S+ +
Sbjct: 148 VDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRA 207
Query: 44 VILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+L K D G WC G + + + + V
Sbjct: 208 SFSGARNLVIRAA----KITDAGRVWCELATGQGE-LDADRSSTILKV 250
Score = 42.6 bits (99), Expect = 6e-06
Identities = 20/119 (16%), Positives = 26/119 (21%), Gaps = 30/119 (25%)
Query: 3 VAKNEPVTLNCK---AEGKPEPTIEWYKDGE------------LVETSKSDAKSQRVILP 47
V V L C A P I W K +
Sbjct: 14 VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKE 73
Query: 48 TGSLFFLRVVHGK-----------KEQDGGVYWCLARNSVGT----AVSRNATLQVAVV 91
+ F R QDGG YWC +++ L+V
Sbjct: 74 SFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 132
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 67.1 bits (163), Expect = 2e-14
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V L CKA+ P T W + + V +LFF +
Sbjct: 243 WYLQRMDVKLTCKADANPPATEYHWTTLNGSL--------PKGVEAQNRTLFFKGPI--- 291
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
G Y C A N +GT S + +
Sbjct: 292 NYSLAGTYICEATNPIGTR-SGQVEVNI 318
Score = 62.8 bits (152), Expect = 6e-13
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Query: 6 NEPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
++ + C A GKP + W + + + + +E
Sbjct: 150 DKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPS----REAH 205
Query: 65 GGVYWCLARNSVGTAVSRNATLQV 88
C+ + + TL V
Sbjct: 206 QQSLACIVNYHMDR-FKESLTLNV 228
Score = 47.4 bits (112), Expect = 2e-07
Identities = 19/112 (16%), Positives = 25/112 (22%), Gaps = 18/112 (16%)
Query: 1 MVVAKNEPVTLNCKAEGKPEP----TIEWYKDGELV-----------ETSKSDAKSQRVI 45
M V L+C + W K S +RV
Sbjct: 24 MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVE 83
Query: 46 LPTGSL--FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
S +R+ + E D GVY C L V
Sbjct: 84 FLRPSFTDGTIRLSRLELE-DEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 67.1 bits (163), Expect = 2e-14
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETS-----KSDAKSQRVILPTGSLFFLR 55
+ + +G+P P++ W +G ++ + + + + G L +
Sbjct: 256 HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 315
Query: 56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ G Y LA N G A S +
Sbjct: 316 P----THVNNGNYTLLAANPFGQA-SASIMAAF 343
Score = 67.1 bits (163), Expect = 2e-14
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + V L C+ EG+ W + E T + LP+ L V
Sbjct: 170 VDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV-----MKSGGLPSLGLTLANVTS--- 221
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ + C A N VG A + + V+
Sbjct: 222 DLNRKNVTCWAENDVGRA-EVSVQVNVSF 249
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 66.6 bits (162), Expect = 2e-14
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ C + P+ W KD E S + + G+ +
Sbjct: 14 DDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDS-----PRLEVESKGNKTKM-TFKDLG 66
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
D G+Y C ++ G A S + + +S
Sbjct: 67 MDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALS 101
Score = 64.2 bits (156), Expect = 1e-13
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
V V L CK K E I WYKD + + + L +
Sbjct: 231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK-------HDFKDGICTLLITEF 283
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
K+ D G+Y + ++ G S L
Sbjct: 284 SKK-DAGIYEVILKDDRGKDKS-RLKLVD 310
Score = 57.7 bits (139), Expect = 4e-11
Identities = 10/92 (10%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
++ K + + + + + + + K + I + + + +
Sbjct: 119 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP---KYKMHIDRNTGIIEMFMEKLQD 175
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
E D G Y ++ T ++T+ + +F
Sbjct: 176 E-DEGTYTFQLQDGKATN---HSTVVLVGDVF 203
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 65.7 bits (160), Expect = 3e-14
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 16/88 (18%)
Query: 2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + EP+ L C A K + +Y++G+ + + +L L+
Sbjct: 93 VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN----------SNLTILKT---- 138
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
G Y C S ++ V
Sbjct: 139 NISHNGTYHCSGMGKHRYT-SAGISVTV 165
Score = 63.0 bits (153), Expect = 3e-13
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 20/96 (20%)
Query: 3 VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + E VTL+C+ P + +W+ +G +TS T S
Sbjct: 13 VFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------------TPSYRITSA----S 56
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
D G Y C S S L++ +
Sbjct: 57 VNDSGEYRCQRGLS---GRSDPIQLEIHRGWLLLQV 89
Score = 55.3 bits (133), Expect = 2e-10
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 19/94 (20%)
Query: 2 VVAKNEPVTLNCKAEGKPEP-----TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRV 56
+ + VTL+C+ + + +Y + + + + L
Sbjct: 181 PLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT----------SSEYQILTA 230
Query: 57 VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ +D G+YWC A G + R+ L++ V
Sbjct: 231 ----RREDSGLYWCEAATEDGNVLKRSPELELQV 260
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 64.7 bits (157), Expect = 4e-14
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + + VTL C + I+W + + ++ + + + S+ + +
Sbjct: 120 TTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLT-----ERMTLSQNNSILRIDPI--- 170
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
K +D G Y C N V S + L +
Sbjct: 171 KREDAGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 59.3 bits (143), Expect = 4e-12
Identities = 20/100 (20%), Positives = 25/100 (25%), Gaps = 18/100 (18%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVE-------------TSKSDAKSQRV-ILPT 48
VA++ V L WYK A S R I
Sbjct: 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 49 GSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
GSL F + +D GVY + V
Sbjct: 71 GSLLFQMI----TMKDMGVYTLDMTDENYRRTQATVRFHV 106
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 65.5 bits (159), Expect = 5e-14
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGE---LVETSKSDAKSQRVILPTGSLFFLRVVH 58
VV + E +TL C G EW + + +D L
Sbjct: 192 VVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSA-- 249
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ +D G Y C SV + + VV
Sbjct: 250 --ELEDSGTYTCNVTESVNDH-QDEKAINITVV 279
Score = 57.8 bits (139), Expect = 3e-11
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+V+ + L C + W + + + A+ + L +
Sbjct: 10 LVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGT---FSSVLTLTNL---- 58
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
D G Y+C +S G L + V
Sbjct: 59 TGLDTGEYFCTHNDSRGLETDERKRLYIFV 88
Score = 48.5 bits (115), Expect = 5e-08
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 16/90 (17%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ + +T+ C+ P+ + ++ V + F +
Sbjct: 106 FLTEITEITIPCRVTD-PQLVVTLHEKKGDVALP---------VPYDHQRGFSGI----- 150
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ Y C S + V
Sbjct: 151 -FEDRSYICKTTIGDREVDSDAYYVYRLQV 179
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 65.6 bits (159), Expect = 5e-14
Identities = 14/105 (13%), Positives = 22/105 (20%), Gaps = 19/105 (18%)
Query: 2 VVAKNEPVTLNCKAEG---------KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLF 52
+ A EP + C + + W K G+ + G L+
Sbjct: 40 MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR-------PLNRRVKNGDLW 92
Query: 53 FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
Y C G V + I
Sbjct: 93 IANYT---SNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPE 134
Score = 60.6 bits (146), Expect = 4e-12
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 11/95 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEP----TIEWYKDGELVETSKSDAKSQ---RVILPTGSLFF 53
+ V EP + C A I+W + S + +L+F
Sbjct: 238 INVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYF 297
Query: 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
V +E G Y C N + T+ +
Sbjct: 298 ENV---TEEYIGNTYTCRGHNYYFDK-TLTTTVVL 328
Score = 59.5 bits (143), Expect = 9e-12
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 11/93 (11%)
Query: 1 MVVAKNEPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ + L C K I WYK+ + + + +L
Sbjct: 138 LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID-----GTKYSQSGQNLIIHNP--- 189
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVI 92
+ +D G Y C + + + ++
Sbjct: 190 -ELEDSGRYDCYVHYDDVR-IKNDIVVSRCKIL 220
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 65.4 bits (159), Expect = 5e-14
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTI-EWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+V + E + C A + + + +L +V
Sbjct: 196 LVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQV--- 252
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
Q G Y C+A N G S + +V
Sbjct: 253 -DFQHAGNYSCVASNVQGKH-STSMFFRV 279
Score = 59.2 bits (143), Expect = 8e-12
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
+VV +++ L C E + + G + + P R
Sbjct: 99 VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRH-----TNYSFSPWHGFTIHRA-- 151
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVI 92
K Y C A +S + L+V VI
Sbjct: 152 --KFIQSQDYQCSALMGGRKVMSISIRLKVQKVI 183
Score = 58.8 bits (142), Expect = 1e-11
Identities = 21/90 (23%), Positives = 25/90 (27%), Gaps = 16/90 (17%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+VV VTL C G ++EW T SD S L
Sbjct: 14 LVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSS-------SILSTNNA---- 58
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
Q+ G Y C S L V
Sbjct: 59 TFQNTGTYRCTEPGDPLGG-SAAIHLYVKD 87
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 63.1 bits (153), Expect = 1e-13
Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ + + +TL ++ P+++ + I +L ++ +
Sbjct: 108 HLLQGQSLTLTLESPPGSSPSVQCRSPR------------GKNIQGGKTLSVSQL----E 151
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
QD G + C + V + V
Sbjct: 152 LQDSGTWTCTVLQNQKK-VEFKIDIVV 177
Score = 51.5 bits (123), Expect = 3e-09
Identities = 13/99 (13%), Positives = 22/99 (22%), Gaps = 11/99 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
++ K + V L C A K W ++ + + R
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 61 -----------KEQDGGVYWCLARNSVGTAVSRNATLQV 88
K +D Y C + L
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 103
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 62.2 bits (151), Expect = 2e-13
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 15/88 (17%)
Query: 2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + +P+ L C + + + + ++G+ + + +
Sbjct: 99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHN----------SDFHIPKA---- 144
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+D G Y+C S + +
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 58.7 bits (142), Expect = 5e-12
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 20/95 (21%)
Query: 3 VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + + VTL C+ PE + +W+ + L+ + S F
