Query psy8670
Match_columns 224
No_of_seqs 232 out of 2315
Neff 7.8
Searched_HMMs 46136
Date Sat Aug 17 00:44:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10933 trehalose-6-phosphate 100.0 1.6E-38 3.4E-43 296.3 16.6 159 34-193 4-180 (551)
2 TIGR02403 trehalose_treC alpha 100.0 8E-38 1.7E-42 291.5 16.4 156 37-193 1-173 (543)
3 TIGR02456 treS_nterm trehalose 100.0 9.8E-37 2.1E-41 284.2 16.7 157 36-193 1-177 (539)
4 PRK10785 maltodextrin glucosid 100.0 2.3E-36 5E-41 284.4 15.5 154 32-193 113-309 (598)
5 COG0366 AmyA Glycosidases [Car 100.0 5.9E-32 1.3E-36 248.5 15.9 159 41-200 1-186 (505)
6 KOG0471|consensus 100.0 6.4E-32 1.4E-36 251.4 11.2 159 34-193 11-192 (545)
7 PF00128 Alpha-amylase: Alpha 100.0 1.5E-31 3.2E-36 230.2 9.7 133 60-193 1-148 (316)
8 PRK13840 sucrose phosphorylase 100.0 2.8E-30 6.2E-35 235.9 14.9 149 39-200 2-181 (495)
9 PRK09505 malS alpha-amylase; R 100.0 6.1E-29 1.3E-33 235.5 15.7 110 29-139 178-319 (683)
10 TIGR03852 sucrose_gtfA sucrose 100.0 1.6E-29 3.5E-34 229.8 10.4 144 47-200 4-177 (470)
11 smart00642 Aamy Alpha-amylase 100.0 2.3E-28 4.9E-33 195.7 10.6 94 45-139 1-97 (166)
12 PRK12313 glycogen branching en 100.0 1.1E-27 2.3E-32 227.3 15.6 106 38-143 145-251 (633)
13 TIGR02402 trehalose_TreZ malto 99.9 2.2E-27 4.8E-32 221.2 14.2 102 38-145 91-193 (542)
14 TIGR02455 TreS_stutzeri trehal 99.9 8.7E-27 1.9E-31 215.4 14.8 168 39-218 50-290 (688)
15 PRK05402 glycogen branching en 99.9 2.7E-26 5.8E-31 220.5 15.6 107 38-144 239-347 (726)
16 PRK03705 glycogen debranching 99.9 2.3E-26 5E-31 217.7 14.0 144 38-193 148-315 (658)
17 TIGR01515 branching_enzym alph 99.9 4.5E-26 9.6E-31 215.4 14.9 104 37-145 135-239 (613)
18 TIGR02100 glgX_debranch glycog 99.9 4.1E-26 8.9E-31 217.3 14.5 149 37-193 152-320 (688)
19 PRK12568 glycogen branching en 99.9 7.7E-25 1.7E-29 207.7 14.5 104 38-141 244-348 (730)
20 PLN02960 alpha-amylase 99.9 1.2E-24 2.5E-29 207.7 15.6 143 37-193 392-535 (897)
21 PRK14706 glycogen branching en 99.9 1.9E-24 4E-29 204.3 16.2 106 39-144 143-249 (639)
22 PRK14510 putative bifunctional 99.9 6.2E-25 1.3E-29 219.5 13.2 106 38-144 156-279 (1221)
23 PLN00196 alpha-amylase; Provis 99.9 5.8E-24 1.3E-28 192.8 17.6 99 39-142 23-122 (428)
24 PRK09441 cytoplasmic alpha-amy 99.9 1.3E-24 2.9E-29 200.2 13.4 102 39-145 2-116 (479)
25 PRK14705 glycogen branching en 99.9 2.9E-24 6.3E-29 212.5 15.4 138 38-193 745-883 (1224)
26 TIGR02104 pulA_typeI pullulana 99.9 2.7E-24 5.8E-29 203.1 11.1 107 38-145 125-263 (605)
27 TIGR02401 trehalose_TreY malto 99.9 6.1E-24 1.3E-28 203.0 13.5 103 59-162 12-120 (825)
28 PLN02447 1,4-alpha-glucan-bran 99.9 3.1E-23 6.6E-28 197.3 14.6 141 39-193 228-369 (758)
29 PRK14511 maltooligosyl trehalo 99.9 3.5E-23 7.5E-28 198.7 13.6 100 59-159 16-121 (879)
30 TIGR02102 pullulan_Gpos pullul 99.9 2E-23 4.3E-28 205.4 12.2 104 38-142 449-585 (1111)
31 PLN02361 alpha-amylase 99.9 1.1E-22 2.4E-27 182.7 14.1 93 40-139 11-103 (401)
32 PRK14507 putative bifunctional 99.9 8.6E-23 1.9E-27 206.0 13.3 112 42-162 745-862 (1693)
33 COG0296 GlgB 1,4-alpha-glucan 99.9 2.5E-22 5.5E-27 187.1 12.2 105 38-145 142-247 (628)
34 PLN02784 alpha-amylase 99.9 5.2E-22 1.1E-26 189.0 14.2 149 40-193 498-652 (894)
35 PLN02877 alpha-amylase/limit d 99.9 7.1E-22 1.5E-26 191.2 14.2 121 38-161 337-514 (970)
36 COG1523 PulA Type II secretory 99.9 2.6E-22 5.7E-27 189.5 9.5 103 38-141 169-294 (697)
37 TIGR02103 pullul_strch alpha-1 99.8 4.7E-21 1E-25 185.6 12.4 119 38-159 250-449 (898)
38 COG3280 TreY Maltooligosyl tre 99.8 1.1E-20 2.5E-25 175.5 9.5 120 60-180 16-141 (889)
39 KOG0470|consensus 99.8 8.4E-20 1.8E-24 169.9 9.6 102 40-141 229-340 (757)
40 TIGR01531 glyc_debranch glycog 99.7 4.2E-18 9.2E-23 168.4 10.0 88 59-147 128-220 (1464)
41 PF14701 hDGE_amylase: glucano 99.5 2E-13 4.4E-18 122.6 9.5 87 59-146 18-111 (423)
42 PLN03244 alpha-amylase; Provis 99.3 1.3E-11 2.9E-16 117.3 11.6 111 40-193 400-510 (872)
43 KOG2212|consensus 99.2 6.9E-11 1.5E-15 102.7 6.9 91 37-139 25-122 (504)
44 TIGR03852 sucrose_gtfA sucrose 98.9 1.2E-09 2.5E-14 100.2 4.4 56 167-223 30-104 (470)
45 KOG3625|consensus 98.9 2.8E-09 6.1E-14 101.9 5.9 89 59-148 138-233 (1521)
46 PRK13840 sucrose phosphorylase 98.8 2.3E-09 5E-14 98.9 1.7 59 164-223 31-109 (495)
47 PRK10933 trehalose-6-phosphate 98.6 1.6E-08 3.4E-13 95.1 1.1 63 161-223 40-124 (551)
48 TIGR02403 trehalose_treC alpha 98.5 2E-08 4.4E-13 94.3 1.2 63 161-223 34-118 (543)
49 TIGR02456 treS_nterm trehalose 98.5 4.7E-08 1E-12 91.8 1.6 58 161-218 35-114 (539)
50 COG0366 AmyA Glycosidases [Car 98.5 5.9E-08 1.3E-12 89.4 1.7 60 161-220 36-117 (505)
51 PRK10785 maltodextrin glucosid 98.4 9.4E-08 2E-12 90.8 1.4 58 160-218 185-264 (598)
52 TIGR02455 TreS_stutzeri trehal 98.4 9.4E-08 2E-12 89.8 0.7 97 113-223 43-172 (688)
53 PF02324 Glyco_hydro_70: Glyco 98.3 2E-06 4.2E-11 80.9 7.8 97 39-138 563-673 (809)
54 PF00128 Alpha-amylase: Alpha 98.2 1E-07 2.3E-12 81.7 -2.7 57 161-217 11-89 (316)
55 KOG0471|consensus 98.2 3.5E-07 7.6E-12 85.9 -0.4 62 162-223 48-131 (545)
56 PF14872 GHL5: Hypothetical gl 98.0 5.4E-05 1.2E-09 71.1 11.3 98 41-144 179-343 (811)
57 TIGR02401 trehalose_TreY malto 98.0 1.8E-06 3.8E-11 84.0 0.7 60 161-220 23-108 (825)
58 PRK14507 putative bifunctional 97.9 3.5E-06 7.5E-11 87.1 1.2 62 161-222 765-854 (1693)
59 PRK14511 maltooligosyl trehalo 97.9 4.5E-06 9.8E-11 81.6 1.0 60 161-220 27-112 (879)
60 COG3280 TreY Maltooligosyl tre 97.5 3.1E-05 6.7E-10 73.7 0.9 60 161-220 26-111 (889)
61 PF14871 GHL6: Hypothetical gl 97.5 0.00034 7.3E-09 53.9 6.2 80 68-161 4-83 (132)
62 smart00642 Aamy Alpha-amylase 97.3 4.1E-05 8.8E-10 61.3 -0.4 46 162-207 27-97 (166)
63 PRK09441 cytoplasmic alpha-amy 97.3 3.4E-05 7.4E-10 71.6 -1.6 52 162-213 30-116 (479)
64 TIGR01531 glyc_debranch glycog 96.9 0.0003 6.6E-09 71.6 1.1 65 153-217 130-222 (1464)
65 PLN00196 alpha-amylase; Provis 96.9 0.00019 4.2E-09 65.7 -0.4 48 162-210 52-122 (428)
66 PRK09505 malS alpha-amylase; R 96.8 0.00024 5.1E-09 68.6 -0.4 54 161-214 237-332 (683)
67 PRK12313 glycogen branching en 96.7 0.00036 7.7E-09 67.0 -0.7 52 161-212 178-252 (633)
68 PF02638 DUF187: Glycosyl hydr 96.6 0.022 4.7E-07 50.1 9.9 71 61-132 17-90 (311)
69 TIGR01515 branching_enzym alph 96.5 0.00056 1.2E-08 65.4 -0.2 54 161-214 164-240 (613)
70 PF14488 DUF4434: Domain of un 96.3 0.029 6.2E-07 44.9 8.4 72 61-136 18-89 (166)
71 PRK05402 glycogen branching en 96.3 0.00093 2E-08 65.1 -0.4 53 161-213 273-348 (726)
72 TIGR02402 trehalose_TreZ malto 96.3 0.00079 1.7E-08 63.5 -0.9 53 160-212 117-192 (542)
73 PLN02361 alpha-amylase 95.9 0.0016 3.5E-08 59.1 -0.5 43 163-206 38-102 (401)
74 TIGR02100 glgX_debranch glycog 95.9 0.0018 3.9E-08 62.8 -0.4 51 160-210 190-275 (688)
75 PRK03705 glycogen debranching 95.6 0.003 6.4E-08 60.9 -0.2 48 160-207 185-269 (658)
76 COG1649 Uncharacterized protei 95.5 0.19 4.2E-06 45.8 11.1 71 59-130 60-133 (418)
77 PF00150 Cellulase: Cellulase 95.5 0.025 5.5E-07 47.8 5.3 61 65-134 23-84 (281)
78 TIGR02104 pulA_typeI pullulana 95.1 0.0038 8.2E-08 59.7 -1.2 55 160-214 170-264 (605)
79 PLN02960 alpha-amylase 95.0 0.0066 1.4E-07 59.7 0.1 51 160-210 423-496 (897)
80 PRK14705 glycogen branching en 94.8 0.0087 1.9E-07 61.1 0.4 57 161-218 773-852 (1224)
81 cd06593 GH31_xylosidase_YicI Y 94.6 0.28 6E-06 42.8 9.2 112 61-193 22-136 (308)
82 PRK14508 4-alpha-glucanotransf 94.5 0.092 2E-06 49.2 6.2 56 56-112 19-75 (497)
83 PLN02784 alpha-amylase 94.5 0.0092 2E-07 58.6 -0.4 44 163-207 530-595 (894)
84 PLN02447 1,4-alpha-glucan-bran 94.1 0.012 2.6E-07 57.4 -0.5 50 160-209 257-329 (758)
85 PLN02635 disproportionating en 93.9 0.11 2.5E-06 48.9 5.6 71 41-115 31-105 (538)
86 PRK12568 glycogen branching en 93.8 0.016 3.4E-07 56.4 -0.4 48 161-208 277-347 (730)
87 cd06592 GH31_glucosidase_KIAA1 93.7 0.55 1.2E-05 41.0 9.2 110 61-193 28-141 (303)
88 PRK14706 glycogen branching en 93.6 0.017 3.7E-07 55.6 -0.4 53 161-213 175-250 (639)
