Query psy8667
Match_columns 163
No_of_seqs 180 out of 1119
Neff 7.9
Searched_HMMs 46136
Date Sat Aug 17 00:40:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0699|consensus 100.0 8.3E-33 1.8E-37 224.5 9.5 126 2-127 378-504 (542)
2 KOG0697|consensus 100.0 2.5E-32 5.3E-37 215.2 10.8 125 1-131 172-296 (379)
3 PLN03145 Protein phosphatase 2 100.0 1.5E-29 3.2E-34 210.3 12.6 137 2-146 214-350 (365)
4 KOG0698|consensus 100.0 9.4E-29 2E-33 203.4 12.9 116 1-130 189-308 (330)
5 PTZ00224 protein phosphatase 2 99.9 9.4E-27 2E-31 194.4 13.4 127 1-134 152-279 (381)
6 PF00481 PP2C: Protein phospha 99.9 4.8E-27 1E-31 186.3 4.0 107 1-118 147-254 (254)
7 KOG0700|consensus 99.8 2.8E-21 6E-26 159.2 6.9 96 14-109 273-380 (390)
8 cd00143 PP2Cc Serine/threonine 99.8 4.5E-18 9.7E-23 133.0 11.7 108 2-125 147-254 (254)
9 smart00332 PP2Cc Serine/threon 99.8 6.7E-18 1.4E-22 132.5 11.6 106 2-123 150-255 (255)
10 COG0631 PTC1 Serine/threonine 99.7 3.6E-18 7.8E-23 136.6 6.9 89 13-129 167-255 (262)
11 KOG0618|consensus 99.6 9.3E-16 2E-20 137.2 10.6 110 1-129 665-775 (1081)
12 KOG1323|consensus 99.6 1.4E-15 3.1E-20 123.3 8.9 115 14-128 359-489 (493)
13 PRK14559 putative protein seri 99.5 6.4E-14 1.4E-18 123.8 11.2 93 18-129 545-638 (645)
14 KOG1379|consensus 98.9 5.3E-09 1.2E-13 84.6 9.1 75 49-124 237-329 (330)
15 TIGR02865 spore_II_E stage II 98.5 3.7E-07 8.1E-12 82.9 7.9 71 49-125 688-763 (764)
16 PF07228 SpoIIE: Stage II spor 98.3 2.4E-06 5.2E-11 64.4 7.4 74 48-126 112-193 (193)
17 smart00331 PP2C_SIG Sigma fact 98.1 1.2E-05 2.5E-10 60.8 6.9 54 48-104 139-192 (193)
18 COG2208 RsbU Serine phosphatas 97.7 0.00023 5.1E-09 59.4 8.5 79 43-126 277-366 (367)
19 PF13672 PP2C_2: Protein phosp 96.4 0.0023 5.1E-08 48.8 2.4 37 49-86 158-195 (212)
20 COG3700 AphA Acid phosphatase 76.4 5.2 0.00011 30.8 4.3 52 58-109 70-132 (237)
21 PF06972 DUF1296: Protein of u 69.6 9.5 0.00021 23.6 3.5 27 72-101 18-44 (60)
22 PF12095 DUF3571: Protein of u 65.9 27 0.00059 23.2 5.4 52 57-108 8-69 (83)
23 PRK15322 invasion protein OrgB 55.2 42 0.00091 26.1 5.5 47 59-105 147-194 (210)
24 PF09436 DUF2016: Domain of un 53.3 9.7 0.00021 24.6 1.6 20 55-74 23-42 (72)
25 PRK06369 nac nascent polypepti 50.6 87 0.0019 22.1 7.4 55 42-99 37-98 (115)
26 PF05402 PqqD: Coenzyme PQQ sy 45.1 64 0.0014 19.6 4.5 28 75-102 15-42 (68)
27 cd00534 DHNA_DHNTPE Dihydroneo 44.8 80 0.0017 21.7 5.4 57 64-125 42-100 (118)
28 PRK03072 heat shock protein Ht 37.6 54 0.0012 26.6 4.0 44 43-86 91-135 (288)
29 PRK05457 heat shock protein Ht 36.6 80 0.0017 25.6 4.9 28 60-87 116-143 (284)
30 PF14014 DUF4230: Protein of u 34.5 1.1E+02 0.0023 21.9 4.9 41 45-85 75-115 (157)
31 PRK02391 heat shock protein Ht 32.4 74 0.0016 26.0 4.1 26 61-86 116-141 (296)
32 TIGR00525 folB dihydroneopteri 30.7 1.8E+02 0.0038 19.9 6.0 57 64-125 41-99 (116)
33 TIGR03859 PQQ_PqqD coenzyme PQ 29.9 1.6E+02 0.0034 19.0 5.2 42 58-102 15-56 (81)
34 PF08069 Ribosomal_S13_N: Ribo 29.7 77 0.0017 19.7 2.9 32 70-101 25-56 (60)
35 PF13649 Methyltransf_25: Meth 29.6 1E+02 0.0022 20.1 3.8 24 62-85 70-93 (101)
36 COG1539 FolB Dihydroneopterin 29.4 2E+02 0.0044 20.2 6.7 58 64-129 43-102 (121)
37 PF02152 FolB: Dihydroneopteri 28.8 1.9E+02 0.004 19.5 5.2 55 66-125 41-97 (113)
38 PRK04897 heat shock protein Ht 28.2 93 0.002 25.3 4.0 27 61-87 120-146 (298)
39 COG1973 HypE Hydrogenase matur 27.9 8.1 0.00018 32.5 -2.2 52 23-76 83-138 (449)
40 PRK01345 heat shock protein Ht 27.1 1E+02 0.0022 25.4 4.1 26 61-86 107-132 (317)
41 PRK03982 heat shock protein Ht 26.8 1.2E+02 0.0026 24.4 4.4 26 61-86 108-133 (288)
42 PRK11593 folB bifunctional dih 25.9 2.2E+02 0.0049 19.5 6.2 44 64-107 42-87 (119)
43 TIGR03884 sel_bind_Methan sele 25.8 1.8E+02 0.004 18.8 4.2 30 90-128 25-54 (74)
44 TIGR00264 alpha-NAC-related pr 25.3 2.5E+02 0.0054 19.8 7.4 56 41-99 40-100 (116)
45 smart00331 PP2C_SIG Sigma fact 23.4 3E+02 0.0064 20.0 8.7 65 57-126 27-95 (193)
46 PHA02591 hypothetical protein; 22.6 1.4E+02 0.0031 19.6 3.2 26 74-99 44-69 (83)
47 PRK02870 heat shock protein Ht 22.4 1.3E+02 0.0028 25.1 3.8 26 61-86 156-181 (336)
48 PRK03001 M48 family peptidase; 20.4 1.7E+02 0.0037 23.4 4.1 26 62-87 108-133 (283)
49 COG2168 DsrH Uncharacterized c 20.2 90 0.002 21.3 2.0 28 56-84 23-50 (96)
No 1
>KOG0699|consensus
Probab=99.98 E-value=8.3e-33 Score=224.53 Aligned_cols=126 Identities=48% Similarity=0.840 Sum_probs=121.5
Q ss_pred hhhhhCCCEEE-cCcccceeeccccccccccccCCCCCCCCCcEEecceEEEEEcCCCCeEEEEecCccccccCHHHHHH
Q psy8667 2 KRIVAAGGWVE-FDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVA 80 (163)
Q Consensus 2 ~RI~~~GG~v~-~~rv~g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~~ 80 (163)
.||.++||+|. .|||||+|++||||||+.||++..+++++|+|++.|+|....+++.++|+|++|||+|++|+.+++++
T Consensus 378 ~RI~~AGG~vtlDGRVNGGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVd 457 (542)
T KOG0699|consen 378 NRIHAAGGQVTLDGRVNGGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVD 457 (542)
T ss_pred HHHHhcCCeEeecceecCccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHH
Confidence 59999999998 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEecC
Q psy8667 81 FVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCFLH 127 (163)
Q Consensus 81 ~v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l~~ 127 (163)
+|+..+.++..+..+|+.|++.|++......|+++||||+|++.|+.
