BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8670
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L LG+ A+WI+P + SP D GY
Sbjct: 33 WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 91
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
DISDY +G ++DF+ L L G+++++D V NH+S+QHEWFK S A+ PY+
Sbjct: 92 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 151
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
L LG+ A+WI+P + SP D GYDISDY + ++++D
Sbjct: 68 LKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDV 127
Query: 201 VPNHTSNQHEWFKKSLAN 218
V NH+S+QHEWFK S A+
Sbjct: 128 VINHSSDQHEWFKSSRAS 145
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L LG+ A+WI+P + SP D GY
Sbjct: 5 WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
DISDY +G ++DF+ L L G+++++D V NH+S+QHEWFK S A+ PY+
Sbjct: 64 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 123
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
L L LG+ A+WI+P + SP D GYDISDY + +++
Sbjct: 37 LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 96
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
+D V NH+S+QHEWFK S A+
Sbjct: 97 VDVVINHSSDQHEWFKSSRAS 117
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L LG+ A+WI+P + SP D GY
Sbjct: 5 WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
DISDY +G ++DF+ L L G+++++D V NH+S+QHEWFK S A+ PY+
Sbjct: 64 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 123
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
L L LG+ A+WI+P + SP D GYDISDY + +++
Sbjct: 37 LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 96
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
+D V NH+S+QHEWFK S A+
Sbjct: 97 VDVVINHSSDQHEWFKSSRAS 117
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L LG+ A+WI+P + SP D GY
Sbjct: 6 WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
DISDY +G ++DF+ L L G+++++D V NH+S+QHEWFK S A+ PY+
Sbjct: 65 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 124
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
L L LG+ A+WI+P + SP D GYDISDY + +++
Sbjct: 38 LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 97
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
+D V NH+S+QHEWFK S A+
Sbjct: 98 VDVVINHSSDQHEWFKSSRAS 118
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L LG+ A+WI+P + SP D GY
Sbjct: 6 WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
DISDY +G ++DF+ L L G+++++D V NH+S+QHEWFK S A+ PY+
Sbjct: 65 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 124
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
L L LG+ A+WI+P + SP D GYDISDY + +++
Sbjct: 38 LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 97
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
+D V NH+S+QHEWFK S A+
Sbjct: 98 VDVVINHSSDQHEWFKSSRAS 118
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L LG+ A+WI+P + SP D GY
Sbjct: 6 WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
DISDY +G ++DF+ L L G+++++D V NH+S+QHEWFK S A+ PY+
Sbjct: 65 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 124
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
L L LG+ A+WI+P + SP D GYDISDY + +++
Sbjct: 38 LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 97
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
+D V NH+S+QHEWFK S A+
Sbjct: 98 VDVVINHSSDQHEWFKSSRAS 118
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L LG+ A+WI+P + SP D GY
Sbjct: 5 WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
DISDY +G ++DF+ L L G+++++D V NH+S+QHEWFK S A+ PY+
Sbjct: 64 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 123
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
L L LG+ A+WI+P + SP D GYDISDY + +++
Sbjct: 37 LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 96
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
+D V NH+S+QHEWFK S A+
Sbjct: 97 VDVVINHSSDQHEWFKSSRAS 117
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW+ V Y +YPRSF D+NGDG+GDL+G+IEKL ++L +LGV VWI PI++SP AD GY
Sbjct: 5 WWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKL-DYLVELGVDIVWICPIYRSPNADNGY 63
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
DISDY + FG + DF+ L + H G+K++LD V NHTS++H WF +S ++
Sbjct: 64 DISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSS 117
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
L +LGV VWI PI++SP AD GYDISDY I K++LD
Sbjct: 40 LVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDL 99
Query: 201 VPNHTSNQHEWFKKSLAN 218
V NHTS++H WF +S ++
Sbjct: 100 VINHTSDEHPWFIESRSS 117
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
+WW+ SV Y +YPRSF DSNGDG+GDL+G+I KL ++L +LG+ +W+SP+++SP D G
Sbjct: 4 QWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKL-DYLKELGIDVIWLSPVYESPNDDNG 62
Query: 96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
YDISDY FG ++D++ L +H +K+++D V NHTS++H WF +S
Sbjct: 63 YDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIES 114
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 22/80 (27%)
Query: 158 SLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------K 195
S L L +LG+ +W+SP+++SP D GYDISDY +I K
Sbjct: 35 SKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMK 94
Query: 196 ILLDFVPNHTSNQHEWFKKS 215
+++D V NHTS++H WF +S
Sbjct: 95 LMMDLVVNHTSDEHNWFIES 114
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW+ +V Y +YP+SF+DSNGDG+GDL+G+I +L ++L LG+ A+W+SP+++SP D GY
Sbjct: 6 WWKNAVVYQVYPKSFQDSNGDGIGDLQGIISRL-DYLEKLGIDAIWLSPVYQSPGVDNGY 64
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
DISDY + +P +G + D + L + IKI++D V NHTS+QH+WF
Sbjct: 65 DISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDLVVNHTSDQHKWF 112
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 22/77 (28%)
Query: 158 SLLARLHDLGVGAVWISPIFKSPMADFGYDISDYL----------------------RIK 195
S L L LG+ A+W+SP+++SP D GYDISDY IK
Sbjct: 36 SRLDYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIK 95
Query: 196 ILLDFVPNHTSNQHEWF 212
I++D V NHTS+QH+WF
Sbjct: 96 IVMDLVVNHTSDQHKWF 112
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 86/121 (71%), Gaps = 2/121 (1%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
+WW+ +VFY +YPRSFKD+NGDG+GD+ G+IEKL ++L LG+ A+WI+P + SP D G
Sbjct: 4 KWWKEAVFYQVYPRSFKDTNGDGIGDINGIIEKL-DYLKALGIDAIWINPHYDSPNTDNG 62
Query: 96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PY 154
YDI DY +G ++DF+ L + +++++D V NHTS+Q+EWF KS ++ PY
Sbjct: 63 YDIRDYRKIMKEYGTMEDFDRLISEMKKRNMRLMIDVVINHTSDQNEWFVKSKSSKDNPY 122
Query: 155 K 155
+
Sbjct: 123 R 123
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 22/78 (28%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
L L LG+ A+WI+P + SP D GYDI DY +I +++
Sbjct: 37 LDYLKALGIDAIWINPHYDSPNTDNGYDIRDYRKIMKEYGTMEDFDRLISEMKKRNMRLM 96
Query: 198 LDFVPNHTSNQHEWFKKS 215
+D V NHTS+Q+EWF KS
Sbjct: 97 IDVVINHTSDQNEWFVKS 114
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 92/132 (69%), Gaps = 5/132 (3%)
Query: 28 DVPIQEPLE---WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWIS 84
D+ +Q+ E WW+ +VFY +YPRSFKD+N DG+GD++G+IEKL ++L LG+ A+WI+
Sbjct: 7 DIHVQKESEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKL-DYLKSLGIDAIWIN 65
Query: 85 PIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
P + SP D GYDIS+Y +G ++DF++L + +++++D V NHTS+QH WF
Sbjct: 66 PHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWF 125
Query: 145 KKSLANI-PPYK 155
+S ++ PY+
Sbjct: 126 IQSKSDKNNPYR 137
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
L LG+ A+WI+P + SP D GYDIS+Y +I ++++D
Sbjct: 54 LKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDV 113
Query: 201 VPNHTSNQHEWFKKSLAN 218
V NHTS+QH WF +S ++
Sbjct: 114 VINHTSDQHPWFIQSKSD 131
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Query: 30 PIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS 89
P EP +WW+ + FY +YP SFKDSN DG GD+KG+ KL E++ +LG A+WISP + S
Sbjct: 8 PETEP-KWWKEATFYQIYPASFKDSNDDGWGDMKGIASKL-EYIKELGADAIWISPFYDS 65
Query: 90 PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA 149
P D GYDI++Y P +G +D L E+ H LG+K + D V NH S++HEWFK+S +
Sbjct: 66 PQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRS 125
Query: 150 N 150
+
Sbjct: 126 S 126
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 22/84 (26%)
Query: 157 ASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY----------------------LRI 194
AS L + +LG A+WISP + SP D GYDI++Y L +
Sbjct: 43 ASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGM 102
Query: 195 KILLDFVPNHTSNQHEWFKKSLAN 218
K + D V NH S++HEWFK+S ++
Sbjct: 103 KFITDLVINHCSSEHEWFKESRSS 126
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Query: 30 PIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS 89
P EP +WW+ + FY +YP SFKDSN DG GD+KG+ KL E++ +LG A+WISP + S
Sbjct: 8 PETEP-KWWKEATFYQIYPASFKDSNDDGWGDMKGIASKL-EYIKELGADAIWISPFYDS 65
Query: 90 PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA 149
P D GYDI++Y P +G +D L E+ H LG+K + D V NH S++HEWFK+S +