89 PF07745 Glyco_hydro_53: Glyco 93.4 0.27 5.8E-06 43.7 6.8 52 71-136 31-82 (332)
90 PF02446 Glyco_hydro_77: 4-alp 93.4 0.13 2.9E-06 48.1 5.1 61 55-116 10-72 (496)
91 PF02065 Melibiase: Melibiase; 93.2 0.68 1.5E-05 42.1 9.3 113 61-193 56-169 (394)
92 PRK09936 hypothetical protein; 93.1 1.2 2.6E-05 38.7 10.1 80 40-147 22-102 (296)
93 PRK14510 putative bifunctional 93.1 0.2 4.2E-06 51.9 6.2 60 55-115 738-801 (1221)
94 TIGR02102 pullulan_Gpos pullul 93.0 0.021 4.6E-07 57.9 -0.8 19 160-178 486-504 (1111)
95 COG3867 Arabinogalactan endo-1 93.0 0.38 8.2E-06 42.0 6.8 61 64-133 63-125 (403)
96 PLN02950 4-alpha-glucanotransf 92.5 0.39 8.6E-06 48.1 7.3 60 57-117 277-341 (909)
97 PF01301 Glyco_hydro_35: Glyco 92.5 0.17 3.7E-06 44.7 4.2 62 63-134 24-85 (319)
98 PF05913 DUF871: Bacterial pro 92.1 0.34 7.3E-06 43.5 5.7 59 61-135 12-70 (357)
99 PRK11052 malQ 4-alpha-glucanot 92.0 0.45 9.8E-06 46.4 6.8 64 54-118 156-223 (695)
100 PLN03236 4-alpha-glucanotransf 91.9 0.47 1E-05 46.4 6.7 77 36-115 58-139 (745)
101 cd06568 GH20_SpHex_like A subg 91.3 1 2.3E-05 39.8 7.9 74 61-138 16-102 (329)
102 COG3589 Uncharacterized conser 91.2 0.64 1.4E-05 41.1 6.2 69 42-135 4-72 (360)
103 PF02449 Glyco_hydro_42: Beta- 90.8 0.64 1.4E-05 41.7 6.1 66 63-145 10-77 (374)
104 cd06562 GH20_HexA_HexB-like Be 89.5 1.5 3.3E-05 39.1 7.4 75 61-139 16-98 (348)
105 cd06569 GH20_Sm-chitobiase-lik 89.0 1.9 4.1E-05 39.9 7.8 30 110-139 95-125 (445)
106 PF14701 hDGE_amylase: glucano 88.9 0.18 3.8E-06 46.1 1.0 65 153-217 20-114 (423)
107 cd06565 GH20_GcnA-like Glycosy 88.5 2 4.3E-05 37.6 7.3 68 60-137 14-86 (301)
108 PF03198 Glyco_hydro_72: Gluca 88.1 1.6 3.6E-05 38.3 6.4 76 40-138 30-105 (314)
109 PF00728 Glyco_hydro_20: Glyco 87.3 1 2.3E-05 39.6 4.9 75 61-139 16-101 (351)
110 TIGR03849 arch_ComA phosphosul 86.9 2.1 4.6E-05 36.2 6.3 51 67-136 74-124 (237)
111 PF01120 Alpha_L_fucos: Alpha- 86.6 1.5 3.1E-05 39.2 5.4 61 69-130 96-156 (346)
112 cd02742 GH20_hexosaminidase Be 86.3 2.4 5.2E-05 37.0 6.6 75 61-139 14-100 (303)
113 PLN03059 beta-galactosidase; P 86.0 1.8 3.8E-05 43.0 6.0 62 62-133 58-119 (840)
114 smart00812 Alpha_L_fucos Alpha 85.8 3 6.6E-05 37.8 7.1 59 71-130 88-146 (384)
115 PF13204 DUF4038: Protein of u 85.1 2.7 5.8E-05 36.5 6.2 71 61-136 28-110 (289)
116 cd06591 GH31_xylosidase_XylS X 84.9 8.2 0.00018 33.9 9.3 78 61-149 22-102 (319)
117 PRK10076 pyruvate formate lyas 84.5 6.6 0.00014 32.6 8.1 65 63-130 145-211 (213)
118 PF13380 CoA_binding_2: CoA bi 84.2 2.7 5.8E-05 31.3 5.1 41 63-129 66-106 (116)
119 cd06563 GH20_chitobiase-like T 84.0 4 8.6E-05 36.5 7.0 29 110-138 84-113 (357)
120 PRK08208 coproporphyrinogen II 83.8 2.7 5.9E-05 38.5 6.0 72 67-148 142-214 (430)
121 PLN02849 beta-glucosidase 83.6 8.7 0.00019 36.2 9.3 75 60-146 76-150 (503)
122 TIGR00539 hemN_rel putative ox 83.3 3.9 8.4E-05 36.5 6.6 72 67-148 101-173 (360)
123 PRK05628 coproporphyrinogen II 83.2 3.2 7E-05 37.2 6.1 72 67-148 109-181 (375)
124 PF10566 Glyco_hydro_97: Glyco 82.5 6.1 0.00013 34.2 7.2 65 59-132 28-93 (273)
125 PRK10426 alpha-glucosidase; Pr 82.2 16 0.00035 35.4 10.8 80 63-149 221-305 (635)
126 PRK07094 biotin synthase; Prov 82.2 2.9 6.3E-05 36.6 5.3 45 103-148 157-201 (323)
127 COG2730 BglC Endoglucanase [Ca 81.6 3.8 8.2E-05 37.3 6.0 58 66-132 76-136 (407)
128 TIGR03356 BGL beta-galactosida 81.6 4 8.6E-05 37.5 6.1 65 60-133 51-115 (427)
129 cd06599 GH31_glycosidase_Aec37 81.4 5.8 0.00013 34.8 6.9 78 63-149 29-109 (317)
130 PRK01060 endonuclease IV; Prov 81.0 8 0.00017 32.8 7.5 65 63-141 12-81 (281)
131 PLN02877 alpha-amylase/limit d 80.7 0.37 7.9E-06 48.5 -1.0 21 194-214 480-500 (970)
132 TIGR00217 malQ 4-alpha-glucano 80.6 2.7 5.9E-05 39.6 4.8 57 57-113 29-86 (513)
133 PRK08207 coproporphyrinogen II 80.5 4.7 0.0001 37.8 6.3 72 67-148 270-342 (488)
134 cd06570 GH20_chitobiase-like_1 80.3 9.7 0.00021 33.5 7.9 74 61-138 16-95 (311)
135 cd06564 GH20_DspB_LnbB-like Gl 80.2 8.3 0.00018 33.9 7.5 78 61-139 15-110 (326)
136 cd06603 GH31_GANC_GANAB_alpha 79.9 15 0.00032 32.5 9.1 75 61-148 22-101 (339)
137 PRK10658 putative alpha-glucos 79.7 6.6 0.00014 38.3 7.2 70 113-193 326-395 (665)
138 TIGR01210 conserved hypothetic 78.7 4.3 9.3E-05 35.7 5.2 58 71-137 121-180 (313)
139 PRK05660 HemN family oxidoredu 78.5 6.2 0.00013 35.5 6.3 72 67-148 108-180 (378)
140 COG1640 MalQ 4-alpha-glucanotr 78.1 8.1 0.00018 36.5 7.0 61 57-117 29-92 (520)
141 COG3345 GalA Alpha-galactosida 77.5 7.3 0.00016 37.0 6.4 92 61-162 307-398 (687)
142 PRK05904 coproporphyrinogen II 76.4 7.1 0.00015 34.9 6.0 72 67-148 104-176 (353)
143 cd06594 GH31_glucosidase_YihQ 76.1 7.2 0.00016 34.3 5.9 81 61-148 21-107 (317)
144 TIGR03471 HpnJ hopanoid biosyn 76.0 7 0.00015 36.2 6.0 39 110-148 321-359 (472)
145 PF02679 ComA: (2R)-phospho-3- 75.7 4.9 0.00011 34.2 4.5 47 68-133 88-134 (244)
146 PLN02801 beta-amylase 75.4 22 0.00048 33.4 8.9 90 42-147 17-118 (517)
147 cd06604 GH31_glucosidase_II_Ma 75.3 26 0.00057 30.9 9.3 75 61-148 22-101 (339)
148 cd05014 SIS_Kpsf KpsF-like pro 75.3 13 0.00029 27.3 6.4 65 66-130 15-79 (128)
149 PRK13347 coproporphyrinogen II 75.1 6.9 0.00015 36.1 5.7 68 71-147 156-224 (453)
150 PRK15447 putative protease; Pr 74.7 14 0.00031 32.2 7.3 54 60-132 15-68 (301)
151 TIGR00538 hemN oxygen-independ 74.3 7.1 0.00015 36.0 5.6 69 71-148 155-224 (455)
152 PRK09249 coproporphyrinogen II 74.1 9.2 0.0002 35.3 6.3 69 71-148 155-224 (453)
153 PRK07379 coproporphyrinogen II 73.8 9.7 0.00021 34.6 6.3 71 67-147 116-187 (400)
154 PRK08446 coproporphyrinogen II 73.7 12 0.00027 33.2 6.8 72 67-148 99-171 (350)
155 PTZ00445 p36-lilke protein; Pr 73.6 12 0.00026 31.2 6.2 61 63-130 28-96 (219)
156 KOG0496|consensus 72.8 11 0.00023 36.4 6.3 75 63-148 49-128 (649)
157 cd06598 GH31_transferase_CtsZ 72.5 11 0.00025 33.0 6.2 80 62-149 23-106 (317)
158 PRK06294 coproporphyrinogen II 72.4 12 0.00026 33.6 6.4 72 67-148 104-176 (370)
159 cd06602 GH31_MGAM_SI_GAA This 72.4 37 0.00079 30.1 9.5 64 62-135 23-89 (339)
160 TIGR00542 hxl6Piso_put hexulos 72.3 10 0.00022 32.3 5.8 52 65-129 18-69 (279)
161 TIGR00433 bioB biotin syntheta 72.2 12 0.00027 32.0 6.3 56 71-136 127-182 (296)
162 PRK08599 coproporphyrinogen II 71.9 12 0.00025 33.6 6.3 68 71-147 104-172 (377)
163 COG1501 Alpha-glucosidases, fa 70.9 11 0.00023 37.5 6.1 70 113-193 322-391 (772)
164 PRK06256 biotin synthase; Vali 70.7 6.9 0.00015 34.4 4.5 56 71-136 156-211 (336)
165 cd04886 ACT_ThrD-II-like C-ter 69.2 25 0.00053 22.5 6.0 64 59-129 9-72 (73)
166 PRK13210 putative L-xylulose 5 69.1 14 0.0003 31.3 5.9 53 65-130 18-70 (284)
167 PF07071 DUF1341: Protein of u 69.0 19 0.00041 29.8 6.2 44 65-128 137-180 (218)
168 PF01373 Glyco_hydro_14: Glyco 68.7 8.9 0.00019 35.0 4.7 64 60-138 13-79 (402)
169 PF01212 Beta_elim_lyase: Beta 68.3 5.3 0.00011 34.7 3.2 23 111-133 144-166 (290)
170 PLN02803 beta-amylase 68.0 30 0.00066 32.7 8.1 64 60-138 104-170 (548)
171 PLN02905 beta-amylase 67.7 29 0.00063 33.5 8.0 65 59-138 282-349 (702)
172 cd06589 GH31 The enzymes of gl 67.4 19 0.00042 30.6 6.4 75 60-148 21-98 (265)
173 PRK14340 (dimethylallyl)adenos 66.9 13 0.00027 34.4 5.5 39 110-148 281-321 (445)
174 cd04824 eu_ALAD_PBGS_cysteine_ 66.5 29 0.00063 30.6 7.3 62 61-135 49-117 (320)
175 PRK15452 putative protease; Pr 66.4 20 0.00044 33.1 6.7 54 60-131 11-65 (443)
176 TIGR02867 spore_II_P stage II 66.2 17 0.00036 29.9 5.5 46 42-87 2-57 (196)
177 PRK14582 pgaB outer membrane N 66.1 29 0.00063 33.9 7.9 66 61-132 332-401 (671)
178 PF13199 Glyco_hydro_66: Glyco 66.1 19 0.00042 34.3 6.6 70 61-131 116-189 (559)
179 TIGR01211 ELP3 histone acetylt 65.7 17 0.00036 34.5 6.1 69 67-145 207-275 (522)
180 PRK13561 putative diguanylate 65.5 13 0.00029 35.6 5.6 83 41-135 519-614 (651)
181 PF08821 CGGC: CGGC domain; I 65.0 42 0.0009 24.7 6.9 54 62-130 51-104 (107)
182 PLN00197 beta-amylase; Provisi 64.8 38 0.00082 32.2 8.1 65 59-138 123-190 (573)
183 PLN02161 beta-amylase 64.6 37 0.00079 32.0 7.9 65 58-137 112-179 (531)