T Consensus 458 Fvr~~l~~n~~ls~iceeL~D~CLAp~T~GDGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 458 FVRDLLAKNSSLSEICEELCDACLAPSTDGDGTGCDNMTVIITTFKR 504 (542)
T ss_pred HHHHHHhcCchHHHHHHHHHHhhcCCCCCCCCcCCCcceEEEEEecc
Confidence 99999999999999999999999998887788999999999999973
No 2
>KOG0697|consensus
Probab=99.98 E-value=2.5e-32 Score=215.23 Aligned_cols=125 Identities=42% Similarity=0.769 Sum_probs=119.3
Q ss_pred ChhhhhCCCEEEcCcccceeeccccccccccccCCCCCCCCCcEEecceEEEEEcCCCCeEEEEecCccccccCHHHHHH
Q psy8667 1 MKRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVA 80 (163)
Q Consensus 1 ~~RI~~~GG~v~~~rv~g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~~ 80 (163)
++||+.|||.|.-.||||.|++|||||||.||......+.+|+|+++|+|......+.|+||||||||+||+|+++|+.+
T Consensus 172 keRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelce 251 (379)
T KOG0697|consen 172 KERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCE 251 (379)
T ss_pred HHHHhcCCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHH
Confidence 48999999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEecCCCCc
Q psy8667 81 FVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCFLHGKPY 131 (163)
Q Consensus 81 ~v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l~~~~~~ 131 (163)
+++..+....++..+|..+++.|+.+++ +||||+++|.|...+..
T Consensus 252 fv~sRl~Vt~dL~~vcn~VvDtCLhKGS------RDNMsivlvcfp~APkv 296 (379)
T KOG0697|consen 252 FVKSRLEVTSDLEEVCNDVVDTCLHKGS------RDNMSIVLVCFPGAPKV 296 (379)
T ss_pred HHHhhheecccHHHHHHHHHHHHHhccC------ccCceEEEEecCCCCCC
Confidence 9999998888999999999999999998 99999999999876654
No 3
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.96 E-value=1.5e-29 Score=210.34 Aligned_cols=137 Identities=33% Similarity=0.569 Sum_probs=120.1
Q ss_pred hhhhhCCCEEEcCcccceeeccccccccccccCCCCCCCCCcEEecceEEEEEcCCCCeEEEEecCccccccCHHHHHHH
Q psy8667 2 KRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAF 81 (163)
Q Consensus 2 ~RI~~~GG~v~~~rv~g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~~~ 81 (163)
+||+++||+|..+|++|.+++||||||+.+|..+.. ..+.++++|+|..+.++++|.|||||||||||+|++++++++
T Consensus 214 ~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~~--~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~ 291 (365)
T PLN03145 214 KRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGS--DGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDF 291 (365)
T ss_pred HHHHHcCCceecceECCccccccccccccccccccc--cCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHH
Confidence 699999999999999999999999999999854311 223478999999999998899999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEecCCCCccccccccCCCccCCC
Q psy8667 82 VRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCFLHGKPYTSLVTKCGGSTTHAT 146 (163)
Q Consensus 82 v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l~~~~~~~~~~~~~~~~~~~~~ 146 (163)
+.+.+.+..+++.+|+.|++.|+.+++ .||||||||+|+..+++.....++...++.+.
T Consensus 292 i~~~l~~~~~p~~aa~~Lv~~Al~rgs------~DNITvIVV~l~~~~~~~~~~~~~~~~~~~~~ 350 (365)
T PLN03145 292 ARRRLQEHNDPVMCSKELVDEALKRKS------GDNLAVVVVCFQSQPPPNLVAPRPRVQRSISA 350 (365)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCC------CCCEEEEEEEeecCCCccccccccccccccCH
Confidence 988777767899999999999999997 89999999999988888777777777765543
No 4
>KOG0698|consensus
Probab=99.96 E-value=9.4e-29 Score=203.43 Aligned_cols=116 Identities=41% Similarity=0.586 Sum_probs=106.0
Q ss_pred ChhhhhCCCEEEc----CcccceeeccccccccccccCCCCCCCCCcEEecceEEEEEcCCCCeEEEEecCccccccCHH
Q psy8667 1 MKRIVAAGGWVEF----DRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNE 76 (163)
Q Consensus 1 ~~RI~~~GG~v~~----~rv~g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ 76 (163)
++||+++||+|.. +||+|.|+|||||||+.+|. ++|+++|++....++..|+||||+||||||+|+++
T Consensus 189 ~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~--------~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~q 260 (330)
T KOG0698|consen 189 RERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKS--------QGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQ 260 (330)
T ss_pred HHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcC--------CcEecCCceEEEEcCCCCcEEEEeCCchhcccChH
Confidence 4799999999995 49999999999999999997 45999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEecCCCC
Q psy8667 77 DVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCFLHGKP 130 (163)
Q Consensus 77 ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l~~~~~ 130 (163)
|++++++..+.....+..++..|.+.|+.+++ .||||||||.|...+.
T Consensus 261 eav~~V~~~~~~~~~~~~a~~~l~~~a~~~~s------~DnitvvvV~l~~~~~ 308 (330)
T KOG0698|consen 261 EAVDLVRDELASISSPLAAAKLLATEALSRGS------KDNITVVVVRLKSSPK 308 (330)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhcCC------CCCeEEEEEEecCccc
Confidence 99999999754447899999999999999998 8999999999986643
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.94 E-value=9.4e-27 Score=194.37 Aligned_cols=127 Identities=35% Similarity=0.588 Sum_probs=111.3
Q ss_pred ChhhhhCCCEEEcCcccceeeccccccccccccCCCCCCCCCcEEecceEEEEEcCCCCeEEEEecCcccc-ccCHHHHH
Q psy8667 1 MKRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWD-VMSNEDVV 79 (163)
Q Consensus 1 ~~RI~~~GG~v~~~rv~g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d-~ls~~ei~ 79 (163)
++||+++||++..+|++|.+++||||||+.||..+...+.++.|+++|+|..+.+.++ +||||||||||| +++++++.
