RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8667
         (163 letters)



>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
           2C, catalytic domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 295

 Score =  104 bits (259), Expect = 3e-28
 Identities = 56/131 (42%), Positives = 80/131 (61%), Gaps = 8/131 (6%)

Query: 1   MKRIVAAGGWVEFDRVNGNLALSRALGDFTFKRNTRVSATEQIIISMPDV-VVEKVTPEW 59
            +RI  AGG V   RVNG+LA+SRALGDF +K       TEQ++   P+V  +E+   + 
Sbjct: 171 KERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDD 230

Query: 60  EFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDNMT 119
           +F+I+ACDGIWDVM NE++  FVR ++    + EK+C E++  CL           DNM+
Sbjct: 231 QFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKG------SRDNMS 284

Query: 120 VVLVCFLHGKP 130
           V+L+CF    P
Sbjct: 285 VILICF-PNAP 294


>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
           pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 235

 Score = 48.7 bits (115), Expect = 3e-08
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 58  EWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELMTRCLAPDRELCGLGCDN 117
             +  ++  DG+ D +S+E ++  +++      E  +    L+   L       G G DN
Sbjct: 177 AGDRYLLCSDGLSDPVSDETILEALQIP-----EVAESAHRLIELALR------GGGPDN 225

Query: 118 MTVVLVCFLH 127
           +TVV+    H
Sbjct: 226 VTVVVADLEH 235


>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
           sp. [TaxId: 512]}
          Length = 503

 Score = 29.2 bits (64), Expect = 0.22
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 11/66 (16%)

Query: 41  EQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAMEPEKICEELM 100
           E+++ + P V             +   G+ D    + V A V  ++GE +  + +     
Sbjct: 418 ERVLGTAPGVTE-----------VVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR 466

Query: 101 TRCLAP 106
           +  LA 
Sbjct: 467 SSELAD 472


>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts),
           dimerisation domain {Escherichia coli [TaxId: 562]}
          Length = 143

 Score = 25.7 bits (56), Expect = 2.1
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 15/63 (23%)

Query: 32  KRNTRVSATEQIIISMPDVVVEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLKIGEAME 91
           K    VS T Q  +  P   V ++  E                N +V  F+R ++GE +E
Sbjct: 82  KFTGEVSLTGQPFVMEPSKTVGQLLKE---------------HNAEVTGFIRFEVGEGIE 126

Query: 92  PEK 94
             +
Sbjct: 127 KVE 129


>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 285

 Score = 25.4 bits (55), Expect = 3.1
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 6/44 (13%)

Query: 70  WDVMSNEDVVAFV----RLKIGEAMEPEKICEELMTRCLAPDRE 109
           +  M   +V+AF+    R++      PE     LM+ C     E
Sbjct: 213 YKKMKGPEVMAFIEQGKRMECPPECPPE--LYALMSDCWIYKWE 254


>d1p4ea1 a.60.9.1 (A:2-129) Flp recombinase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 128

 Score = 25.1 bits (54), Expect = 3.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 52  VEKVTPEWEFVIIACDGIWDVMSNEDVVAFVRLK 85
           ++K+ P WEF II  +G        D+V+ ++L+
Sbjct: 92  LKKLIPAWEFTIIPYNGQKHQSDITDIVSSLQLQ 125


>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 317

 Score = 24.4 bits (52), Expect = 8.7
 Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 6/44 (13%)

Query: 70  WDVMSNEDVVAFV----RLKIGEAMEPEKICEELMTRCLAPDRE 109
           +D +   ++ + +    RL        +     +M +C   D +
Sbjct: 214 YDGIPASEISSILEKGERLPQPPICTID--VYMIMVKCWMIDAD 255


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0419    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 637,932
Number of extensions: 28970
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 13
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)