184 PLN02635 disproportionating en 64.3 12 0.00025 35.6 4.8 24 112-135 224-247 (538)
185 COG2876 AroA 3-deoxy-D-arabino 64.1 28 0.00061 30.0 6.6 65 56-132 52-116 (286)
186 COG2200 Rtn c-di-GMP phosphodi 64.1 25 0.00055 29.7 6.5 80 41-135 121-216 (256)
187 cd04823 ALAD_PBGS_aspartate_ri 63.9 35 0.00076 30.2 7.3 62 61-135 52-119 (320)
188 PLN02998 beta-glucosidase 63.4 31 0.00068 32.4 7.4 75 60-146 79-153 (497)
189 PRK10781 rcsF outer membrane l 63.3 67 0.0015 24.7 9.2 32 58-89 81-112 (133)
190 PRK13384 delta-aminolevulinic 63.3 36 0.00077 30.1 7.2 64 61-135 59-124 (322)
191 PRK00278 trpC indole-3-glycero 63.1 19 0.00041 30.7 5.5 28 111-141 146-173 (260)
192 PRK09856 fructoselysine 3-epim 63.0 26 0.00056 29.5 6.4 51 65-130 15-65 (275)
193 PLN02705 beta-amylase 62.9 37 0.00079 32.8 7.6 82 41-138 247-331 (681)
194 PRK05799 coproporphyrinogen II 62.0 26 0.00057 31.3 6.5 70 68-147 101-171 (374)
195 COG0041 PurE Phosphoribosylcar 61.8 30 0.00066 27.3 5.9 52 60-132 13-64 (162)
196 COG1523 PulA Type II secretory 61.8 1.9 4E-05 42.1 -1.0 19 160-178 206-224 (697)
197 PRK09058 coproporphyrinogen II 61.7 22 0.00047 32.9 6.0 72 67-148 164-236 (449)
198 PRK14335 (dimethylallyl)adenos 61.4 12 0.00027 34.5 4.4 39 110-148 291-331 (455)
199 PRK14508 4-alpha-glucanotransf 61.1 16 0.00035 34.3 5.1 24 112-135 198-221 (497)
200 PRK12928 lipoyl synthase; Prov 60.3 42 0.00091 29.2 7.3 65 60-134 216-280 (290)
201 PRK13209 L-xylulose 5-phosphat 60.2 26 0.00056 29.7 5.9 52 65-129 23-74 (283)
202 PRK10060 RNase II stability mo 60.0 24 0.00052 34.2 6.3 68 60-135 538-621 (663)
203 TIGR02026 BchE magnesium-proto 59.4 22 0.00049 33.2 5.8 39 109-147 320-358 (497)
204 cd00019 AP2Ec AP endonuclease 59.3 36 0.00077 28.8 6.6 22 63-85 10-31 (279)
205 TIGR01496 DHPS dihydropteroate 59.1 80 0.0017 26.9 8.7 74 43-132 5-82 (257)
206 PRK06582 coproporphyrinogen II 59.1 29 0.00062 31.5 6.2 71 67-147 112-182 (390)
207 PRK14333 (dimethylallyl)adenos 58.9 17 0.00037 33.5 4.8 40 110-149 288-329 (448)
208 PRK09057 coproporphyrinogen II 58.9 29 0.00064 31.2 6.3 65 67-141 105-169 (380)
209 PRK14330 (dimethylallyl)adenos 58.4 19 0.00041 33.0 5.0 39 110-148 273-313 (434)
210 PRK11059 regulatory protein Cs 57.8 36 0.00078 32.7 7.0 84 40-135 517-613 (640)
211 PF01055 Glyco_hydro_31: Glyco 57.8 29 0.00063 31.7 6.1 75 62-149 42-122 (441)
212 PRK09852 cryptic 6-phospho-bet 57.8 27 0.00059 32.6 6.0 66 60-133 68-133 (474)
213 TIGR02103 pullul_strch alpha-1 57.6 2.1 4.6E-05 43.0 -1.4 24 194-217 418-441 (898)
214 TIGR03581 EF_0839 conserved hy 57.3 29 0.00063 29.1 5.4 43 65-127 137-179 (236)
215 cd00945 Aldolase_Class_I Class 56.5 48 0.001 26.0 6.6 59 62-137 64-125 (201)
216 TIGR00262 trpA tryptophan synt 56.4 49 0.0011 28.1 6.9 26 111-136 126-151 (256)
217 COG1533 SplB DNA repair photol 56.4 48 0.001 29.0 7.0 72 59-150 165-237 (297)
218 COG0520 csdA Selenocysteine ly 56.3 11 0.00025 34.3 3.2 35 99-133 166-200 (405)
219 cd06450 DOPA_deC_like DOPA dec 56.2 34 0.00074 29.5 6.1 28 108-135 161-188 (345)
220 cd05013 SIS_RpiR RpiR-like pro 56.0 21 0.00046 26.1 4.2 71 60-130 22-92 (139)
221 PF13200 DUF4015: Putative gly 55.7 53 0.0011 29.1 7.1 140 63-218 124-278 (316)
222 PF13407 Peripla_BP_4: Peripla 55.4 27 0.00059 28.6 5.1 47 60-130 39-85 (257)
223 PLN03236 4-alpha-glucanotransf 55.3 20 0.00043 35.4 4.8 28 112-140 274-301 (745)
224 cd00384 ALAD_PBGS Porphobilino 55.3 59 0.0013 28.7 7.2 64 61-135 49-114 (314)
225 cd00287 ribokinase_pfkB_like r 55.2 31 0.00066 27.0 5.2 52 71-136 44-95 (196)
226 PRK12381 bifunctional succinyl 55.0 35 0.00076 30.7 6.2 54 77-144 183-236 (406)
227 PF01261 AP_endonuc_2: Xylose 55.0 9.8 0.00021 30.1 2.3 43 71-129 2-44 (213)
228 COG4943 Predicted signal trans 54.4 12 0.00026 34.9 3.0 45 99-145 437-489 (524)
229 TIGR01212 radical SAM protein, 54.2 36 0.00079 29.6 5.9 38 110-147 161-198 (302)
230 PRK08444 hypothetical protein; 54.1 38 0.00082 30.3 6.1 41 103-143 180-220 (353)
231 COG0826 Collagenase and relate 54.0 80 0.0017 28.3 8.1 67 59-142 13-79 (347)
232 TIGR00089 RNA modification enz 53.9 27 0.0006 31.8 5.3 40 109-148 271-312 (429)
233 PF00202 Aminotran_3: Aminotra 53.7 71 0.0015 28.1 7.7 86 65-167 166-251 (339)
234 PF00232 Glyco_hydro_1: Glycos 53.5 28 0.00062 32.1 5.4 74 61-146 56-130 (455)
235 smart00518 AP2Ec AP endonuclea 53.4 94 0.002 26.0 8.2 21 65-86 12-32 (273)
236 PRK15014 6-phospho-beta-glucos 53.3 33 0.00071 32.1 5.7 66 60-133 66-131 (477)
237 PF02446 Glyco_hydro_77: 4-alp 53.3 16 0.00036 34.2 3.8 33 112-145 192-226 (496)
238 cd04724 Tryptophan_synthase_al 53.3 46 0.00099 28.0 6.2 25 112-136 116-140 (242)
239 PF13200 DUF4015: Putative gly 53.2 32 0.00069 30.4 5.3 63 66-133 15-82 (316)
240 TIGR00666 PBP4 D-alanyl-D-alan 52.3 68 0.0015 28.6 7.4 89 41-136 3-95 (345)
241 PF07488 Glyco_hydro_67M: Glyc 52.0 58 0.0013 28.8 6.6 60 61-134 55-114 (328)
242 smart00729 Elp3 Elongator prot 51.8 43 0.00094 26.1 5.6 66 71-145 104-170 (216)
243 PRK08898 coproporphyrinogen II 51.5 39 0.00084 30.6 5.8 70 67-146 123-192 (394)
244 COG3222 Uncharacterized protei 51.3 6.4 0.00014 32.0 0.6 39 92-130 140-184 (211)
245 PRK13111 trpA tryptophan synth 51.2 56 0.0012 27.9 6.4 26 111-136 128-153 (258)
246 PRK08247 cystathionine gamma-s 50.9 21 0.00045 31.8 3.9 27 108-134 149-175 (366)
247 cd01299 Met_dep_hydrolase_A Me 50.8 1E+02 0.0022 26.7 8.3 64 60-132 117-180 (342)
248 TIGR00510 lipA lipoate synthas 50.2 77 0.0017 27.8 7.3 66 60-135 219-284 (302)
249 PRK04302 triosephosphate isome 50.2 46 0.001 27.5 5.7 43 71-132 79-121 (223)
250 PRK13398 3-deoxy-7-phosphohept 49.9 95 0.0021 26.7 7.7 65 56-132 34-98 (266)
251 PRK05939 hypothetical protein; 49.8 25 0.00053 31.9 4.3 30 105-134 141-170 (397)
252 PRK14453 chloramphenicol/florf 49.6 1.5E+02 0.0033 26.5 9.2 59 61-130 262-324 (347)
253 PRK09064 5-aminolevulinate syn 49.3 35 0.00075 30.5 5.2 27 109-135 192-218 (407)
254 PLN02389 biotin synthase 49.0 49 0.0011 30.0 6.0 28 109-136 210-237 (379)
255 cd01335 Radical_SAM Radical SA 48.9 37 0.0008 26.0 4.7 34 107-140 120-153 (204)
256 cd00615 Orn_deC_like Ornithine 48.9 13 0.00028 31.9 2.2 27 108-134 166-192 (294)
257 PF15640 Tox-MPTase4: Metallop 48.8 21 0.00045 27.2 3.0 26 106-131 16-41 (132)
258 TIGR01579 MiaB-like-C MiaB-lik 48.7 36 0.00077 30.9 5.2 39 110-148 271-311 (414)
259 TIGR00612 ispG_gcpE 1-hydroxy- 48.6 44 0.00096 29.8 5.4 82 60-144 31-138 (346)
260 KOG1065|consensus 48.6 53 0.0012 32.7 6.5 63 60-134 308-373 (805)
261 PF04343 DUF488: Protein of un 48.2 24 0.00051 26.3 3.3 33 114-147 2-34 (122)
262 PRK13125 trpA tryptophan synth 48.1 70 0.0015 26.8 6.5 25 111-135 115-139 (244)
263 COG2355 Zn-dependent dipeptida 48.1 1.4E+02 0.003 26.5 8.4 75 40-126 215-290 (313)
264 smart00481 POLIIIAc DNA polyme 48.0 51 0.0011 21.4 4.6 43 66-131 18-60 (67)
265 PRK14331 (dimethylallyl)adenos 47.8 28 0.00061 32.0 4.3 39 110-148 278-318 (437)
266 TIGR01324 cysta_beta_ly_B cyst 47.6 28 0.00061 31.3 4.2 28 108-135 148-175 (377)
267 smart00052 EAL Putative diguan 47.5 42 0.00092 27.1 5.0 86 41-135 118-213 (241)
268 COG1168 MalY Bifunctional PLP- 47.3 22 0.00049 32.1 3.5 72 60-133 91-199 (388)
269 PF02836 Glyco_hydro_2_C: Glyc 47.3 47 0.001 28.5 5.5 48 61-134 34-81 (298)
270 PRK05967 cystathionine beta-ly 47.3 31 0.00068 31.4 4.5 28 108-135 162-189 (395)
271 TIGR03470 HpnH hopanoid biosyn 47.0 65 0.0014 28.2 6.4 74 61-151 176-249 (318)
272 cd04795 SIS SIS domain. SIS (S 47.0 30 0.00065 23.2 3.5 66 65-130 12-79 (87)
273 PRK09856 fructoselysine 3-epim 46.9 1E+02 0.0022 25.8 7.4 61 62-133 89-150 (275)
274 cd06542 GH18_EndoS-like Endo-b 46.6 29 0.00064 29.0 4.0 30 110-139 49-78 (255)
275 TIGR03246 arg_catab_astC succi 46.6 28 0.0006 31.3 4.1 54 77-144 179-232 (397)
276 PRK11145 pflA pyruvate formate 46.5 93 0.002 25.8 7.1 57 71-129 186-245 (246)
277 PRK13753 dihydropteroate synth 46.2 1.4E+02 0.003 25.9 8.1 43 43-88 7-49 (279)