Sbjct: 66 PQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRS 125
Query: 150 N 150
+
Sbjct: 126 S 126
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 22/84 (26%)
Query: 157 ASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY----------------------LRI 194
AS L + +LG A+WISP + SP D GYDI++Y L +
Sbjct: 43 ASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGM 102
Query: 195 KILLDFVPNHTSNQHEWFKKSLAN 218
K + D V NH S++HEWFK+S ++
Sbjct: 103 KFITDLVINHCSSEHEWFKESRSS 126
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW + Y +YP+SF D+NGDG+GDLKG+ KL ++L LGV A+W+SP++ SPM D GY
Sbjct: 5 WWHKATVYQIYPKSFMDTNGDGIGDLKGITSKL-DYLQKLGVMAIWLSPVYDSPMDDNGY 63
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
DI++Y + +FG++ D + L + GIKI++D V NHTS++H WF
Sbjct: 64 DIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWF 111
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 22/79 (27%)
Query: 156 CASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY---------------------LR- 193
S L L LGV A+W+SP++ SPM D GYDI++Y +R
Sbjct: 33 ITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRG 92
Query: 194 IKILLDFVPNHTSNQHEWF 212
IKI++D V NHTS++H WF
Sbjct: 93 IKIIMDLVVNHTSDEHAWF 111
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW + Y +YP+SF D+NGDG+GDLKG+ KL ++L LGV A+W+SP++ SPM D GY
Sbjct: 5 WWHKATVYQIYPKSFMDTNGDGIGDLKGITSKL-DYLQKLGVMAIWLSPVYDSPMDDNGY 63
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
DI++Y + +FG++ D + L + GIKI++D V NHTS++H WF
Sbjct: 64 DIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWF 111
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 22/79 (27%)
Query: 156 CASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY---------------------LR- 193
S L L LGV A+W+SP++ SPM D GYDI++Y +R
Sbjct: 33 ITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRG 92
Query: 194 IKILLDFVPNHTSNQHEWF 212
IKI++D V NHTS++H WF
Sbjct: 93 IKIIMDLVVNHTSDEHAWF 111
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 75/114 (65%), Gaps = 8/114 (7%)
Query: 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKL-------PEHLHDLGVGAVWISPIFKSPMAD 93
+Y ++ RSF DS+GDG+GDLKG+IEKL PE + DLGV +W+ PIFKSP +
Sbjct: 5 GTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSP-SY 63
Query: 94 FGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
GYD++DY P +G L+DF L E H GIK+++D NHTS +H WF K+
Sbjct: 64 HGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKA 117
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 23/75 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
+ DLGV +W+ PIFKSP + GYD++DY +I K+++D
Sbjct: 44 IADLGVNGIWLMPIFKSP-SYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDL 102
Query: 201 VPNHTSNQHEWFKKS 215
NHTS +H WF K+
Sbjct: 103 PINHTSERHPWFLKA 117
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 34 PLEWWQTS---VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP 90
P W +T + Y L SF DS+GDG GDL G+ +KL ++L+ LGV A+W+SPI
Sbjct: 28 PDTWDETKRADISYQLLLYSFADSDGDGYGDLNGVTQKL-DYLNQLGVKALWLSPIHPC- 85
Query: 91 MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK-SLA 149
M+ GYD++DY P G DF+ L H GIKI LD+V NHT H WF + S +
Sbjct: 86 MSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVMNHTGTAHPWFTEASSS 145
Query: 150 NIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI 194
+ PY+ + + A I+ I + A GY+ +++ ++
Sbjct: 146 SESPYRNYYSFSEDPKTDIAAGKIAMITQEGAA--GYNAAEWFQV 188
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 24/86 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKIL 197
L L+ LGV A+W+SPI M+ GYD++DY + IKI
Sbjct: 66 LDYLNQLGVKALWLSPIHPC-MSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIY 124
Query: 198 LDFVPNHTSNQHEWFKK-SLANIPPY 222
LD+V NHT H WF + S ++ PY
Sbjct: 125 LDYVMNHTGTAHPWFTEASSSSESPY 150
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 34 PLEWWQTS---VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP 90
P W +T + Y L SF DS+GDG GDL G+ +KL ++L+ LGV A+W+SPI P
Sbjct: 28 PDTWDETKRADISYQLLLYSFADSDGDGYGDLNGVTQKL-DYLNQLGVKALWLSPIH--P 84
Query: 91 MADF-GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK-SL 148
+ GYD++DY P G DF+ L H GIKI LD+V NHT H WF + S
Sbjct: 85 CXSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVXNHTGTAHPWFTEASS 144
Query: 149 ANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI 194
++ PY+ + + A I+ I + A GY+ +++ ++
Sbjct: 145 SSESPYRNYYSFSEDPKTDIAAGKIAXITQEGAA--GYNAAEWFQV 188
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 26/87 (29%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADF-GYDISDYLR----------------------IKI 196
L L+ LGV A+W+SPI P + GYD++DY + IKI
Sbjct: 66 LDYLNQLGVKALWLSPIH--PCXSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKI 123
Query: 197 LLDFVPNHTSNQHEWFKK-SLANIPPY 222
LD+V NHT H WF + S ++ PY
Sbjct: 124 YLDYVXNHTGTAHPWFTEASSSSESPY 150
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 44 YHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLS 103
Y +Y RSF+D N DGVGD +G+ + +L +LG+ VW+ P+F S ++ GYD+ D+ S
Sbjct: 4 YQIYVRSFRDGNLDGVGDFRGLKNAVS-YLKELGIDFVWLMPVF-SSISFHGYDVVDFYS 61
Query: 104 FEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLA-R 162
F+ +G ++F+ + E H GIK++LD +HT H WF+K+L P Y+ + A +
Sbjct: 62 FKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANK 121
Query: 163 LHDLGVGAVWISPIFKSPMAD 183
DL W P+ D
Sbjct: 122 ETDLDERREWDGEKIWHPLED 142
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 23/88 (26%)
Query: 158 SLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IK 195
+ ++ L +LG+ VW+ P+F S ++ GYD+ D+ IK
Sbjct: 27 NAVSYLKELGIDFVWLMPVF-SSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIK 85
Query: 196 ILLDFVPNHTSNQHEWFKKSLANIPPYS 223
++LD +HT H WF+K+L P Y
Sbjct: 86 VVLDLPIHHTGFLHTWFQKALKGDPHYR 113
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
EW + +V Y ++P F +NGD G GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74 HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
+LGV A++ +PIF SP + YD +DYL+ +P FGDL F L + H GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
NH +Q F+ L
Sbjct: 242 FNHAGDQFFAFRDVL 256
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 23/76 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L +LGV A++ +PIF SP + YD +DYL IKI+LD
Sbjct: 182 LEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 201 VPNHTSNQHEWFKKSL 216
V NH +Q F+ L
Sbjct: 241 VFNHAGDQFFAFRDVL 256
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
EW + +V Y ++P F +NGD G GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74 HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
+LGV A++ +PIF SP + YD +DYL+ +P FGDL F L + H GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
NH +Q F+ L
Sbjct: 242 FNHAGDQFFAFRDVL 256
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 23/76 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L +LGV A++ +PIF SP + YD +DYL IKI+LD
Sbjct: 182 LEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 201 VPNHTSNQHEWFKKSL 216
V NH +Q F+ L
Sbjct: 241 VFNHAGDQFFAFRDVL 256
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
EW + +V Y ++P F +NGD G GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74 HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
+LGV A++ +PIF SP + YD +DYL+ +P FGDL F L + H GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
NH +Q F+ L
Sbjct: 242 FNHAGDQFFAFRDVL 256
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 23/76 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L +LGV A++ +PIF SP + YD +DYL IKI+LD
Sbjct: 182 LEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 201 VPNHTSNQHEWFKKSL 216
V NH +Q F+ L
Sbjct: 241 VFNHAGDQFFAFRDVL 256
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
EW + +V Y ++P F +NGD G GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74 HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
+LGV A++ +PIF SP + YD +DYL+ +P FGDL F L + H GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
NH +Q F+ L
Sbjct: 242 FNHAGDQFFAFRDVL 256
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 23/76 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L +LGV A++ +PIF SP + YD +DYL IKI+LD
Sbjct: 182 LEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 201 VPNHTSNQHEWFKKSL 216
V NH +Q F+ L
Sbjct: 241 VFNHAGDQFFAFRDVL 256
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
EW + +V Y ++P F +NGD G GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74 HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
+LGV A++ +PIF SP + YD +DYL+ +P FGDL F L + H GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
NH +Q F+ L
Sbjct: 242 FNHAGDQFFAFRDVL 256
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 23/76 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L +LGV A++ +PIF SP + YD +DYL IKI+LD
Sbjct: 182 LEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 201 VPNHTSNQHEWFKKSL 216
V NH +Q F+ L
Sbjct: 241 VFNHAGDQFFAFRDVL 256