T Consensus 152 ~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~-D~llLaSDGL~d~~ls~eEi~ 230 (381)
T PTZ00224 152 RQRIEACGGRVVSNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSN-DFIILACDGVFEGNFSNEEVV 230 (381)
T ss_pred HhHHHHccCEeccccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCC-CEEEEECCCcCcCccCHHHHH
Confidence 3699999999999999999999999999999987755555677899999999988755 599999999999 89999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEecCCCCcccc
Q psy8667 80 AFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCFLHGKPYTSL 134 (163)
Q Consensus 80 ~~v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l~~~~~~~~~ 134 (163)
+++.+.+....+++.+|+.|++.|+.+++ .||||||||+|...+....+
T Consensus 231 ~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs------~DNITvIvV~~~~~~~~~~~ 279 (381)
T PTZ00224 231 AFVKEQLETCDDLAVVAGRVCDEAIRRGS------KDNISCLIVQLKDGASYAKL 279 (381)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCC------CCCEEEEEEEeeCCCChhhh
Confidence 99987665557899999999999999998 99999999999876554443
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.93 E-value=4.8e-27 Score=186.34 Aligned_cols=107 Identities=42% Similarity=0.696 Sum_probs=91.4
Q ss_pred ChhhhhCCCEEE-cCcccceeeccccccccccccCCCCCCCCCcEEecceEEEEEcCCCCeEEEEecCccccccCHHHHH
Q psy8667 1 MKRIVAAGGWVE-FDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVV 79 (163)
Q Consensus 1 ~~RI~~~GG~v~-~~rv~g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~ 79 (163)
++||+++||.|. .+|++|.|++||||||+.+|.+. +++|+++|+|..+.+.++|.|||||||||||+|+++|++
T Consensus 147 ~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~-----~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~ 221 (254)
T PF00481_consen 147 RERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPG-----KPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIV 221 (254)
T ss_dssp HHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCT-----SSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHH
T ss_pred cceeeccccccccchhhhhccccccccccccccccc-----cceeeeecccccccccccceEEEEEcccccccCCHHHHH
Confidence 379999999999 79999999999999999999743 346999999999999988889999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCc
Q psy8667 80 AFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNM 118 (163)
Q Consensus 80 ~~v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNi 118 (163)
+++.+....+..|+.+|+.|++.|+++++ .|||
T Consensus 222 ~~v~~~~~~~~~~~~~a~~L~~~A~~~gs------~DNi 254 (254)
T PF00481_consen 222 DIVRESLNSGRSPQEAAEKLVDEAIARGS------KDNI 254 (254)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHTTH------HSHE
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCC------CCCC
Confidence 99999876656799999999999999998 8997
No 7
>KOG0700|consensus
Probab=99.84 E-value=2.8e-21 Score=159.24 Aligned_cols=96 Identities=30% Similarity=0.450 Sum_probs=85.3
Q ss_pred CcccceeeccccccccccccCCCC------------CCCCCcEEecceEEEEEcCCCCeEEEEecCccccccCHHHHHHH
Q psy8667 14 DRVNGNLALSRALGDFTFKRNTRV------------SATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAF 81 (163)
Q Consensus 14 ~rv~g~l~~tRalGD~~~K~~~~~------------~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~~~ 81 (163)
+||.|.|.+||||||..||++..+ ..++|+++++|+|.++++.+.|.||||+||||||+|+++|++.+
T Consensus 273 ~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~l 352 (390)
T KOG0700|consen 273 WRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSL 352 (390)
T ss_pred ceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHH
Confidence 599999999999999999999754 46899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q psy8667 82 VRLKIGEAMEPEKICEELMTRCLAPDRE 109 (163)
Q Consensus 82 v~~~~~~~~~~~~~a~~L~~~A~~~~~~ 109 (163)
+..++.....-+.+|+.|+++|+.+.+.
T Consensus 353 V~~~i~~~~pd~~~A~hLIr~aL~~aak 380 (390)
T KOG0700|consen 353 VHEFISGKFPDGNPATHLIRHALGRAAK 380 (390)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHhhhhh
Confidence 9997653223356899999999988764
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.77 E-value=4.5e-18 Score=132.99 Aligned_cols=108 Identities=43% Similarity=0.674 Sum_probs=94.1
Q ss_pred hhhhhCCCEEEcCcccceeeccccccccccccCCCCCCCCCcEEecceEEEEEcCCCCeEEEEecCccccccCHHHHHHH
Q psy8667 2 KRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAF 81 (163)
Q Consensus 2 ~RI~~~GG~v~~~rv~g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~~~ 81 (163)
.||.+.+|++...+..+...+||+||+..+| +.+.++|++..+.+.+.+++||||||||||.++++++.++
T Consensus 147 ~~i~~~~~~~~~~~~~~~~~~t~~lG~~~~~---------~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~ 217 (254)
T cd00143 147 ERIEKAGGRVSNGRVPGVLAVTRALGDFDLK---------PGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDI 217 (254)
T ss_pred HHHHHcCCcEEeCEEcCceeeccccCCcccc---------CCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHH
Confidence 5788999988877888899999999999888 4588999999999955566899999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEe
Q psy8667 82 VRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCF 125 (163)
Q Consensus 82 v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l 125 (163)
+...... .+++.+|+.|++.|..+++ .||+|+|+++|
T Consensus 218 ~~~~~~~-~~~~~~a~~l~~~a~~~~~------~Dn~t~i~~~~ 254 (254)
T cd00143 218 VRSELAK-EDLQEAAQELVDLALRRGS------HDNITVVVVRL 254 (254)
T ss_pred HHHHhcc-cCHHHHHHHHHHHHHhCCC------CCCEEEEEEeC
Confidence 9986211 1799999999999999887 89999999875
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.76 E-value=6.7e-18 Score=132.55 Aligned_cols=106 Identities=47% Similarity=0.755 Sum_probs=93.4
Q ss_pred hhhhhCCCEEEcCcccceeeccccccccccccCCCCCCCCCcEEecceEEEEEcCCCCeEEEEecCccccccCHHHHHHH
Q psy8667 2 KRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAF 81 (163)
Q Consensus 2 ~RI~~~GG~v~~~rv~g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~~~ 81 (163)
.||.+.|+.+..++.++...+||++|+..+| +.++++|++....+.+.+++||||||||||+++++++.++
T Consensus 150 ~~i~~~~~~~~~~~~~~~~~lt~~~g~~~~~---------~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~ 220 (255)
T smart00332 150 ARIEAAGGFVINGRVNGVLALSRAIGDFFLK---------PYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDI 220 (255)
T ss_pred HHHHHcCCEEECCeECCeEecccccCCHhhc---------CCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHH
Confidence 5899999999989999999999999998887 5699999999988744566899999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEE
Q psy8667 82 VRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVVLV 123 (163)
Q Consensus 82 v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv 123 (163)
+...... .++..+|+.|++.|..++. .||+|+|++
T Consensus 221 ~~~~~~~-~~~~~~~~~l~~~a~~~~~------~Dn~T~ivv 255 (255)
T smart00332 221 VRKHLSK-SDPEEAAKRLIDLALARGS------KDNITVIVV 255 (255)
T ss_pred HHHHhhc-CCHHHHHHHHHHHHHHcCC------CCCeEEEEC
Confidence 9886321 2699999999999999876 899999985
No 10
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.74 E-value=3.6e-18 Score=136.63 Aligned_cols=89 Identities=35% Similarity=0.644 Sum_probs=78.2
Q ss_pred cCcccceeeccccccccccccCCCCCCCCCcEEecceEEEEEcCCCCeEEEEecCccccccCHHHHHHHHHHHHhcCCCH
Q psy8667 13 FDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEP 92 (163)
Q Consensus 13 ~~rv~g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~~~v~~~~~~~~~~ 92 (163)
.+|.+ ++|||||+..+ ..|++....+.++ +|||||||||||.++++++.+++... .++
T Consensus 167 ~~~~~---~ltralG~~~~--------------~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~~----~~~ 224 (262)
T COG0631 167 HPRRN---ALTRALGDFDL--------------LEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKNS----ETP 224 (262)
T ss_pred Cccch---hhhhhcCCCcc--------------cceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhcC----CCH
Confidence 34544 89999998753 6899999999877 69999999999999999999999974 899
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEecCCC
Q psy8667 93 EKICEELMTRCLAPDRELCGLGCDNMTVVLVCFLHGK 129 (163)
Q Consensus 93 ~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l~~~~ 129 (163)
+.+++.|++.|+.+++ .||||+++|.+....