278 TIGR00106 uncharacterized prot 45.9 1.1E+02 0.0023 22.1 6.3 62 60-139 15-81 (97)
279 cd06600 GH31_MGAM-like This fa 45.7 61 0.0013 28.4 6.0 62 61-134 22-86 (317)
280 PF00218 IGPS: Indole-3-glycer 45.7 46 0.00099 28.5 5.0 30 111-143 144-173 (254)
281 PRK09028 cystathionine beta-ly 45.5 35 0.00075 31.0 4.5 28 108-135 159-186 (394)
282 PLN02591 tryptophan synthase 45.5 1E+02 0.0023 26.2 7.2 26 111-136 117-142 (250)
283 COG2159 Predicted metal-depend 45.2 79 0.0017 27.4 6.6 28 63-90 112-139 (293)
284 PRK01278 argD acetylornithine 45.1 29 0.00062 30.9 3.9 54 77-144 175-228 (389)
285 PRK09593 arb 6-phospho-beta-gl 45.1 66 0.0014 30.1 6.4 65 60-132 70-134 (478)
286 COG1891 Uncharacterized protei 45.0 12 0.00027 30.3 1.3 23 109-131 164-186 (235)
287 PF04914 DltD_C: DltD C-termin 45.0 28 0.0006 26.6 3.2 24 112-135 36-59 (130)
288 KOG0259|consensus 44.9 24 0.00051 32.2 3.2 32 110-141 217-248 (447)
289 PLN02950 4-alpha-glucanotransf 44.7 37 0.0008 34.4 4.9 24 112-135 461-484 (909)
290 KOG1405|consensus 44.7 80 0.0017 28.7 6.4 69 59-141 252-321 (484)
291 PRK05942 aspartate aminotransf 44.6 64 0.0014 28.7 6.1 27 110-136 188-214 (394)
292 PRK08573 phosphomethylpyrimidi 44.4 47 0.001 30.6 5.3 78 60-138 14-110 (448)
293 PF14883 GHL13: Hypothetical g 44.2 88 0.0019 27.4 6.5 63 67-132 20-84 (294)
294 PRK14336 (dimethylallyl)adenos 44.0 46 0.001 30.4 5.1 39 110-148 257-297 (418)
295 PF01244 Peptidase_M19: Membra 43.8 41 0.00088 29.7 4.6 76 40-127 226-302 (320)
296 PRK09331 Sep-tRNA:Cys-tRNA syn 43.6 24 0.00053 31.5 3.2 30 106-135 169-198 (387)
297 TIGR03551 F420_cofH 7,8-dideme 43.5 27 0.00059 30.9 3.5 29 110-138 177-205 (343)
298 TIGR03550 F420_cofG 7,8-dideme 43.4 38 0.00082 29.7 4.4 61 71-137 114-174 (322)
299 PRK11543 gutQ D-arabinose 5-ph 43.2 70 0.0015 27.7 6.0 66 65-130 56-121 (321)
300 COG0794 GutQ Predicted sugar p 42.8 1.1E+02 0.0024 25.3 6.6 65 65-130 53-118 (202)
301 COG3669 Alpha-L-fucosidase [Ca 42.6 1.5E+02 0.0032 27.2 7.9 99 39-148 22-133 (430)
302 cd06454 KBL_like KBL_like; thi 42.6 25 0.00055 30.3 3.1 26 109-134 146-171 (349)
303 PLN02509 cystathionine beta-ly 42.5 37 0.0008 31.6 4.3 27 108-134 230-256 (464)
304 cd06452 SepCysS Sep-tRNA:Cys-t 42.4 22 0.00048 31.3 2.7 28 108-135 152-179 (361)
305 KOG2499|consensus 42.4 32 0.00068 32.3 3.7 30 110-139 248-278 (542)
306 cd00609 AAT_like Aspartate ami 42.4 30 0.00065 29.5 3.5 27 110-136 150-176 (350)
307 PRK13361 molybdenum cofactor b 42.2 98 0.0021 27.1 6.8 21 110-130 168-188 (329)
308 PRK14338 (dimethylallyl)adenos 42.1 46 0.001 30.8 4.9 39 110-148 288-328 (459)
309 PRK09257 aromatic amino acid a 42.0 1.3E+02 0.0028 26.8 7.7 30 110-139 190-219 (396)
310 TIGR01821 5aminolev_synth 5-am 41.8 51 0.0011 29.4 5.0 27 109-135 191-217 (402)
311 PRK07050 cystathionine beta-ly 41.7 37 0.00081 30.7 4.1 29 108-136 163-191 (394)
312 PF01791 DeoC: DeoC/LacD famil 41.7 20 0.00044 29.8 2.3 59 66-137 79-137 (236)
313 KOG0470|consensus 41.6 5.4 0.00012 38.9 -1.4 48 160-207 261-338 (757)
314 TIGR01814 kynureninase kynuren 41.6 23 0.0005 31.8 2.7 31 103-133 179-209 (406)
315 COG1082 IolE Sugar phosphate i 41.5 80 0.0017 26.2 5.9 70 65-135 17-107 (274)
316 COG0134 TrpC Indole-3-glycerol 41.4 32 0.0007 29.4 3.4 27 111-140 142-168 (254)
317 TIGR03127 RuMP_HxlB 6-phospho 41.4 1.3E+02 0.0028 23.6 6.8 61 65-130 44-104 (179)
318 cd00614 CGS_like CGS_like: Cys 40.9 25 0.00055 31.2 2.9 27 108-134 138-164 (369)
319 TIGR03699 mena_SCO4550 menaqui 40.7 21 0.00046 31.4 2.3 31 106-136 175-205 (340)
320 PRK14455 ribosomal RNA large s 40.6 1.2E+02 0.0026 27.2 7.1 22 109-130 310-331 (356)
321 PRK14325 (dimethylallyl)adenos 40.5 46 0.00099 30.6 4.6 39 110-148 282-322 (444)
322 TIGR02539 SepCysS Sep-tRNA:Cys 40.4 28 0.00061 30.8 3.1 28 108-135 159-186 (370)
323 PRK14457 ribosomal RNA large s 40.4 2.3E+02 0.005 25.3 8.8 54 63-130 271-324 (345)
324 PF12905 Glyco_hydro_101: Endo 40.3 17 0.00037 33.3 1.6 105 38-149 26-132 (425)
325 TIGR03234 OH-pyruv-isom hydrox 40.0 53 0.0012 27.3 4.6 42 65-130 16-57 (254)
326 COG1104 NifS Cysteine sulfinat 40.0 60 0.0013 29.6 5.0 69 63-133 102-179 (386)
327 TIGR00217 malQ 4-alpha-glucano 39.7 45 0.00097 31.5 4.4 33 112-145 212-246 (513)
328 PLN02651 cysteine desulfurase 39.6 29 0.00063 30.5 3.1 32 103-134 146-177 (364)
329 PF01408 GFO_IDH_MocA: Oxidore 39.6 38 0.00082 24.4 3.2 26 106-131 94-119 (120)
330 cd01494 AAT_I Aspartate aminot 39.6 27 0.00058 26.2 2.5 26 113-138 110-135 (170)
331 PF00266 Aminotran_5: Aminotra 39.5 17 0.00038 32.0 1.6 39 96-134 140-178 (371)
332 PRK11194 ribosomal RNA large s 39.4 2.5E+02 0.0054 25.4 9.0 68 42-130 263-331 (372)
333 PLN03227 serine palmitoyltrans 39.4 82 0.0018 28.3 6.0 27 109-135 152-178 (392)
334 COG0296 GlgB 1,4-alpha-glucan 39.4 14 0.00029 35.8 0.9 52 161-212 172-246 (628)
335 PRK09989 hypothetical protein; 39.4 89 0.0019 26.1 5.9 42 65-130 17-58 (258)
336 PRK13393 5-aminolevulinate syn 39.3 72 0.0016 28.6 5.6 27 108-134 190-216 (406)
337 cd06595 GH31_xylosidase_XylS-l 39.3 27 0.00059 30.2 2.8 68 61-135 23-97 (292)
338 COG1809 (2R)-phospho-3-sulfola 39.2 88 0.0019 26.4 5.5 22 111-132 118-139 (258)
339 PRK11613 folP dihydropteroate 39.1 2.6E+02 0.0056 24.3 8.8 41 43-86 20-60 (282)
340 PRK13238 tnaA tryptophanase/L- 39.1 44 0.00095 31.0 4.2 23 110-132 196-218 (460)
341 PRK08445 hypothetical protein; 39.0 51 0.0011 29.4 4.5 34 106-139 176-209 (348)
342 TIGR01140 L_thr_O3P_dcar L-thr 38.9 38 0.00083 29.4 3.7 29 110-138 143-171 (330)
343 PRK13511 6-phospho-beta-galact 38.8 1E+02 0.0022 28.8 6.5 75 59-145 50-124 (469)
344 PF00155 Aminotran_1_2: Aminot 38.8 71 0.0015 27.7 5.4 66 59-140 129-196 (363)
345 TIGR00393 kpsF KpsF/GutQ famil 38.4 99 0.0021 25.8 6.0 65 66-130 15-79 (268)
346 TIGR03620 F420_MSMEG_4141 prob 38.3 58 0.0013 28.1 4.6 27 59-86 233-259 (278)
347 PRK00854 rocD ornithine--oxo-a 38.3 49 0.0011 29.5 4.4 35 111-145 207-241 (401)
348 cd06502 TA_like Low-specificit 38.3 35 0.00075 29.3 3.3 23 110-132 144-166 (338)
349 COG0113 HemB Delta-aminolevuli 38.2 1.4E+02 0.0031 26.4 6.8 63 60-135 58-126 (330)
350 PRK05968 hypothetical protein; 38.2 47 0.001 29.9 4.2 27 108-134 160-186 (389)
351 PLN02814 beta-glucosidase 37.9 1.2E+02 0.0025 28.7 6.8 75 60-146 74-148 (504)
352 KOG0256|consensus 37.9 46 0.00099 30.7 3.9 72 60-148 208-282 (471)
353 PRK09589 celA 6-phospho-beta-g 37.8 1E+02 0.0022 28.8 6.4 65 60-132 64-128 (476)
354 PF01565 FAD_binding_4: FAD bi 37.8 47 0.001 24.8 3.6 22 109-130 8-29 (139)
355 PF13727 CoA_binding_3: CoA-bi 37.8 67 0.0015 24.4 4.6 20 111-130 154-173 (175)
356 PRK08636 aspartate aminotransf 37.7 1.3E+02 0.0027 27.0 6.9 29 110-138 193-221 (403)
357 PRK07269 cystathionine gamma-s 37.6 32 0.00068 30.8 3.0 27 108-134 149-175 (364)
358 COG0821 gcpE 1-hydroxy-2-methy 37.5 56 0.0012 29.2 4.3 82 60-145 33-141 (361)
359 PRK14462 ribosomal RNA large s 37.5 2.6E+02 0.0056 25.2 8.7 64 46-130 269-332 (356)
360 TIGR02666 moaA molybdenum cofa 37.5 92 0.002 27.2 5.9 19 110-128 167-185 (334)
361 smart00733 Mterf Mitochondrial 37.3 32 0.00069 17.9 1.9 17 62-79 15-31 (31)
362 PRK09283 delta-aminolevulinic 37.3 2E+02 0.0043 25.6 7.7 64 61-135 57-122 (323)
363 COG0436 Aspartate/tyrosine/aro 37.2 42 0.00091 30.4 3.7 32 110-141 181-212 (393)
364 TIGR01233 lacG 6-phospho-beta- 37.2 1.1E+02 0.0024 28.4 6.6 75 59-145 49-123 (467)
365 PF00490 ALAD: Delta-aminolevu 37.1 71 0.0015 28.3 4.9 62 61-135 55-122 (324)
366 PF01261 AP_endonuc_2: Xylose 37.1 2E+02 0.0043 22.4 8.1 77 62-148 70-151 (213)
367 PRK09776 putative diguanylate 36.8 75 0.0016 32.2 5.8 68 60-135 971-1054(1092)
368 PRK14012 cysteine desulfurase; 36.8 46 0.001 29.8 3.9 31 104-134 153-183 (404)
369 COG1874 LacA Beta-galactosidas 36.7 97 0.0021 30.4 6.2 69 63-145 30-99 (673)
370 PRK12595 bifunctional 3-deoxy- 36.7 1.6E+02 0.0035 26.5 7.3 60 61-132 130-189 (360)
371 PRK00366 ispG 4-hydroxy-3-meth 36.5 54 0.0012 29.5 4.1 84 59-145 38-148 (360)
372 PRK11829 biofilm formation reg 36.5 1.1E+02 0.0023 29.4 6.6 85 41-135 524-619 (660)