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
EW + +V Y ++P F +NGD G GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74 HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
+LGV A++ +PIF SP + YD +DYL+ +P FGDL F L + H GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
NH +Q F+ L
Sbjct: 242 FNHAGDQFFAFRDVL 256
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 23/76 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L +LGV A++ +PIF SP + YD +DYL IKI+LD
Sbjct: 182 LEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 201 VPNHTSNQHEWFKKSL 216
V NH +Q F+ L
Sbjct: 241 VFNHAGDQFFAFRDVL 256
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
EW + +V Y ++P F +NGD G GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74 HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
+LGV A++ +PIF SP + YD +DYL+ +P FGDL F L + H GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
NH +Q F+ L
Sbjct: 242 FNHAGDQFFAFRDVL 256
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 23/76 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L +LGV A++ +PIF SP + YD +DYL IKI+LD
Sbjct: 182 LEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 201 VPNHTSNQHEWFKKSL 216
V NH +Q F+ L
Sbjct: 241 VFNHAGDQFFAFRDVL 256
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
EW + +V Y ++P F +NGD G GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74 HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
+LGV A++ +PIF SP + YD +DYL+ +P FGDL F L + H GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
NH +Q F+ L
Sbjct: 242 FNHAGDQFFAFRDVL 256
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 23/76 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L +LGV A++ +PIF SP + YD +DYL IKI+LD
Sbjct: 182 LEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 201 VPNHTSNQHEWFKKSL 216
V NH +Q F+ L
Sbjct: 241 VFNHAGDQFFAFRDVL 256
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
EW + +V Y ++P F +NGD G GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74 HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
+LGV A++ +PIF SP + YD +DYL+ +P FGDL F L + H GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
NH +Q F+ L
Sbjct: 242 FNHAGDQFFAFRDVL 256
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 23/76 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L +LGV A++ +PIF SP + YD +DYL IKI+LD
Sbjct: 182 LEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 201 VPNHTSNQHEWFKKSL 216
V NH +Q F+ L
Sbjct: 241 VFNHAGDQFFAFRDVL 256
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
GDLKG+ +K+P + +LG+ +++ P+FK P +D GY +S Y P G + D
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
+ LH GI ++DF+ NHTSN+HEW ++ A P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 24/82 (29%)
Query: 163 LHDLGVGAVWISPIFKSP--MADFGYDISDY------------LR----------IKILL 198
+LG+ +++ P+FK P +D GY +S Y LR I ++
Sbjct: 122 FQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVV 181
Query: 199 DFVPNHTSNQHEWFKKSLANIP 220
DF+ NHTSN+HEW ++ A P
Sbjct: 182 DFIFNHTSNEHEWAQRCAAGDP 203
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
GDLKG+ +K+P + +LG+ +++ P+FK P +D GY +S Y P G + D
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
+ LH GI ++DF+ NHTSN+HEW ++ A P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 24/82 (29%)
Query: 163 LHDLGVGAVWISPIFKSP--MADFGYDISDY------------LR----------IKILL 198
+LG+ +++ P+FK P +D GY +S Y LR I ++
Sbjct: 122 FQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVV 181
Query: 199 DFVPNHTSNQHEWFKKSLANIP 220
DF+ NHTSN+HEW ++ A P
Sbjct: 182 DFIFNHTSNEHEWAQRCAAGDP 203
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 21/134 (15%)
Query: 36 EWWQTSVFYHLYPRSFKDSNG----DGV---------------GDLKGMIEKLPEHLHDL 76
+W + +V+Y ++P F + N G GDL+G+I+ L ++L DL
Sbjct: 130 DWVKDTVWYQIFPERFANGNPAISPKGARPWGSEDPTPTSFFGGDLQGIIDHL-DYLADL 188
Query: 77 GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
G+ ++++PIF++P ++ YD +DY +P FGD + +TL +R H GI+++LD V NH
Sbjct: 189 GITGIYLTPIFRAP-SNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDAVFNH 247
Query: 137 TSNQHEWFKKSLAN 150
+ F+ L N
Sbjct: 248 CGYEFAPFQDVLKN 261
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 23/78 (29%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L DLG+ ++++PIF++P ++ YD +DY I+++LD
Sbjct: 185 LADLGITGIYLTPIFRAP-SNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDA 243
Query: 201 VPNHTSNQHEWFKKSLAN 218
V NH + F+ L N
Sbjct: 244 VFNHCGYEFAPFQDVLKN 261
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 21/134 (15%)
Query: 36 EWWQTSVFYHLYPRSFKDSNG----DGV---------------GDLKGMIEKLPEHLHDL 76
+W + +V+Y ++P F + N G GDL+G+I+ L ++L DL
Sbjct: 130 DWVKDTVWYQIFPERFANGNPAISPKGARPWGSEDPTPTSFFGGDLQGIIDHL-DYLADL 188
Query: 77 GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
G+ ++++PIF++P ++ YD +DY +P FGD + +TL +R H GI+++LD V NH
Sbjct: 189 GITGIYLTPIFRAP-SNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDAVFNH 247
Query: 137 TSNQHEWFKKSLAN 150
+ F+ L N
Sbjct: 248 CGYEFAPFQDVLKN 261
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 23/78 (29%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L DLG+ ++++PIF++P ++ YD +DY I+++LD
Sbjct: 185 LADLGITGIYLTPIFRAP-SNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDA 243
Query: 201 VPNHTSNQHEWFKKSLAN 218
V NH + F+ L N
Sbjct: 244 VFNHCGYEFAPFQDVLKN 261
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
GDLKG+ +K+P + +LG+ + + P+FK P +D GY +S Y P G + D
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
+ LH GI ++DF+ NHTSN+HEW ++ A P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 24/82 (29%)
Query: 163 LHDLGVGAVWISPIFKSP--MADFGYDISDY------------LR----------IKILL 198
+LG+ + + P+FK P +D GY +S Y LR I ++
Sbjct: 122 FQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVV 181
Query: 199 DFVPNHTSNQHEWFKKSLANIP 220
DF+ NHTSN+HEW ++ A P
Sbjct: 182 DFIFNHTSNEHEWAQRCAAGDP 203
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
GDLKG+ +K+P + +LG+ + + P+FK P +D GY +S Y P G + D
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
+ LH GI ++DF+ NHTSN+HEW ++ A P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 24/82 (29%)
Query: 163 LHDLGVGAVWISPIFKSP--MADFGYDISDY------------LR----------IKILL 198
+LG+ + + P+FK P +D GY +S Y LR I ++
Sbjct: 122 FQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVV 181
Query: 199 DFVPNHTSNQHEWFKKSLANIP 220
DF+ NHTSN+HEW ++ A P
Sbjct: 182 DFIFNHTSNEHEWAQRCAAGDP 203
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
GDLKG+ +K+P + +LG+ + + P+FK P +D GY +S Y P G + D
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
+ LH GI ++DF+ NHTSN+HEW ++ A P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 24/82 (29%)
Query: 163 LHDLGVGAVWISPIFKSP--MADFGYDISDY------------LR----------IKILL 198
+LG+ + + P+FK P +D GY +S Y LR I ++
Sbjct: 122 FQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVV 181
Query: 199 DFVPNHTSNQHEWFKKSLANIP 220
DF+ NHTSN+HEW ++ A P
Sbjct: 182 DFIFNHTSNEHEWAQRCAAGDP 203
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
GDLKG+ +K+P + +LG+ + + P+FK P +D GY +S Y P G + D
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
+ LH GI ++DF+ NHTSN+HEW ++ A P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 24/82 (29%)
Query: 163 LHDLGVGAVWISPIFKSP--MADFGYDISDY------------LR----------IKILL 198
+LG+ + + P+FK P +D GY +S Y LR I ++
Sbjct: 122 FQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVV 181
Query: 199 DFVPNHTSNQHEWFKKSLANIP 220
DF+ NHTSN+HEW ++ A P
Sbjct: 182 DFIFNHTSNEHEWAQRCAAGDP 203
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
GDLKG+ +K+P + +LG+ + + P+FK P +D GY +S Y P G + D
Sbjct: 113 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 171
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
+ LH GI ++DF+ NHTSN+HEW ++ A P
Sbjct: 172 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 207
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 24/82 (29%)
Query: 163 LHDLGVGAVWISPIFKSP--MADFGYDISDY------------LR----------IKILL 198
+LG+ + + P+FK P +D GY +S Y LR I ++
Sbjct: 126 FQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVV 185
Query: 199 DFVPNHTSNQHEWFKKSLANIP 220
DF+ NHTSN+HEW ++ A P
Sbjct: 186 DFIFNHTSNEHEWAQRCAAGDP 207
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
GDLKG+ +K+P + +LG+ + + P+FK P +D GY +S Y P G + D
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
+ LH GI ++DF+ NHTSN+HEW ++ A P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 24/82 (29%)
Query: 163 LHDLGVGAVWISPIFKSP--MADFGYDISDY------------LR----------IKILL 198
+LG+ + + P+FK P +D GY +S Y LR I ++
Sbjct: 122 FQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVV 181
Query: 199 DFVPNHTSNQHEWFKKSLANIP 220
DF+ NHTSN+HEW ++ A P
Sbjct: 182 DFIFNHTSNEHEWAQRCAAGDP 203
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 21/141 (14%)
Query: 29 VPIQEPLEWWQTSVFYHLYPRSFKDSNG----DGV---------------GDLKGMIEKL 69