T Consensus 225 ~~~~~~li~~a~~~g~------~DNiT~ilv~~~~~~ 255 (262)
T COG0631 225 QEAADKLIELALEGGG------PDNITVVLVRLNGEG 255 (262)
T ss_pred HHHHHHHHHHHHhcCC------CCceEEEEEEeeccc
Confidence 9999999999999886 999999999997554
No 11
>KOG0618|consensus
Probab=99.64 E-value=9.3e-16 Score=137.16 Aligned_cols=110 Identities=27% Similarity=0.427 Sum_probs=102.5
Q ss_pred ChhhhhCCCEEE-cCcccceeeccccccccccccCCCCCCCCCcEEecceEEEEEcCCCCeEEEEecCccccccCHHHHH
Q psy8667 1 MKRIVAAGGWVE-FDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVV 79 (163)
Q Consensus 1 ~~RI~~~GG~v~-~~rv~g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~ 79 (163)
.+||+.++|+|. .++++|....||++|.+.+. |.|.+.|+|....+++.|+|||+++-+||++|+-++++
T Consensus 665 ~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~---------P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~ 735 (1081)
T KOG0618|consen 665 YKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLF---------PHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAV 735 (1081)
T ss_pred HHHHHHhcCeecCCCeeeceeeeeeeccccccc---------ccccCCCceeeEecccCceEEEEcchHHhhhccHHHHH
Confidence 379999999999 68999999999999987766 67999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEecCCC
Q psy8667 80 AFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCFLHGK 129 (163)
Q Consensus 80 ~~v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l~~~~ 129 (163)
+.++.. .+|-.+|++|++.|...|+ .||++|+||+|....
T Consensus 736 ~~vRn~----~dpL~AAkKL~d~AqSYgc------~~nv~vlVv~l~~~~ 775 (1081)
T KOG0618|consen 736 DAVRNV----EDPLLAAKKLCDLAQSYGC------AENVSVLVVRLNHLE 775 (1081)
T ss_pred HHHhcC----CchHHHHHHHHHHHHhccc------ccCeeEEEEEeecch
Confidence 999965 8999999999999999999 899999999997553
No 12
>KOG1323|consensus
Probab=99.62 E-value=1.4e-15 Score=123.31 Aligned_cols=115 Identities=25% Similarity=0.400 Sum_probs=92.5
Q ss_pred CcccceeeccccccccccccCCCCCCCCCcEEecceEEEEEcC----CCCeEEEEecCccccccCHHHHHHHHHHHHhcC
Q psy8667 14 DRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVT----PEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEA 89 (163)
Q Consensus 14 ~rv~g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~----~~d~~lvL~SDGl~d~ls~~ei~~~v~~~~~~~ 89 (163)
.|+.+++.+||.|||+.+|-.....+-+|++++.|+|..+++. ..|+.+||+||||||+++++|+..++++.+...
T Consensus 359 aRll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~ 438 (493)
T KOG1323|consen 359 ARLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPST 438 (493)
T ss_pred hhhhhhheeccccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCC
Confidence 3788999999999999999999888999999999999999987 357799999999999999999999999987543
Q ss_pred --CCHH---HHHHHHHHHHHcCCCC-------CCCCCCCCceEEEEEecCC
Q psy8667 90 --MEPE---KICEELMTRCLAPDRE-------LCGLGCDNMTVVLVCFLHG 128 (163)
Q Consensus 90 --~~~~---~~a~~L~~~A~~~~~~-------~~~~~~DNiTvivv~l~~~ 128 (163)
.+|. .+++.|+..|...... ..-.+.|||||.||.|...
T Consensus 439 dp~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 439 DPADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred CCCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccCC
Confidence 2333 5677787766432110 0113479999999999754
No 13
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.53 E-value=6.4e-14 Score=123.78 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=70.3
Q ss_pred ceeeccccccccccccCCCCCCCCCcEEecceEEEEEcCCCCeEEEEecCccccc-cCHHHHHHHHHHHHhcCCCHHHHH
Q psy8667 18 GNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDV-MSNEDVVAFVRLKIGEAMEPEKIC 96 (163)
Q Consensus 18 g~l~~tRalGD~~~K~~~~~~~~~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d~-ls~~ei~~~v~~~~~~~~~~~~~a 96 (163)
+...+|||||+...+ ..+|++..+.+.+ +++||||||||||. +....+.+.+...+....+++++|
T Consensus 545 ~~~~LTrALG~~~~~------------~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa 611 (645)
T PRK14559 545 DAYQLTQALGPRDNS------------AIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGL 611 (645)
T ss_pred ccceeeeccCCCCCC------------cccceEEEEEcCC-CCEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 457899999976543 2478999888875 56899999999994 233333333333333347899999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCceEEEEEecCCC
Q psy8667 97 EELMTRCLAPDRELCGLGCDNMTVVLVCFLHGK 129 (163)
Q Consensus 97 ~~L~~~A~~~~~~~~~~~~DNiTvivv~l~~~~ 129 (163)
+.|++.|+.+++ +||||+|||++...+
T Consensus 612 ~~Li~~Al~~gg------~DNITvIvV~l~~~p 638 (645)
T PRK14559 612 NKLIDLANQYNG------HDNITAILVRLKVRP 638 (645)
T ss_pred HHHHHHHHHcCC------CCcEEEEEEEeccCC
Confidence 999999999987 899999999997543
No 14
>KOG1379|consensus
Probab=98.94 E-value=5.3e-09 Score=84.63 Aligned_cols=75 Identities=20% Similarity=0.330 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCeEEEEecCccccccCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCCC-----------------C
Q psy8667 49 DVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIG-EAMEPEKICEELMTRCLAPDRE-----------------L 110 (163)
Q Consensus 49 ~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~~~v~~~~~-~~~~~~~~a~~L~~~A~~~~~~-----------------~ 110 (163)
+..++.+.++| .|||+||||||.|.+++|.+++..... ...+++..|+.|++.|....-. .
T Consensus 237 d~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~ 315 (330)
T KOG1379|consen 237 DVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKA 315 (330)
T ss_pred ceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCccc
Confidence 45566665555 899999999999999999999998766 4578999999999998764432 1
Q ss_pred CCCCCCCceEEEEE
Q psy8667 111 CGLGCDNMTVVLVC 124 (163)
Q Consensus 111 ~~~~~DNiTvivv~ 124 (163)
+|.+.|+||++|..
