RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8667
(163 letters)
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 195 bits (497), Expect = 5e-63
Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 6/131 (4%)
Query: 1 MKRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWE 60
+RI AGG V RVNG+LA+SRALGD+ +K TEQ++ P+V E E
Sbjct: 179 KERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDE 238
Query: 61 FVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTV 120
F+I+ACDGIWDVMSNE++ +V+ ++ + + E +C ++ CL DNM++
Sbjct: 239 FIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKG------SRDNMSI 292
Query: 121 VLVCFLHGKPY 131
VLVCF + +
Sbjct: 293 VLVCFSNEGHH 303
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 191 bits (487), Expect = 1e-61
Identities = 64/127 (50%), Positives = 84/127 (66%), Gaps = 2/127 (1%)
Query: 1 MKRIVAAGGWVEFD-RVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEW 59
+RI AGG V D RVNG L LSRA+GD +K N + A EQ+I ++PD+ V PE
Sbjct: 177 YQRIEKAGGRVTLDGRVNGGLNLSRAIGDHGYKMNKSLPAEEQMISALPDIEKITVGPED 236
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKIGEA-MEPEKICEELMTRCLAPDRELCGLGCDNM 118
EF+++ACDGIW+ M++E VV FV+ +I + M+ KICEEL CLAP G GCDNM
Sbjct: 237 EFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDHCLAPHTRGDGTGCDNM 296
Query: 119 TVVLVCF 125
T ++V F
Sbjct: 297 TAIIVQF 303
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 191 bits (488), Expect = 7e-61
Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 7/157 (4%)
Query: 1 MKRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPE-W 59
+RI AGG V RVNG+LA+SRALGDF +K TEQ++ P+V + + E
Sbjct: 172 KERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDD 231
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMT 119
+F+I+ACDGIWDVM NE++ FVR ++ + EK+C E++ CL DNM+
Sbjct: 232 QFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKG------SRDNMS 285
Query: 120 VVLVCFLHGKPYTSLVTKCGGSTTHATGGTVSKKKKE 156
V+L+CF + + K V + K+
Sbjct: 286 VILICFPNAPKVSPEAVKKEAELDKYLECRVEEIIKK 322
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 172 bits (438), Expect = 1e-53
Identities = 20/168 (11%), Positives = 54/168 (32%), Gaps = 12/168 (7%)
Query: 1 MKRIVAAGGWVEF----DRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVT 56
R+ AAGG + G + ++RA G F FK+ + + ++ ++PDV
Sbjct: 201 RHRVQAAGGVFTTVNGELLLGGVVPMTRAFGSFDFKKGGQGKLQQDLVSAVPDVTTFFAY 260
Query: 57 PEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEA-MEPEKICEELMTRCLAPDRELCGLGC 115
P + + G + + +A + + ++
Sbjct: 261 PGDDI-VAGTAGAFAHFRSHAAIAAAIALYPVSPETVLDAAKAMVVNAKRRK------VT 313
Query: 116 DNMTVVLVCFLHGKPYTSLVTKCGGSTTHATGGTVSKKKKEGVAVASN 163
N++ + + + + + ++ + + A+ +
Sbjct: 314 KNISTFVRHLPESRTRSQKMLEGTSGENGEEDFSIDRTNELTQALQAG 361
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 156 bits (397), Expect = 7e-48
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 2 KRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQ--------------IIISM 47
RI+ GG VE+ + N R GDF+F+++ + + +
Sbjct: 188 LRIMRNGGSVEYLHNHNNKPFIRG-GDFSFRKSRGEQPMQLQYSRAFGGKDLKMYGLSNQ 246
Query: 48 PDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPD 107
PDV V +VTP+ +I+A DG+WDVMS V E + L+ LA
Sbjct: 247 PDVRVVRVTPQHRVMILATDGLWDVMSAAQAVEIAMQAR---QEGRNPAQALVEMTLAEQ 303
Query: 108 RELCGLGCDNMTVVLVCF 125
+ DN+T + V F
Sbjct: 304 Q-SRNQSADNITAMTVFF 320
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 156 bits (395), Expect = 2e-47
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 27/149 (18%)
Query: 1 MKRIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTP 57
RI AGG V + RV G LA+SR++GD K +I P+V +
Sbjct: 198 YARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLK---------PYVIPEPEVTFMPRSR 248
Query: 58 EWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEP-------------EKICEELMTRCL 104