V + E +W + +V+Y ++P F + N +G GDL+G+I+ L
Sbjct: 123 VDLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHL 182
Query: 70 PEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129
++L DLG+ ++++PIF+SP ++ YD +DY +P FGD + +TL +R H GI+++
Sbjct: 183 -DYLVDLGITGIYLTPIFRSP-SNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVM 240
Query: 130 LDFVPNHTSNQHEWFKKSLAN 150
LD V NH + F+ N
Sbjct: 241 LDAVFNHCGYEFAPFQDVWKN 261
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI 194
L L DLG+ ++++PIF+SP ++ YD +DY +
Sbjct: 182 LDYLVDLGITGIYLTPIFRSP-SNHKYDTADYFEV 215
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 21/141 (14%)
Query: 29 VPIQEPLEWWQTSVFYHLYPRSFKDSNG----DGV---------------GDLKGMIEKL 69
V + E +W + +V+Y ++P F + N +G GDL+G+I+ L
Sbjct: 123 VDLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHL 182
Query: 70 PEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129
++L DLG+ ++++PIF+SP ++ YD +DY +P FGD + +TL +R H GI+++
Sbjct: 183 -DYLVDLGITGIYLTPIFRSP-SNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVM 240
Query: 130 LDFVPNHTSNQHEWFKKSLAN 150
LD V NH + F+ N
Sbjct: 241 LDAVFNHCGYEFAPFQDVWKN 261
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI 194
L L DLG+ ++++PIF+SP ++ YD +DY +
Sbjct: 182 LDYLVDLGITGIYLTPIFRSP-SNHKYDTADYFEV 215
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 25/143 (17%)
Query: 29 VPIQEPLEWWQTSVFYHLYPRSFKDSNGDGV---------------------GDLKGMIE 67
V + +P W + ++FY ++P F +NGD GDL+G+I+
Sbjct: 119 VDVFQPPAWVKDAIFYQIFPERF--ANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVID 176
Query: 68 KLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
L +HL LGV AV+ +P+FK+ + YD DY +P FGD + L + H GI+
Sbjct: 177 HL-DHLSKLGVNAVYFTPLFKA-TTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIR 234
Query: 128 ILLDFVPNHTSNQHEWFKKSLAN 150
+LLD V NH+ F L N
Sbjct: 235 VLLDAVFNHSGRTFPPFVDVLKN 257
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 23/81 (28%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKIL 197
L L LGV AV+ +P+FK+ + YD DY + I++L
Sbjct: 178 LDHLSKLGVNAVYFTPLFKA-TTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVL 236
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
LD V NH+ F L N
Sbjct: 237 LDAVFNHSGRTFPPFVDVLKN 257
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 22/153 (14%)
Query: 29 VPIQEPLEWWQTSVFYHLYPRSFKDSN-----------------GDGVGDLKGMIEKLPE 71
+P + W+ +V+Y ++ SF + + G GDL G+++ + +
Sbjct: 214 IPGVDKPRWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHI-D 272
Query: 72 HLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLD 131
HL DLGV ++++PIF S + YD DY S + G ++DFE L + LH+ IKI+LD
Sbjct: 273 HLEDLGVETIYLTPIFSS-TSYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLD 331
Query: 132 FVPNHTSNQHEWFKKSL---ANIPPYKCASLLA 161
+HT+ +E F K+L N P ++ S L+
Sbjct: 332 ITMHHTNPCNELFVKALREGENSPYWEMFSFLS 364
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 23/76 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDY----------------------LRIKILLDF 200
L DLGV ++++PIF S + YD DY +IKI+LD
Sbjct: 274 LEDLGVETIYLTPIFSS-TSYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDI 332
Query: 201 VPNHTSNQHEWFKKSL 216
+HT+ +E F K+L
Sbjct: 333 TMHHTNPCNELFVKAL 348
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 67.8 bits (164), Expect = 4e-12, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 60 GDLKGMIEKLPE-HLHDLGVGAVWIS-PIFK--SPMAD-------FGYDISDYLSFEPLF 108
GD +G+I K+ + +L D+GV A+WIS P+ S M D GY D+ P F
Sbjct: 49 GDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFF 108
Query: 109 GDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLA 161
G L DF+ L + HA GIK+++DF PNHTS E + N Y +LL
Sbjct: 109 GTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLG 161
Score = 35.8 bits (81), Expect = 0.019, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 34/81 (41%)
Query: 163 LHDLGVGAVWIS-PI-----------------------FKSPMADFGYDISDYLR----- 193
L D+GV A+WIS P+ FK P FG +SD+ R
Sbjct: 63 LTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFG-TLSDFQRLVDAA 121
Query: 194 ----IKILLDFVPNHTSNQHE 210
IK+++DF PNHTS E
Sbjct: 122 HAKGIKVIIDFAPNHTSPASE 142
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA--DFGYDISDYLSFEPLFGDLKDFET 116
G LKG+ E+L ++L LGV + + P+ + D GY + DY + P G + D
Sbjct: 107 AGTLKGVEERL-DYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSA 165
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKC 156
L L GI ++LD V NH + +H W +K+ A P Y+
Sbjct: 166 LARALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRA 205
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 24/86 (27%)
Query: 163 LHDLGVGAVWISPIFKSPMA--DFGYDISDYLRIK----------------------ILL 198
L LGV + + P+ + D GY + DY ++ ++L
Sbjct: 120 LEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSALARALRGRGISLVL 179
Query: 199 DFVPNHTSNQHEWFKKSLANIPPYSV 224
D V NH + +H W +K+ A P Y
Sbjct: 180 DLVLNHVAREHAWAQKARAGDPKYRA 205
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 65.1 bits (157), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 60 GDLKGMIEKLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPL 107
GD +G+I K+ + + DLGV A+WIS ++ A GY D+ P
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
FG + DF+ L HA GIKI++DF PNHTS E
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAME 146
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 35/80 (43%)
Query: 165 DLGVGAVWIS--------------------------------PIFKSPMADFGYDISDYL 192
DLGV A+WIS P F + MADF I+
Sbjct: 68 DLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGT-MADFQNLITTAH 126
Query: 193 R--IKILLDFVPNHTSNQHE 210
IKI++DF PNHTS E
Sbjct: 127 AKGIKIVIDFAPNHTSPAME 146
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 65.1 bits (157), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 60 GDLKGMIEKLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPL 107
GD +G+I K+ + + DLGV A+WIS ++ A GY D+ P
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
FG + DF+ L HA GIKI++DF PNHTS E
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAME 146
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 35/80 (43%)
Query: 165 DLGVGAVWIS--------------------------------PIFKSPMADFGYDISDYL 192
DLGV A+WIS P F + MADF I+
Sbjct: 68 DLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGT-MADFQNLITTAH 126
Query: 193 R--IKILLDFVPNHTSNQHE 210
IKI++DF PNHTS E
Sbjct: 127 AKGIKIVIDFAPNHTSPAME 146
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 65.1 bits (157), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 60 GDLKGMIEKLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPL 107
GD +G+I K+ + + DLGV A+WIS ++ A GY D+ P
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
FG + DF+ L HA GIKI++DF PNHTS E
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAME 146
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 35/80 (43%)
Query: 165 DLGVGAVWIS--------------------------------PIFKSPMADFGYDISDYL 192
DLGV A+WIS P F + MADF I+
Sbjct: 68 DLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGT-MADFQNLITTAH 126
Query: 193 R--IKILLDFVPNHTSNQHE 210
IKI++DF PNHTS E
Sbjct: 127 AKGIKIVIDFAPNHTSPAME 146
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 65.1 bits (157), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 60 GDLKGMIEKLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPL 107
GD +G+I K+ + + DLGV A+WIS ++ A GY D+ P
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
FG + DF+ L HA GIKI++DF PNHTS E
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAME 146
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 35/80 (43%)
Query: 165 DLGVGAVWIS--------------------------------PIFKSPMADFGYDISDYL 192
DLGV A+WIS P F + MADF I+
Sbjct: 68 DLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGT-MADFQNLITTAH 126
Query: 193 R--IKILLDFVPNHTSNQHE 210
IKI++DF PNHTS E
Sbjct: 127 AKGIKIVIDFAPNHTSPAME 146
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 64.7 bits (156), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 60 GDLKGMIEKLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPL 107
GD +G+I K+ + + DLGV A+WIS ++ A GY D+ P
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTS 138
FG + DF+ L HA GIKI++DF PNHTS
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTS 142
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 35/76 (46%)
Query: 165 DLGVGAVWIS--------------------------------PIFKSPMADFGYDISDYL 192
DLGV A+WIS P F + MADF I+
Sbjct: 68 DLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGT-MADFQNLITTAH 126
Query: 193 R--IKILLDFVPNHTS 206
IKI++DF PNHTS
Sbjct: 127 AKGIKIVIDFAPNHTS 142
>pdb|2WPG|A Chain A, Sucrose Hydrolase
Length = 637
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD--FGYDISDYLSFEPLFGDLKDFET 116
G L+G+ E++P +L +LGV + + P ++ D G+ +SDY EP G D
Sbjct: 103 AGTLRGVAERVP-YLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPALGSNDDLVA 161