373 cd00617 Tnase_like Tryptophana 36.4 43 0.00092 30.9 3.7 23 111-133 172-194 (431)
374 cd06549 GH18_trifunctional GH1 36.3 1.8E+02 0.0038 25.1 7.4 55 64-136 91-149 (298)
375 PRK08960 hypothetical protein; 36.1 50 0.0011 29.3 4.0 28 111-138 184-211 (387)
376 PRK07812 O-acetylhomoserine am 35.9 33 0.00071 31.6 2.8 28 107-134 167-194 (436)
377 PRK14326 (dimethylallyl)adenos 35.7 71 0.0015 30.0 5.1 39 110-148 290-330 (502)
378 PRK05958 8-amino-7-oxononanoat 35.7 32 0.0007 30.1 2.7 27 109-135 182-208 (385)
379 TIGR03799 NOD_PanD_pyr putativ 35.7 1.1E+02 0.0023 29.0 6.3 29 107-135 277-305 (522)
380 COG1489 SfsA DNA-binding prote 35.7 1.1E+02 0.0023 26.0 5.5 54 66-130 157-210 (235)
381 TIGR02493 PFLA pyruvate format 35.7 91 0.002 25.5 5.3 60 63-123 174-234 (235)
382 COG0196 RibF FAD synthase [Coe 35.7 70 0.0015 28.2 4.7 29 59-88 68-96 (304)
383 PRK13397 3-deoxy-7-phosphohept 35.6 2.2E+02 0.0047 24.4 7.5 61 60-132 26-86 (250)
384 TIGR01574 miaB-methiolase tRNA 35.6 58 0.0013 29.9 4.4 40 110-149 280-321 (438)
385 PRK08673 3-deoxy-7-phosphohept 35.4 2.5E+02 0.0054 25.1 8.2 62 59-132 103-164 (335)
386 cd01301 rDP_like renal dipepti 35.3 3.1E+02 0.0067 24.0 8.9 73 40-126 220-293 (309)
387 PLN02428 lipoic acid synthase 35.2 1.7E+02 0.0037 26.3 7.1 69 60-138 259-327 (349)
388 COG0160 GabT 4-aminobutyrate a 35.2 62 0.0013 30.1 4.5 65 67-145 207-276 (447)
389 PRK07811 cystathionine gamma-s 35.2 36 0.00077 30.7 2.9 28 108-135 159-186 (388)
390 PRK07179 hypothetical protein; 35.1 1E+02 0.0022 27.6 5.8 27 109-135 195-221 (407)
391 TIGR02006 IscS cysteine desulf 35.0 37 0.00081 30.4 3.0 32 103-134 150-181 (402)
392 TIGR00423 radical SAM domain p 34.9 56 0.0012 28.4 4.1 30 109-138 142-171 (309)
393 PRK05093 argD bifunctional N-s 34.9 54 0.0012 29.4 4.1 53 77-143 184-236 (403)
394 cd03413 CbiK_C Anaerobic cobal 34.8 36 0.00078 24.7 2.4 25 65-90 44-68 (103)
395 cd00378 SHMT Serine-glycine hy 34.7 33 0.00071 30.5 2.6 25 109-133 173-197 (402)
396 TIGR01329 cysta_beta_ly_E cyst 34.6 36 0.00077 30.5 2.8 27 108-134 144-170 (378)
397 COG2179 Predicted hydrolase of 34.6 1.1E+02 0.0024 24.6 5.2 47 71-130 21-67 (175)
398 PF13378 MR_MLE_C: Enolase C-t 34.5 32 0.0007 24.8 2.1 34 99-132 19-53 (111)
399 PRK09997 hydroxypyruvate isome 34.5 97 0.0021 25.9 5.3 40 65-128 17-56 (258)
400 TIGR03586 PseI pseudaminic aci 34.4 1.6E+02 0.0034 26.2 6.8 73 59-132 13-97 (327)
401 PRK13396 3-deoxy-7-phosphohept 34.4 2.2E+02 0.0047 25.7 7.7 64 57-132 109-172 (352)
402 TIGR01976 am_tr_V_VC1184 cyste 34.4 37 0.0008 30.1 2.9 30 104-133 165-194 (397)
403 PRK06290 aspartate aminotransf 34.4 1.1E+02 0.0024 27.6 6.1 29 110-138 197-225 (410)
404 TIGR01325 O_suc_HS_sulf O-succ 34.4 35 0.00076 30.5 2.7 28 108-135 152-179 (380)
405 PRK14327 (dimethylallyl)adenos 34.3 64 0.0014 30.5 4.5 39 110-148 345-385 (509)
406 TIGR03392 FeS_syn_CsdA cystein 34.3 35 0.00076 30.4 2.7 31 104-134 166-196 (398)
407 PTZ00413 lipoate synthase; Pro 34.3 2E+02 0.0044 26.3 7.4 69 60-138 307-375 (398)
408 PRK14332 (dimethylallyl)adenos 34.3 80 0.0017 29.2 5.1 39 110-148 284-324 (449)
409 PRK05764 aspartate aminotransf 34.3 47 0.001 29.4 3.5 27 111-137 183-209 (393)
410 cd00739 DHPS DHPS subgroup of 34.2 2.9E+02 0.0063 23.4 8.6 41 43-86 6-46 (257)
411 cd05008 SIS_GlmS_GlmD_1 SIS (S 34.1 1.5E+02 0.0032 21.4 5.7 59 71-130 19-78 (126)
412 PRK07568 aspartate aminotransf 34.1 49 0.0011 29.3 3.6 29 110-138 180-208 (397)
413 PF02581 TMP-TENI: Thiamine mo 34.0 89 0.0019 24.7 4.8 21 71-91 109-129 (180)
414 PLN02721 threonine aldolase 33.9 49 0.0011 28.6 3.6 23 111-133 157-179 (353)
415 PRK13520 L-tyrosine decarboxyl 33.9 29 0.00064 30.3 2.1 27 108-134 164-190 (371)
416 TIGR02351 thiH thiazole biosyn 33.9 59 0.0013 29.1 4.1 26 110-135 199-225 (366)
417 cd06601 GH31_lyase_GLase GLase 33.8 1.4E+02 0.0031 26.4 6.5 62 61-134 22-86 (332)
418 cd05017 SIS_PGI_PMI_1 The memb 33.8 49 0.0011 24.2 3.0 56 71-130 19-75 (119)
419 PF03932 CutC: CutC family; I 33.8 1.7E+02 0.0037 24.1 6.5 60 60-139 69-128 (201)
420 TIGR03235 DNA_S_dndA cysteine 33.8 40 0.00086 29.4 2.9 30 104-133 147-176 (353)
421 KOG0257|consensus 33.8 64 0.0014 29.6 4.2 79 60-139 101-219 (420)
422 PLN00145 tyrosine/nicotianamin 33.7 52 0.0011 30.0 3.8 28 111-138 209-236 (430)
423 COG1105 FruK Fructose-1-phosph 33.7 51 0.0011 29.1 3.5 22 111-132 145-166 (310)
424 TIGR00044 pyridoxal phosphate 33.6 63 0.0014 26.8 4.0 77 59-140 56-139 (229)
425 PLN02231 alanine transaminase 33.6 2E+02 0.0044 27.2 7.8 29 110-138 289-317 (534)
426 TIGR01437 selA_rel uncharacter 33.5 33 0.00071 30.5 2.4 27 109-135 163-189 (363)
427 PF01380 SIS: SIS domain SIS d 33.5 52 0.0011 23.9 3.2 69 60-128 14-83 (131)
428 TIGR03301 PhnW-AepZ 2-aminoeth 33.5 54 0.0012 28.3 3.7 30 105-134 135-164 (355)
429 PRK11113 D-alanyl-D-alanine ca 33.4 1.8E+02 0.0039 27.2 7.3 91 40-137 46-140 (477)
430 PRK06108 aspartate aminotransf 33.4 49 0.0011 29.1 3.5 28 110-137 176-203 (382)
431 PRK00164 moaA molybdenum cofac 33.4 1.1E+02 0.0023 26.7 5.6 19 110-128 172-190 (331)
432 TIGR02666 moaA molybdenum cofa 33.3 1.7E+02 0.0038 25.5 6.9 24 59-83 135-158 (334)
433 PRK05678 succinyl-CoA syntheta 33.3 1.7E+02 0.0036 25.6 6.7 44 64-129 77-120 (291)
434 TIGR00858 bioF 8-amino-7-oxono 33.3 33 0.00072 29.6 2.4 27 109-135 160-186 (360)
435 cd06597 GH31_transferase_CtsY 33.2 38 0.00083 30.1 2.7 69 61-134 22-107 (340)
436 PLN00175 aminotransferase fami 33.2 58 0.0013 29.4 4.0 28 111-138 206-233 (413)
437 PF06415 iPGM_N: BPG-independe 33.0 82 0.0018 26.4 4.5 58 63-137 14-72 (223)
438 PF00834 Ribul_P_3_epim: Ribul 33.0 2.7E+02 0.0059 22.7 7.9 70 65-135 94-176 (201)
439 PF03102 NeuB: NeuB family; I 33.0 62 0.0013 27.4 3.8 63 70-132 2-76 (241)
440 PRK13392 5-aminolevulinate syn 32.9 97 0.0021 27.7 5.4 27 109-135 192-218 (410)
441 PRK07324 transaminase; Validat 32.6 68 0.0015 28.4 4.3 29 110-138 171-199 (373)
442 PRK02227 hypothetical protein; 32.6 1.1E+02 0.0023 26.0 5.1 48 71-130 138-185 (238)
443 PLN02899 alpha-galactosidase 32.6 1.1E+02 0.0024 29.7 5.7 69 62-130 50-131 (633)
444 cd03412 CbiK_N Anaerobic cobal 32.5 93 0.002 23.3 4.4 26 64-90 57-82 (127)
445 TIGR01265 tyr_nico_aTase tyros 32.3 59 0.0013 29.1 3.9 28 111-138 188-215 (403)
446 PRK07777 aminotransferase; Val 32.3 58 0.0012 28.9 3.8 28 111-138 178-205 (387)
447 TIGR01822 2am3keto_CoA 2-amino 32.3 47 0.001 29.4 3.2 26 109-134 184-209 (393)
448 cd03409 Chelatase_Class_II Cla 32.2 51 0.0011 23.0 2.8 24 65-89 47-70 (101)
449 cd05005 SIS_PHI Hexulose-6-pho 32.2 2.5E+02 0.0053 22.0 7.1 61 65-130 47-107 (179)
450 PRK11359 cyclic-di-GMP phospho 32.1 1.2E+02 0.0026 29.5 6.2 86 41-135 663-758 (799)
451 PRK08776 cystathionine gamma-s 32.1 43 0.00092 30.4 2.9 28 108-135 158-185 (405)
452 PRK05434 phosphoglyceromutase; 32.1 1.5E+02 0.0032 28.1 6.5 59 63-138 96-155 (507)
453 TIGR02326 transamin_PhnW 2-ami 32.0 44 0.00095 29.3 2.9 31 104-134 138-168 (363)
454 PRK08175 aminotransferase; Val 31.9 53 0.0012 29.3 3.5 27 110-136 182-208 (395)
455 COG2355 Zn-dependent dipeptida 31.9 1.7E+02 0.0037 25.9 6.5 72 60-143 105-176 (313)
456 TIGR03539 DapC_actino succinyl 31.8 54 0.0012 28.8 3.5 29 110-138 160-188 (357)
457 PRK02936 argD acetylornithine 31.8 82 0.0018 27.7 4.7 52 78-143 168-219 (377)
458 cd00616 AHBA_syn 3-amino-5-hyd 31.7 41 0.00088 29.1 2.7 28 108-135 116-143 (352)
459 COG1103 Archaea-specific pyrid 31.7 48 0.001 29.0 2.9 33 102-134 163-195 (382)
460 PRK13237 tyrosine phenol-lyase 31.5 55 0.0012 30.5 3.5 23 111-133 197-219 (460)
461 cd06453 SufS_like Cysteine des 31.5 41 0.00088 29.5 2.6 26 108-133 152-177 (373)
462 PRK06348 aspartate aminotransf 31.4 64 0.0014 28.7 3.9 29 110-138 180-208 (384)
463 PRK07671 cystathionine beta-ly 31.4 47 0.001 29.8 3.1 28 108-135 147-174 (377)
464 PRK10551 phage resistance prot 31.4 83 0.0018 29.6 4.8 79 41-135 383-477 (518)
465 PRK04073 rocD ornithine--oxo-a 31.3 79 0.0017 28.2 4.5 34 111-144 206-239 (396)
