BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8667
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 84/126 (66%), Gaps = 2/126 (1%)
Query: 2 KRIVAAGGWVEFD-RVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWE 60
+RI AGG V D RVNG L LSRA+GD +K N + A EQ+I ++PD+ V PE E
Sbjct: 178 QRIEKAGGRVTLDGRVNGGLNLSRAIGDHGYKMNKSLPAEEQMISALPDIEKITVGPEDE 237
Query: 61 FVIIACDGIWDVMSNEDVVAFVRLKIGE-AMEPEKICEELMTRCLAPDRELCGLGCDNMT 119
F+++ACDGIW+ M++E VV FV+ +I + M+ KICEEL CLAP G GCDNMT
Sbjct: 238 FMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDHCLAPHTRGDGTGCDNMT 297
Query: 120 VVLVCF 125
++V F
Sbjct: 298 AIIVQF 303
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 7/125 (5%)
Query: 2 KRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVV-VEKVTPEWE 60
+RI AGG V RVNG+LA+SRALGDF +K TEQ++ P+V +E+ + +
Sbjct: 173 ERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQ 232
Query: 61 FVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTV 120
F+I+ACDGIWDVM NE++ FVR ++ + EK+C E++ CL DNM+V
Sbjct: 233 FIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR------DNMSV 286
Query: 121 VLVCF 125
+L+CF
Sbjct: 287 ILICF 291
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 7/125 (5%)
Query: 2 KRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVV-VEKVTPEWE 60
+RI AGG V RVNG+LA+SRALGDF +K TEQ++ P+V +E+ + +
Sbjct: 173 ERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQ 232
Query: 61 FVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTV 120
F+I+ACDGIWDVM NE++ FVR ++ + EK+C E++ CL DNM+V
Sbjct: 233 FIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR------DNMSV 286
Query: 121 VLVCF 125
+L+CF
Sbjct: 287 ILICF 291
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 2 KRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEF 61
+RI AGG V RVNG+LA+SRALGD+ +K TEQ++ P+V E EF
Sbjct: 180 ERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEF 239
Query: 62 VIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVV 121
+I+A DGIWDVMSNE++ +V+ ++ + + E +C ++ CL DNM++V
Sbjct: 240 IILAXDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSR------DNMSIV 293
Query: 122 LVCF 125
LVCF
Sbjct: 294 LVCF 297
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 3 RIVAAGGWVE-FD--RVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
RI AGG VE FD RV+G LALSRA GD FK N + EQ +I++PD V +
Sbjct: 211 RIEKAGGSVETFDVPRVDGVLALSRAFGDSDFKXNPNLPPEEQKVIAVPD-VRQFYALSS 269
Query: 60 EFVIIACDGIWDVMSNEDVVAFVR-LKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNM 118
+ +++ACDG+++ + A+VR L + E + EE+ R D DN+
Sbjct: 270 DLLLLACDGVYEPSGXD--WAYVRDLTVAEXQRSKGDLEEVAARVX--DYAYDXNSQDNI 325
Query: 119 TVVLVCF 125
+V LV F
Sbjct: 326 SVXLVAF 332
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
Length = 324
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 57/138 (41%), Gaps = 21/138 (15%)
Query: 3 RIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIIS---------------M 47
RI GG VE+ + N R GDF+F R +R Q+ S
Sbjct: 189 RIXRNGGSVEYLHNHNNKPFIRG-GDFSF-RKSRGEQPXQLQYSRAFGGKDLKXYGLSNQ 246
Query: 48 PDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPD 107
PDV V +VTP+ I+A DG+WDV S V E P + L+ LA +
Sbjct: 247 PDVRVVRVTPQHRVXILATDGLWDVXSAAQAVEIAXQARQEGRNP---AQALVEXTLA-E 302
Query: 108 RELCGLGCDNMTVVLVCF 125
++ DN+T V F
Sbjct: 303 QQSRNQSADNITAXTVFF 320
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 68/140 (48%), Gaps = 28/140 (20%)
Query: 3 RIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
RI AAGG V RV G LA+SR++GD K + +I P+V + E
Sbjct: 180 RIEAAGGKVIRWNGARVFGVLAMSRSIGDRYLKPS---------VIPDPEVTSVRRVKED 230
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKI----------GEAMEP-EKICEELMTRCLAPDR 108
+ +I+A DG+WDVM+NE+V R +I GEA+ P EK E ++
Sbjct: 231 DCLILASDGLWDVMTNEEVCDLARKRILLWHKKNAMAGEALLPAEKRGEGKDPAAMSAAE 290
Query: 109 ELCGLGC-----DNMTVVLV 123
L + DN++VV+V
Sbjct: 291 YLSKMALQKGSKDNISVVVV 310
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 3 RIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
RI AGG V + RV G LA+SR++GD K +I P+V + E
Sbjct: 206 RIENAGGKVIQWQGARVFGVLAMSRSIGDRYLK---------PYVIPEPEVTFMPRSRED 256