E E +I+A DG+WDVM+N++V R +I + + C+
Sbjct: 249 EDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLS 308
Query: 105 APDRELCGLGCDNMTVVLVCFLHGKPYTS 133
L DN++++++ + + +
Sbjct: 309 MLA--LQKGSKDNISIIVIDLKAQRKFKT 335
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 155 bits (394), Expect = 7e-47
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 24/139 (17%)
Query: 1 MKRIVAAGGWVEFD-----RVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKV 55
+RI GG+V ++ VNG LA++R++GD K + +I+ P+ K+
Sbjct: 263 KERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTS--------GVIAEPETKRIKL 314
Query: 56 TP-EWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLG 114
+ F+++ DGI +++++++ FV + +P + + + +
Sbjct: 315 HHADDSFLVLTTDGINFMVNSQEICDFVN----QCHDPNEAAHAVTEQAIQYG------T 364
Query: 115 CDNMTVVLVCFLHGKPYTS 133
DN T V+V F Y +
Sbjct: 365 EDNSTAVVVPFGAWGKYKN 383
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 152 bits (385), Expect = 7e-46
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 13/162 (8%)
Query: 1 MKRIVAAGGWVEFD---RVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTP 57
RI AGG VE RV+G LALSRA GD FK N + EQ +I++PDV
Sbjct: 209 ASRIEKAGGSVETFDVPRVDGVLALSRAFGDSDFKMNPNLPPEEQKVIAVPDVRQFYALS 268
Query: 58 EWEFVIIACDGIWDVMSNED--VVAFVRLKIGEA-MEPEKICEELMTRCLAPDRELCGLG 114
+ +++ACDG+++ + V ++ + + E++ +M +
Sbjct: 269 S-DLLLLACDGVYEPSGMDWAYVRDLTVAEMQRSKGDLEEVAARVMDYAYDMN------S 321
Query: 115 CDNMTVVLVCFLHGKPYTSLVTKCGGSTTHATGGTVSKKKKE 156
DN++V+LV F + + S KK
Sbjct: 322 QDNISVMLVAFHNQEVEHPTAVYKVVSGQVDKVEWDVAGKKG 363
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 149 bits (377), Expect = 2e-45
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 24/131 (18%)
Query: 1 MKRIVAAGGWVEFD-----RVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKV 55
+RI GG+V ++ VNG LA++R++GD K + +I+ P+ K+
Sbjct: 149 KERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTS--------GVIAEPETKRIKL 200
Query: 56 TP-EWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLG 114
+ F+++ DGI +++++++ FV + +P + + + +
Sbjct: 201 HHADDSFLVLTTDGINFMVNSQEICDFVN----QCHDPNEAAHAVTEQAIQYG------T 250
Query: 115 CDNMTVVLVCF 125
DN T V+V F
Sbjct: 251 EDNSTAVVVPF 261
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 145 bits (368), Expect = 1e-43
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 32/158 (20%)
Query: 1 MKRIVAAGGWV---EFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTP 57
RI AAGG V RV G LA+SR++GD K + II P+V K
Sbjct: 169 AARIEAAGGKVIQWNGARVFGVLAMSRSIGDRYLKPS---------IIPDPEVTAVKRVK 219
Query: 58 EWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGC-- 115
E + +I+A DG+WDVM++E+ R +I + + +E
Sbjct: 220 EDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGGASLLADERRKEGKDPAAMS 279
Query: 116 ---------------DNMTVVLVCFLHGKPYTSLVTKC 138
DN++VV+V KP L +K
Sbjct: 280 AAEYLSKLAIQRGSKDNISVVVVDL---KPRRKLKSKP 314
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 135 bits (340), Expect = 7e-39
Identities = 24/177 (13%), Positives = 64/177 (36%), Gaps = 26/177 (14%)
Query: 1 MKRIVAAG---GWVEFDRVNGNLALSRALGDFTFKRN-----TRVSATEQIIISMPDV-V 51
+ R+ G G ++ + +R +GD+ K +A + II+ P++
Sbjct: 215 LFRLSQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHG 274
Query: 52 VEKVTPEWEFVIIACDGIWDVMS--------NEDVVAFVRLKIGEAMEPEKICEELMTRC 103
+ + F+++ +G++ + N+++ A + + + + + + ++ R
Sbjct: 275 AQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRV 334
Query: 104 LAPDRELCGLGC---------DNMTVVLVCFLHGKPYTSLVTKCGGSTTHATGGTVS 151
+ G ++MT+++ F + S T VS
Sbjct: 335 KRIHSDTFASGGERARFCPRHEDMTLLVRNFGYPLGEMSQPTPSPAPAAGGRVYPVS 391
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 130 bits (328), Expect = 2e-37
Identities = 23/153 (15%), Positives = 57/153 (37%), Gaps = 28/153 (18%)