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
L RL A I + DFV NHT++ H W + + A Y
Sbjct: 162 LTARLRAANISLCADFVLNHTADDHAWAQAARAGDTRY 199
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 24/84 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMAD--FGYDISDY-------------------LR---IKILL 198
L +LGV + + P ++ D G+ +SDY LR I +
Sbjct: 116 LQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPALGSNDDLVALTARLRAANISLCA 175
Query: 199 DFVPNHTSNQHEWFKKSLANIPPY 222
DFV NHT++ H W + + A Y
Sbjct: 176 DFVLNHTADDHAWAQAARAGDTRY 199
>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
Enzyme W398v
Length = 637
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
GDL G+ +KL LG ++++PIFK+P + YD DY++ +P FGD +TL
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLIN 246
Query: 120 RLH--ALGIK--ILLDFVPNHTSNQHEWFKK 146
+H A G K ++LD V NHT + H WF K
Sbjct: 247 DIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 27/75 (36%)
Query: 166 LGVGAVWISPIFKSPMADFGYDISDYLRIK--------------------------ILLD 199
LG ++++PIFK+P + YD DY+ + ++LD
Sbjct: 204 LGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILD 262
Query: 200 FVPNHTSNQHEWFKK 214
V NHT + H WF K
Sbjct: 263 GVFNHTGDSHPWFDK 277
>pdb|1UH2|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-Hexaose
Complex
pdb|1UH4|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1MALTO-
Tridecaose Complex
pdb|2D0G|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P5, A Pullulan Model Oligosaccharide
pdb|2D0H|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P2, A Pullulan Model Oligosaccharide
Length = 637
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
GDL G+ +KL LG ++++PIFK+P + YD DY++ +P FGD +TL
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLIN 246
Query: 120 RLH--ALGIK--ILLDFVPNHTSNQHEWFKK 146
+H A G K ++LD V NHT + H WF K
Sbjct: 247 DIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 27/75 (36%)
Query: 166 LGVGAVWISPIFKSPMADFGYDISDYLRIK--------------------------ILLD 199
LG ++++PIFK+P + YD DY+ + ++LD
Sbjct: 204 LGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILD 262
Query: 200 FVPNHTSNQHEWFKK 214
V NHT + H WF K
Sbjct: 263 GVFNHTGDSHPWFDK 277
>pdb|2D0F|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356n Complexed With P2,
A Pullulan Model Oligosaccharide
Length = 637
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
GDL G+ +KL LG ++++PIFK+P + YD DY++ +P FGD +TL
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLIN 246
Query: 120 RLH--ALGIK--ILLDFVPNHTSNQHEWFKK 146
+H A G K ++LD V NHT + H WF K
Sbjct: 247 DIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 27/75 (36%)
Query: 166 LGVGAVWISPIFKSPMADFGYDISDYLRIK--------------------------ILLD 199
LG ++++PIFK+P + YD DY+ + ++LD
Sbjct: 204 LGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILD 262
Query: 200 FVPNHTSNQHEWFKK 214
V NHT + H WF K
Sbjct: 263 GVFNHTGDSHPWFDK 277
>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
Enzyme F313a
Length = 637
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
GDL G+ +KL LG ++++PIFK+P + YD DY++ +P FGD +TL
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLIN 246
Query: 120 RLH--ALGIK--ILLDFVPNHTSNQHEWFKK 146
+H A G K ++LD V NHT + H WF K
Sbjct: 247 DIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 27/75 (36%)
Query: 166 LGVGAVWISPIFKSPMADFGYDISDYLRIK--------------------------ILLD 199
LG ++++PIFK+P + YD DY+ + ++LD
Sbjct: 204 LGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILD 262
Query: 200 FVPNHTSNQHEWFKK 214
V NHT + H WF K
Sbjct: 263 GVFNHTGDSHPWFDK 277
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
Complex
Length = 637
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
GDL G+ +KL LG ++++PIFK+P + YD DY++ +P FGD +TL
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLIN 246
Query: 120 RLH--ALGIK--ILLDFVPNHTSNQHEWFKK 146
+H A G K ++LD V NHT + H WF K
Sbjct: 247 DIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 27/75 (36%)
Query: 166 LGVGAVWISPIFKSPMADFGYDISDYLRIK--------------------------ILLD 199
LG ++++PIFK+P + YD DY+ + ++LD
Sbjct: 204 LGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILD 262
Query: 200 FVPNHTSNQHEWFKK 214
V NHT + H WF K
Sbjct: 263 GVFNHTGDSHPWFDK 277
>pdb|3CZK|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Sucrose Complex
pdb|3CZL|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Glucose Complex
Length = 644
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD--FGYDISDYLSFEPLFGDLKDFET 116
G L+G+ E++P +L +LGV + + P ++ D G+ +SDY EP G D
Sbjct: 102 AGTLQGVAERVP-YLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVA 160
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
L RL GI + DFV NHT++ H W + + A Y
Sbjct: 161 LTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARY 198
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 24/84 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMAD--FGYDISDY-------------------LR---IKILL 198
L +LGV + + P ++ D G+ +SDY LR I +
Sbjct: 115 LQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCA 174
Query: 199 DFVPNHTSNQHEWFKKSLANIPPY 222
DFV NHT++ H W + + A Y
Sbjct: 175 DFVLNHTADDHAWAQAARAGDARY 198
>pdb|3CZE|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Tris Complex
pdb|3CZG|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Glucose Complex
Length = 644
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD--FGYDISDYLSFEPLFGDLKDFET 116
G L+G+ E++P +L +LGV + + P ++ D G+ +SDY EP G D
Sbjct: 102 AGTLQGVAERVP-YLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVA 160
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
L RL GI + DFV NHT++ H W + + A Y
Sbjct: 161 LTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARY 198
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 24/84 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMAD--FGYDISDY-------------------LR---IKILL 198
L +LGV + + P ++ D G+ +SDY LR I +
Sbjct: 115 LQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCA 174
Query: 199 DFVPNHTSNQHEWFKKSLANIPPY 222
DFV NHT++ H W + + A Y
Sbjct: 175 DFVLNHTADDHAWAQAARAGDARY 198
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 62.8 bits (151), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKS--------PMADFGYDISDYLSFEPLFGDL 111
GDL+G+ +KLP +L LGV +W+SP+ + GY D+ E FG+
Sbjct: 49 GDLEGVRQKLP-YLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNW 107
Query: 112 KDFETLKERLHALGIKILLDFVPNHTS 138
F+TL H GIK+++DFVPNH++
Sbjct: 108 TTFDTLVNDAHQNGIKVIVDFVPNHST 134
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 25/144 (17%)
Query: 31 IQEPLEWWQTSVFYHLYPRSFKDS----------------------NGDGVGDLKGMIEK 68
IQ P +W + +VFY ++P F S G GDL G++E
Sbjct: 3 IQTP-DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMED 61
Query: 69 LPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKI 128
L +++ +LG+ A++ +PIF+S ++ Y DY +P+ G + F+ L + H IK+
Sbjct: 62 L-DYIQNLGINAIYFTPIFQS-ASNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKV 119
Query: 129 LLDFVPNHTSNQHEWFKKSLANIP 152
+LD V NH+S +F L N P
Sbjct: 120 VLDGVFNHSSRGFFFFHDVLENGP 143
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 29/102 (28%)
Query: 147 SLANIPPYKCASL------LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR------- 193
S+ + YK L L + +LG+ A++ +PIF+S ++ Y DY +
Sbjct: 43 SMPTLQGYKGGDLWGIMEDLDYIQNLGINAIYFTPIFQS-ASNHRYHTHDYYQVDPMLGG 101
Query: 194 ---------------IKILLDFVPNHTSNQHEWFKKSLANIP 220
IK++LD V NH+S +F L N P
Sbjct: 102 NEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGP 143
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 23/121 (19%)
Query: 39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG--- 95
+ + Y ++ R++ ++ G+ G+ L + + DLG +W+ PI +P+ +
Sbjct: 11 RNEMIYSVFVRNYSEA-----GNFAGVTADL-QRIKDLGTDILWLLPI--NPIGEVNRKG 62
Query: 96 -----YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS------NQH-EW 143
Y I DY P +G L DF+ L +R H LG+K++LD V NHTS +H EW
Sbjct: 63 TLGSPYAIKDYRGINPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSVLATEHPEW 122
Query: 144 F 144
F
Sbjct: 123 F 123
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 39/90 (43%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFG--------YDISDY-------------------- 191
L R+ DLG +W+ PI +P+ + Y I DY
Sbjct: 36 LQRIKDLGTDILWLLPI--NPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRA 93
Query: 192 --LRIKILLDFVPNHTS------NQH-EWF 212
L +K++LD V NHTS +H EWF
Sbjct: 94 HELGMKVMLDIVYNHTSPDSVLATEHPEWF 123
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 12/119 (10%)
Query: 37 WWQTSVFYHLYPRSFKDSNG-DGV---------GDLKGMIEKLPEHLHDLGVGAVWISPI 86
W VFY + P F S G+ GDL G+ EK+ +HL +LG+ A++++PI
Sbjct: 203 WVIDRVFYQIMPDKFARSRKIQGIAYPKDKYWGGDLIGIKEKI-DHLVNLGINAIYLTPI 261
Query: 87 FKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145
F S + GYDI DY G + F L L IK++LD V +HTS H +F+
Sbjct: 262 F-SSLTYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQ 319