Sbjct: 19 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------------ASSYFIDAA----T 62
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
D G Y C S S L+V + +
Sbjct: 63 VNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQ 94
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 62.6 bits (152), Expect = 3e-13
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 12/90 (13%)
Query: 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETS-KSDAKSQRVILPTGSLFFLRVVH 58
V V L CK K E I WYKD + K D K L ++
Sbjct: 126 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL---------LIT 176
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
++D G+Y + ++ G SR L
Sbjct: 177 EFSKKDAGIYEVILKDDRGKDKSR-LKLVD 205
Score = 55.7 bits (134), Expect = 1e-10
Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
++ K + + + + + + + K + I + + + +
Sbjct: 14 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEI---FEGPKYKMHIDRNTGIIEMFMEKLQD 70
Query: 62 EQDGGVYWCLARNSVGTAVS 81
E D G Y ++ T S
Sbjct: 71 E-DEGTYTFQLQDGKATNHS 89
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 62.2 bits (151), Expect = 4e-13
Identities = 10/88 (11%), Positives = 26/88 (29%), Gaps = 15/88 (17%)
Query: 2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + +P+ L C + + + ++G+ + + +
Sbjct: 99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH----------NSDFYIPKA---- 144
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+D G Y+C S + +
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVQITI 172
Score = 57.2 bits (138), Expect = 2e-11
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 20/87 (22%)
Query: 3 VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + + VTL C+ PE + +W+ + L+ + S F
Sbjct: 19 VLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------------ASSYFIDAA----T 62
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
D G Y C + S +S L+V
Sbjct: 63 VDDSGEYRCQTQLST---LSDPVQLEV 86
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 60.0 bits (145), Expect = 6e-13
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 1 MVVAKNEPVTLNCKAEGKP---EPTIEWYKDGELVETSKSDAKSQ-------RVILPTGS 50
V E +T K + + +PTI+W+K + SK+ Q + T
Sbjct: 17 GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 76
Query: 51 LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ ++ K+ G Y C S + L+V
Sbjct: 77 MQIIKA----KDNFAGNYRCEVTYKDKF-DSCSFDLEV 109
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 61.4 bits (148), Expect = 8e-13
Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 8/89 (8%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V V L C P I W + + + D + + L +
Sbjct: 124 VSISGTTVILTCPQY--PGSEILWQHNDKNI---GGDEDDKNIGSDEDHLSLKEF---SE 175
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ G Y C R S + L+ V
Sbjct: 176 LEQSGYYVCYPRGSKPEDANFYLYLRARV 204
Score = 53.4 bits (127), Expect = 7e-10
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 16/84 (19%)
Query: 6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG 65
+ V L C A I W+KDG+++ D + GS +
Sbjct: 18 DGSVLLTCDA---EAKNITWFKDGKMIGFLTED----KKKWNLGSN---------AKDPR 61
Query: 66 GVYWCLARNSVGTAVSRNATLQVA 89
G+Y C + + + A
Sbjct: 62 GMYQCKGSQNKSKPLQVYYRMGSA 85
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 61.7 bits (149), Expect = 1e-12
Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ + + +TL ++ P+++ + I +L ++ +
Sbjct: 107 HLLQGQSLTLTLESPPGSSPSVQCRSPRG------------KNIQGGKTLSVSQL----E 150
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
QD G + C + V + V
Sbjct: 151 LQDSGTWTCTVLQNQKK-VEFKIDIVV 176
Score = 49.4 bits (117), Expect = 3e-08
Identities = 14/99 (14%), Positives = 22/99 (22%), Gaps = 12/99 (12%)
Query: 2 VVAK-NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V+ K + V L C A K W ++ + + R
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 61 -----------KEQDGGVYWCLARNSVGTAVSRNATLQV 88
K +D Y C + L
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 102
Score = 41.3 bits (96), Expect = 2e-05
Identities = 14/94 (14%), Positives = 22/94 (23%), Gaps = 7/94 (7%)
Query: 2 VVAKNEPVTLNCKAEGKPEP----TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV 57
V L +AE T + V+ D K Q L + +
Sbjct: 204 VEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL 263
Query: 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ G G + + L V
Sbjct: 264 P--QYAGSGNLTLALEAKTGK-LHQEVNLVVMRA 294
Score = 40.2 bits (93), Expect = 5e-05
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 19/82 (23%)
Query: 7 EPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
L C+ G P + + + + SK + V +
Sbjct: 297 LQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR-------------EKAVWV----LNPE 339
Query: 65 GGVYWCLARNSVGTAVSRNATL 86
G++ CL +S + N +
Sbjct: 340 AGMWQCLLSDSGQVLLESNIKV 361
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 58.5 bits (141), Expect = 2e-12
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 15/98 (15%)
Query: 1 MVVAKNEPVTLNCKAEGKP---EPTIEWYKDGELVETSKS-------DAKSQRVILPTGS 50
V +T + + G P ++W+K + +SK D+ + +
Sbjct: 14 GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73
Query: 51 LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
L + G Y C N L V
Sbjct: 74 LHITDA----QPAFTGSYRCEVSTKDKFD-CSNFNLTV 106
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 58.6 bits (141), Expect = 2e-12
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLR----VVH 58
++ E + LNC A + I++ + + ++ + +GS +
Sbjct: 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
G D G+Y C A + + T + ++V
Sbjct: 80 GVTRSDQGLYTCAASSGLMTK-KNSTFVRV 108
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 57.3 bits (139), Expect = 3e-12
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
VA E V L C+ P + W KD + + KSQ+ ++ G++ L +
Sbjct: 18 QWVAPGEDVELRCELSRAGTP-VHWLKDRKAIR------KSQKYDVVCEGTMAMLVIRGA 70
Query: 60 KKEQDGGVYWCLARNSVGTA 79
+ D G Y C S TA
Sbjct: 71 SLK-DAGEYTCEVEASKSTA 89
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 59.7 bits (144), Expect = 6e-12
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETS-----KSDAKSQRVILPTGSLFFL 54
++ K + T+ C + W K + S + +L
Sbjct: 198 HLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTIS 257
Query: 55 RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ D GV+ C A N+ G+A + TL+V
Sbjct: 258 SA----RVDDSGVFMCYANNTFGSA-NVTTTLKV 286
Score = 59.0 bits (142), Expect = 1e-11
Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 9/108 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ ++ + C + DG+ + T + V P + V
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTF-----VPNPKAGITIKNVK-- 153
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLY 107
+ C A+ S TL+V I I +++L
Sbjct: 154 -RAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLL 200
Score = 47.0 bits (111), Expect = 2e-07
Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 17/81 (20%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
++V + ++L C + W E ++ +
Sbjct: 22 LIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENK---------KNEWIQEKA---- 64
Query: 61 KEQDGGVYWCLARNSVGTAVS 81
+ G Y C N + +++
Sbjct: 65 EATRTGTYTCSNSNGLTSSIY 85
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 57.5 bits (138), Expect = 2e-11
Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 10/96 (10%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ + V+L C G P W + K + T S + V
Sbjct: 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNE------GTTSTLTMNPV--- 61
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
+ Y C A + +++
Sbjct: 62 SFGNEHSYLCTATCESRKL-EKGIQVEIYSFPKDPE 96
Score = 57.5 bits (138), Expect = 2e-11
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 3 VAKNEPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ +P+T+ C I+ K L+++ + + R L T SL
Sbjct: 103 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV- 161
Query: 60 KKEQDGGVYWCLARNSVG------TAVSRNATLQVAV 90
E G V C A+ + T LQV +
Sbjct: 162 -IEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI 197
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 57.7 bits (139), Expect = 2e-11
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+V L C+AEG P+ + W V + K+ + + LF +
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSK---REEKLFNVTSTLRI 182
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+++C R + A L +
Sbjct: 183 NTTTNEIFYCTFRRLDPE-ENHTAELVI 209
Score = 37.3 bits (86), Expect = 5e-04
Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 27/116 (23%)
Query: 2 VVAKNEPVTLNCKAEGKP-----EPTIEW---------YKDGELVETSKSDAKSQRVILP 47
VV +T+ CK + + W + GE + + QR L
Sbjct: 12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71
Query: 48 -------TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
+L V K QD GVY C+ S G A + T++V I+
Sbjct: 72 KDQLSLGNAALQITDV----KLQDAGVYRCMI--SYGGADYKRITVKVNAPYNKIN 121
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 55.5 bits (134), Expect = 2e-11
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
+ V E C+ + T +WYK+G V SK R+ I G L +
Sbjct: 18 LTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSK------RITISHVGRFHKLVIDDV 70
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ E D G Y + + +A L +
Sbjct: 71 RPE-DEGDYTFVPDGYALSL---SAKLNFLEI 98
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 55.1 bits (133), Expect = 4e-11
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 10/88 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V + T C+ + W+ D + + + + G L +
Sbjct: 23 VDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN----ELNEIDAQPGGYHVLTLRQLA 78
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ D G + A G + A L+V
Sbjct: 79 LK-DSGTIYFEA----GDQRAS-AALRV 100
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 54.3 bits (131), Expect = 5e-11
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ TL+C+ + + + WYKDG+ + +S + + G L V
Sbjct: 21 VQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSS-----KVRVEAVGCTRRLVVQQAG 74
Query: 61 KEQDGGVYWCLARNSVGTA 79
+ + G Y C A +
Sbjct: 75 QA-EAGEYSCEAGGQQLSF 92
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 54.3 bits (131), Expect = 6e-11
Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 9/81 (11%)
Query: 1 MVVAKNEPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVH 58
M V + E + C + W G+ V +S R G + L V
Sbjct: 18 MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS------RFQATRQGRKYILVVRE 71
Query: 59 GKKEQDGGVYWCLARNSVGTA 79
D G R A
Sbjct: 72 AAPS-DAGEVVFSVRGLTSKA 91
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 57.3 bits (137), Expect = 7e-11
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Query: 8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGG 66
P CK + +W G S+ + S+ + S ++ D G
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG 522
Query: 67 VYWCLARNSVGTAVSRNATLQV 88
YWC + + + V
Sbjct: 523 WYWCGVKQGHFYGETAAVYVAV 544
Score = 55.8 bits (133), Expect = 2e-10
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 1 MVVAKNEPVTLNC--KAEGKPEPTIEWYKDGELVET------SKSDAKSQRV---ILPTG 49