T Consensus 316 ~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 316 YGGKPDDITVVLSS 329 (330)
T ss_pred CCCCcccEEEEEec
Confidence 34468999999864
No 15
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.50 E-value=3.7e-07 Score=82.93 Aligned_cols=71 Identities=21% Similarity=0.384 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCeEEEEecCccccccCHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEE
Q psy8667 49 DVVVEKVTPEWEFVIIACDGIWDVMSNED-----VVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVVLV 123 (163)
Q Consensus 49 ~i~~~~~~~~d~~lvL~SDGl~d~ls~~e-----i~~~v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv 123 (163)
+.....+.++ |+|+|+|||+||..++++ +.+++... ...+|+++++.|++.+++... +...||+|++++
T Consensus 688 ~~~~~~L~~G-D~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~--~~~~p~ela~~Il~~a~~~~~---~~~~DD~Tvlvi 761 (764)
T TIGR02865 688 ELVRKKLKNG-DLIVMVSDGVLEGEKEVEGKVLWLVRKLKET--NTNDPEEIAEYLLEKAKELRS---GKIKDDMTVIVA 761 (764)
T ss_pred ceEEEEeCCC-CEEEEECCCCCcCCcccccHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhcC---CCCCCCeEEEEE
Confidence 3344455455 589999999999887533 45555432 236899999999999987543 123899999999
Q ss_pred Ee
Q psy8667 124 CF 125 (163)
Q Consensus 124 ~l 125 (163)
++
T Consensus 762 rv 763 (764)
T TIGR02865 762 KV 763 (764)
T ss_pred Ee
Confidence 86
No 16
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=98.32 E-value=2.4e-06 Score=64.35 Aligned_cols=74 Identities=14% Similarity=0.306 Sum_probs=47.9
Q ss_pred ceEEEEEcC-CCCeEEEEecCccccccCHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCce
Q psy8667 48 PDVVVEKVT-PEWEFVIIACDGIWDVMSNE-------DVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMT 119 (163)
Q Consensus 48 P~i~~~~~~-~~d~~lvL~SDGl~d~ls~~-------ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNiT 119 (163)
.++....+. +.++.|+|+||||+|....+ .+.+++.+. ...+++++++.|++.+...+. +...||+|
T Consensus 112 ~~~~~~~~~l~~gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~---~~~~DD~t 186 (193)
T PF07228_consen 112 IDYQEQEIQLEPGDRLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFGK---GPLRDDIT 186 (193)
T ss_dssp TCEEEEEEE--TTEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHTT---SSTSS-EE
T ss_pred ccccceEEEeccccEEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcC---CCCCCceE
Confidence 334433333 44558999999999998543 334555433 236799999999999887221 12389999
Q ss_pred EEEEEec
Q psy8667 120 VVLVCFL 126 (163)
Q Consensus 120 vivv~l~ 126 (163)
+++++++
T Consensus 187 vl~~~~~ 193 (193)
T PF07228_consen 187 VLVIRRQ 193 (193)
T ss_dssp EEEEEE-
T ss_pred EEEEEEC
Confidence 9999873
No 17
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=98.09 E-value=1.2e-05 Score=60.80 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=42.7
Q ss_pred ceEEEEEcCCCCeEEEEecCccccccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy8667 48 PDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCL 104 (163)
Q Consensus 48 P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~ 104 (163)
+++..+.+.++| .|+|+||||||.++.+++.+++.+.. ..+++++++++++...
T Consensus 139 ~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 139 VDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred ceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 445555565555 79999999999999999999998864 2578999999988764
No 18
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=97.68 E-value=0.00023 Score=59.42 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=54.6
Q ss_pred cEEecceEE----EEEcCCCCeEEEEecCcccc-------ccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q psy8667 43 IIISMPDVV----VEKVTPEWEFVIIACDGIWD-------VMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELC 111 (163)
Q Consensus 43 ~v~~~P~i~----~~~~~~~d~~lvL~SDGl~d-------~ls~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~~~~~~ 111 (163)
++.-.|++. ...+.+ ++.++|.|||+++ .+..+...+.+... .+.+++++++.+++........
T Consensus 277 piG~~~~~~~~~~~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~i~~~l~~~~~~-- 351 (367)
T COG2208 277 PIGLLPDYQYEVASLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRL--LGQPAEEILEAILESLEELQGD-- 351 (367)
T ss_pred eeeecCCccchheeEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhCC--
Confidence 344444443 344445 6689999999999 45667777777753 3468899999988887664431
Q ss_pred CCCCCCceEEEEEec
Q psy8667 112 GLGCDNMTVVLVCFL 126 (163)
Q Consensus 112 ~~~~DNiTvivv~l~ 126 (163)
....||||++++++.
T Consensus 352 ~~~~DDiTll~lk~~ 366 (367)
T COG2208 352 QIQDDDITLLVLKVK 366 (367)
T ss_pred ccccCceEEEEEEec
Confidence 223788999999985
No 19
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=96.38 E-value=0.0023 Score=48.82 Aligned_cols=37 Identities=14% Similarity=0.385 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCeEEEEecCccccccCHHH-HHHHHHHHH
Q psy8667 49 DVVVEKVTPEWEFVIIACDGIWDVMSNED-VVAFVRLKI 86 (163)
Q Consensus 49 ~i~~~~~~~~d~~lvL~SDGl~d~ls~~e-i~~~v~~~~ 86 (163)
++..+.+.+. +.|+|||||||+.+...+ +..++.+.+
T Consensus 158 ~~~~~~~~~~-d~ilL~SDG~~~~l~~~~~~~~~l~~~~ 195 (212)
T PF13672_consen 158 QYGSIPLEEG-DVILLCSDGVWDNLRSYEDLEQFLKDLW 195 (212)
T ss_dssp EEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH-----
T ss_pred eEEEEEcCCC-CEEEEECcCccccCCCHHHHHHHhhhcc
Confidence 3444444444 478999999999998655 666666553
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=76.44 E-value=5.2 Score=30.76 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=37.2
Q ss_pred CCeEEEEecCcccc-----------ccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q psy8667 58 EWEFVIIACDGIWD-----------VMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRE 109 (163)
Q Consensus 58 ~d~~lvL~SDGl~d-----------~ls~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~~~~ 109 (163)
-||.+++.|.|||. +|.++..-+.+.....+..-|.++|.+|++.-.+|+..
T Consensus 70 IDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~ 132 (237)
T COG3700 70 IDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDA 132 (237)
T ss_pred cCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCe
Confidence 35578899999984 45556655555544334456889999999999888864
No 21
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=69.64 E-value=9.5 Score=23.65 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=23.5
Q ss_pred ccCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy8667 72 VMSNEDVVAFVRLKIGEAMEPEKICEELMT 101 (163)
Q Consensus 72 ~ls~~ei~~~v~~~~~~~~~~~~~a~~L~~ 101 (163)
.-|++||...+..+ +++|.+++++|+.
T Consensus 18 ~hse~eIya~L~ec---nMDpnea~qrLL~ 44 (60)
T PF06972_consen 18 CHSEEEIYAMLKEC---NMDPNEAVQRLLS 44 (60)
T ss_pred CCCHHHHHHHHHHh---CCCHHHHHHHHHh
Confidence 36889999999987 5899999999986
No 22
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=65.94 E-value=27 Score=23.16 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=31.9
Q ss_pred CCCeEEEEecCccccccCHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHcCCC
Q psy8667 57 PEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEA----------MEPEKICEELMTRCLAPDR 108 (163)
Q Consensus 57 ~~d~~lvL~SDGl~d~ls~~ei~~~v~~~~~~~----------~~~~~~a~~L~~~A~~~~~ 108 (163)
+.|.|+||-.+===.+++.+|+..-+...+... .+.++.|+.|++.++.-.-
T Consensus 8 ~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~~~LP~dL~~~~s~~~qa~~Lldt~CeLei 69 (83)
T PF12095_consen 8 QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQDDLPPDLAKFSSVEEQAQYLLDTACELEI 69 (83)
T ss_dssp ----EEEEESSS-SEEE-HHHHHHHHHHHHHHTTTS-HHHHH---HHHHHHHHHHH---EEE
T ss_pred ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcCCCCCHHHHhCCCHHHHHHHHHHhceeeec
Confidence 556688887655555899999999988876543 4567899999999977543
No 23
>PRK15322 invasion protein OrgB; Provisional
Probab=55.23 E-value=42 Score=26.11 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=36.8
Q ss_pred CeEEEEecCccccccCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc
Q psy8667 59 WEFVIIACDGIWDVMSNEDVVAFVRLKIGEAME-PEKICEELMTRCLA 105 (163)
Q Consensus 59 d~~lvL~SDGl~d~ls~~ei~~~v~~~~~~~~~-~~~~a~~L~~~A~~ 105 (163)
+.-+|+|||-.--.+|+++.++...+.+....+ ....|..|-+.++.