466 PF02571 CbiJ: Precorrin-6x re 31.1 1E+02 0.0022 26.2 4.9 56 70-132 16-73 (249)
467 PF12996 DUF3880: DUF based on 31.1 50 0.0011 22.6 2.5 20 71-90 31-50 (79)
468 smart00195 DSPc Dual specifici 31.1 2.2E+02 0.0047 21.0 6.7 64 68-132 18-85 (138)
469 PF01276 OKR_DC_1: Orn/Lys/Arg 31.0 16 0.00035 33.6 -0.0 26 108-133 180-205 (417)
470 TIGR03700 mena_SCO4494 putativ 31.0 72 0.0016 28.4 4.1 34 104-137 180-213 (351)
471 PTZ00376 aspartate aminotransf 30.9 62 0.0013 29.0 3.8 31 110-140 194-224 (404)
472 PLN02757 sirohydrochlorine fer 30.9 1.8E+02 0.0039 22.7 5.9 50 65-131 60-111 (154)
473 COG1441 MenC O-succinylbenzoat 30.9 53 0.0011 28.0 3.0 25 108-132 240-264 (321)
474 PRK05957 aspartate aminotransf 30.9 61 0.0013 28.9 3.7 29 110-138 178-206 (389)
475 PRK11337 DNA-binding transcrip 30.9 65 0.0014 27.5 3.7 68 63-130 152-219 (292)
476 PF07555 NAGidase: beta-N-acet 30.9 1.6E+02 0.0034 26.0 6.1 66 61-134 13-78 (306)
477 PRK13957 indole-3-glycerol-pho 30.8 58 0.0013 27.8 3.3 30 111-143 137-166 (247)
478 PF08029 HisG_C: HisG, C-termi 30.8 36 0.00078 23.4 1.7 22 65-87 52-73 (75)
479 PRK06939 2-amino-3-ketobutyrat 30.8 49 0.0011 29.1 3.1 28 108-135 187-214 (397)
480 TIGR03812 tyr_de_CO2_Arch tyro 30.7 42 0.00091 29.4 2.6 27 108-134 166-192 (373)
481 PRK08133 O-succinylhomoserine 30.7 46 0.001 29.9 2.9 28 108-135 159-186 (390)
482 CHL00200 trpA tryptophan synth 30.7 1.5E+02 0.0032 25.4 5.8 26 111-136 130-155 (263)
483 PRK09082 methionine aminotrans 30.6 52 0.0011 29.3 3.2 29 110-138 181-209 (386)
484 TIGR00474 selA seryl-tRNA(sec) 30.6 37 0.0008 31.5 2.3 24 110-133 230-253 (454)
485 PRK10874 cysteine sulfinate de 30.6 48 0.001 29.5 3.0 31 104-134 169-199 (401)
486 PRK13361 molybdenum cofactor b 30.6 1.2E+02 0.0027 26.5 5.6 59 67-135 105-164 (329)
487 COG0174 GlnA Glutamine synthet 30.5 3.4E+02 0.0073 25.3 8.5 70 59-128 104-182 (443)
488 TIGR02631 xylA_Arthro xylose i 30.5 1.5E+02 0.0033 26.8 6.2 61 52-130 21-86 (382)
489 PRK11658 UDP-4-amino-4-deoxy-L 30.3 39 0.00085 30.2 2.3 29 108-136 131-159 (379)
490 TIGR01264 tyr_amTase_E tyrosin 30.3 61 0.0013 28.9 3.6 28 111-138 187-214 (401)
491 PRK08064 cystathionine beta-ly 30.2 51 0.0011 29.7 3.1 27 108-134 151-177 (390)
492 PRK07810 O-succinylhomoserine 30.1 48 0.001 30.0 2.9 29 107-135 167-195 (403)
493 TIGR02127 pyrF_sub2 orotidine 29.9 59 0.0013 27.8 3.3 32 111-142 72-103 (261)
494 PRK07683 aminotransferase A; V 29.8 66 0.0014 28.6 3.7 28 110-137 179-206 (387)
495 PF15614 WHIM3: WSTF, HB1, Itc 29.8 36 0.00078 21.2 1.4 20 108-127 4-24 (46)
496 PRK05965 hypothetical protein; 29.7 2.5E+02 0.0055 25.9 7.6 57 77-147 215-271 (459)
497 PRK06225 aspartate aminotransf 29.7 63 0.0014 28.6 3.6 26 110-135 175-200 (380)
498 TIGR01979 sufS cysteine desulf 29.7 46 0.00099 29.6 2.7 31 104-134 168-198 (403)
499 TIGR00709 dat 2,4-diaminobutyr 29.6 84 0.0018 28.8 4.4 55 77-145 206-260 (442)
500 TIGR03402 FeS_nifS cysteine de 29.6 48 0.001 29.2 2.8 30 105-134 146-175 (379)
No 1
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.6e-38 Score=296.33 Aligned_cols=159 Identities=36% Similarity=0.778 Sum_probs=142.1
Q ss_pred CCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHH
Q psy8670 34 PLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKD 113 (224)
Q Consensus 34 ~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~ 113 (224)
.+.||+++|||||++++|.++++++.|+|+|++++| +||++||||+|||+|+++++..++||++.||++|||+|||+++
T Consensus 4 ~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~l-dyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d 82 (551)
T PRK10933 4 LPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRL-DYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDD 82 (551)
T ss_pred cchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHhh-HHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHH
Confidence 467999999999999999999999999999999999 9999999999999999998877799999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCC------------------cceeecc
Q psy8670 114 FETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGV------------------GAVWISP 175 (224)
Q Consensus 114 ~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~------------------~~~w~~p 175 (224)
|++||++||++||+||+|+|+||+|.+|+||+++....++|.+||+|.+..+... ...|+..
T Consensus 83 ~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~ 162 (551)
T PRK10933 83 FDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLH 162 (551)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEee
Confidence 9999999999999999999999999999999999877889999999876321110 1234455
Q ss_pred cccCCCCCCCCcchhhHH
Q psy8670 176 IFKSPMADFGYDISDYLR 193 (224)
Q Consensus 176 ~f~~~~~dlny~n~d~~~ 193 (224)
.|...++|+|++||++++
T Consensus 163 ~f~~~~pdLn~~np~V~~ 180 (551)
T PRK10933 163 LFAPEQADLNWENPAVRA 180 (551)
T ss_pred cccccCCccCCCCHHHHH
Confidence 566678999999999876
No 2
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=8e-38 Score=291.50 Aligned_cols=156 Identities=44% Similarity=0.853 Sum_probs=141.2
Q ss_pred cCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFET 116 (224)
Q Consensus 37 w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~ 116 (224)
||++++||||++++|.++++++.|+|+|++++| +||++|||++|||+|+++++...+||++.||++|||+|||+++|++
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l-~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~ 79 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKL-DYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEE 79 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHhH-HHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999877789999999999999999999999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhccc---C------C--------CcceeecccccC
Q psy8670 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHD---L------G--------VGAVWISPIFKS 179 (224)
Q Consensus 117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~---l------G--------~~~~w~~p~f~~ 179 (224)
||++||++||+||+|+|+|||+.+|+||++++.+.++|.+||+|.+... . | ....|+...|..
T Consensus 80 lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~ 159 (543)
T TIGR02403 80 LVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDK 159 (543)
T ss_pred HHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCC
Confidence 9999999999999999999999999999999877889999999875321 0 0 123455566777
Q ss_pred CCCCCCCcchhhHH
Q psy8670 180 PMADFGYDISDYLR 193 (224)
Q Consensus 180 ~~~dlny~n~d~~~ 193 (224)
.+||+||+||++++
T Consensus 160 ~~pdln~~np~v~~ 173 (543)
T TIGR02403 160 TQADLNWENPEVRE 173 (543)
T ss_pred cCCccCCCCHHHHH
Confidence 88999999999876
No 3
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=9.8e-37 Score=284.24 Aligned_cols=157 Identities=39% Similarity=0.730 Sum_probs=137.3
Q ss_pred ccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHH
Q psy8670 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFE 115 (224)
Q Consensus 36 ~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~ 115 (224)
.||++++||||++++|.++++++.|+|+|++++| +||++||||+|||+|+++++..++||++.||++|||+|||+++|+
T Consensus 1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~L-dyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~ 79 (539)
T TIGR02456 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKL-DYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFK 79 (539)
T ss_pred CccccceEEEEehhHhhcCCCCCccCHHHHHHhH-HHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHH
Confidence 5999999999999999999999999999999999 999999999999999999987789999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC-CCCccccccchhccc--CC--------C---------cceeecc
Q psy8670 116 TLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN-IPPYKCASLLARLHD--LG--------V---------GAVWISP 175 (224)
Q Consensus 116 ~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~-~~~~~~~f~w~~~~~--lG--------~---------~~~w~~p 175 (224)
+||++||++||+||+|+|+||+|.+|+||++++.+ +++|.+||+|.+... .+ . ...|+..