Query: 2 KRIVAAGGWVEFDRVNGNLALSRALGDFTFKR-----NTRVSATEQIIISMPDVV-VEKV 55
R+ G + + L +R +G++ K N SAT + +I P++V ++
Sbjct: 206 ARLFRLGLMAQ-NFEGVPLYSTRCIGNYLGKAGYKDCNFLSSATAEPVIFEPEIVGGIQI 264
Query: 56 TPEWEFVIIACDGIWDVM----------SNEDVVAFVRLKIGEAMEPEKICEELMTRCLA 105
TP F+++ G+ + N ++V + + + + ++ R +
Sbjct: 265 TPACRFLVLMSSGLCRALHEIFPGDASTGNRELVRMISEEFQNQSTLGGVAQSVVHRIVQ 324
Query: 106 PDRELCGLGC-----------DNMTVVLVCFLH 127
+ D++T+++ F +
Sbjct: 325 AHHDTYMQLVEEHRSVTFNSRDDVTLLIRNFNY 357
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 107 bits (269), Expect = 2e-28
Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 24/143 (16%)
Query: 5 VAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVS------------------------AT 40
A V+ DR+ G L RA GD FK + + T
Sbjct: 261 NEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHT 320
Query: 41 EQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELM 100
+ + P+V ++ P+ +F+++A DG+W+ M +DVV V + + I
Sbjct: 321 PPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGY 380
Query: 101 TRCLAPDRELCGLGCDNMTVVLV 123
L L M+ V
Sbjct: 381 KVTLGQMHGLLTERRAKMSSVFE 403
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.004
Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 16/111 (14%)
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKIGEAME---PEKICEELMTRCLAPDRELCGLGCD 116
E+ +A DVMS E +V V + G M+ P +A +
Sbjct: 1766 EYAALASLA--DVMSIESLVEVVFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 117 NMTVVLVCFLHGKPYTSLVT----KCGGSTTHATGGTVSKKKKEGVAVASN 163
+ V GK LV G + +N
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQY-VAAGD-----LRALDTVTN 1867
Score = 32.3 bits (73), Expect = 0.065
Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 62/200 (31%)
Query: 16 VNGNLALSRA-LGDFTFKRNTRVSATEQIIISM---PDVVVEKVT--PE--WEFVII--- 64
++ L++ + D+ K N+ + A +Q+ IS+ +V V+ P+ + +
Sbjct: 341 ISN---LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VSGPPQSLYGLNLTLRK 395
Query: 65 --ACDGIWDV----MSNEDVVAFVR-LKIGEA-----MEP--EKICEELMTRCL---APD 107
A G+ D S + R L + + P + I ++L+ + A D
Sbjct: 396 AKAPSGL-DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 108 -----------RELCGLGCDNMTVVLV-CFLHGKPYTSLVTKCGGSTTH--------ATG 147
+L L +++ +V C + T+ TH A+G
Sbjct: 455 IQIPVYDTFDGSDLRVLS-GSISERIVDCIIRLPVKWETTTQF--KATHILDFGPGGASG 511
Query: 148 -GTVSKKKKEG----VAVAS 162
G ++ + K+G V VA
Sbjct: 512 LGVLTHRNKDGTGVRVIVAG 531
Score = 27.7 bits (61), Expect = 2.5
Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 47/135 (34%)
Query: 41 EQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELM 100
+I + + E + + + G+ +++ ++ P
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGL-------NILEWLE-------NPSN------ 224
Query: 101 TRCLAPDRE-------------LCGLGCDNMTVVLVCFLHGKPYTSLVTKCGGSTTHATG 147
PD++ + L V+ L G L + G+T H+
Sbjct: 225 ----TPDKDYLLSIPISCPLIGVIQLAH----YVVTAKLLGFTPGELRSYLKGATGHS-Q 275
Query: 148 GTVSKKKKEGVAVAS 162
G V+ VA+A
Sbjct: 276 GLVT-----AVAIAE 285
Score = 27.3 bits (60), Expect = 2.6
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 41/103 (39%)
Query: 2 KRIVAAGGW-VEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDVV-VEKVTPEW 59
+R+ GW VE VN N +Q + + D+ ++ VT
Sbjct: 1831 ERVGKRTGWLVEI--VNYN------------------VENQQYVAA-GDLRALDTVT--- 1866
Query: 60 EFVIIACDGIWDVMSNEDV--VAFVRLKIGEAMEPEKICEELM 100
+V++ + + + L+ +++ E++ L
Sbjct: 1867 -----------NVLNFIKLQKIDIIELQ--KSLSLEEVEGHLF 1896
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 33.0 bits (76), Expect = 0.024
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 48 PDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPD 107
PD+ V + +++++ DG+ +++SN D+ + + + ++L+T
Sbjct: 179 PDLGVHLLEEG-DYLVVNSDGLTNMLSNADIATVLT----QEKTLDDKNQDLITLANH-- 231
Query: 108 RELCGLGCDNMTVVLV 123
G DN+TV LV
Sbjct: 232 ----RGGLDNITVALV 243