V VT+NC K E + + + G + + R+ I TG
Sbjct: 122 YTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTG 181
Query: 50 SLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
L F V++ + D G Y C A + + +NA LQV
Sbjct: 182 QLLFSVVINQLRLSDAGQYLCQAGDDSNSN-KKNADLQV 219
Score = 50.4 bits (119), Expect = 2e-08
Identities = 13/114 (11%), Positives = 28/114 (24%), Gaps = 15/114 (13%)
Query: 1 MVVAKNEPVTLNCKAE---GKPEPTIEWYKDGE------LVETSKS--DAKSQRVIL--- 46
+ + V++ C W + G L+ + + R L
Sbjct: 10 VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF 69
Query: 47 PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRF 100
P F + + ++ D G Y C + + +
Sbjct: 70 PENGTFVVNIAQLSQD-DSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVY 122
Score = 48.1 bits (113), Expect = 1e-07
Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 9/96 (9%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL---PTGSLFFLRVVHGKKEQ 63
C+ + G+ + R++L F + + +KE
Sbjct: 247 NVAKFLCRQSSGENCDVVVNTLGKRAPAFEG-----RILLNPQDKDGSFSVVITGLRKE- 300
Query: 64 DGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFR 99
D G Y C A + V + R
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR 336
Score = 47.7 bits (112), Expect = 1e-07
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 13/94 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGE---------LVETSKS--DAKSQRVIL--P 47
+ V + C K +I+++ E LV++ R+ L
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400
Query: 48 TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81
G+ F +++ +D G YWCL +
Sbjct: 401 PGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTT 434
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 53.9 bits (130), Expect = 8e-11
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ +E V L C+ + + WYKDG+ VE S+ V+ G L ++
Sbjct: 20 LTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESE-----LLVVKMDGRKHRL-ILPEA 72
Query: 61 KEQDGGVYWCLARNSVGTA 79
K QD G + C
Sbjct: 73 KVQDSGEFECRTEGVSAFF 91
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 55.3 bits (133), Expect = 9e-11
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 18/88 (20%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ TL C+ +P + Y+DG+ ++ SQRVI +
Sbjct: 110 KISWTCINTTLTCEVMNGTDPELNLYQDGKHLKL------SQRVITHKWTT--------- 154
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ C A N V S +
Sbjct: 155 --SLSAKFKCTAGNKVSKE-SSVEPVSC 179
Score = 49.9 bits (119), Expect = 8e-09
Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 14/99 (14%)
Query: 2 VVAKNEPVTLNCK--AEGKPEPTIEWYKDGELVETSKSDAKSQRV-------ILPTGSLF 52
A + + L+ I+W K + + ++ + + + G+L
Sbjct: 10 WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLK 69
Query: 53 FLRVVHGKKEQDGGVYWCLARNSVGTAV-SRNATLQVAV 90
+ K D +Y ++ G V + L++
Sbjct: 70 IKHL----KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQE 104
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 55.6 bits (133), Expect = 1e-10
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEW--------YKDGELVETSKSDAKSQRVILPTGSLFFL 54
++ E + LNC A + I++ ++ +LV + +L
Sbjct: 117 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 176
Query: 55 RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
V D G+Y C A + + T + ++V
Sbjct: 177 GV----TRSDQGLYTCAASSGLMT-KKNSTFVRV 205
Score = 41.3 bits (96), Expect = 2e-05
Identities = 11/94 (11%), Positives = 25/94 (26%), Gaps = 7/94 (7%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ KN+ V + C + R+ + F +
Sbjct: 19 ITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPD---GNRISWDSKKGF---TIPSY 71
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
G+ +C A+ + + S + V +
Sbjct: 72 MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 105
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 56.4 bits (136), Expect = 1e-10
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDG-ELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + + C+ P + W+KD EL ++ K + G+ + L + K
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY------NGNDYGLTINRVKG 547
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVA 89
+ D G Y A+NS GT L V
Sbjct: 548 D-DKGEYTVRAKNSYGTK-EEIVFLNVT 573
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 52.0 bits (125), Expect = 3e-10
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
+ VA P + E + W + G + S + + G+ L V
Sbjct: 18 VEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASN------KYGLATEGTRHTLTVREV 70
Query: 60 KKEQDGGVYWCLARNSVGTA 79
D G Y +A +S
Sbjct: 71 GPA-DQGSYAVIAGSSKVKF 89
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 52.5 bits (126), Expect = 3e-10
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
+ + E V L C+ +P + W KDGE V S + + ++ L V+
Sbjct: 23 VAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESP------ALLLQKEDTVRRL-VLPA 74
Query: 60 KKEQDGGVYWCLARNSVGTA 79
+ +D G Y C + +
Sbjct: 75 VQLEDSGEYLCEIDDESASF 94
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 52.3 bits (126), Expect = 3e-10
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
V + + L C+ W K+G V+ S R+ ++ G + L + +
Sbjct: 17 QTVNLGKEICLKCEISENIPGK--WTKNGLPVQESD------RLKVVQKGRIHKLVIANA 68
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
E D G Y T A + V
Sbjct: 69 LTE-DEGDYVFAPDAYNVTL---PAKVHV 93
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 52.4 bits (126), Expect = 3e-10
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
V+K + L + + ++W K+G+ ++ S S+ + G+ L +
Sbjct: 28 VSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMS----GSKYIFESIGAKRTLTISQCSLA 82
Query: 63 QDGGVYWCLARNSVGTA 79
D Y C+ +
Sbjct: 83 -DDAAYQCVVGGEKCST 98
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 51.5 bits (124), Expect = 4e-10
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
+ V E + +P+ +W G+ + S I+ G L ++H
Sbjct: 15 VEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASP------DCEIIEDGKKHIL-ILHN 66
Query: 60 KKEQDGGVYWCLARNSVGTA 79
+ G A N+ A
Sbjct: 67 CQLGMTGEVSFQAANTKSAA 86
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 51.6 bits (124), Expect = 6e-10
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
E V L C+ + + ++W+K+GE + + I G L ++ G
Sbjct: 17 TTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKS---RYRIRVEGKKHIL-IIEGA 71
Query: 61 KEQDGGVYWCLARNSVGTA 79
+ D Y + +A
Sbjct: 72 TKADAAEYSVMTTGGQSSA 90
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 51.6 bits (124), Expect = 6e-10
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V + V + + + + W K+G + S R G L +
Sbjct: 18 QQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYR-FKKDGKRHIL-IFSDV 74
Query: 61 KEQDGGVYWCLARNSVGTA 79
++D G Y + A
Sbjct: 75 VQEDRGRYQVITNGGQCEA 93
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 53.7 bits (128), Expect = 8e-10
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 26/112 (23%)
Query: 1 MVVAKNEPVTLNCK---AEGKPEPTIEWYKDG------ELVETSKSDAK----------- 40
+ V E V + C E K ++W E V S+
Sbjct: 15 LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSH 74
Query: 41 -SQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
GSL V ++ D G+Y C R + V +++ V+
Sbjct: 75 LVGDTFHNDGSLLLQDV----QKADEGIYTCEIRLKNESMVM-KKPVELWVL 121
Score = 44.9 bits (105), Expect = 1e-06
Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 30/113 (26%)
Query: 1 MVVAKNEPVTLNCKAEGKPEP---TIEWYKD----------------GELVETSKSDAKS 41
+ V + + C + E + W +
Sbjct: 128 LRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFR 187
Query: 42 QRVIL------PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
RV L GS+ V KE D G+Y C + + L V
Sbjct: 188 NRVDLTGDISRNDGSIKLQTV----KESDQGIYTCSIYVGKLES-RKTIVLHV 235
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 52.7 bits (126), Expect = 1e-09
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV---H 58
V V+L C + + +E + + + +S+R L L + +
Sbjct: 13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
+ +D G Y CL + T++V I
Sbjct: 73 SVQVRDSGQYRCLVICGAAWD-YKYLTVKVKASYMRID 109
Score = 51.2 bits (122), Expect = 3e-09
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 13/99 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ V V L C+A G P + W + + + LR+
Sbjct: 113 LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSV-----LRL--- 164
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFF 98
K Q + C+ N+ + + +
Sbjct: 165 -KPQPSRNFSCMFWNAHM---KELTSAIIDPLSRMEPKV 199
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 50.5 bits (121), Expect = 1e-09
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
V K V + P+ ++WYK+G+ + S + + G L + + +
Sbjct: 20 VDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPST-----KYIFEHKGCQRILFINNCQMT 73
Query: 63 QDGGVYWCLARNSVGTA 79
D Y+ A + +
Sbjct: 74 -DDSEYYVTAGDEKCST 89
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 50.4 bits (121), Expect = 2e-09
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V + CK P T+ W K + S + G L +
Sbjct: 18 LQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASG-----KHQPSQEGLTLRL-TISAL 70
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
++ D Y C G A SR A L V
Sbjct: 71 EKADSDTYTCDI----GQAQSR-AQLLV 93
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 50.4 bits (121), Expect = 2e-09
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
+ L C+ +EW+K E + R + G+ L++
Sbjct: 29 EEATEGATAVLRCELSKMAP--VEWWKGHETLRDGD------RHSLRQDGARCELQIRGL 80
Query: 60 KKEQDGGVYWCLARNSVGTA 79
E D G Y C+ +A
Sbjct: 81 VAE-DAGEYLCMCGKERTSA 99
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 52.9 bits (126), Expect = 2e-09
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 20/91 (21%)
Query: 2 VVAKNEPVTLNCKAEG-KPEP---TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV 57
+ TL G +P P T W KD + E + T +L
Sbjct: 13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN------------TATLTVADA- 59
Query: 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
++ G Y +++ + +
Sbjct: 60 ---TSENAGSYKVTVQDTDTMTSVESEVFLM 87
Score = 44.4 bits (104), Expect = 2e-06
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 23/104 (22%)
Query: 3 VAKNEPVTLNCK--------AEGKPEPTI--EWY--KDGELVETSKSDAKSQRV----IL 46
VA ++LN + G P TI WY ++G+L T + + I
Sbjct: 196 VALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSIT 255
Query: 47 PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
P G LF D +WC+A+ + T++VA
Sbjct: 256 PDGHLFKESA----TYDDTAKFWCVAKLYQQIE---DETVEVAA 292
Score = 42.9 bits (100), Expect = 5e-06
Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 25/100 (25%)
Query: 2 VVAKNEPVTLNCK---AEGKPEP-----TIEWYKDGELVETSKSDAKSQRVILPTGSLFF 53
V+ V L+ + GK W K ++++T T +
Sbjct: 103 YVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-------------TQDITI 149
Query: 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
GVY + + +T + +
Sbjct: 150 QEF----TADKNGVYTVKVWGESEDSAASASTKIMLATMN 185
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 50.4 bits (121), Expect = 2e-09
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
+ V + TL C P ++W ++ + + G++ L V +
Sbjct: 18 LEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGD------KYSLRQEGAMLELVVRNL 70