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKI 86
E +I+A DG+WDVM+N++V R +I
Sbjct: 257 ECLILASDGLWDVMNNQEVCEIARRRI 283
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 3 RIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
RI AGG V + RV G LA+SR++GD K +I P+V + E
Sbjct: 200 RIENAGGKVIQWQGARVFGVLAMSRSIGDRYLK---------PYVIPEPEVTFMPRSRED 250
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKI 86
E +I+A DG+WDVM+N++V R +I
Sbjct: 251 ECLILASDGLWDVMNNQEVCEIARRRI 277
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 3 RIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
RI AGG V + RV G LA+SR++GD K +I P+V + E
Sbjct: 204 RIENAGGKVIQWQGARVFGVLAMSRSIGDRYLK---------PYVIPEPEVTFMPRSRED 254
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKI 86
E +I+A DG+WDVM+N++V R +I
Sbjct: 255 ECLILASDGLWDVMNNQEVCEIARRRI 281
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 3 RIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
RI AGG V + RV G LA+SR++GD K +I P+V + E
Sbjct: 213 RIENAGGKVIQWQGARVFGVLAMSRSIGDRYLK---------PYVIPEPEVTFMPRSRED 263
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKI 86
E +I+A DG+WDVM+N++V R +I
Sbjct: 264 ECLILASDGLWDVMNNQEVCEIARRRI 290
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 3 RIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
RI AGG V + RV G LA+SR++GD K +I P+V + E
Sbjct: 203 RIENAGGKVIQWQGARVFGVLAMSRSIGDRYLK---------PYVIPEPEVTFMPRSRED 253
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKI 86
E +I+A DG+WDVM+N++V R +I
Sbjct: 254 ECLILASDGLWDVMNNQEVCEIARRRI 280
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 3 RIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
RI AGG V + RV G LA+SR++GD K +I P+V + E
Sbjct: 189 RIENAGGKVIQWQGARVFGVLAMSRSIGDRYLK---------PYVIPEPEVTFMPRSRED 239
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKI 86
E +I+A DG+WDVM+N++V R +I
Sbjct: 240 ECLILASDGLWDVMNNQEVCEIARRRI 266
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 3 RIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
RI AAGG V RV G LA+SR++GD K + II P+V K E
Sbjct: 186 RIEAAGGKVIQWNGARVFGVLAMSRSIGDRYLKPS---------IIPDPEVTAVKRVKED 236
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKI 86
+ +I+A DG+WDVM++E+ R +I
Sbjct: 237 DCLILASDGVWDVMTDEEACEMARKRI 263
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 3 RIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
RI AAGG V RV G LA+SR++GD K + II P+V K E
Sbjct: 174 RIEAAGGKVIQWNGARVFGVLAMSRSIGDRYLKPS---------IIPDPEVTAVKRVKED 224
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKI 86
+ +I+A DG+WDVM++E+ R +I
Sbjct: 225 DCLILASDGVWDVMTDEEACEMARKRI 251
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 3 RIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
RI AAGG V RV G LA+SR++GD K + II P+V K E
Sbjct: 171 RIEAAGGKVIQWNGARVFGVLAMSRSIGDRYLKPS---------IIPDPEVTAVKRVKED 221
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKI 86
+ +I+A DG+WDVM++E+ R +I
Sbjct: 222 DCLILASDGVWDVMTDEEACEMARKRI 248
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 24/96 (25%)
Query: 11 VEFDRVNGNLALSRALGDFTFK----RNTRV--SATEQI------------------IIS 46
V+ DR+ G L RA GD FK RV S +Q+ + +
Sbjct: 267 VKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTA 326
Query: 47 MPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFV 82
P+V ++ P+ +F+++A DG+W+ M +DVV V
Sbjct: 327 EPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIV 362
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 24/96 (25%)
Query: 11 VEFDRVNGNLALSRALGDFTFK----RNTRV--SATEQI------------------IIS 46
V+ DR+ G L RA GD FK RV S +Q+ + +
Sbjct: 267 VKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYYTPPYLTA 326
Query: 47 MPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFV 82
P+V ++ P+ +F+++A DG+W+ M +DVV V
Sbjct: 327 EPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIV 362
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 2 KRIVAAGGWVEFD-----RVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVT 56
+RI GG+V ++ VNG LA++R++GD K + ++ E I +
Sbjct: 150 ERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHA------ 203