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 23/73 (31%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
L +LG+ A++++PIF S + GYDI DY IK++LD
Sbjct: 248 LVNLGINAIYLTPIF-SSLTYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDG 306
Query: 201 VPNHTSNQHEWFK 213
V +HTS H +F+
Sbjct: 307 VFHHTSFFHPYFQ 319
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 60.1 bits (144), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 60 GDLKGMIEKLPE-HLHDLGVGAVWIS-PI-----------FKSPMADFGYDISDYLSFEP 106
GD +G+I K+ + +L +GV A+WIS P+ F + GY D+ P
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNP 111
Query: 107 LFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
FG DF+ L HA IK+++DF PNHTS E
Sbjct: 112 YFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASE 147
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 34/82 (41%)
Query: 163 LHDLGVGAVWIS-PI-----------FKSPMADFGYDISDYLR----------------- 193
L +GV A+WIS P+ F + GY D+ R
Sbjct: 66 LTGMGVTAIWISQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINT 125
Query: 194 -----IKILLDFVPNHTSNQHE 210
IK+++DF PNHTS E
Sbjct: 126 AHAHNIKVIIDFAPNHTSPASE 147
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 59.7 bits (143), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 59.3 bits (142), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +G+
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G ++DF+ L + HA IK
Sbjct: 72 TAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 181 MADFG--YDISDYLRIKILLDFVPNHTS 206
M DF D + IK+++DF PNHTS
Sbjct: 115 MQDFKNLIDTAHAHNIKVIIDFAPNHTS 142
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 59.3 bits (142), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +G+
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G ++DF+ L + HA IK
Sbjct: 72 TAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 181 MADFG--YDISDYLRIKILLDFVPNHTS 206
M DF D + IK+++DF PNHTS
Sbjct: 115 MQDFKNLIDTAHAHNIKVIIDFAPNHTS 142
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 59.3 bits (142), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 59.3 bits (142), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 59.3 bits (142), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +G+
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G ++DF+ L + HA IK
Sbjct: 72 TAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
Score = 28.1 bits (61), Expect = 4.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 181 MADFG--YDISDYLRIKILLDFVPNHTS 206
M DF D + IK+++DF PNHTS
Sbjct: 115 MQDFKNLIDTAHAHNIKVIIDFAPNHTS 142
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +G+
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G ++DF+ L + HA IK
Sbjct: 72 TAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
Score = 28.1 bits (61), Expect = 4.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 181 MADFG--YDISDYLRIKILLDFVPNHTS 206
M DF D + IK+++DF PNHTS
Sbjct: 115 MQDFKNLIDTAHAHNIKVIIDFAPNHTS 142
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +G+
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G ++DF+ L + HA IK
Sbjct: 72 TAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 181 MADFG--YDISDYLRIKILLDFVPNHTS 206
M DF D + IK+++DF PNHTS
Sbjct: 115 MQDFKNLIDTAHAHNIKVIIDFAPNHTS 142
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINDSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
Score = 27.3 bits (59), Expect = 6.3, Method: Composition-based stats.
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 194 IKILLDFVPNHTS 206
IK+++DF PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 58.9 bits (141), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFNDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
Score = 27.3 bits (59), Expect = 6.3, Method: Composition-based stats.
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 194 IKILLDFVPNHTS 206
IK+++DF PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 23/124 (18%)
Query: 37 WWQTSVFYHLYPRSF---------------------KDSNGDGVGDLKGMIEKLPEHLHD 75
W++ + FY ++P F G G L G+ EKLP +L D
Sbjct: 3 WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLP-YLLD 61
Query: 76 LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN 135
LGV A++++P+F S A+ Y DY +P+ G + L E HA G++++LD V N
Sbjct: 62 LGVEAIYLNPVFAS-TANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVFN 120
Query: 136 HTSN 139
HT
Sbjct: 121 HTGR 124
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 154 YKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRIKILL 198
+ A L L DLGV A++++P+F S A+ Y DY ++ +L
Sbjct: 50 WGVAEKLPYLLDLGVEAIYLNPVFAS-TANHRYHTVDYFQVDPIL 93
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 58.2 bits (139), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 60 GDLKGMIEKLPE-HLHDLGVGAVWI-SPI-----------FKSPMADFGYDISDYLSFEP 106
GD +G+I K+ + +L +GV A+WI P+ F + GY D+ P
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNP 111
Query: 107 LFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
FG DF+ L HA IK+++DF PNHTS E
Sbjct: 112 YFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASE 147
Score = 27.7 bits (60), Expect = 5.0, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 194 IKILLDFVPNHTSNQHE 210
IK+++DF PNHTS E
Sbjct: 131 IKVIIDFAPNHTSPASE 147
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 57.4 bits (137), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
++++F PNHTS
Sbjct: 132 VIINFAPNHTS 142
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 57.0 bits (136), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +G+
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79 GAVWISPIFKSPMADFGYD-----------ISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS ++ + Y D+ P +G ++DF+ L + HA IK
Sbjct: 72 TAIWISQPVENIYSVINYSGVNNTAYHGLWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
+++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 181 MADFG--YDISDYLRIKILLDFVPNHTS 206
M DF D + IK+++DF PNHTS
Sbjct: 115 MQDFKNLIDTAHAHNIKVIIDFAPNHTS 142
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 56.2 bits (134), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 30/131 (22%)
Query: 38 WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
+ T V Y ++ F D N DG GD +G+I K+ + +L +GV
Sbjct: 12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79 GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
A+WIS P+ + A GY D+ P +G + DF+ L HA IK
Sbjct: 72 TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
+++ F PNHTS
Sbjct: 132 VIIAFAPNHTS 142
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 28 DVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIF 87
++P Q+ WW T Y + + G G G+L G+ +L ++L L V + + PI
Sbjct: 6 ELPAQK---WWHTGALYRI--GDLQAFQGHGAGNLAGLKGRL-DYLSSLKVKGLVLGPIH 59
Query: 88 KSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
K+ D +D L +P FG +DF++L + I+++LD PN+ ++ WF
Sbjct: 60 KNQKDDVAQ--TDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYR-GENSWFSTQ 116
Query: 148 LANI 151
+ +
Sbjct: 117 VDTV 120
>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 28 DVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIF 87
++P Q+ WW T Y + + G G G+L G+ +L ++L L V + + PI
Sbjct: 6 ELPAQK---WWHTGALYRI--GDLQAFQGHGAGNLAGLKGRL-DYLSSLKVKGLVLGPIH 59
Query: 88 KSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
K+ D +D L +P FG +DF++L + I+++LD PN+ ++ WF
Sbjct: 60 KNQKDDVAQ--TDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYR-GENSWFSTQ 116
Query: 148 LANI 151
+ +
Sbjct: 117 VDTV 120
>pdb|1IV8|A Chain A, Crystal Structure Of Maltooligosyl Trehalose Synthase
Length = 720
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 72 HLHDLGVGAVWISPIF-KSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130
+ DLGV +++SP+ SP ++ GYD+ D+ G K++ L E H +G+ I+
Sbjct: 25 YFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQ 84
Query: 131 DFVPNHTS-NQHEW 143
D VPNH + N W
Sbjct: 85 DIVPNHMAVNSLNW 98
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 34 PLEWWQTSVFYHLYPRSFKDSNGDGV------------GDLKGMIEKLPEHLHDLGVGAV 81
P +W S+++ L R F ++G G +G+I+KL +++ +G A+
Sbjct: 3 PADWRSQSIYFLLTDR-FARTDGSTTATCNTADQKYCGGTWQGIIDKL-DYIQGMGFTAI 60
Query: 82 WISPIFKSPMADF-------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134
WI+P+ D GY +D S +G D + L LH G+ +++D V
Sbjct: 61 WITPVTAQLPQDCAYGDAYTGYWQTDIYSLNENYGTADDLKALSSALHERGMYLMVDVVA 120
Query: 135 NH 136
NH
Sbjct: 121 NH 122
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 42 VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPI----FKSPMADFG-- 95
+ Y + R++ G L EK E L +G+ VW+ PI + G
Sbjct: 7 IIYEAFARAYPGEKGKKFLSL----EKDLERLKGMGINTVWLMPIHPTGVEGRKGTLGSP 62
Query: 96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS------NQH-EWFKKSL 148
Y I DY + L G DF+ +R H L + +L+D V NH + +H EWF +
Sbjct: 63 YAIRDYYEIDLLIGTKGDFKKFVKRAHELNMYVLMDMVLNHAAVDNVLVKKHPEWFLRDE 122
Query: 149 ANIPPYKC 156
P K
Sbjct: 123 NGNPTRKV 130