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 32.6 bits (75), Expect = 0.029
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 13/63 (20%)
Query: 62 VIIAC-DGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTV 120
++ DG++ + + I A+ ++ A R DN T+
Sbjct: 159 GVLVVSDGVYRSLHEDR--------IAMALSRGSDARGILQEVEAQGRP----YQDNATL 206
Query: 121 VLV 123
LV
Sbjct: 207 ALV 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.088
Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 45/135 (33%)
Query: 32 KRN-TRVSATEQI------IISMPDVVVE------K------VTPEWEFVIIACDGI-WD 71
K N +R+ ++ + +V+++ K V ++ I W
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW- 186
Query: 72 VMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVV---------- 121
L + PE + E L D D+ + +
Sbjct: 187 ------------LNLKNCNSPETVLEMLQKLLYQIDPNWTSR-SDHSSNIKLRIHSIQAE 233
Query: 122 LVCFLHGKPY-TSLV 135
L L KPY L+
Sbjct: 234 LRRLLKSKPYENCLL 248
Score = 30.6 bits (68), Expect = 0.26
Identities = 14/140 (10%), Positives = 31/140 (22%), Gaps = 49/140 (35%)
Query: 20 LALS---RALGDF--TFK--RNTRVSATEQIIISMPDVVVEKVTPE------WEFVIIAC 66
LS ++ D T+ ++ II + + + P +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTII----ESSLNVLEPAEYRKMFDRLSVF-- 381
Query: 67 DGIWDVMSNEDV-VAFVRLKI----GEAMEPEKICEELMTRCLA---PDRELCGL----- 113
+ + L + + + +L L P +
Sbjct: 382 --------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 114 ----GCDNMTVVLVCFLHGK 129
+N LH
Sbjct: 434 ELKVKLENEYA-----LHRS 448
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 31.0 bits (71), Expect = 0.11
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 22 LSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAF 81
+ RAL + P + + + + ++ DG+ D +S+E ++
Sbjct: 159 IMRALTGHEVE---------------PTLTMREARAG-DRYLLCSDGLSDPVSDETILEA 202
Query: 82 VRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMTVVLV 123
++ E + L+ LA G G DN+TVV+
Sbjct: 203 LQ-----IPEVAESAHRLIE--LALRG---G-GPDNVTVVVA 233
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 30.7 bits (70), Expect = 0.16
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 48 PDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPD 107
D+ + P + +++ DG+ + ++++ + ++ +K L+ A
Sbjct: 175 IDIQPIDLEPG-DRLLLCSDGLTEELTDDVISIYLS-----EPNVQKAAAALVD--AAKT 226
Query: 108 RELCGLGCDNMTVVLV 123
G G DN+TVV++
Sbjct: 227 H---G-GRDNVTVVVI 238
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural
genomics, TETR/CCRR FA helix turn helix DNA binding
domain, PSI; 2.20A {Salmonella typhimurium} SCOP:
a.4.1.9 a.121.1.1
Length = 224
Score = 30.4 bits (68), Expect = 0.19
Identities = 9/52 (17%), Positives = 22/52 (42%)
Query: 59 WEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDREL 110
E +++AC + +++ ED V + E + P + + + + P
Sbjct: 96 RELILLACKNMIMLLTQEDTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTH 147
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 30.2 bits (69), Expect = 0.21
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 48 PDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPD 107
PDV P + ++I+ DG++ +V + +P+ L+ +A D
Sbjct: 168 PDVFGIDCGPG-DRLLISSDGLFAAADEALIVDAAT-----SPDPQVAVRRLVE--VAND 219
Query: 108 RELCGLGCDNMTVVLV 123
G G DN TVV++
Sbjct: 220 A---G-GSDNTTVVVI 231
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 73 MSNEDVVAFVRLKIGEAMEPEKICE----ELMTRCLAPDRE 109
+SN+ FV G + ++C LM +C A +
Sbjct: 319 LSNQQTREFVEK--GGRLPCPELCPDAVFRLMEQCWAYEPG 357
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
glycoprotein, membrane, nucleotide-binding,
phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 27.4 bits (61), Expect = 2.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 73 MSNEDVVAFVRLKIGEAMEPEKIC----EELMTRCLAPDRE 109
SN++V+ FV G M+P K C +MT+C E
Sbjct: 290 KSNQEVLEFVTS--GGRMDPPKNCPGPVYRIMTQCWQHQPE 328