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ + D G Y C G + ATL V
Sbjct: 71 RPQ-DSGRYSCSF----GDQTTS-ATLTV 93
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 50.1 bits (120), Expect = 2e-09
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
++ TL C+ +EW K E + R + G+ L++
Sbjct: 18 KEASEGATATLQCELS--KVAPVEWKKGPETLRDGG------RYSLKQDGTRCELQIHDL 69
Query: 60 KKEQDGGVYWCLARNSVGTA 79
D G Y C+ +A
Sbjct: 70 SVA-DAGEYSCMCGQERTSA 88
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 50.0 bits (119), Expect = 8e-09
Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 12/95 (12%)
Query: 1 MVVAKNEPVTLNCK--AEGKPEPTIEWYKDGELVETSKSDAKSQRV-----ILPTGSLFF 53
+ A + LN + W + LV K K IL G L
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ D G Y ++ GT + N L +
Sbjct: 66 KNL----TRDDSGTYNVTVYSTNGTRIL-NKALDL 95
Score = 47.6 bits (113), Expect = 7e-08
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 17/81 (20%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
M+ + TL C+ + ++ Y+ E + + + + + +
Sbjct: 105 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------------KTMSYQ 147
Query: 61 KEQDGGVYWCLARNSVGTAVS 81
+ C A N V
Sbjct: 148 WTNLRAPFKCKAVNRVSQESE 168
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 50.9 bits (121), Expect = 9e-09
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ V + T C A G+ + G + + K +V + V
Sbjct: 174 VEVNAGQFATFQCSAIGRTVAGDRLWLQGI--DVRDAPLKEIKVTSSRRFIASFNV-VNT 230
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
++D G Y C+ R G +S A L V
Sbjct: 231 TKRDAGKYRCMIRTEGGVGISNYAELVVKEP 261
Score = 30.5 bits (68), Expect = 0.14
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 5/66 (7%)
Query: 7 EPVTLN--CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
P LN K P W G + +++ +++ I F+ +
Sbjct: 90 PPGLLNVYVKVNNGPLGNPIWNISG---DPTRTWNRAELAISTFWPNFYQVIFEVITSGH 146
Query: 65 GGVYWC 70
G
Sbjct: 147 QGYLAI 152
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 48.2 bits (114), Expect = 7e-08
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ + C + G +P I W+ D + + + SL+ L
Sbjct: 126 VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVP--- 182
Query: 60 KKEQDGGVYWCLARN-SVGTAVSRNATLQV 88
+ DG C + S +L V
Sbjct: 183 SSQVDGKQVTCKVEHESFEKPQLLTVSLTV 212
Score = 34.7 bits (79), Expect = 0.004
Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 17/107 (15%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPT-----IEWYKDGE----LVETSKSDAKSQRVILPTGSL 51
+ + VTL C + + W + GE V
Sbjct: 9 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 68
Query: 52 FFLRVVHGK--------KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
L + +D G Y CL + S + L+V
Sbjct: 69 ARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA 115
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 48.3 bits (114), Expect = 8e-08
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 10/81 (12%)
Query: 1 MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ + VTL C E + T+ W + S R L ++
Sbjct: 16 LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS-----RWAGMGRRL----LLRS 66
Query: 60 KKEQDGGVYWCLARNSVGTAV 80
+ D G Y C V
Sbjct: 67 VQLHDSGNYSCYRAGRPAGTV 87
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 47.8 bits (113), Expect = 9e-08
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ K+ + L C++ G P+P I+W + + L+ +
Sbjct: 128 VKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVA----DGVGLYAVAASVI 183
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
+ G C R+S+ + A++ +A F
Sbjct: 184 MRGSSGEGVSCTIRSSLLGL-EKTASISIADPFF 216
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 47.1 bits (111), Expect = 1e-07
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELV----ETSKSDAKSQRVILPTGSLFFLR- 55
V+ + C + G P P I WY++G+ + E + + R + L L
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTS 189
Query: 56 --VVHGKKEQDGGVYWCLARNSV-----GTAVSRNATLQV 88
+ +K+ + C A S+ G S L +
Sbjct: 190 TLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229
Score = 38.6 bits (89), Expect = 2e-04
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 17/104 (16%)
Query: 3 VAKNEPVTLNCKAEGKPEPT-IEWYKD---------------GELVETSKSDAKSQRVIL 46
V + + V L+C G + +EW+ G ++ + D + +
Sbjct: 12 VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPY 71
Query: 47 PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
S L + + D Y C+ R A L V
Sbjct: 72 QLDSQGRLV-LAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA 114
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 46.8 bits (110), Expect = 2e-07
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 17/89 (19%)
Query: 6 NEPVTLNC----KAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
P L+C E P T W + ++ S+ + P
Sbjct: 138 GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPR------------P 185
Query: 62 EQDGGVYWCLARNSVGTA-VSRNATLQVA 89
E G C + R L V+
Sbjct: 186 EDHGTNLTCQMKRQGAQVTTERTVQLNVS 214
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 44.8 bits (105), Expect = 3e-07
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V L C P I W + + + D + + L + + + G Y
Sbjct: 24 VILTCPQY--PGSEILWQHNDKNI---GGDEDDKNIGSDEDHLS---LKEFSELEQSGYY 75
Query: 69 WCLARNSVGTAVSRNATLQVAV 90
C R S + L+ V
Sbjct: 76 VCYPRGSKPEDANFYLYLRARV 97
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 45.2 bits (107), Expect = 6e-07
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 10/74 (13%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V+ E ++L C + P K+GEL + + F L V
Sbjct: 116 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHP-------ANFSLGPV---D 165
Query: 62 EQDGGVYWCLARNS 75
G+Y C +
Sbjct: 166 LNVSGIYRCYGWYN 179
Score = 42.6 bits (100), Expect = 5e-06
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 9/98 (9%)
Query: 2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
V+ + V + C+A + K+ E + + + +
Sbjct: 19 VIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGR---RLKFWNETDPEFVIDHM---- 71
Query: 61 KEQDGGVYWCLARNSVGTAV-SRNATLQVAVVIFFISF 97
G Y C R S L V +
Sbjct: 72 DANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFL 109
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 44.5 bits (105), Expect = 9e-07
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 17/81 (20%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
M+ + TL C+ + ++ Y+ E + + Q+ +
Sbjct: 110 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-----RQKTMSYQ------------ 152
Query: 61 KEQDGGVYWCLARNSVGTAVS 81
+ C A N V
Sbjct: 153 WTNLRAPFKCKAVNRVSQESE 173
Score = 31.4 bits (71), Expect = 0.043
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 18/100 (18%)
Query: 1 MVVAKNEPVTLNCKAE------------GKPEPTIEWYKDGELVETSKSDAKSQRVILPT 48
+ VTL + +E++ +G+ +
Sbjct: 9 VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN 68
Query: 49 GSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
G+L V ++D G Y+ + T T++V
Sbjct: 69 GALRIYNV----SKEDRGDYYMRMLHE--TEDQWKITMEV 102
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 44.6 bits (105), Expect = 1e-06
Identities = 12/98 (12%), Positives = 21/98 (21%), Gaps = 15/98 (15%)
Query: 1 MVVAKNEPVTLNC-------KAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFF 53
VV + T C I W + + + +I T S
Sbjct: 13 PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQY-----TIINRTASS-- 65
Query: 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
+ L + V T+ +
Sbjct: 66 VTFTDIASLNIQLTCNILTFGQLEQNVYG-ITIISGLP 102
Score = 29.6 bits (66), Expect = 0.22
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 7 EPVTLNCKAEGKPEPTIEWY--KDGEL-----VETSKSDAKSQRVILPTGSLFFLRVVHG 59
+P L+C + EW ++ L +++ + K + V +
Sbjct: 105 KPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS 164
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
W A N++G S +
Sbjct: 165 TVYFVNIEVWVEAENALGKVTSDHINFDPVYK 196
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 44.1 bits (104), Expect = 2e-06
Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 15/91 (16%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
VV + VTL C YK+ + Q F + V
Sbjct: 34 VVPRGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGRIFQ-------ESFNMSPV---T 82
Query: 62 EQDGGVYWCLARNS----VGTAVSRNATLQV 88
G Y C + +A S + V
Sbjct: 83 TAHAGNYTCRGSHPHSPTGWSAPSNPVVIMV 113
Score = 42.6 bits (100), Expect = 8e-06
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+V E V L C ++ E +K+G + S+ + + + + F + +
Sbjct: 129 LVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGV--SKANFSIGPM---M 182
Query: 62 EQDGGVYWCLARNS----VGTAVSRNATLQVAVVIFFIS 96
G Y C + +A S + V S
Sbjct: 183 LALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPS 221
Score = 34.1 bits (78), Expect = 0.007
Identities = 12/74 (16%), Positives = 19/74 (25%), Gaps = 8/74 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V E VTL+C + + ++G E + +
Sbjct: 229 KVQAGESVTLSCSSRSSYD-MYHLSREGGAHERRLPAVRKV----NRTFQADFPLG---P 280
Query: 62 EQDGGVYWCLARNS 75
GG Y C
Sbjct: 281 ATHGGTYRCFGSFR 294
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 43.8 bits (103), Expect = 2e-06
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+V E V L C ++ +++G+ +T + + + + F + +
Sbjct: 17 LVKSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGV--SKANFSIGPM---M 70
Query: 62 EQDGGVYWCLARNS----VGTAVSRNATLQVAVVIFFIS 96
+ G Y C + +A S + + + S
Sbjct: 71 QDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPS 109
Score = 36.9 bits (85), Expect = 7e-04
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V E VTL+C + ++GE E S +V + F L
Sbjct: 117 TVLAGESVTLSCSSRS-SYDMYHLSREGEAHERRFSA--GPKVNGTFQADFPLGPA---- 169
Query: 62 EQDGGVYWCLARNS 75
GG Y C
Sbjct: 170 -THGGTYRCFGSFR 182
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 41.9 bits (98), Expect = 5e-06
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 13/97 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD--AKSQRVIL-----PTGSLFF 53
+ V + + +TL C + +++W K+ + L S+
Sbjct: 11 ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITV 70
Query: 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
V QD GVY CL + + ++ + V
Sbjct: 71 PNV----TLQDEGVYKCLHYSD--SVSTKEVKVIVLA 101
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 43.0 bits (101), Expect = 5e-06
Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 13/89 (14%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V E VT C+ + K+G + K Q + F L V
Sbjct: 112 EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQ-------AEFPLGPV---T 160
Query: 62 EQDGGVYWCLA--RNSVGTAVSRNATLQV 88
G Y C N + S L V
Sbjct: 161 TAHRGTYRCFGSYNNHAWSFPSEPVKLLV 189
Score = 42.6 bits (100), Expect = 7e-06
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+V K + VT+ C+ + + +G L + + + +
Sbjct: 17 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERIN---KVKFYIPDM----N 68
Query: 62 EQDGGVYWCLARNSVG-TAVSRNATLQV 88
+ G Y C+ R + S L V
Sbjct: 69 SRMAGQYSCIYRVGELWSEPSNLLDLVV 96
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 41.7 bits (98), Expect = 9e-06