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 34 PLEWWQTSVFYHLYPRSFKDSNGDGV------------GDLKGMIEKLPEHLHDLGVGAV 81
P +W S+++ L R F ++G G +G+I+KL +++ +G A+
Sbjct: 3 PADWRSQSIYFLLTDR-FARTDGSTTATCNTADQKYCGGTWQGIIDKL-DYIQGMGFTAI 60
Query: 82 WISPIFKS-PM------ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134
WI+P+ P A GY D S +G D + L LH G+ +++D V
Sbjct: 61 WITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVA 120
Query: 135 NH 136
NH
Sbjct: 121 NH 122
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFETLK 118
G +G+I KL ++L DLG+ A+ I PI + P D+GYD + + +G + F L
Sbjct: 116 GTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLV 174
Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKK 146
+ H G+ ++LD V NH + + K
Sbjct: 175 DEAHKKGLGVILDVVYNHVGPEGNYMVK 202
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFETLK 118
G +G+I KL ++L DLG+ A+ I PI + P D+GYD + + +G + F L
Sbjct: 116 GTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLV 174
Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKK 146
+ H G+ ++LD V NH + + K
Sbjct: 175 DEAHKKGLGVILDVVYNHVGPEGNYMVK 202
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFETLK 118
G +G+I KL ++L DLG+ A+ I PI + P D+GYD + + +G + F L
Sbjct: 116 GTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLV 174
Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKK 146
+ H G+ ++LD V NH + + K
Sbjct: 175 DEAHKKGLGVILDVVYNHVGPEGNYMVK 202
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFETLK 118
G +G+I KL ++L DLG+ A+ I PI + P D+GYD + + +G + F L
Sbjct: 116 GTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLV 174
Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKK 146
+ H G+ ++LD V NH + + K
Sbjct: 175 DEAHKKGLGVILDVVYNHVGPEGNYMVK 202
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFETLK 118
G +G+I KL ++L DLG+ A+ I PI + P D+GYD + + +G + F L
Sbjct: 116 GTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLV 174
Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKK 146
+ H G+ ++LD V NH + + K
Sbjct: 175 DEAHKKGLGVILDVVYNHVGPEGNYMVK 202
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 71 EHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129
++ +LGV +++SP+ K+ P + GYD+ DY + G +++ L + + G+ I+
Sbjct: 22 DYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLGII 81
Query: 130 LDFVPNHTSNQH 141
D VPNH + H
Sbjct: 82 QDIVPNHMAVHH 93
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 44.3 bits (103), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMA-DFGYDISDYLSFEPLFGDLKDFETLKERL 121
+ + +L +++ D G V + P+ + P A +GY ++ Y + FG DF L + L
Sbjct: 263 RQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFRALVDAL 322
Query: 122 HALGIKILLDFVPNH 136
H GI +++D+VP H
Sbjct: 323 HQAGIGVIVDWVPAH 337
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF-------GYDISDYLSFEPLFGDLK 112
G +G+I+ L +++ +G A+WISPI + D GY FG
Sbjct: 40 GSWQGIIDHL-DYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTAD 98
Query: 113 DFETLKERLHALGIKILLDFVPNH 136
+ ++L + LHA G+ +++D VP+H
Sbjct: 99 NLKSLSDALHARGMYLMVDVVPDH 122
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 67 EKLPEHLHDLGVGAVWISPIFKSPMADF--GYDISDYL---------SFEPLFGDLKDFE 115
+K+PE +D G+ A+WI P K + GYD D+ + E FG ++
Sbjct: 32 QKIPE-WYDAGISAIWIPPASKGMGGAYSMGYDPYDFFDLGEYDQKGTVETRFGSKQELV 90
Query: 116 TLKERLHALGIKILLDFVPNHTS 138
+ HA G+K++ D V NH +
Sbjct: 91 NMINTAHAYGMKVIADIVINHRA 113
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 42 VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISD 100
VFY ++ +F G + EKLP +L +LGV A+ + P+ +GYD +
Sbjct: 128 VFYEVHVGTFTPE-----GTYRAAAEKLP-YLKELGVTAIQVXPLAAFDGQRGWGYDGAA 181
Query: 101 YLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
+ + +G +D L + H LG+ + LD V NH
Sbjct: 182 FYAPYAPYGRPEDLXALVDAAHRLGLGVFLDVVYNH 217
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGY 96
W+ +V Y ++ +F G + I KLP +L +LGV + + P+ + +GY
Sbjct: 134 WEQAVVYEMHTGTFTPE-----GTFRAAIAKLP-YLAELGVTVIEVMPVAQFGGERGWGY 187
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
D + +G DF+ + H G+ ++LD V NH
Sbjct: 188 DGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNH 227
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 71 EHLHDLGVGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
+++ LG +W +P+ ++ A + GY +D+ +P +G +DF L G+
Sbjct: 155 DYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMG 214
Query: 128 ILLDFVPNHTSNQHEWFK 145
++ D V +H H W K
Sbjct: 215 LIQDVVLSHIGKHHWWMK 232
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 71 EHLHDLGVGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
+++ LG +W +P+ ++ A + GY +D+ +P +G +DF L G+
Sbjct: 155 DYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMG 214
Query: 128 ILLDFVPNHTSNQHEWFK 145
++ D V +H H W K
Sbjct: 215 LIQDVVLSHIGKHHWWMK 232
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 71 EHLHDLGVGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
+++ LG +W +P+ ++ A + GY +D+ +P +G +DF L G+
Sbjct: 155 DYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMG 214
Query: 128 ILLDFVPNHTSNQHEWFK 145
++ D V +H H W K
Sbjct: 215 LIQDVVLSHIGKHHWWMK 232
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 68 KLPEHLHDLGVGAVWISPIFKSPMADF--GYDISDYL---------SFEPLFGDLKDFET 116
K+PE ++ G+ A+W+ P K + GYD DY + E FG ++
Sbjct: 33 KIPE-WYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVR 91
Query: 117 LKERLHALGIKILLDFVPNHTSN 139
L + HA GIK++ D V NH +
Sbjct: 92 LIQTAHAYGIKVIADVVINHRAG 114
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 42 VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISD 100
VFY ++ +F G + EKLP +L +LGV A+ + P+ +GYD +
Sbjct: 128 VFYEVHVGTFTPE-----GTYRAAAEKLP-YLKELGVTAIQVMPLAAFDGQRGWGYDGAA 181
Query: 101 YLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
+ + +G +D L + H LG+ + LD V NH
Sbjct: 182 FYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNH 217
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 89 SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQ 140
S A FGY ++++ + G +D + L ++ H+LG+++L+D V +H SN
Sbjct: 228 SYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNN 279
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 89 SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQ 140
S A FGY ++++ + G +D + L ++ H+LG+++L+D V +H SN
Sbjct: 228 SYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNN 279
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 71 EHLHDLGVGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
+++ LG +W +P+ ++ A + GY +D+ +P +G +DF L G
Sbjct: 155 DYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGXG 214
Query: 128 ILLDFVPNHTSNQHEWFK 145
++ D V +H H W K
Sbjct: 215 LIQDVVLSHIGKHHWWXK 232
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 22/122 (18%)
Query: 39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPE-----HLHDLGVGAVWISPIF------ 87
+ +V Y ++ + F D +++G E L +L DLG+ V + P+F
Sbjct: 172 KDTVIYEVHVKGFTKLRLDLPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQR 231
Query: 88 ----KSPMADFGYDISDYLSFEPLF-------GDLKDFETLKERLHALGIKILLDFVPNH 136
K +GYD ++ S E + G + F+ + LH GI++++D V NH
Sbjct: 232 FLTDKGLTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNH 291
Query: 137 TS 138
T+
Sbjct: 292 TA 293
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 66 IEKLPEHLHDLGVGAVWISPIFKS-PMADFG---YDISDYLSFE------PLFGDLKDFE 115
++ EHL D+G+ AVWI P +K +D G YD+ D F+ +G + +
Sbjct: 23 LQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQ 82
Query: 116 TLKERLHALGIKILLDFVPNHTS 138
LH+ +++ D V NH +
Sbjct: 83 DAIGSLHSRNVQVYGDVVLNHKA 105
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 66 IEKLPEHLHDLGVGAVWISPIFKS-PMADFG---YDISDYLSFE------PLFGDLKDFE 115
++ EHL D+G+ AVWI P +K +D G YD+ D F+ +G + +
Sbjct: 23 LQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQ 82
Query: 116 TLKERLHALGIKILLDFVPNHTS 138
LH+ +++ D V NH +
Sbjct: 83 DAIGSLHSRNVQVYGDVVLNHKA 105
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 38/168 (22%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGVG-----DLKGMIEK--------LPEHLHDLGVGAVW 82
+W + SV Y PR+ N G G D+ G E L + LG A++
Sbjct: 79 DWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIY 138
Query: 83 ISPI------FKSPMADFGYDISDYLSFEPLFGDL--------KDFETLKERLHALGIKI 128
+ P+ FK A Y + + + + + D ++F+ E H LGI++
Sbjct: 139 LLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRV 198
Query: 129 LLDFVPNHTSNQHE----------WFK-KSLANIPPYKCASLLARLHD 165
+LDF+P + + W K + LA+ P + L ++ D
Sbjct: 199 ILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRAEELPFKVPD 246
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 35.8 bits (81), Expect = 0.017, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 23/134 (17%)
Query: 33 EPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKL---PEHLHDLGVGAVWISPIFKS 89
+P + V Y ++ R F + + +G +L LGV AV P+ ++
Sbjct: 171 KPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQET 230