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 27.3 bits (61), Expect = 2.6
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 73 MSNEDVVAFVRLKIGEAMEPEKIC----EELMTRC 103
+SN + + + G +E + C +M C
Sbjct: 264 LSNTEAIDCITQ--GRELERPRACPPEVYAIMRGC 296
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 27.3 bits (61), Expect = 2.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 73 MSNEDVVAFVRLKIGEAMEPEKIC----EELMTRCLAPDRE 109
SN++V+ FV G M+P K C +MT+C E
Sbjct: 249 KSNQEVLEFVTS--GGRMDPPKNCPGPVYRIMTQCWQHQPE 287
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 26.4 bits (59), Expect = 4.0
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 73 MSNEDVVAFVRLKIGEAMEPEKICE----ELMTRCLAPDRE 109
SN+DVV +R + + C LM C
Sbjct: 234 YSNQDVVEMIRN--RQVLPCPDDCPAWVYALMIECWNEFPS 272
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
domain, hormone-growth factor complex; 1.50A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
1gag_A* 1irk_A 3bu3_A* ...
Length = 322
Score = 26.5 bits (59), Expect = 4.2
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 73 MSNEDVVAFVRLKIGEAMEPEKIC----EELMTRC 103
+SNE V+ FV G ++ C ELM C
Sbjct: 244 LSNEQVLRFV--MEGGLLDKPDNCPDMLFELMRMC 276
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 26.4 bits (58), Expect = 4.9
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 6/56 (10%)
Query: 111 CGLGCDNMTVVLVCFLH-----GKPYTSLVTKCGGSTTHATGGT-VSKKKKEGVAV 160
++ V F G +L + G T V K+ G V
Sbjct: 23 ISDVPSAYDIIAVAFADATTTPGAVTFNLDSAGLGGYTVDQFKADVRAKQAAGKKV 78
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription
regulation, transcription repressor, drug binding,
transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB:
3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Length = 216
Score = 26.3 bits (58), Expect = 5.0
Identities = 4/52 (7%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 60 EFVIIACDGIWDVMSNEDVVAFVRLKIGEAME-PEKICEELMTRCLAPDREL 110
E + ++ + + VAF ++ + + + + +
Sbjct: 96 EILTSFGLAFIEIFNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNI 147
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural
genomics, joint center for structural JCSG, protein
structure initiative, PSI-2; HET: MSE; 1.54A
{Mesorhizobium loti}
Length = 211
Score = 26.1 bits (58), Expect = 5.2
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 66 CDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDREL 110
+ V+ +E+++ RL I A ++ +
Sbjct: 96 ARRLIAVLMDEELLKLRRLIIANADRMPQLGRAWYEKGFERMLAS 140
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 26.4 bits (59), Expect = 5.3
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 41 EQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICE 97
E I++ P++ + + G+ D + E A V L+ G+ M ++I +
Sbjct: 455 ESILLQHPNIF--------DAGVA---GLPDDDAGELPAAVVVLEHGKTMTEKEIVD 500
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 26.4 bits (59), Expect = 5.6
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 19/61 (31%)
Query: 41 EQIIISMPDV----VVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKIC 96
E +++ P + V G+ D ++ E A V L+ G+ M +++
Sbjct: 457 ESVLLQHPSIFDAGVA---------------GVPDPVAGELPGAVVVLESGKNMTEKEVM 501
Query: 97 E 97
+
Sbjct: 502 D 502
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 26.1 bits (58), Expect = 6.1
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 73 MSNEDVVAFVRLKIGEAMEPEKIC----EELMTRC 103
M++E+V+ +VR G + + C LM C
Sbjct: 280 MAHEEVIYYVRD--GNILACPENCPLELYNLMRLC 312
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
phosphorylation, transferase-transfer inhibitor complex;
HET: 0F4; 2.20A {Homo sapiens}
Length = 297
Score = 26.0 bits (58), Expect = 6.4
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 73 MSNEDVVAFVRLKIGEAMEPEKIC----EELMTRC 103
+SN +V+ + G +E ++C ++M C