T Consensus 147 ~~rFV~~~g~qIaEFsPq~~v~~a~~~l~~~~d~~~~~~r~ls~~~l~ 194 (210)
T PRK15322 147 EQRFIMSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAIN 194 (210)
T ss_pred CCceEEEeCCchhccCHHHHHHHHHHHHHhCccchHHHHHHHhHHHHH
Confidence 334689999999999999999998877766555 77788887776654
No 24
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=53.29 E-value=9.7 Score=24.59 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=15.0
Q ss_pred cCCCCeEEEEecCccccccC
Q psy8667 55 VTPEWEFVIIACDGIWDVMS 74 (163)
Q Consensus 55 ~~~~d~~lvL~SDGl~d~ls 74 (163)
+...+.-|++++||+|=.+.
T Consensus 23 l~~~G~Rllva~nGv~lEv~ 42 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVR 42 (72)
T ss_pred cccCCcEEEEecCcEEEEEe
Confidence 34456678999999997664
No 25
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=50.58 E-value=87 Score=22.08 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=39.2
Q ss_pred CcEEecceEEEEEcCCCCeEEEEecCcccc-------ccCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy8667 42 QIIISMPDVVVEKVTPEWEFVIIACDGIWD-------VMSNEDVVAFVRLKIGEAMEPEKICEEL 99 (163)
Q Consensus 42 ~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d-------~ls~~ei~~~v~~~~~~~~~~~~~a~~L 99 (163)
-+|+..|+|........+-|.|++..-.-+ .+++++|.-++.+. +.+.+++-+.|
T Consensus 37 ~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~q~---gvs~~~A~~AL 98 (115)
T PRK06369 37 EIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAEQT---GVSEEEARKAL 98 (115)
T ss_pred EEEEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHHHH---CcCHHHHHHHH
Confidence 569999999988887667788888777754 47788887777665 34555554444
No 26
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=45.07 E-value=64 Score=19.57 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy8667 75 NEDVVAFVRLKIGEAMEPEKICEELMTR 102 (163)
Q Consensus 75 ~~ei~~~v~~~~~~~~~~~~~a~~L~~~ 102 (163)
-.+...+|++.+..+.+.+++++.|.+.
T Consensus 15 Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 15 LNETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp --THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 3444445555443334555555555443
No 27
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=44.85 E-value=80 Score=21.68 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=40.4
Q ss_pred EecCccccccCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEe
Q psy8667 64 IACDGIWDVMSNEDVVAFVRLKIGEA--MEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCF 125 (163)
Q Consensus 64 L~SDGl~d~ls~~ei~~~v~~~~~~~--~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l 125 (163)
-.||-+-+.++...+.+.+....... ..++.+|+.+.+..+.... ....+++-|-+.
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~~~-----~v~~v~v~v~K~ 100 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLEDYP-----KVSAIKVKVEKP 100 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHhCC-----CceEEEEEEECC
Confidence 46788888999999999888766532 4678889999998886632 145555555444
No 28
>PRK03072 heat shock protein HtpX; Provisional
Probab=37.56 E-value=54 Score=26.56 Aligned_cols=44 Identities=7% Similarity=0.133 Sum_probs=29.1
Q ss_pred cEEecceEEEEEcC-CCCeEEEEecCccccccCHHHHHHHHHHHH
Q psy8667 43 IIISMPDVVVEKVT-PEWEFVIIACDGIWDVMSNEDVVAFVRLKI 86 (163)
Q Consensus 43 ~v~~~P~i~~~~~~-~~d~~lvL~SDGl~d~ls~~ei~~~v~~~~ 86 (163)
++...+...-+..- .....+|..|||+.+.++++|+..++...+
T Consensus 91 yv~~~~~~NAFa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHEl 135 (288)
T PRK03072 91 YISPTAAPNAFATGRNPRNAAVCCTEGILQILNERELRGVLGHEL 135 (288)
T ss_pred EEecCCCCceEEecCCCCCcEEEecHHHHHhCCHHHHHHHHHHHH
Confidence 34444444433332 122346788999999999999999997654
No 29
>PRK05457 heat shock protein HtpX; Provisional
Probab=36.64 E-value=80 Score=25.58 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.0
Q ss_pred eEEEEecCccccccCHHHHHHHHHHHHh
Q psy8667 60 EFVIIACDGIWDVMSNEDVVAFVRLKIG 87 (163)
Q Consensus 60 ~~lvL~SDGl~d~ls~~ei~~~v~~~~~ 87 (163)
..+|+.|+|+.+.++++|+..++...+.
T Consensus 116 ~~~V~vt~gLl~~L~~~El~aVlAHElg 143 (284)
T PRK05457 116 NSLVAVSTGLLQNMSRDEVEAVLAHEIS 143 (284)
T ss_pred CeEEEeehHHhhhCCHHHHHHHHHHHHH
Confidence 3578999999999999999999986543
No 30
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=34.47 E-value=1.1e+02 Score=21.92 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=26.1
Q ss_pred EecceEEEEEcCCCCeEEEEecCccccccCHHHHHHHHHHH
Q psy8667 45 ISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLK 85 (163)
Q Consensus 45 ~~~P~i~~~~~~~~d~~lvL~SDGl~d~ls~~ei~~~v~~~ 85 (163)
.+.|.|....++.+.--++-...|+|..++.++..++....
T Consensus 75 LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 115 (157)
T PF14014_consen 75 LPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKEA 115 (157)
T ss_pred CCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHHH
Confidence 34455555566533334556888999998888776666553
No 31
>PRK02391 heat shock protein HtpX; Provisional
Probab=32.37 E-value=74 Score=25.96 Aligned_cols=26 Identities=12% Similarity=0.288 Sum_probs=22.7
Q ss_pred EEEEecCccccccCHHHHHHHHHHHH
Q psy8667 61 FVIIACDGIWDVMSNEDVVAFVRLKI 86 (163)
Q Consensus 61 ~lvL~SDGl~d~ls~~ei~~~v~~~~ 86 (163)
-+|+.|||+.+.++++|+..++...+
T Consensus 116 ~~V~vt~gLl~~L~~~El~aVlaHEl 141 (296)
T PRK02391 116 AVVCVTTGLMRRLDPDELEAVLAHEL 141 (296)
T ss_pred cEEEecHHHHhhCCHHHHHHHHHHHH
Confidence 46789999999999999999997654
No 32
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=30.67 E-value=1.8e+02 Score=19.86 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=39.5
Q ss_pred EecCccccccCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEe
Q psy8667 64 IACDGIWDVMSNEDVVAFVRLKIGEA--MEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCF 125 (163)
Q Consensus 64 L~SDGl~d~ls~~ei~~~v~~~~~~~--~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l 125 (163)
-.+|.+-+.++..++.+.+....... ..++.+|+.+++..+..... .+-+++-+-+.