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+V K + VT+ C+ + + +G L + + + +
Sbjct: 14 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERI---NKVKFYIPDM----N 65
Query: 62 EQDGGVYWCLARNSVG 77
+ G Y C+ R
Sbjct: 66 SRMAGQYSCIYRVGEL 81
Score = 39.4 bits (92), Expect = 6e-05
Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 13/89 (14%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V E VT C+ + K+G + K Q + F L V
Sbjct: 109 EVISGEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGYGKVQ-------AEFPLGPV---T 157
Query: 62 EQDGGVYWCLA--RNSVGTAVSRNATLQV 88
G Y C N + S L V
Sbjct: 158 TAHRGTYRCFGSYNNHAWSFPSEPVKLLV 186
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 41.6 bits (97), Expect = 1e-05
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 3 VAKNEPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
E TL+C+ G + T+ + + + + R + L
Sbjct: 101 QPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLA---- 156
Query: 60 KKEQDGGVYWCLARNSV---GTAVSRNATLQVAVVIFFIS 96
++E G + C A + G + N++ + F +S
Sbjct: 157 RREDHGANFSCRAELDLRPHGLGLFENSSAPRELRTFSLS 196
Score = 33.9 bits (77), Expect = 0.007
Identities = 10/87 (11%), Positives = 20/87 (22%), Gaps = 14/87 (16%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + + LNC ETS ++ L +
Sbjct: 13 FVERGGSLWLNCSTNCPRPERGGL-------ETSLR--RNGTQRGLRWLARQLVDI---- 59
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
+ C R + + ++
Sbjct: 60 REPETQPVCFFRCA-RRTLQARGLIRT 85
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 42.1 bits (97), Expect = 1e-05
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 9/82 (10%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
L C + + W +++ ++ +L + E D GVY
Sbjct: 551 AELKCSQKS-NLARVFWKFQNGVLKAESPK----YGLMGRKNLLIFNL----SEGDSGVY 601
Query: 69 WCLARNSVGTAVSRNATLQVAV 90
CL+ V + +
Sbjct: 602 QCLSEERVKNKTVFQVVAKHVL 623
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 41.1 bits (96), Expect = 2e-05
Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 13/85 (15%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQ--------RVILPTGSLFF 53
VT + P + W K + V ++ + +GSL
Sbjct: 6 YGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64
Query: 54 LRVVHGKKEQDGGVYWCLARNSVGT 78
+ D Y + N T
Sbjct: 65 YNL----TSSDEDEYEMESPNITDT 85
Score = 36.1 bits (83), Expect = 0.001
Identities = 10/80 (12%), Positives = 23/80 (28%), Gaps = 17/80 (21%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ + TL C+ + ++ Y+ E + + Q+ + +
Sbjct: 101 IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-----RQKTMSYQWT----------- 144
Query: 62 EQDGGVYWCLARNSVGTAVS 81
+ C A N V
Sbjct: 145 -NLRAPFKCKAVNRVSQESE 163
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 41.4 bits (96), Expect = 2e-05
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 22/80 (27%)
Query: 9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
V L C TI+W KDG ++ + + + + G Y
Sbjct: 125 VLLTCGLTD---KTIKWLKDGSIISPLNATKNTWNL-------------GNNAKDPRGTY 168
Query: 69 WCLARNSVGTAVSRNATLQV 88
C LQV
Sbjct: 169 QCQGAKETSN------PLQV 182
Score = 39.1 bits (90), Expect = 9e-05
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 16/72 (22%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
V L C + + ++W K+G+ + + ++L S + +D G
Sbjct: 15 TSVELTCPLD--SDENLKWEKNGQELP----QKHDKHLVLQDFS----------EVEDSG 58
Query: 67 VYWCLARNSVGT 78
Y C S
Sbjct: 59 YYVCYTPASNKN 70
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 41.4 bits (97), Expect = 2e-05
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V++ VT+ C+ K+ + + + + F + +
Sbjct: 15 VISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPK----NKARFSIPSM---T 66
Query: 62 EQDGGVYWCLARNSVGT 78
E G Y C R+ VG
Sbjct: 67 EDYAGRYRCYYRSPVGW 83
Score = 39.4 bits (92), Expect = 8e-05
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+V + VTL C++ P T K+ S+ + F + V
Sbjct: 110 LVTSGKSVTLLCQSR-SPMDTFLLCKERAAHPLLCLR--SEHGAQQHQAEFPMSPV---T 163
Query: 62 EQDGGVYWCLARNS 75
GG Y C + +
Sbjct: 164 SVHGGTYRCFSSHG 177
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 41.0 bits (95), Expect = 2e-05
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 13/89 (14%)
Query: 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+ VA L C+ +++W + +SD S+ +R
Sbjct: 17 VAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSD--------TGRSVLTVRNA-- 66
Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
G C+ T L V
Sbjct: 67 -SLSAAGTRVCVGSCGGRT-FQHTVQLLV 93
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 41.0 bits (95), Expect = 2e-05
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 7 EPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
+ +TL C+ EG + T+ + + ++ + + V V +++
Sbjct: 102 KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTT---------TVLVRRDH 152
Query: 64 DGGVYWCLARNSV---GTAVSRNATLQVAVVIFF 94
G + C + G + N + + F
Sbjct: 153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFV 186
Score = 31.8 bits (71), Expect = 0.036
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V+ + T+ C +G P E V + D + + F +
Sbjct: 199 VLEVDTQGTVVCSLDGLF-PVSEA-----QVHLALGDQRLNPTVTYGNDSFSAKASVSVT 252
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
+D G +G S+ V + F
Sbjct: 253 AEDEGTQRLTCAVILGNQ-SQETLQTVTIYSF 283
Score = 30.6 bits (68), Expect = 0.088
Identities = 9/92 (9%), Positives = 23/92 (25%), Gaps = 16/92 (17%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
++ + V + C + + L + + R + ++
Sbjct: 10 ILPRGGSVLVTCSTSCDQPKLLGI--ETPLPKKELLLPGNNRKVYELSNV---------- 57
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
Q+ C + G A + V
Sbjct: 58 -QEDSQPMCYSNCPDGQ---STAKTFLTVYWT 85
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 40.7 bits (95), Expect = 2e-05
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 14/94 (14%)
Query: 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLF----FLR 55
+ + + C G PEP + W ++GE + + + P L+ L
Sbjct: 116 FEIPTSNIRRIICSTSGGFPEPHLSWLENGEEL----NAINTTVSQDPETELYAVSSKLD 171
Query: 56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVA 89
+ CL + V++ A
Sbjct: 172 F----NMTTNHSFMCLIKYGHLR-VNQTFNWNTA 200
Score = 38.8 bits (90), Expect = 1e-04
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 11/102 (10%)
Query: 2 VVAKNEPVTLNCK----AEGKPEPTIEWYKDGELVETSKSDAKSQ------RVILPTGSL 51
E TL+C E + I W K+ ++V T S + R I +
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 52 FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
+ + + D G Y C+ A R +V + +
Sbjct: 65 LSIVI-LALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVK 105
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 39.3 bits (92), Expect = 3e-05
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V+ + VTL C + ++ + +G L K K Q + F V
Sbjct: 15 GVSLGDTVTLRCHLP-RMAAWVQLWLNGTL-RFDKEKDKEQDA-----AEFSFAVT---N 64
Query: 62 EQDGGVYWCLARNSVGTAVS 81
+D G Y C + S S
Sbjct: 65 LEDAGTYQCRYQVSEPLWTS 84
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 40.7 bits (95), Expect = 3e-05
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+V E V L C ++ E + +++G +T + + + + + F + +
Sbjct: 18 LVKSEETVILQCWSDVMFEHFL-LHREGMFNDTLRLIGEHHDGV--SKANFSISRM---T 71
Query: 62 EQDGGVYWCLARNS 75
+ G Y C +
Sbjct: 72 QDLAGTYRCYGSVT 85
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 40.0 bits (93), Expect = 4e-05
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 18/81 (22%)
Query: 9 VTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
+ L C E + W G + + + L V +
Sbjct: 127 LHLTCSVEDADDNVSFRWEALGNTLSSQPN----------------LTVSWDPRISSEQD 170
Query: 68 YWCLARNSVGTAVSRNATLQV 88
Y C+A N+V S + + Q
Sbjct: 171 YTCIAENAVSNL-SFSVSAQK 190
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 39.8 bits (93), Expect = 4e-05
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V+ VTL C+ YK+G+ + + + F + V
Sbjct: 104 AVSSGGDVTLQCQTRY-GFDQFALYKEGDPAPYKNPERWYR-------ASFPIITV---T 152
Query: 62 EQDGGVYWCLARNS 75
G Y C + +S
Sbjct: 153 AAHSGTYRCYSFSS 166
Score = 36.3 bits (84), Expect = 0.001
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 21/79 (26%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIE--WYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
+V +PVTL C+ P K ++ F+ +
Sbjct: 18 LVPLEKPVTLRCQG---PPGVDLYRLEKLSSSRYQDQAV-------------LFIPAM-- 59
Query: 60 KKEQDGGVYWCLARNSVGT 78
K G Y C +N
Sbjct: 60 -KRSLAGRYRCSYQNGSLW 77
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 39.7 bits (92), Expect = 5e-05
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 3 VAKNEPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
VA + T+ C+ T+ ++ E + + T +
Sbjct: 100 VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTA---- 155
Query: 60 KKEQDGGVYWCLARNSVG 77
+E + CLA +
Sbjct: 156 DREDGHRNFSCLAVLDLM 173
Score = 27.4 bits (60), Expect = 0.97
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 15/87 (17%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V + +NC +P + ETS + + + +
Sbjct: 13 AVEPKGSLEVNCSTTC-NQPEVGGL------ETSLNKILLDEQ--AQWKHYLVSNI---- 59
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
V C S G S N+ + V
Sbjct: 60 -SHDTVLQCHFTCS-GKQESMNSNVSV 84
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 38.7 bits (90), Expect = 5e-05
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 11/96 (11%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD--AKSQRVIL--PTGSLFFLRV 56
+ V + L C+ + +++W + + R+ L + +
Sbjct: 16 VTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS- 74
Query: 57 VHGKKEQDGGVYWCLARNSVGTA--VSRNATLQVAV 90
V D G Y C S+ T + A L V
Sbjct: 75 VSDVSLSDEGQYTC----SLFTMPVKTSKAYLTVLG 106
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 38.0 bits (88), Expect = 1e-04
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 14/101 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEP--TIEWYKDGELVET-------SKSDAKSQRV-ILPTGS 50
+ K + L C + W + +L+ S + RV P
Sbjct: 13 ISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLG 72
Query: 51 LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
L + D G Y+C+ + L+V
Sbjct: 73 LTLQSL----TVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 39.3 bits (90), Expect = 1e-04
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 17/74 (22%)
Query: 7 EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
E V L C + E I W D +L +G ++V D G
Sbjct: 22 EMVVLTC--DTPEEDGITWTLDQS------------SEVLGSGKTLTIQVKE---FGDAG 64
Query: 67 VYWCLARNSVGTAV 80
Y C V +
Sbjct: 65 QYTCHKGGEVLSHS 78
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 37.9 bits (87), Expect = 1e-04
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 15/98 (15%)
Query: 1 MVVAKNEPVTLNCKAEGKP---EPTIEWYKDGELVETSKSDAKSQ-------RVILPTGS 50
+ V + + K GK +PTI+W+K L SKS A+ + T
Sbjct: 22 VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVE 81
Query: 51 LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
L +V D G Y + S + V
Sbjct: 82 LHIGKV----VLGDRGYYRLEVKAKDTC-DSCGFNIDV 114
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 38.7 bits (90), Expect = 1e-04
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