T Consensus 80 ~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~ 159 (539)
T TIGR02456 80 DFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWH 159 (539)
T ss_pred HHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEe
Confidence 99999999999999999999999999999998865 678999999854211 00 0 1122223
Q ss_pred cccCCCCCCCCcchhhHH
Q psy8670 176 IFKSPMADFGYDISDYLR 193 (224)
Q Consensus 176 ~f~~~~~dlny~n~d~~~ 193 (224)
.|...+|++||+|+++++
T Consensus 160 ~f~~~~pdln~~np~vr~ 177 (539)
T TIGR02456 160 RFFSHQPDLNYDNPAVHD 177 (539)
T ss_pred cccCCCCccCCCCHHHHH
Confidence 345578999999999875
No 4
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=2.3e-36 Score=284.44 Aligned_cols=154 Identities=28% Similarity=0.542 Sum_probs=131.4
Q ss_pred CCCCccCCCceEEEEecccccCcCCC-----------------------------------CCCCHHHHHHHHHHHHHHc
Q psy8670 32 QEPLEWWQTSVFYHLYPRSFKDSNGD-----------------------------------GVGDLKGMIEKLPEHLHDL 76 (224)
Q Consensus 32 ~~~~~w~~~~viY~i~~~~f~~~~~~-----------------------------------~~g~l~~~~~~l~~~l~~l 76 (224)
..+|+|++++|||||+|++|.++++. -+|+|+||+++| +||++|
T Consensus 113 ~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kL-dYL~~L 191 (598)
T PRK10785 113 DQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKL-PYLKKL 191 (598)
T ss_pred CCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHH-HHHHHc
Confidence 46789999999999999999876541 048999999999 999999
Q ss_pred CCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC------
Q psy8670 77 GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN------ 150 (224)
Q Consensus 77 G~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~------ 150 (224)
|||+|||+||+++++ +|||++.||++|||+|||+++|++||++||++|||||+|+|+|||+.+|+||+....+
T Consensus 192 Gv~~I~L~Pif~s~s-~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~ 270 (598)
T PRK10785 192 GVTALYLNPIFTAPS-VHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACH 270 (598)
T ss_pred CCCEEEeCCcccCCC-CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhcccccccc
Confidence 999999999999874 5999999999999999999999999999999999999999999999999999876532
Q ss_pred --CCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670 151 --IPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 151 --~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~ 193 (224)
.++|.+||.|... |....|. .-..+|++|+.|+++++
T Consensus 271 ~~~spy~dwf~~~~~---~~~~~w~---g~~~lPdLN~~np~v~~ 309 (598)
T PRK10785 271 HPDSPWRDWYSFSDD---GRALDWL---GYASLPKLDFQSEEVVN 309 (598)
T ss_pred CCCCCcceeeEECCC---CCcCCcC---CCCcCccccCCCHHHHH
Confidence 4789999987542 1111121 12358999999999776
No 5
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.98 E-value=5.9e-32 Score=248.53 Aligned_cols=159 Identities=43% Similarity=0.784 Sum_probs=138.2
Q ss_pred ceEEEEecccccCcCC------CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHH
Q psy8670 41 SVFYHLYPRSFKDSNG------DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDF 114 (224)
Q Consensus 41 ~viY~i~~~~f~~~~~------~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~ 114 (224)
+++||+++++|.++++ ++.|+|+|++++| +||++|||++|||+|+++++..++||++.||+.+||.+||+++|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~L-dYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~ 79 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKL-DYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDF 79 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhh-hHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHH
Confidence 4799999999999998 8889999999999 99999999999999999997788999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCC-Ccc-ccccchhccc------------CCC------cceeec
Q psy8670 115 ETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK-CASLLARLHD------------LGV------GAVWIS 174 (224)
Q Consensus 115 ~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~-~~~-~~f~w~~~~~------------lG~------~~~w~~ 174 (224)
++|++++|++||+||+|+|+||+|.+|+||+++..... +.. +||+|.+... .|. ...++.
T Consensus 80 ~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (505)
T COG0366 80 KELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYL 159 (505)
T ss_pred HHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEE
Confidence 99999999999999999999999999999999997653 343 8999865311 111 235777
Q ss_pred ccccCCCCCCCCcchhhHH-HHHHHhh
Q psy8670 175 PIFKSPMADFGYDISDYLR-IKILLDF 200 (224)
Q Consensus 175 p~f~~~~~dlny~n~d~~~-i~ii~d~ 200 (224)
+.|...++|+|+.|+++++ +.-++.+
T Consensus 160 ~~~~~~~~dln~~n~~v~~~~~~~~~~ 186 (505)
T COG0366 160 HLFSSEQPDLNWENPEVREELLDVVKF 186 (505)
T ss_pred EecCCCCCCcCCCCHHHHHHHHHHHHH
Confidence 7888889999999999887 3324444
No 6
>KOG0471|consensus
Probab=99.97 E-value=6.4e-32 Score=251.36 Aligned_cols=159 Identities=40% Similarity=0.710 Sum_probs=143.9
Q ss_pred CCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHH
Q psy8670 34 PLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKD 113 (224)
Q Consensus 34 ~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~ 113 (224)
.++||++.++|||++++|+++++++.|+++|+.++| +||+++|||+||++|+++++..++||.+.||+.|+|+|||+++
T Consensus 11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kl-dyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~ed 89 (545)
T KOG0471|consen 11 SPDWWKTESIYQIYPDSFADSDGDGVGDLKGITSKL-DYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEED 89 (545)
T ss_pred CchhhhcCceeEEeccccccccCCCccccccchhhh-hHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHH
Confidence 578999999999999999999999999999999999 9999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccC-----------------------CCcc
Q psy8670 114 FETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDL-----------------------GVGA 170 (224)
Q Consensus 114 ~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~l-----------------------G~~~ 170 (224)
|++|++++|++||++|+|+|+||++..++||......+..|.+||.|.++... +...
T Consensus 90 f~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~ 169 (545)
T KOG0471|consen 90 FKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQ 169 (545)
T ss_pred HHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCccccccc
Confidence 99999999999999999999999999999999998776569999999876421 1134
Q ss_pred eeecccccCCCCCCCCcchhhHH
Q psy8670 171 VWISPIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 171 ~w~~p~f~~~~~dlny~n~d~~~ 193 (224)
.++...+...++|+||.|+++++
T Consensus 170 ~~~l~~~~~~~pDln~~n~~V~~ 192 (545)
T KOG0471|consen 170 KYYLGQFAVLQPDLNYENPDVRK 192 (545)
T ss_pred ceeccchhhcCCCCCCCCHHHHH
Confidence 45555666678999999999965
No 7
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.97 E-value=1.5e-31 Score=230.25 Aligned_cols=133 Identities=42% Similarity=0.747 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
|||+||+++| +|||+|||++|||+||++++..++||++.||++|||+|||++||++||++||++||+||+|+|+||++.
T Consensus 1 Gd~~gi~~kL-dyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 1 GDFRGIIDKL-DYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp SSHHHHHHTH-HHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred CCHHHHHHhh-HHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeecccccc
Confidence 7999999999 999999999999999999876789999999999999999999999999999999999999999999999
Q ss_pred cchhHHhhhc-CCCCccccccchhc--ccC------CCcceeec------ccccCCCCCCCCcchhhHH
Q psy8670 140 QHEWFKKSLA-NIPPYKCASLLARL--HDL------GVGAVWIS------PIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 140 ~~~w~~~~~~-~~~~~~~~f~w~~~--~~l------G~~~~w~~------p~f~~~~~dlny~n~d~~~ 193 (224)
+++||+.... ...++.+||.|.+. ... +....|.. ..+...++++|+.|+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~ 148 (316)
T PF00128_consen 80 DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVRE 148 (316)
T ss_dssp TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHH
T ss_pred ccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 9999998886 45568999998643 111 11222332 1234567999999999776
No 8
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.97 E-value=2.8e-30 Score=235.94 Aligned_cols=149 Identities=26% Similarity=0.356 Sum_probs=123.2
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEcCcc-cCCCCCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670 39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPE-HLHDLGVGAVWISPIF-KSPMADFGYDISDYLSFEPLFGDLKDFET 116 (224)
Q Consensus 39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~-~l~~lG~~~i~l~Pi~-~~~~~~~gY~~~d~~~v~~~~G~~~~~~~ 116 (224)
++.++...|.+++.+ |+|+|++++| + ||+++ |++|||+|+| +++.+++||+|.||++|||+|||++||++
T Consensus 2 ~n~~~litY~Ds~~~------GdL~gl~~kL-d~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~ 73 (495)
T PRK13840 2 KNKVQLITYADRLGD------GGLKSLTALL-DGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKA 73 (495)
T ss_pred CCceEEEEeccCCCC------CCHhHHHHHH-HHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHH
Confidence 467888888888752 7999999999 9 59999 9999999999 55667899999999999999999999999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhcc-c---------------CCC----------
Q psy8670 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLH-D---------------LGV---------- 168 (224)
Q Consensus 117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~-~---------------lG~---------- 168 (224)
|++ ||+||+|+|+||||.+|+||++++++ +++|.|||+|.+.. + .|.
T Consensus 74 L~~-----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~ 148 (495)
T PRK13840 74 LGK-----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADG 148 (495)
T ss_pred HHh-----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCC
Confidence 995 99999999999999999999999743 79999999985420 0 010
Q ss_pred cceeecccccCCCCCCCCcchhhHH-HHHHHhh
Q psy8670 169 GAVWISPIFKSPMADFGYDISDYLR-IKILLDF 200 (224)
Q Consensus 169 ~~~w~~p~f~~~~~dlny~n~d~~~-i~ii~d~ 200 (224)
...|+...|...|+||||+||++++ +.-|+.+
T Consensus 149 ~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~f 181 (495)
T PRK13840 149 KTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDR 181 (495)
T ss_pred CceEEeccCCcccceeCCCCHHHHHHHHHHHHH
Confidence 1245555688889999999999976 3334444
No 9
>PRK09505 malS alpha-amylase; Reviewed
Probab=99.96 E-value=6.1e-29 Score=235.47 Aligned_cols=110 Identities=35% Similarity=0.583 Sum_probs=98.2
Q ss_pred CCCCCCCccCCCceEEEEecccccCcCC----------CC--------CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC
Q psy8670 29 VPIQEPLEWWQTSVFYHLYPRSFKDSNG----------DG--------VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP 90 (224)
Q Consensus 29 ~~~~~~~~w~~~~viY~i~~~~f~~~~~----------~~--------~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~ 90 (224)
+...+.+.||++++||||++++|.++++ ++ +|+|+|++++| +||++||||+|||+|++++.
T Consensus 178 ~~~~~~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kL-dyl~~LGv~aIwlsPi~~~~ 256 (683)
T PRK09505 178 ETEAAAPFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKL-DYLQQLGVNALWISSPLEQI 256 (683)
T ss_pred ccCCCCChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhh-HHHHHcCCCEEEeCcccccc
Confidence 3344667889999999999999987762 11 48999999999 99999999999999999862
Q ss_pred --------------CCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 91 --------------MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 91 --------------~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
...+||.+.||+.|||+|||++||++||++||++||+||+|+|+||++.
T Consensus 257 ~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~ 319 (683)
T PRK09505 257 HGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGY 319 (683)
T ss_pred ccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcc
Confidence 2468999999999999999999999999999999999999999999995
No 10
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.96 E-value=1.6e-29 Score=229.76 Aligned_cols=144 Identities=27% Similarity=0.415 Sum_probs=119.3
Q ss_pred ecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCC
Q psy8670 47 YPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGI 126 (224)
Q Consensus 47 ~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi 126 (224)
...+|.|+.+++.|+|+++.+ .||++ ||++|||+|+|++++ ++||+|.||++|||+|||++||++|+++ |
T Consensus 4 ~lity~Ds~g~glgdl~g~l~---~yL~~-~v~~i~LlPffps~s-D~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~ 73 (470)
T TIGR03852 4 MLITYADSLGKNLKELNKVLE---NYFKD-AVGGVHLLPFFPSTG-DRGFAPMDYTEVDPAFGDWSDVEALSEK-----Y 73 (470)
T ss_pred eEEEecCCCCCChhhHHHHHH---HHHHH-hCCEEEECCCCcCCC-CCCcCchhhceeCcccCCHHHHHHHHHh-----h
Confidence 345666777788889888887 49999 799999999999985 8999999999999999999999999998 6
Q ss_pred EEEEecCCCCCCccchhHHhhhcC--CCCcccccc-----chhccc----C------------------CCcceeecccc
Q psy8670 127 KILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASL-----LARLHD----L------------------GVGAVWISPIF 177 (224)
Q Consensus 127 ~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~-----w~~~~~----l------------------G~~~~w~~p~f 177 (224)
+||+|+|+||||.+|+||++++++ +++|.|||+ |.+..+ . .....|+...|
T Consensus 74 kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF 153 (470)
T TIGR03852 74 YLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTF 153 (470)
T ss_pred hHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccC
Confidence 999999999999999999999965 799999998 443210 0 01236777788
Q ss_pred cCCCCCCCCcchhhHH-HHHHHhh
Q psy8670 178 KSPMADFGYDISDYLR-IKILLDF 200 (224)
Q Consensus 178 ~~~~~dlny~n~d~~~-i~ii~d~ 200 (224)
...|+||||+|+.+++ +.-|+.+
T Consensus 154 ~~~QpDLN~~np~v~e~i~~il~f 177 (470)
T TIGR03852 154 GEEQIDLDVTSETTKRFIRDNLEN 177 (470)
T ss_pred CccccccCCCCHHHHHHHHHHHHH
Confidence 8999999999999876 4344444
No 11
>smart00642 Aamy Alpha-amylase domain.