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~-----v~~v~v~i~Kp 99 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQ-----VQRVKVRVSKP 99 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCC-----ceEEEEEEEeC
Confidence 45788889999999988888766532 46778899999888765321 34455555444
No 33
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=29.93 E-value=1.6e+02 Score=18.98 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=23.8
Q ss_pred CCeEEEEecCccccccCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy8667 58 EWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTR 102 (163)
Q Consensus 58 ~d~~lvL~SDGl~d~ls~~ei~~~v~~~~~~~~~~~~~a~~L~~~ 102 (163)
.+.++|+...| ++.-+++...|++.+....+.+++++.|.+.
T Consensus 15 ~~~~Vl~~p~~---~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~ 56 (81)
T TIGR03859 15 QDCYVLLYPEG---MVKLNDSAGEILELCDGKRSLAEIIQELAQR 56 (81)
T ss_pred cCcEEEEcCCc---eeeeChHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 34456666654 4444566666666555545666666666543
No 34
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=29.72 E-value=77 Score=19.66 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=22.9
Q ss_pred ccccCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy8667 70 WDVMSNEDVVAFVRLKIGEAMEPEKICEELMT 101 (163)
Q Consensus 70 ~d~ls~~ei~~~v~~~~~~~~~~~~~a~~L~~ 101 (163)
|=.++.+|+.+.|.+...+|..|..+--.|.+
T Consensus 25 W~~~~~~eVe~~I~klakkG~tpSqIG~iLRD 56 (60)
T PF08069_consen 25 WLKYSPEEVEELIVKLAKKGLTPSQIGVILRD 56 (60)
T ss_dssp T--S-HHHHHHHHHHHCCTTHCHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHcCCCHHHhhhhhhh
Confidence 66678899999998887778888877666654
No 35
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=29.56 E-value=1e+02 Score=20.07 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=19.9
Q ss_pred EEEecCccccccCHHHHHHHHHHH
Q psy8667 62 VIIACDGIWDVMSNEDVVAFVRLK 85 (163)
Q Consensus 62 lvL~SDGl~d~ls~~ei~~~v~~~ 85 (163)
+|+|+-+++++++++++..++++.
T Consensus 70 ~v~~~~~~~~~~~~~~~~~ll~~~ 93 (101)
T PF13649_consen 70 LVVCSGLSLHHLSPEELEALLRRI 93 (101)
T ss_dssp EEEE-TTGGGGSSHHHHHHHHHHH
T ss_pred EEEEcCCccCCCCHHHHHHHHHHH
Confidence 778888888889999999998875
No 36
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=29.45 E-value=2e+02 Score=20.19 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=43.2
Q ss_pred EecCccccccCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEecCCC
Q psy8667 64 IACDGIWDVMSNEDVVAFVRLKIGEA--MEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCFLHGK 129 (163)
Q Consensus 64 L~SDGl~d~ls~~ei~~~v~~~~~~~--~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l~~~~ 129 (163)
..||=+-|.+.-.++.+.+.+..... .-.+..|+.+.+..+.+ ...++.+=+.+..+.
T Consensus 43 ~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~~LiE~lA~~ia~~l~~~--------~~~v~~~~v~v~KP~ 102 (121)
T COG1539 43 AESDDLADTLNYAEVSELIKEIVEGKRFALIETLAEEIADLLLAR--------FPRVELVEVKVTKPK 102 (121)
T ss_pred cCccchhheecHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHhh--------CCccEEEEEEEECCC
Confidence 56788999999999999998877654 34678888888887765 356677766665443
No 37
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=28.84 E-value=1.9e+02 Score=19.49 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=40.5
Q ss_pred cCccccccCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEe
Q psy8667 66 CDGIWDVMSNEDVVAFVRLKIGEA--MEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCF 125 (163)
Q Consensus 66 SDGl~d~ls~~ei~~~v~~~~~~~--~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l 125 (163)
+|-+-+.++...+.+.+....... ..++.+|+.+++..+..... .+.+++-|-+.
T Consensus 41 ~D~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~~-----v~~v~v~v~Kp 97 (113)
T PF02152_consen 41 SDDLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEFPQ-----VQSVTVKVRKP 97 (113)
T ss_dssp HTTGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTTT-----ESEEEEEEEET
T ss_pred ccccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCCC-----ccEEEEEEECC
Confidence 578889999999999998876643 67899999999999876421 34455544443
No 38
>PRK04897 heat shock protein HtpX; Provisional
Probab=28.23 E-value=93 Score=25.31 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=23.2
Q ss_pred EEEEecCccccccCHHHHHHHHHHHHh
Q psy8667 61 FVIIACDGIWDVMSNEDVVAFVRLKIG 87 (163)
Q Consensus 61 ~lvL~SDGl~d~ls~~ei~~~v~~~~~ 87 (163)
-.|+.|+|+.+.++++|+..++...+.
T Consensus 120 ~~v~vt~gLl~~l~~~El~aVlAHElg 146 (298)
T PRK04897 120 AAVAVTTGLLAIMNREELEGVIGHEIS 146 (298)
T ss_pred cEEEeehHHHhhCCHHHHHHHHHHHHH
Confidence 478999999999999999999986543
No 39
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.86 E-value=8.1 Score=32.48 Aligned_cols=52 Identities=27% Similarity=0.401 Sum_probs=29.7
Q ss_pred cccccccccccCCCCC--CCCCcEEecc--eEEEEEcCCCCeEEEEecCccccccCHH
Q psy8667 23 SRALGDFTFKRNTRVS--ATEQIIISMP--DVVVEKVTPEWEFVIIACDGIWDVMSNE 76 (163)
Q Consensus 23 tRalGD~~~K~~~~~~--~~~~~v~~~P--~i~~~~~~~~d~~lvL~SDGl~d~ls~~ 76 (163)
||..|||+.+..-... .+..+++++- |--...+ ++++|+.+-||++..||+-
T Consensus 83 SRG~GDf~VH~kl~e~~~~tga~vs~ee~DDaGvvr~--~~~yivvaiDGiHSRLSef 138 (449)
T COG1973 83 SRGEGDFFVHEKLAELAGKTGAVVSPEELDDAGVVRI--ENDYIVVAIDGIHSRLSEF 138 (449)
T ss_pred cCcccchhHHHHHHHHHhccccccCHHHcCCCCeEEe--cCceEEEEecchhhhhhcC
Confidence 7999999876432110 0112333322 1112333 3348999999999998863
No 40
>PRK01345 heat shock protein HtpX; Provisional
Probab=27.06 E-value=1e+02 Score=25.40 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.4
Q ss_pred EEEEecCccccccCHHHHHHHHHHHH
Q psy8667 61 FVIIACDGIWDVMSNEDVVAFVRLKI 86 (163)
Q Consensus 61 ~lvL~SDGl~d~ls~~ei~~~v~~~~ 86 (163)
-.|+.|+|+.+.++++|+..++...+
T Consensus 107 ~~V~vt~gLL~~L~~dEL~aVlAHEl 132 (317)
T PRK01345 107 AAVAATTGLLQRLSPEEVAGVMAHEL 132 (317)
T ss_pred eEEEechHHHhhCCHHHHHHHHHHHH
Confidence 36789999999999999999987644
No 41
>PRK03982 heat shock protein HtpX; Provisional
Probab=26.80 E-value=1.2e+02 Score=24.41 Aligned_cols=26 Identities=12% Similarity=0.446 Sum_probs=22.3
Q ss_pred EEEEecCccccccCHHHHHHHHHHHH
Q psy8667 61 FVIIACDGIWDVMSNEDVVAFVRLKI 86 (163)
Q Consensus 61 ~lvL~SDGl~d~ls~~ei~~~v~~~~ 86 (163)
-.|.-|||+.+.++++|+..++...+
T Consensus 108 ~~V~vt~gLl~~l~~~El~AVlAHEl 133 (288)
T PRK03982 108 AVVAVTEGILNLLNEDELEGVIAHEL 133 (288)
T ss_pred eEEEeehHHHhhCCHHHHHHHHHHHH
Confidence 45778999999999999999997654
No 42
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=25.91 E-value=2.2e+02 Score=19.50 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=34.9
Q ss_pred EecCccccccCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCC
Q psy8667 64 IACDGIWDVMSNEDVVAFVRLKIGEA--MEPEKICEELMTRCLAPD 107 (163)
Q Consensus 64 L~SDGl~d~ls~~ei~~~v~~~~~~~--~~~~~~a~~L~~~A~~~~ 107 (163)
-.||-+-+.++...+.+.+....... .-++.+|+.|.+..+..-
T Consensus 42 ~~~Ddl~~tidY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~ 87 (119)
T PRK11593 42 AKSDDVADCLSYADIAETVISHVEGARFALVERVAEEVAELLLARF 87 (119)
T ss_pred ccccCHhhccCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhC
Confidence 45888999999999999998876543 467889999998887654
No 43
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=25.76 E-value=1.8e+02 Score=18.79 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEecCC
Q psy8667 90 MEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCFLHG 128 (163)
Q Consensus 90 ~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l~~~ 128 (163)
.+++++.++|.++|.+.+++ .||=++|...