Query: 57 PEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCD 116
+ F+++ DGI +++++++ FV + +P + + + + E D
Sbjct: 204 -DDSFLVLTTDGINFMVNSQEICDFV----NQCHDPNEAAHAVTEQAIQYGTE------D 252
Query: 117 NMTVVLVCF 125
N T V+V F
Sbjct: 253 NSTAVVVPF 261
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 2 KRIVAAGGWVEFD-----RVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVT 56
+RI GG+V ++ VNG LA++R++GD K + ++ E I +
Sbjct: 264 ERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHA------ 317
Query: 57 PEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCD 116
+ F+++ DGI +++++++ FV + +P + + + + E D
Sbjct: 318 -DDSFLVLTTDGINFMVNSQEICDFV----NQCHDPNEAAHAVTEQAIQYGTE------D 366
Query: 117 NMTVVLVCF 125
N T V+V F
Sbjct: 367 NSTAVVVPF 375
>pdb|3D8K|A Chain A, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|B Chain B, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|C Chain C, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|D Chain D, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
Length = 377
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 3 RIVAAGGWVEFDRVNGNLAL------SRALGDFTFKRNTRVSATEQIIISMPDV 50
R+ AAGG F VNG L L +RA G F FK+ + + ++ ++PDV
Sbjct: 203 RVQAAGGV--FTTVNGELLLGGVVPXTRAFGSFDFKKGGQGKLQQDLVSAVPDV 254
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 32.7 bits (73), Expect = 0.10, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 71 DVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLG 114
D +NE +F+R K+ E +E + +LM + L R LC G
Sbjct: 325 DEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSG 368
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 32.3 bits (72), Expect = 0.11, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 71 DVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLG 114
D +NE +F+R K+ E +E + +LM + L R LC G
Sbjct: 292 DEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSG 335
>pdb|1P4E|C Chain C, Flpe W330f Mutant-Dna Holliday Junction Complex
pdb|1P4E|D Chain D, Flpe W330f Mutant-Dna Holliday Junction Complex
Length = 429
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 49 DVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEK 94
+ ++K+ P WEF II +G D+V+ ++L+ + E +K
Sbjct: 89 EASLKKLIPAWEFTIIPYNGQKHQSDITDIVSSLQLQFESSEEADK 134
>pdb|1P4E|A Chain A, Flpe W330f Mutant-Dna Holliday Junction Complex
pdb|1P4E|B Chain B, Flpe W330f Mutant-Dna Holliday Junction Complex
Length = 429
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 49 DVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEK 94
+ ++K+ P WEF II +G D+V+ ++L+ + E +K
Sbjct: 89 EASLKKLIPAWEFTIIPYNGQKHQSDITDIVSSLQLQFESSEEADK 134
>pdb|1M6X|A Chain A, Flpe-Holliday Junction Complex
pdb|1M6X|B Chain B, Flpe-Holliday Junction Complex
Length = 423
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 52 VEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEK 94
++K+ P WEF II +G D+V+ ++L+ + E +K
Sbjct: 93 LKKLIPAWEFTIIPYNGQKHQSDITDIVSSLQLQFESSEEADK 135
>pdb|1M6X|C Chain C, Flpe-Holliday Junction Complex
pdb|1M6X|D Chain D, Flpe-Holliday Junction Complex
Length = 423
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 49 DVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEK 94
+ ++K+ P WEF II +G D+V+ ++L+ + E +K
Sbjct: 90 EASLKKLIPAWEFTIIPYNGQKHQSDITDIVSSLQLQFESSEEADK 135
>pdb|1FLO|A Chain A, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|B Chain B, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|C Chain C, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|D Chain D, Flp Recombinase-Holliday Junction Complex I
Length = 422
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 52 VEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEK 94
++K+ P WEF II G D+V+ ++L+ + E +K
Sbjct: 92 LKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADK 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,888,829
Number of Sequences: 62578
Number of extensions: 178489
Number of successful extensions: 388
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 31
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)