VV E VTL C + + ++G+ + D++ V
Sbjct: 110 VVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPV----T 164
Query: 62 EQDGGVYWCLARNS 75
+ C
Sbjct: 165 PSHRWMLRCYGSRR 178
Score = 38.3 bits (89), Expect = 2e-04
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V+++ VT+ C+ K+G +Q + P F +
Sbjct: 15 VISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWD-----TQNPLEPKNKARFS--IPSMT 66
Query: 62 EQDGGVYWCLARNSVGT 78
E G Y C + G
Sbjct: 67 EHHAGRYRCYYYSPAGW 83
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 37.0 bits (86), Expect = 2e-04
Identities = 11/79 (13%), Positives = 18/79 (22%), Gaps = 9/79 (11%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEW--YKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
V+ VT C+ P + ++ D V
Sbjct: 19 VIPLGSHVTFVCRG---PVGVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSV--- 72
Query: 60 KKEQDGGVYWCLARNSVGT 78
E + G Y C+
Sbjct: 73 -SEGNAGPYRCIYYKPPKW 90
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 37.3 bits (86), Expect = 2e-04
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Query: 7 EPVTLNCKAEGKPE--PTIEWYKDG------ELVETSKS--DAKSQRVIL---PTGSLFF 53
+ +T+ C+ W K+ LV +SK A + R + P F
Sbjct: 26 QTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFT 85
Query: 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ + ++E D G YWC +VS++ + V
Sbjct: 86 VTMTDLREE-DSGHYWCRIYRPSDNSVSKSVRFYLVV 121
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 37.7 bits (86), Expect = 4e-04
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
+ +A N L+C E T W + + P LF +
Sbjct: 510 VSLAPNSRYYLSCPMES-RHATYSWRHKE-----NVEQSCEPGHQSPNCILFIENL---- 559
Query: 61 KEQDGGVYWCLAR-NSVGTAVSR 82
Q G Y+C A+ S
Sbjct: 560 TAQQYGHYFCEAQEGSYFREAQH 582
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 37.1 bits (86), Expect = 5e-04
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
VV VTL C ++ K+GE +++ + ++F + V
Sbjct: 111 VVNSGGNVTLQCDSQVAF-DGFILCKEGEDEHPQCLNSQ-PHARGSSRAIFSVGPV---S 165
Query: 62 EQDGGVYWCLARNS 75
Y C A +S
Sbjct: 166 PSRRWWYRCYAYDS 179
Score = 36.7 bits (85), Expect = 6e-04
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V+ + PVTL C+ + + Y++ + T+ + + ++ G +
Sbjct: 15 VITQGSPVTLRCQGGQETQ-EYRLYREKK---TAPWITRIPQELVKKGQFPIPSI----T 66
Query: 62 EQDGGVYWCLARNS 75
+ G Y C +
Sbjct: 67 WEHTGRYRCYYGSD 80
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 36.0 bits (83), Expect = 5e-04
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 7 EPVTLNCKAEGK-PEPTIEWYKDGE------LVETSKS-DAKSQRVIL---PTGSLFFLR 55
+++ C E + W + + +VET S ++ RV + P F +
Sbjct: 12 GSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVT 71
Query: 56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
+ + +E D G YWC ++ + ++V V +F
Sbjct: 72 LENLTEE-DAGTYWC-GVDTPWLQDFHDPVVEVEVSVF 107
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 36.9 bits (84), Expect = 8e-04
Identities = 18/96 (18%), Positives = 25/96 (26%), Gaps = 10/96 (10%)
Query: 3 VAKNEPVTLNCKAEG---KPEPTIEWYKDGEL----VETSKSDAKSQRVILPTGS---LF 52
P L C +EW G + S GS
Sbjct: 305 APGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSG 364
Query: 53 FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
L+ EQ G Y C + A R+A + +
Sbjct: 365 HLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTL 400
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 35.7 bits (82), Expect = 8e-04
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 1 MVVAKNEPVTLNCKA-EGKPEPTIEWYK--DGELVETSKSDAK------SQRVIL--PTG 49
M V VTLN + + W+ D ++VE +K RV L +G
Sbjct: 14 MTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSG 73
Query: 50 SLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+L+ +V +++D Y G LQV
Sbjct: 74 ALYISKV----QKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 34.6 bits (79), Expect = 0.002
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQR-----VILPTGSLFFLRVV 57
V E + + W+ +GE +++++ + + + I G L +
Sbjct: 20 VYDGEDAVFSL--DLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILH 77
Query: 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
K + G + V +A L +
Sbjct: 78 AVKHQDSGALVGFSCPG-----VQDSAALTI 103
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 34.6 bits (79), Expect = 0.003
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 21/95 (22%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGELVETSK----SDAKSQRVILP------- 47
M + V L C+ G W + + ++
Sbjct: 19 MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSK 78
Query: 48 -------TGSLFFLRVVHGKKEQDGGVYWCLARNS 75
T + + L ++ +++ G Y+C ++
Sbjct: 79 LFSAMRDTNNKYVLT-LNKFSKENEGYYFCSVISN 112
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 34.0 bits (77), Expect = 0.005
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD--AKSQRVIL--PTGSLFFLRV 56
V V L C+ + + +++W + + R+ L T +
Sbjct: 48 ETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSIS- 106
Query: 57 VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVI 92
+ D G Y C S+ T R A V V+
Sbjct: 107 ISNVALADEGEYTC----SIFTMPVRTAKSLVTVLG 138
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 34.3 bits (78), Expect = 0.005
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 20/107 (18%)
Query: 2 VVAKNEPVTLNCKAEGKPEP-----TIEWYK----DGELV-----ETSKSDAKSQRVILP 47
+ N+ VT+ C I W+ + V +A I+
Sbjct: 14 ITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVS 73
Query: 48 TGSL----FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
L LR + G + ++ G Y C + A L+V
Sbjct: 74 PWRLKSGDASLR-LPGIQLEEAGEYRCEVVVTPLKA-QGTVQLEVVA 118
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 33.8 bits (77), Expect = 0.005
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 18/112 (16%)
Query: 2 VVAKNEPVTLNCKAEGKPEPT---IEW-----------YKDGELVETSKSDAKSQRVILP 47
+ L C+ T + W Y++G+ + ++ R L
Sbjct: 17 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 76
Query: 48 TGSLFFLRV---VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
S+ +V + + D G Y C R+ L+V ++I+
Sbjct: 77 KESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPFYWIN 127
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 33.4 bits (76), Expect = 0.006
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 21/95 (22%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGELVETSK---SDAKSQRVILP-------- 47
M + V L C+ G W + A S I
Sbjct: 14 MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSK 73
Query: 48 -------TGSLFFLRVVHGKKEQDGGVYWCLARNS 75
T + + L ++ +++ G Y+C ++
Sbjct: 74 LFSAMRDTNNKYVL-TLNKFSKENEGYYFCSVISN 107
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1;
signal regulatory protein alpha, immunoglobulin
superfamily, phosphoprotein; HET: NAG; 2.49A {Homo
sapiens}
Length = 327
Score = 33.8 bits (77), Expect = 0.009
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 11/80 (13%)
Query: 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYKDG----ELVETSKSDAKSQRVILPT-----GS 50
+ VA E L+C P I+W++ EL+ K + +
Sbjct: 13 VSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENM 72
Query: 51 LFFLRVVHGKKEQDGGVYWC 70
F + + D G Y+C
Sbjct: 73 DFSIS-ISNITPADAGTYYC 91
Score = 30.7 bits (69), Expect = 0.092
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 6 NEPVTLNCKAEG-KPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLF---FLRVVHGK 60
V + C+ P+ + W ++G + T + S G+ +L V
Sbjct: 235 ENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETA---STVTENKDGTYNWMSWLLVNV-S 290
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
+D C + AVS++ L+V
Sbjct: 291 AHRDDVKLTCQVEHDGQPAVSKSHDLKV 318
Score = 28.7 bits (64), Expect = 0.42
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 6 NEPVTLNCKAEG-KPEP-TIEWYKDGELVETSKS 37
V+ C++ G P T++W+K+G + ++
Sbjct: 132 QHTVSFTCESHGFSPRDITLKWFKNGNELSDFQT 165
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 32.3 bits (74), Expect = 0.009
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 9/77 (11%)
Query: 2 VVAKNEPVTLNCKAEGKPE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
++++ VT+ C + + + + S KS V
Sbjct: 19 MISQGTFVTVVC--SYSDKHDLYNMVRLEK--DGSTFMEKSTEPYKTEDEFEIGPV---- 70
Query: 61 KEQDGGVYWCLARNSVG 77
E G Y C+ +
Sbjct: 71 NETITGHYSCIYSKGIT 87
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, extra celluar domain, domain
swappin nysgrc, structural genomics; 1.90A {Mus
musculus}
Length = 118
Score = 32.8 bits (75), Expect = 0.009
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
++++ VT+ C K + + + + S KS V
Sbjct: 19 MISQGTFVTVVCSYSDKHD-LYNMVRLEK--DGSTFMEKSTEPYKTEDEFEIGPV----N 71
Query: 62 EQDGGVYWCLARNSVGT 78
E G Y C+ +
Sbjct: 72 ETITGHYSCIYSKGITW 88
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 32.2 bits (73), Expect = 0.014
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 7 EPVTLNCK-AEGKPEPTIEWYKDGE------LVETSKS--DAKSQRVIL---PTGSLFFL 54
+T+ C G W + LV+TS S + K RV + F +
Sbjct: 18 GSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTV 77
Query: 55 RVVHGKKEQDGGVYWC 70
+ K D YWC
Sbjct: 78 TMEDLMKT-DADTYWC 92
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 31.3 bits (71), Expect = 0.038
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 17/98 (17%)
Query: 9 VTLNCKAEG-------------KPEPTIEWYKDGELVETSKSDAKSQRVIL---PTGSLF 52
+ + C + + E + + R+IL L
Sbjct: 22 LDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL 81
Query: 53 FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+R+V + +D G+Y C+ +++ V
Sbjct: 82 RVRMV-NLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 118
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 30.9 bits (69), Expect = 0.041
Identities = 19/87 (21%), Positives = 25/87 (28%), Gaps = 2/87 (2%)
Query: 3 VAKNEPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
+ +P L C P + W K D ++ S F L
Sbjct: 23 ILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLP 82
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
D G Y C A S + TL V
Sbjct: 83 N-DNGSYRCSANFQSNLIESHSTTLYV 108
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 31.0 bits (70), Expect = 0.045
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 20/101 (19%)
Query: 7 EPVTLNCKAEGK---PEPTIEWYKDG------ELVET--SKSDAKSQRVIL---PTGSLF 52
V++ C W + G L+ + S + R L P F
Sbjct: 16 NSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTF 75
Query: 53 FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
+ + ++ D G Y C +G SR + V++ +
Sbjct: 76 VVNIAQLSQD-DSGRYKC----GLGI-NSRGLSFDVSLEVL 110
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 30.7 bits (69), Expect = 0.053
Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 17/101 (16%)
Query: 7 EPVTLNCK---AEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPT---GSLFFLRVVHG 59
V + C G + ++W G T + I G L V G
Sbjct: 17 GDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPG 76
Query: 60 K--------KEQDGGVYWC--LARNSVGTAVSRNATLQVAV 90
+ D Y C + G V R+ +++ V
Sbjct: 77 DVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRV 117
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B
1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B
1i1f_B 1i1y_B 1duz_B* ...