Query: 90 --------PMAD-----FGYDISDYLSFEPLF-------GDLKDFETLKERLHALGIKIL 129
P +D +GY +Y S + + G +F+ + + H GIK+
Sbjct: 231 QNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVY 290
Query: 130 LDFVPNHTSNQHEW 143
+D V NHT+ W
Sbjct: 291 MDVVYNHTAEGGTW 304
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 35.4 bits (80), Expect = 0.024, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 28/106 (26%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFK----------SPMADF---------GYDISD 100
G + IEKL ++L DLGV + + P+ ++D+ GYD +
Sbjct: 178 GTFEAFIEKL-DYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQN 236
Query: 101 YLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTS 138
Y S ++ + +F+ L +H G+ +LD V NHT+
Sbjct: 237 YFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTA 282
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 35.4 bits (80), Expect = 0.024, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 28/106 (26%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFK----------SPMADF---------GYDISD 100
G + IEKL ++L DLGV + + P+ ++D+ GYD +
Sbjct: 177 GTFEAFIEKL-DYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQN 235
Query: 101 YLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTS 138
Y S ++ + +F+ L +H G+ +LD V NHT+
Sbjct: 236 YFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTA 281
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 35.0 bits (79), Expect = 0.031, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 28/106 (26%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFK----------SPMADF---------GYDISD 100
G + IEKL ++L DLGV + + P+ ++D+ GYD +
Sbjct: 484 GTFEAFIEKL-DYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQN 542
Query: 101 YLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTS 138
Y S ++ + +F+ L +H G+ +LD V NHT+
Sbjct: 543 YFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTA 588
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 73 LHDLGVGAVWISPIFKSPMADFG----------YDISDYLSFEPLFGDLKDFETLKERLH 122
+HD G A+ SPI + + G Y + Y G ++F+ +
Sbjct: 29 IHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAE 88
Query: 123 ALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
GIK+++D V NHT+ + + +IP +
Sbjct: 89 EYGIKVIVDAVINHTTFDYAAISNEVKSIPNW 120
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 73 LHDLGVGAVWISPIFKSPMADFG----------YDISDYLSFEPLFGDLKDFETLKERLH 122
+HD G A+ SPI + + G Y + Y G ++F+ +
Sbjct: 26 IHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAE 85
Query: 123 ALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
GIK+++D V NHT+ + + +IP +
Sbjct: 86 EYGIKVIVDAVINHTTFDYAAISNEVKSIPNW 117
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 73 LHDLGVGAVWISPIFKSPMADFG----------YDISDYLSFEPLFGDLKDFETLKERLH 122
+HD G A+ SPI + + G Y + Y G ++F+ +
Sbjct: 26 IHDAGYTAIQTSPINQVKEGNKGDKSMGNWYWLYQPTSYQIGNRYLGSEEEFKEMCAAAE 85
Query: 123 ALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
G+K+++D V NHT++ + + +I +
Sbjct: 86 EYGVKVIVDAVINHTTSDYAAISNEIKSISNW 117
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 33/135 (24%)
Query: 39 QTSVFYHLYPRSF-KDSNGDG-----VGDLKGMIEKLPEHLHDLGVGAVWISPIF----- 87
Q +V Y + R F D + DG +G EKL ++L LGV + + P+
Sbjct: 266 QDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKL-DYLQKLGVTHIQLLPVLSYFYV 324
Query: 88 ----KSPMA---------DFGYDISDYLSFEPLFGD--------LKDFETLKERLHALGI 126
KS ++GYD Y + ++ + + + + L +H G+
Sbjct: 325 NEMDKSRSTAYTSSDNNYNWGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGM 384
Query: 127 KILLDFVPNHTSNQH 141
++LD V NHT+ +
Sbjct: 385 GVILDVVYNHTAKTY 399
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 76 LGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134
+G + + PI + P +GY + + FG DF + HA G+ ++LD+VP
Sbjct: 168 MGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVP 227
Query: 135 NH 136
H
Sbjct: 228 GH 229
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISDYL---------SFEPLFG 109
G L + +L LG+ A+W+ P +K + +D GY + D + +G
Sbjct: 20 GTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYG 79
Query: 110 DLKDFETLKERLHALGIKILLDFVPNH 136
+ + HA G+++ D V +H
Sbjct: 80 TKAQYLQAIQAAHAAGMQVYADVVFDH 106
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 155 KCASLLARLHDLGVGAVWISPIFK-SPMADFGYDISD 190
K A+ L LG+ A+W+ P +K + +D GY + D
Sbjct: 25 KVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYD 61
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 77 GVGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPN 135
G+ VW+ P +S +A+ GY + +G+ ++L LH G+K + D V N
Sbjct: 33 GITHVWLPPASQS-VAEQGYMPGRLYDLDASKYGNKAQLKSLIGALHGKGVKAIADIVIN 91
Query: 136 HTSNQHE 142
H + +H+
Sbjct: 92 HRTAEHK 98
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 65 MIEKLPEHLHDLGVGAVWISPIFK--SPMADFGY---DISDYLSFE------PLFGDLKD 113
+ E+ PE L + G AVW+ P K + + D GY D+ D F+ +G +
Sbjct: 152 LAERAPE-LAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGE 210
Query: 114 FETLKERLHALGIKILLDFVPNH 136
E + LH IK+ D V NH
Sbjct: 211 LENAIDALHNNDIKVYFDAVLNH 233
>pdb|2KZW|A Chain A, Solution Nmr Structure Of Q8psa4 From Methanosarcina
Mazei, Northeast Structural Genomics Consortium Target
Mar143a
Length = 145
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 22/84 (26%)
Query: 52 KDSNGDGVGDL-------KGMIEKLP--EHLHDLGVGAVWISPIFKSPMADFGYDISDYL 102
D NGDG+GD G ++ +P E+LH SP+ P A F DI++
Sbjct: 25 SDENGDGIGDSAYAVNPEAGSMDYMPLMEYLHS--------SPVL--PTARFTSDITE-- 72
Query: 103 SFEPLFGDLKDF-ETLKERLHALG 125
F PL KDF E RL G
Sbjct: 73 GFAPLSVRFKDFSENATSRLWMFG 96
>pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38)
pdb|1UD4|A Chain A, Crystal Structure Of Calcium Free Alpha Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38, In Calcium
Containing Solution)
pdb|1UD5|A Chain A, Crystal Structure Of Amyk38 With Rubidium Ion
pdb|1UD6|A Chain A, Crystal Structure Of Amyk38 With Potassium Ion
pdb|1UD8|A Chain A, Crystal Structure Of Amyk38 With Lithium Ion
Length = 480
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 73 LHDLGVGAVWISPIFK-SPMADFG---YDISDYLSF------EPLFGDLKDFETLKERLH 122
L D G+ A+WI P +K + AD G YD+ D F +G E L
Sbjct: 32 LSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLK 91
Query: 123 ALGIKILLDFVPNH 136
+ I + D V NH
Sbjct: 92 SNDINVYGDVVMNH 105
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 161 ARLHDLGVGAVWISPIFK-SPMADFGYDISD 190
A L D G+ A+WI P +K + AD GY D
Sbjct: 30 AALSDAGITAIWIPPAYKGNSQADVGYGAYD 60
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 73 LHDLGVGAVWISPIFK-SPMADFG---YDISDYLSF------EPLFGDLKDFETLKERLH 122
L D G+ A+WI P +K + AD G YD+ D F +G E L
Sbjct: 32 LSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLK 91
Query: 123 ALGIKILLDFVPNH 136
+ I + D V NH
Sbjct: 92 SNDINVYGDVVMNH 105
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 161 ARLHDLGVGAVWISPIFK-SPMADFGYDISD 190
A L D G+ A+WI P +K + AD GY D
Sbjct: 30 AALSDAGITAIWIPPAYKGNSQADVGYGAYD 60
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 23/143 (16%)
Query: 16 CIHLSVGFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLP----- 70
C+ + + + D P + P W +++ Y + + + + +++G + L
Sbjct: 129 CVVVVDHYDWEDDAPPRTP---WGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMI 185
Query: 71 EHLHDLGVGAVWISPI--FKSPMADFGYDISDYLSFEPLF-------------GDLKDFE 115
+L LG+ A+ + P+ F S +S+Y + P+ L +F
Sbjct: 186 NYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFR 245
Query: 116 TLKERLHALGIKILLDFVPNHTS 138
+ LH GI+++LD V NH++
Sbjct: 246 DAIKALHKAGIEVILDIVLNHSA 268
>pdb|3ZSS|A Chain A, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|B Chain B, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|C Chain C, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|D Chain D, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZST|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZST|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZT5|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT6|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT7|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
Length = 695
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 103 SFEPLFGDLKDFETLKERLHALGIKILLDFV----PNH--TSNQHEWF 144
S P G L DF+ LG++I LDF P+H EWF
Sbjct: 312 SIHPALGTLDDFDHFVTEAGKLGLEIALDFALQCSPDHPWVHKHPEWF 359
>pdb|1XOC|A Chain A, The Structure Of The Oligopeptide-Binding Protein, Appa,
From Bacillus Subtilis In Complex With A Nonapeptide
Length = 520
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 19 LSVGFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKG 64
LS + +D+DVP E+ + L +KD+NGDG+ D G
Sbjct: 315 LSWNYPKDIDVP---KFEYNEKKAKQMLAEAGWKDTNGDGILDKDG 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,662,970
Number of Sequences: 62578
Number of extensions: 342417
Number of successful extensions: 1105
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 245
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)