Sbjct: 239 LSNTEVIECIT--QGRVLERPRVCPKEVYDVMLGC 271
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT;
protein-protein complex, translation; HET: MSE; 2.20A
{Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Length = 291
Score = 25.9 bits (57), Expect = 7.1
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 17/72 (23%)
Query: 20 LALSRALGDFTFKRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVV 79
L++ D Q + P + + + VV
Sbjct: 224 LSVGSL--DDEPGGEAETKMLSQPYLLDPSITLGQYVQP---------------HGVSVV 266
Query: 80 AFVRLKIGEAME 91
FVR + GE +
Sbjct: 267 DFVRFECGEGED 278
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 25.7 bits (57), Expect = 7.3
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 21 ALSRALGDFTFKRNTRVSATEQ----IIISMPDVVVEKVTPEWEFVIIACDGIW 70
A+ LG + V E+ ++I D + + V++ DGI
Sbjct: 116 AVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGAD-VLVGADGIH 168
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 26.0 bits (58), Expect = 7.7
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 103 CLAPDRELCGLGCDNMTVVLVCFLHGKPYTSLVTKCGGSTTHATGGTVSKKKKEGVAV 160
CLAP REL ++ V GK YT + T G +V K K +
Sbjct: 194 CLAPSRELA------RQIMDVVTEMGK-YTEVKTAFGI------KDSVPKGAKIDAQI 238
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease
mutation, glycoprotein, nucleot binding,
phosphorylation, receptor; HET: ADP; 1.90A {Homo
sapiens} PDB: 3bpr_A* 2p0c_A*
Length = 313
Score = 25.7 bits (57), Expect = 7.9
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 73 MSNEDVVAFVRLKIGEAMEPEKICE----ELMTRCLAPDRE 109
+ N ++ ++ G ++ + C E+M C D
Sbjct: 253 VQNHEMYDYL--LHGHRLKQPEDCLDELYEIMYSCWRTDPL 291
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1,
transcriptional regulator of TETR family, bacterial
regulatory proteins; 1.50A {Rhodospirillum rubrum atcc
11170}
Length = 208
Score = 25.4 bits (56), Expect = 8.0
Identities = 5/45 (11%), Positives = 13/45 (28%)
Query: 66 CDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDREL 110
I + + + V+ R+ +A + + R
Sbjct: 95 VYDIAQAVLSREAVSLFRMLASDADLRNRFLPAYNANGIERSRRE 139
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 25.6 bits (57), Expect = 8.3
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 65 ACDGIWDVMSNEDVVAFVRLKIGEAMEPEKI 95
A G+ D + E VAFV ++I
Sbjct: 463 AVVGLKDEDAGEVPVAFVVKSEKSQATEDEI 493
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 25.8 bits (56), Expect = 8.8
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 44 IISMPDVVVEKVTPEWEFVIIACDGIW---DVM 73
+ +P + W F C+ W DV+
Sbjct: 91 LAVVPFGAAHILMKMWTFGNFWCE-FWTSIDVL 122
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 25.6 bits (57), Expect = 9.4
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 41 EQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELM 100
E I +MP VV E +I G+ E V A V G ++ ++ L
Sbjct: 415 ESEIDAMPGVV--------ESAVI---GVPHADFGEGVTAVVVRDKGATIDEAQVLHGLD 463
Query: 101 TRCLAP 106
+ LA
Sbjct: 464 GQ-LAK 468
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 25.6 bits (57), Expect = 9.5
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 76 EDVVAFVRLKIGEAMEPEKICEELMTRCLA----PDR 108
E AF+ + E + LM +A PD+
Sbjct: 479 EKSCAFIVSRNPELKAVV-LRRHLMELGIAQYKLPDQ 514
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR,
hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 25.4 bits (55), Expect = 9.5
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 44 IISMPDVVVEKVTPEWEFVIIACDGIW---DVM 73
+ MP ++ + +W C W D +
Sbjct: 59 AVVMPMNILYLLMSKWSLGRPLCL-FWLSMDYV 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.415
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,642,046
Number of extensions: 156870
Number of successful extensions: 345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 59
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)