Length = 100
Score = 30.4 bits (69), Expect = 0.056
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 6 NEPVTLNCKAEG--KPEPTIEWYKDGELVE 33
+ LNC G + ++ K+GE +E
Sbjct: 19 GKSNFLNCYVSGFHPSDIEVDLLKNGERIE 48
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 31.2 bits (70), Expect = 0.068
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKS 37
M V K + V ++ K E YK+G + +
Sbjct: 109 MTVDKGDNVNISFKKVLIKEEDAVIYKNGSFIHSVPR 145
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel,
immune response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 30.0 bits (68), Expect = 0.078
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 6 NEPVTLNCKAEG--KPEPTIEWYKDGELVE 33
+ LNC G + ++ K+GE +E
Sbjct: 38 GKSNFLNCYVSGFHPSDIEVDLLKNGERIE 67
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, immune system; HET:
16A; 1.32A {Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B
3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 30.0 bits (68), Expect = 0.078
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 3 VAKNEPVTLNCKAEG--KPEPTIEWYKDGELVE 33
+ LNC A G P+ +I KDG +E
Sbjct: 15 ASAGTKNVLNCFAAGFHPPKISITLMKDGVPME 47
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 30.9 bits (69), Expect = 0.087
Identities = 11/107 (10%), Positives = 20/107 (18%), Gaps = 15/107 (14%)
Query: 1 MVVAKNEPVTLNCK-------AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFF 53
VV + T C I W + + + +I T S
Sbjct: 14 PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQY-----TIINRTASSVT 68
Query: 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRF 100
+ Q + T+ +
Sbjct: 69 FTDIASLNIQLTCNILTFGQLEQNVYG---ITIISGLPPEKPKNLSC 112
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, MHC class I molecule
from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 30.1 bits (68), Expect = 0.093
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 3 VAKNEPVTLNCKAEG--KPEPTIEWYKDGELVE 33
+ LNC A G P+ +I KDG +E
Sbjct: 35 ASAGTKNVLNCFAAGFHPPKISITLMKDGVPME 67
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 30.6 bits (69), Expect = 0.095
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYK---DGELV-----ETSKSDAKSQRV---ILPT 48
+ + + VTLNC E I WYK E++ + + +AKS R
Sbjct: 146 VSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKA 205
Query: 49 GSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79
L + + +D Y+C S+ A
Sbjct: 206 AKSVALT-ISALQLEDSAKYFCALGESLTRA 235
Score = 30.2 bits (68), Expect = 0.13
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK 27
++ + C I WY
Sbjct: 12 VIRQTGSSAEITCDLAEGSTGYIHWYL 38
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 30.2 bits (68), Expect = 0.11
Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 13/90 (14%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDG---ELV-------ETSKSDAKSQRVILPT 48
+V + + V L C + P + WY + + + +
Sbjct: 11 RLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR 70
Query: 49 GSLFFLRVVHGKKEQDGGVYWCLARNSVGT 78
+ LR + G +C + T
Sbjct: 71 VTDTELR-LQVANMSQGRTLYCTSSADHWT 99
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 29.8 bits (67), Expect = 0.12
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 17/98 (17%)
Query: 9 VTLNCKAEGKPEPTIE--WYKDGE------LVETSKS-----DAKSQRVIL---PTGSLF 52
+ + C + + + W + L T + + R+IL L
Sbjct: 17 LDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL 76
Query: 53 FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+R+ + +D G+Y C+ +++ V
Sbjct: 77 RVRM-VNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 113
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 29.7 bits (67), Expect = 0.12
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 7 EPVTLNCK-AEGKPEPTIEWYK---DGE---LVET--SKSDAKSQRVIL---PTGSLFFL 54
+T+ C+ G + W + LVET S+ K RV + +F +
Sbjct: 17 GSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTV 76
Query: 55 RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
+ + D G+YWC G T+ +
Sbjct: 77 TMEDLRMS-DAGIYWC-GITKGGLDPMFKVTVNI 108
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 29.5 bits (66), Expect = 0.15
Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 22/82 (26%)
Query: 7 EPVTLNCKAEGKPEP-TIEWYK---------------DGELVETSKSDAKSQRVILPTG- 49
PVTL C T W + +G V KS + + + G
Sbjct: 13 HPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGD 72
Query: 50 -SLFFLRVVHGKKEQDGGVYWC 70
SL E D G+Y C
Sbjct: 73 VSLTIENS----VESDSGLYCC 90
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 29.2 bits (65), Expect = 0.19
Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 21/111 (18%)
Query: 1 MVVAKNEPVTLNCK----AEGKPEPTIEWYK--DGELVETSKSDAKSQRVILPTGSLFFL 54
+ A VTL+C + + W +G S + + F
Sbjct: 9 VYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKE 68
Query: 55 RV--------------VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
R+ +H D G + C +N + + + + V
Sbjct: 69 RIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVG-KTSQVTLYVF 118
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 28.8 bits (65), Expect = 0.19
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 6 NEPVTLNCKAEG--KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK-KE 62
+ TL C G P+ +IE K+GE++ ++ + F K
Sbjct: 18 GKENTLICYVSGFHPPDISIELLKNGEVIADAQQT-----DLAFEKGWQFHLTKSVSFKP 72
Query: 63 QDGGVYWC 70
+ Y C
Sbjct: 73 EKSDEYSC 80
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 29.1 bits (65), Expect = 0.20
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 31 LVETSKS-DAKSQRVIL---PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATL 86
LV ++ A + R G L + +V +E+D G Y C+ + G + +L
Sbjct: 43 LVSSAVDRRAPAGRRTFLTDLGGGLLQVEMV-TLQEEDAGEYGCMVDGARGPQILHRVSL 101
Query: 87 QV 88
+
Sbjct: 102 NI 103
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 29.1 bits (65), Expect = 0.20
Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 16/85 (18%)
Query: 2 VVAKNEPVTLNCKAEGKPEPT---IEWYKDGELVETSKSDAKSQ---RVILPTGSLFFLR 55
V + L C T + W K ++ V S + L+
Sbjct: 5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64
Query: 56 ----------VVHGKKEQDGGVYWC 70
++ D G Y C
Sbjct: 65 GDLNKGDVSLIIKNVTLDDHGTYCC 89
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high
resolution, anisotropic AN refinement, immune system;
HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB:
1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L
1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L*
1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 28.5 bits (64), Expect = 0.23
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 6 NEPVTLNCKAEG--KPEPTIEWYKDGELVE 33
+P LNC P I+ K+G+ +
Sbjct: 18 GKPNILNCYVTQFHPPHIEIQMLKNGKKIP 47
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 29.3 bits (65), Expect = 0.28
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 12/90 (13%)
Query: 1 MVVAKNEPVTLNCKAEG-KPEPTIEWYK---DGELV------ETSKSDAKSQR--VILPT 48
+ V + E VTL+C E + WYK GELV + + S R
Sbjct: 13 ISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQK 72
Query: 49 GSLFFLRVVHGKKEQDGGVYWCLARNSVGT 78
+ F + + D VY+C T
Sbjct: 73 STSSFNFTITASQVVDSAVYFCALSGFYNT 102
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D
3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D
2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 29.2 bits (65), Expect = 0.31
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 11/89 (12%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK---DGELV----ETSKSDAKSQRVIL---PTGS 50
+ V + +LNC + + WY+ S D K R
Sbjct: 12 LSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASL 71
Query: 51 LFFLRVVHGKKEQDGGVYWCLARNSVGTA 79
L + + D +Y+C A A
Sbjct: 72 HVSLHIRDSQPS-DSALYFCAASEQNNYA 99
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo
sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A*
1fp5_A 1f6a_B 1g84_A
Length = 323
Score = 29.3 bits (65), Expect = 0.31
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 6 NEPVTLNCKAEG-KPEP-TIEWYKDGELVETS 35
+ L C G P I W +DG++++
Sbjct: 24 PPTIQLLCLVSGYTPGTIQITWLEDGQVMDVD 55
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 28.7 bits (64), Expect = 0.31
Identities = 24/116 (20%), Positives = 35/116 (30%), Gaps = 31/116 (26%)
Query: 1 MVVAKNEPVTLNCKAEGKPEP----TIEW---------------YKDGELVETSKSDAKS 41
+ AK E L CK PE IEW G+ +
Sbjct: 15 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLK 74
Query: 42 QRVILPTG-------SLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
RV + S+ + + D G Y C + + G A ++ L V V
Sbjct: 75 GRVHFTSNDLKSGDASINVTNL----QLSDIGTYQCKVKKAPGVA-NKKIHLVVLV 125
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 28.7 bits (63), Expect = 0.32
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 19/97 (19%)
Query: 3 VAKNEPVTLNCKAE-GKPEPTIEWYK----------DGELVETSKSDAKSQRVILPTGSL 51
E + C + P + W K G + TS + +S +
Sbjct: 26 AWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSV-------PV 78
Query: 52 FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
F L D G Y C + S + T+ V
Sbjct: 79 FVLHFKPIHLS-DNGSYSCSTNFNSQVINSHSVTIHV 114
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 28.6 bits (64), Expect = 0.33
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 6 NEPVTLNCKAEG--KPEPTIEWYKDGELVE 33
+P LNC P I+ K+G+ +
Sbjct: 38 GKPNILNCYVTQFHPPHIEIQMLKNGKKIP 67
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I
3e2h_B 3e3q_D
Length = 226
Score = 28.8 bits (64), Expect = 0.37
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK 27
+ V++ + L CK P + WY
Sbjct: 19 VTVSEGASLQLRCKYSYSATPYLFWYV 45
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A
{Mus musculus} PDB: 3c60_A
Length = 200
Score = 28.4 bits (63), Expect = 0.43
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK--DGE----LVETSKSDAK--SQRVILP---TG 49
+ +++N+ + +NC PT+ WY GE L++ + ++ K S+
Sbjct: 10 VTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGT 69
Query: 50 SLFFLRVVHGKKEQDGGVYWCLARNS 75
+ F L+ +E D VY+C A +
Sbjct: 70 TSFHLQ-KTSVQEIDSAVYYCAANSG 94
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 28.5 bits (63), Expect = 0.48
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK 27
+++ + + TL C P + WYK
Sbjct: 13 LIILEGKNCTLQCNYTVSPFSNLRWYK 39
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region;
superagonist peptide T-cell vaccines, transmembrane,
immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D
2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D*
3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 28.4 bits (63), Expect = 0.48
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 7 EPVTLNCKAEGKPEPTIEWYK 27
E + LNC ++W++
Sbjct: 16 ENLVLNCSFTDSAIYNLQWFR 36
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 28.0 bits (63), Expect = 0.51
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 1 MVVAKNEPVTLNCKAEGK-PEPTIEWYK 27
VA V L C + P + WY+
Sbjct: 10 QTVASGSEVVLLCTYDTVYSNPDLFWYR 37
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N
2i26_N
Length = 121
Score = 27.7 bits (62), Expect = 0.53
Identities = 20/86 (23%), Positives = 26/86 (30%), Gaps = 26/86 (30%)
Query: 7 EPVTLNCKAEG-------------KPEPTIEW--YKDGELVETSKSDAKSQRVILPTGSL 51
E +T+NC P E G VET +KS
Sbjct: 16 ESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKS---------- 65
Query: 52 FFLRVVHGKKEQDGGVYWCLARNSVG 77
F LR+ + D G Y C + G
Sbjct: 66 FSLRINDLTVK-DSGTYRCKPESRYG 90
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 28.4 bits (63), Expect = 0.55
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK 27
+ V + + C + WY+
Sbjct: 10 LHVQEGDSTNFTCSFPSSNFYALHWYR 36
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 28.3 bits (63), Expect = 0.58
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 7 EPVTLNCKAEGKPEPTIEWYK---DGELV----ETSKSDAKSQRVILP---TGSLFFLRV 56
V +NC + + WY+ + R + +L
Sbjct: 15 AIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLL- 73
Query: 57 VHGKKEQDGGVYWCLARNSVGT 78
+ + +D Y C + S G+
Sbjct: 74 LKELQMKDSASYLCAVQASGGS 95
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 27.7 bits (62), Expect = 0.62
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 1 MVVAKNEPVTLNCKAE-GKPEPTIEWYK---DGELV------ETSKSDAKSQR--VILPT 48
+ V + VT++C E + WYK GE+V K +A +
Sbjct: 10 ISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQK 69
Query: 49 GSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79
++ + +D VY+C R G +
Sbjct: 70 PKSSIGLIITATQIEDSAVYFCAMRGDYGGS 100
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 27.6 bits (61), Expect = 0.65
Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 23/83 (27%)
Query: 7 EPVTLNCKAEGKPEP--TIEWYK---------------DGELVETSKSDAKSQRVILPTG 49
PVTL C + W +G V ++ + + G