T Consensus 25 ~d~d~Al~eM~e~A~~lGAn---------AVVGvr~d~s 54 (74)
T TIGR03884 25 DNVDEIVENLREKVKAKGGM---------GLIAFRITCA 54 (74)
T ss_pred CCHHHHHHHHHHHHHHcCCC---------EEEEEEEEcC
Confidence 67899999999999998873 5666677543
No 44
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=25.30 E-value=2.5e+02 Score=19.82 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=38.8
Q ss_pred CCcEEecceEEEEEcCCCCeEEEEecCcccc-----ccCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy8667 41 EQIIISMPDVVVEKVTPEWEFVIIACDGIWD-----VMSNEDVVAFVRLKIGEAMEPEKICEEL 99 (163)
Q Consensus 41 ~~~v~~~P~i~~~~~~~~d~~lvL~SDGl~d-----~ls~~ei~~~v~~~~~~~~~~~~~a~~L 99 (163)
+.+|...|.+..+......-|-|.++.-.-+ .+++++|.-++.+. +.+.+++-+.|
T Consensus 40 k~ivf~~p~V~~m~~~G~~tYqI~G~~~~~~~~~~~~i~~eDI~lV~eq~---gvs~e~A~~AL 100 (116)
T TIGR00264 40 EEWIFENPKVQVMDILGVKTYQITGKPKKEKVEEEEEITEDDIELVMKQC---NVSKEEARRAL 100 (116)
T ss_pred ceEEEecCeeEEEecCCcEEEEEecccEEeecccccCCCHHHHHHHHHHh---CcCHHHHHHHH
Confidence 4568889999988888666677777776544 38888888777765 34555554444
No 45
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=23.43 E-value=3e+02 Score=20.00 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=40.4
Q ss_pred CCCeEEEEecCccccccCHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHcCCCCCCCCCCCCceEEEEEec
Q psy8667 57 PEWEFVIIACDGIWDVMSNEDVVAFVRLKI----GEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVVLVCFL 126 (163)
Q Consensus 57 ~~d~~lvL~SDGl~d~ls~~ei~~~v~~~~----~~~~~~~~~a~~L~~~A~~~~~~~~~~~~DNiTvivv~l~ 126 (163)
+++.++++-.||.-.-+....+...+...+ ....++..+.+.+-+....... ...-+|++++.++
T Consensus 27 ~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~~l~~~n~~l~~~~~-----~~~~~T~~~~~id 95 (193)
T smart00331 27 PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQILERLNRAIYENGE-----DGMFATLFLALYD 95 (193)
T ss_pred CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-----CCcEEEEEEEEEE
Confidence 444578889999998877666655555433 2334677777776555444322 1345777777663
No 46
>PHA02591 hypothetical protein; Provisional
Probab=22.57 E-value=1.4e+02 Score=19.59 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy8667 74 SNEDVVAFVRLKIGEAMEPEKICEEL 99 (163)
Q Consensus 74 s~~ei~~~v~~~~~~~~~~~~~a~~L 99 (163)
+.+++..+.++....|.+.+.+|+.|
T Consensus 44 ~~dd~~~vA~eL~eqGlSqeqIA~~L 69 (83)
T PHA02591 44 SEDDLISVTHELARKGFTVEKIASLL 69 (83)
T ss_pred ccchHHHHHHHHHHcCCCHHHHHHHh
Confidence 34566777777777888888888766
No 47
>PRK02870 heat shock protein HtpX; Provisional
Probab=22.37 E-value=1.3e+02 Score=25.14 Aligned_cols=26 Identities=8% Similarity=0.321 Sum_probs=22.5
Q ss_pred EEEEecCccccccCHHHHHHHHHHHH
Q psy8667 61 FVIIACDGIWDVMSNEDVVAFVRLKI 86 (163)
Q Consensus 61 ~lvL~SDGl~d~ls~~ei~~~v~~~~ 86 (163)
-.|..|||+.+.++++|+..++...+
T Consensus 156 ~~Ivvt~GLL~~L~~dEL~aVlAHEL 181 (336)
T PRK02870 156 AMVAITTGLLEKLDRDELQAVMAHEL 181 (336)
T ss_pred cEEEEehHHhhhCCHHHHHHHHHHHH
Confidence 36789999999999999999997654
No 48
>PRK03001 M48 family peptidase; Provisional
Probab=20.39 E-value=1.7e+02 Score=23.44 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.2
Q ss_pred EEEecCccccccCHHHHHHHHHHHHh
Q psy8667 62 VIIACDGIWDVMSNEDVVAFVRLKIG 87 (163)
Q Consensus 62 lvL~SDGl~d~ls~~ei~~~v~~~~~ 87 (163)
-|..|||+.+.++++|+..++...+.
T Consensus 108 ~Ivvt~gLl~~l~~~El~aVlAHElg 133 (283)
T PRK03001 108 AVAATTGILRVLSEREIRGVMAHELA 133 (283)
T ss_pred EEEecHHHHhhCCHHHHHHHHHHHHH
Confidence 47889999999999999999976543
No 49
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=20.22 E-value=90 Score=21.28 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCCCeEEEEecCccccccCHHHHHHHHHH
Q psy8667 56 TPEWEFVIIACDGIWDVMSNEDVVAFVRL 84 (163)
Q Consensus 56 ~~~d~~lvL~SDGl~d~ls~~ei~~~v~~ 84 (163)
+++| -++|+.|||+-.+...+..+.++.
T Consensus 23 ~~~D-~vlL~qdGV~aAl~~~~~~~sl~~ 50 (96)
T COG2168 23 TEGD-AVLLLQDGVYAALKGNRYLASLRE 50 (96)
T ss_pred cccC-eEEEEcccchhhhcCcHHHHHHhc
Confidence 3555 588999999999988777766664
Done!