Sbjct: 13 HPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEG 72
Query: 50 --SLFFLRVVHGKKEQDGGVYWC 70
SL DGG Y C
Sbjct: 73 NVSLTIENT----VVGDGGPYCC 91
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D
3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 28.0 bits (62), Expect = 0.65
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 1 MVVAKNEPVTLNCKAEGK-PEPTIEWYK--DGE----LVETSKSDAKSQRV---ILPTGS 50
M + EPV L C I WY+ + ++ S+ ++ I
Sbjct: 9 MESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRK 68
Query: 51 LFFLRVVHGKKEQDGGVYWCLARNS 75
L +H +D VY+C+ +
Sbjct: 69 SSTLI-LHRATLRDAAVYYCILPLA 92
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 28.3 bits (62), Expect = 0.75
Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 11/77 (14%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
V+ +T C ++ K + + + L+ +R +
Sbjct: 209 VILVGSDITFCCVSQEKVLSALIGHTNCPLIHLD-----------GENVAIKIRNISVSA 257
Query: 62 EQDGGVYWCLARNSVGT 78
V + N GT
Sbjct: 258 SSGTNVVFTTEDNIFGT 274
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 27.5 bits (61), Expect = 0.84
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 17/101 (16%)
Query: 7 EPVTLNCKAEGKPEPT-----IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK- 60
+ VTL C + + W + GE + + L F+ G
Sbjct: 16 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAE 75
Query: 61 -----------KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
+ +D G Y CL + S + L+V
Sbjct: 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2
Length = 185
Score = 27.5 bits (61), Expect = 0.88
Identities = 7/21 (33%), Positives = 7/21 (33%)
Query: 7 EPVTLNCKAEGKPEPTIEWYK 27
E LNC E WY
Sbjct: 16 ETAILNCSYEDSTFDYFPWYH 36
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 27.3 bits (61), Expect = 0.89
Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 13/89 (14%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYK--DGELVE----------TSKSDAKSQRVILPTG 49
+V + + V L C + P + WY+ + ++ +
Sbjct: 12 LVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV 71
Query: 50 SLFFLRVVHGKKEQDGGVYWCLARNSVGT 78
+ LR + G +C
Sbjct: 72 TDTELR-LQVANMSQGRTLYCTCSADRVG 99
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 27.7 bits (61), Expect = 0.94
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK 27
+ + + PV LNC + P + WY
Sbjct: 11 VTLTEGLPVMLNCTYQSTYSPFLFWYV 37
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 27.6 bits (61), Expect = 1.00
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 15/83 (18%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDG---ELVETSKSDAKSQR--------VILP 47
V VTL+C+ + WY G L+ S +++ P
Sbjct: 9 KVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP 67
Query: 48 TGSLFFLRVVHGKKEQDGGVYWC 70
+ F L + VY+C
Sbjct: 68 SQEQFSLI-LELATPSQTSVYFC 89
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 27.2 bits (61), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 9 VTLNCKA-EGKPEPTIEWYKDG----ELVETSKSDAKS 41
VT+ C A + P+ T+ W DG +E SK+ S
Sbjct: 132 VTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNS 169
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 27.1 bits (59), Expect = 1.2
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 28/95 (29%)
Query: 3 VAKNEPVTLNCKAEGKPE---PTIEWYK-----DGELVETSKSDAKSQ------------ 42
V V L C + + P I W K V + + +
Sbjct: 16 VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKE 75
Query: 43 -------RVILPTGSLFFLRVVHGKKEQDGGVYWC 70
R + + L + QDGG YWC
Sbjct: 76 SFGDFLGRASVANLAAPTL-RLTHVHPQDGGRYWC 109
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 26.8 bits (59), Expect = 1.3
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 19/81 (23%)
Query: 7 EPVTLNCKAEGKPEP--TIEWYKDG--------ELVETSKSDA---KSQRVILPTGSL-- 51
+PVTL C + ++ W K EL+ T + KS + L G +
Sbjct: 12 QPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTL-LGKVQF 70
Query: 52 --FFLRVVHGKKEQDGGVYWC 70
L + + D GVY C
Sbjct: 71 GEVSLTISN-TNRGDSGVYCC 90
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 27.5 bits (61), Expect = 1.3
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 9 VTLNCKAEG-KPEP-TIEWYKDGELVETSK 36
V+L C +G P +EW +G+ K
Sbjct: 260 VSLTCLVKGFYPSDIAVEWESNGQPENNYK 289
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 27.1 bits (60), Expect = 1.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK 27
+V P++L C EG P + WY+
Sbjct: 11 LVQPVGSPLSLECTVEGTSNPNLYWYR 37
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 27.0 bits (59), Expect = 1.4
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 7 EPVTLNCKAEGKPEPTIEWYK 27
E L C P+ + WYK
Sbjct: 17 ENCVLQCNYSVTPDNHLRWYK 37
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 27.1 bits (60), Expect = 1.5
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 14/89 (15%)
Query: 9 VTLNCKAEG----KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLF----FLRVVHGK 60
+ C PE WY DG V +K+ + ++ S + L V+H
Sbjct: 267 PEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ----YNSTYRVVSVLTVLHQD 322
Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVA 89
+G Y C ++ T+ A
Sbjct: 323 WL-NGKEYKC-KVSNKALPAPIEKTISKA 349
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 27.2 bits (60), Expect = 1.6
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK 27
++ V + C++ T+ WY+
Sbjct: 34 VISKSGTSVKIECRSLDFQATTMFWYR 60
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB:
1bwm_A
Length = 238
Score = 27.0 bits (60), Expect = 1.8
Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 16/92 (17%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY-----KDGELV-------ETSKSDAKSQRVIL-P 47
V VTL+C + WY L+ T K D P
Sbjct: 10 KVAVTGGKVTLSCNQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP 68
Query: 48 TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA 79
+ F L + VY+C A +G
Sbjct: 69 SQENFSLILELATPS-QTSVYFC-ASGDLGQT 98
Score = 26.3 bits (58), Expect = 3.2
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK 27
+ V + E LNC E WY+
Sbjct: 137 LTVWEGETAILNCSYENSAFDYFPWYQ 163
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo
sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E
3mfg_B 2ij0_E
Length = 246
Score = 26.7 bits (59), Expect = 1.9
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK 27
++ V + C++ T+ WY+
Sbjct: 11 VISKSGTSVKIECRSLDFQATTMFWYR 37
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 26.8 bits (58), Expect = 1.9
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
T C A G+ + G V + K +V + VV+ K +D G Y
Sbjct: 183 TFQCSAIGRTVAGDRLWLQGIDVRDAPL--KEIKVTSSRRFIASFNVVNTTK-RDAGKYR 239
Query: 70 CLARNSVGTAVSRNATLQV 88
C+ R G +S A L V
Sbjct: 240 CMIRTEGGVGISNYAELVV 258
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 26.6 bits (59), Expect = 1.9
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 6 NEPVTLNCKAEG--KPEPTIEWYKDGELVE 33
+P TL C + P + W +GELV
Sbjct: 100 GQPNTLICHIDKFFPPVLNVTWLCNGELVT 129
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 26.1 bits (58), Expect = 2.2
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 1 MVVAKNEPVTLNCKAE-GKPEPTIEWYK 27
+ V + VT++C E + WYK
Sbjct: 10 ISVMEKTTVTMDCVYETQDSSYFLFWYK 37
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E*
3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 26.5 bits (58), Expect = 2.6
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 16/84 (19%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDG---ELVETSKSDAKSQR---------VIL 46
++ + VTLNC WY G E + + ++ V
Sbjct: 12 QIIDMGQMVTLNCDPVS-NHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVER 70
Query: 47 PTGSLFFLRVVHGKKEQDGGVYWC 70
P GS F L++ E D VY+C
Sbjct: 71 PDGSYFTLKIQPTALE-DSAVYFC 93
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 26.2 bits (57), Expect = 3.2
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 16/84 (19%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWY--KDGE----------LVETSKSDAKSQR--VIL 46
V K + V L C + WY G+ S + R +
Sbjct: 36 KVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVR 94
Query: 47 PTGSLFFLRVVHGKKEQDGGVYWC 70
P GS+ L+ + + D VY C
Sbjct: 95 PEGSVSTLK-IQRTERGDSAVYLC 117
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 25.9 bits (57), Expect = 3.9
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 6 NEPVTLNCKAEG--KPEPTIEWYKDGELVET 34
+P TL C + P I W ++ + V
Sbjct: 104 GQPNTLICFVDNIFPPVINITWLRNSKSVTD 134
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 25.8 bits (56), Expect = 4.1
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 8/68 (11%)
Query: 6 NEPVTLNCKAEG--KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK-KE 62
+P TL C P T+ W VE + L F +
Sbjct: 114 GKPNTLVCFVSNLFPPMLTVNWQHHSVPVEGF-----GPTFVSAVDGLSFQAFSYLNFTP 168
Query: 63 QDGGVYWC 70
+ ++ C
Sbjct: 169 EPSDIFSC 176
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin;
immune system/receptor, immune system/receptor/complex,
TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A
2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D
3qeq_D
Length = 215
Score = 25.7 bits (56), Expect = 4.4
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 7 EPVTLNCKAEGKPEPTIEWYK---DGELV-----ETSKSDAKSQRVILP---TGSLFFLR 55
E +T+ C + +++WY+ V T K +R+ L
Sbjct: 17 ENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLH 75
Query: 56 VVHGKKEQDGGVYWCLARNSVG 77
+ + D G+Y C S G
Sbjct: 76 ITAAQPG-DTGLYLCAGAGSQG 96
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 25.6 bits (56), Expect = 5.6
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 13/81 (16%)
Query: 2 VVAKNEPVTLNCKAEG----KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLF----F 53
V+ + + C P+ I W+ + V T+++ + S
Sbjct: 251 VLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHRED----YNSTLRVVSA 306
Query: 54 LRVVHGKKEQDGGVYWCLARN 74
L + H G + C N
Sbjct: 307 LPIQHQDWM-SGKEFKCKVNN 326
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 6.5
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 28/62 (45%)
Query: 50 SLFFLR-----VVHG-------------------KKEQDGGVYWCLARNSVGTAVSRNAT 85
+L LR ++ G + + D ++W ++ S
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL----NLKNCNSPETV 198
Query: 86 LQ 87
L+
Sbjct: 199 LE 200
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor
system; 2.75A {Mus musculus}
Length = 256
Score = 25.1 bits (55), Expect = 6.7
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYK 27
V++ + L CK P + WY
Sbjct: 14 TVSEGASLQLRCKYSYSATPYLFWYV 39
Score = 25.1 bits (55), Expect = 8.6
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 1 MVVAKNEPVTLNCKAEGKPEPTIEWYK 27
V E VTL+C+ + WY+
Sbjct: 147 KVTVTGENVTLSCRQTNS-HNYMYWYR 172
>2jks_A BSR4, bradyzoite surface antigen BSR4; immune system; 1.90A
{Toxoplasma gondii}
Length = 315
Score = 25.1 bits (54), Expect = 6.9
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 9 VTLNCKAEGKPEPTI--EWYKDGELVETSKSDAKSQRVILPT 48
+T+NC ++G +PT E Y + + ++ I P
Sbjct: 198 LTINCGSDGSLQPTTYAEEYCVADSKDVNRCSTTRFVEIFPK 239
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase;
1.50A {Zobellia galactanivorans}
Length = 363
Score = 24.9 bits (53), Expect = 9.0
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 22 TIEWYKDGELVETSKSDAKSQRV 44
+E++ DG++V +DA R+
Sbjct: 232 RLEYFVDGQMVRILDNDAVQTRL 254
>2eui_A Probable acetyltransferase; dimer, structural genomics, PSI,
protein structure initiative; 2.80A {Pseudomonas
aeruginosa PAO1} SCOP: d.108.1.1
Length = 153
Score = 24.7 bits (54), Expect = 9.1
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 89 AVVIFFISFFRFKLSAYLYDLF 110
+ S K L D++
Sbjct: 64 CQLYPSFSSLSLKRVWILNDIY 85
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system;
2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 24.1 bits (53), Expect = 9.8
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 7 EPVTLNCKAEGKPEPTIEWYK 27
+ +T++C P + WY
Sbjct: 16 DFLTIHCNYSASGYPALFWYV 36
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 24.7 bits (53), Expect = 9.9
Identities = 10/87 (11%), Positives = 22/87 (25%), Gaps = 14/87 (16%)
Query: 2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
++ + V + C + ET K + ++ +
Sbjct: 10 ILPRGGSVLVTCSTSCDQPKLLGI-------ETPLP--KKELLLPGNNRKVYELS----N 56
Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
Q+ C + N + L V
Sbjct: 57 VQEDSQPMCYS-NCPDGQSTAKTFLTV 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.404
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,828,035
Number of extensions: 94629
Number of successful extensions: 1124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 721
Number of HSP's successfully gapped: 438
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)