Probab=99.95 E-value=2.3e-28 Score=195.73 Aligned_cols=94 Identities=57% Similarity=1.044 Sum_probs=91.3
Q ss_pred EEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC---CCCCCCccCCCCcCCCCCCHHHHHHHHHHH
Q psy8670 45 HLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM---ADFGYDISDYLSFEPLFGDLKDFETLKERL 121 (224)
Q Consensus 45 ~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~---~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~ 121 (224)
||++++|.++++++.|+|++++++| +||++|||++|||+|++++.. .++||++.||++++|+|||++||++||++|
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~l-~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~ 79 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEKL-DYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAA 79 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHHH-HHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHH
Confidence 6889999999999999999999999 999999999999999999985 679999999999999999999999999999
Q ss_pred HHcCCEEEEecCCCCCCc
Q psy8670 122 HALGIKILLDFVPNHTSN 139 (224)
Q Consensus 122 h~~gi~vilD~v~nh~~~ 139 (224)
|++||+||+|+|+||++.
T Consensus 80 h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 80 HARGIKVILDVVINHTSD 97 (166)
T ss_pred HHCCCEEEEEECCCCCCC
Confidence 999999999999999998
No 12
>PRK12313 glycogen branching enzyme; Provisional
Probab=99.95 E-value=1.1e-27 Score=227.29 Aligned_cols=106 Identities=23% Similarity=0.461 Sum_probs=97.8
Q ss_pred CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670 38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET 116 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~ 116 (224)
.+..+|||+|+++|+..++++.|+|++++++|++|||+||||+||||||++++. .+|||++.||++++|+|||++||++
T Consensus 145 ~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~ 224 (633)
T PRK12313 145 DRPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMY 224 (633)
T ss_pred CCCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHH
Confidence 466899999999999887777899999999966999999999999999999864 4799999999999999999999999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCccchh
Q psy8670 117 LKERLHALGIKILLDFVPNHTSNQHEW 143 (224)
Q Consensus 117 lv~~~h~~gi~vilD~v~nh~~~~~~w 143 (224)
||++||++||+||||+|+||++.++..
T Consensus 225 lv~~~H~~Gi~VilD~V~nH~~~~~~~ 251 (633)
T PRK12313 225 LVDALHQNGIGVILDWVPGHFPKDDDG 251 (633)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc
Confidence 999999999999999999999987543
No 13
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=99.95 E-value=2.2e-27 Score=221.22 Aligned_cols=102 Identities=29% Similarity=0.489 Sum_probs=95.5
Q ss_pred CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670 38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET 116 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~ 116 (224)
+++.+|||+|++.|+. .|+|++++++| +||++||||+|||+||++.+. .+|||++.+|++++++|||++||++
T Consensus 91 ~~~~viYE~hv~~f~~-----~G~~~gi~~~l-~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~ 164 (542)
T TIGR02402 91 LEEAVIYELHVGTFTP-----EGTFDAAIEKL-PYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKA 164 (542)
T ss_pred ccccEEEEEEhhhcCC-----CCCHHHHHHhh-HHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHH
Confidence 6889999999999986 69999999999 999999999999999998763 5799999999999999999999999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670 117 LKERLHALGIKILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~ 145 (224)
||++||++||+||+|+|+||++.++.++.
T Consensus 165 lV~~aH~~Gi~VilD~V~NH~~~~~~~~~ 193 (542)
T TIGR02402 165 LVDAAHGLGLGVILDVVYNHFGPEGNYLP 193 (542)
T ss_pred HHHHHHHCCCEEEEEEccCCCCCcccccc
Confidence 99999999999999999999998776654
No 14
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.94 E-value=8.7e-27 Score=215.44 Aligned_cols=168 Identities=20% Similarity=0.296 Sum_probs=134.0
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHH--HHHHHHHHHHcCCCeEEEcCcccC---------CCCCCCCCccCCCCcCCC
Q psy8670 39 QTSVFYHLYPRSFKDSNGDGVGDLKGM--IEKLPEHLHDLGVGAVWISPIFKS---------PMADFGYDISDYLSFEPL 107 (224)
Q Consensus 39 ~~~viY~i~~~~f~~~~~~~~g~l~~~--~~~l~~~l~~lG~~~i~l~Pi~~~---------~~~~~gY~~~d~~~v~~~ 107 (224)
.-++++.++|.++....+... |..+ ..-. +||++|||++|||+|++++ +..+.||+++|| .|||.
T Consensus 50 ~a~~W~~~~P~s~i~~~~~s~--~~~L~~~~~w-dyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~-~Idp~ 125 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEGCSV--LEALADDALW-KALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISF-DIDPL 125 (688)
T ss_pred hcCeeEEecchhhcCCCCCcH--HHHhcChHHH-HHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccC-ccCcc
Confidence 347899999999975443321 2222 2334 9999999999999999999 777899999995 99999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccc-----------cchhcccC----------
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCAS-----------LLARLHDL---------- 166 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f-----------~w~~~~~l---------- 166 (224)
|||++||++|+++||++||+||+|+|+||||..|+ |+.+..+.++|++|| +|.+..+.
T Consensus 126 ~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~ 204 (688)
T TIGR02455 126 LGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQ 204 (688)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHH
Confidence 99999999999999999999999999999999999 888887799999999 77663221
Q ss_pred ----------------------C------------------CcceeecccccCCCCCCCCcchhhHHHHHHH-hhcccCC
Q psy8670 167 ----------------------G------------------VGAVWISPIFKSPMADFGYDISDYLRIKILL-DFVPNHT 205 (224)
Q Consensus 167 ----------------------G------------------~~~~w~~p~f~~~~~dlny~n~d~~~i~ii~-d~v~nh~ 205 (224)
| ....||.+.|.+.+|+|||.||.+-..+.|+ |.+
T Consensus 205 ~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal---- 280 (688)
T TIGR02455 205 CDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDAL---- 280 (688)
T ss_pred HHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHH----
Confidence 1 1223555778888999999999977777766 653
Q ss_pred CCCcHHHHHhhcC
Q psy8670 206 SNQHEWFKKSLAN 218 (224)
Q Consensus 206 ~~~~~W~~~~~~~ 218 (224)
|.|.+.+++|
T Consensus 281 ---~~w~~lG~~G 290 (688)
T TIGR02455 281 ---HAIDCLGARG 290 (688)
T ss_pred ---HHHHHhcccc
Confidence 4566665554
No 15
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.94 E-value=2.7e-26 Score=220.47 Aligned_cols=107 Identities=22% Similarity=0.437 Sum_probs=97.3
Q ss_pred CCCceEEEEecccccCc-CCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHH
Q psy8670 38 WQTSVFYHLYPRSFKDS-NGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFE 115 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~-~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~ 115 (224)
.+..+|||+|+++|+.. ++++.|+|++++++|++|||+||||+||||||++++. .+|||++.||++++|+|||++||+
T Consensus 239 ~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk 318 (726)
T PRK05402 239 DAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFR 318 (726)
T ss_pred cCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHH
Confidence 45689999999999876 5666799999999966999999999999999999764 469999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670 116 TLKERLHALGIKILLDFVPNHTSNQHEWF 144 (224)
Q Consensus 116 ~lv~~~h~~gi~vilD~v~nh~~~~~~w~ 144 (224)
+||++||++||+||||+|+||++.++..+
T Consensus 319 ~lV~~~H~~Gi~VilD~V~NH~~~~~~~~ 347 (726)
T PRK05402 319 YFVDACHQAGIGVILDWVPAHFPKDAHGL 347 (726)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCccch
Confidence 99999999999999999999998876543
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=99.94 E-value=2.3e-26 Score=217.70 Aligned_cols=144 Identities=18% Similarity=0.321 Sum_probs=108.9
Q ss_pred CCCceEEEEecccccCcCCC----CCCCHHHHHHH--HHHHHHHcCCCeEEEcCcccCCC----------CCCCCCccCC
Q psy8670 38 WQTSVFYHLYPRSFKDSNGD----GVGDLKGMIEK--LPEHLHDLGVGAVWISPIFKSPM----------ADFGYDISDY 101 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~~----~~g~l~~~~~~--l~~~l~~lG~~~i~l~Pi~~~~~----------~~~gY~~~d~ 101 (224)
+++.+|||+|++.|+..+++ ..|++.+++++ | +|||+||||+|||+||+++.. .+|||++.||
T Consensus 148 ~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~L-dYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~y 226 (658)
T PRK03705 148 WGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMI-AYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAM 226 (658)
T ss_pred ccccEEEEEehhhhcccCCCCCccccccHHHhhcccch-HHHHHcCCCEEEecCcccCCCcccccccccccccCcccccc
Confidence 78999999999999865433 35999999974 8 999999999999999998642 4699999999
Q ss_pred CCcCCCCCCH-----HHHHHHHHHHHHcCCEEEEecCCCCCCcc---chhHHhhhcCCCCccccccchhcccCCCcceee
Q psy8670 102 LSFEPLFGDL-----KDFETLKERLHALGIKILLDFVPNHTSNQ---HEWFKKSLANIPPYKCASLLARLHDLGVGAVWI 173 (224)
Q Consensus 102 ~~v~~~~G~~-----~~~~~lv~~~h~~gi~vilD~v~nh~~~~---~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~ 173 (224)
++++++||+. +|||+||++||++||+||+|+|+||++.. ++++. ..+. ....||.... .|. +.
T Consensus 227 fa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~--~~~~-d~~~yy~~~~---~g~---~~ 297 (658)
T PRK03705 227 FALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLS--LRGI-DNRSYYWIRE---DGD---YH 297 (658)
T ss_pred cccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchh--cccC-CCccceEECC---CCC---cC
Confidence 9999999984 79999999999999999999999999963 34431 1121 1234443221 111 11
Q ss_pred cccccCCCCCCCCcchhhHH
Q psy8670 174 SPIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 174 ~p~f~~~~~dlny~n~d~~~ 193 (224)
. +..-.+++|+.++.+++
T Consensus 298 ~--~~g~g~~ln~~~p~Vr~ 315 (658)
T PRK03705 298 N--WTGCGNTLNLSHPAVVD 315 (658)
T ss_pred C--CCCccCcccCCCHHHHH
Confidence 1 11223689999999876
No 17
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=99.94 E-value=4.5e-26 Score=215.36 Aligned_cols=104 Identities=22% Similarity=0.462 Sum_probs=94.5
Q ss_pred cCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHH
Q psy8670 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFE 115 (224)
Q Consensus 37 w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~ 115 (224)
+.+..+|||+|+++|+. .|++++++++|++||++||||+||||||++++. .+|||++++|++++++|||++||+
T Consensus 135 ~~~~~~iYe~hv~~~~~-----~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk 209 (613)
T TIGR01515 135 YEKPVSIYELHLGSWRH-----GLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFM 209 (613)
T ss_pred ccCCceEEEEehhhccC-----CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHH
Confidence 34467999999999975 399999999966999999999999999999864 469999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670 116 TLKERLHALGIKILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 116 ~lv~~~h~~gi~vilD~v~nh~~~~~~w~~ 145 (224)
+||++||++||+||+|+|+||++.++..+.
T Consensus 210 ~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~ 239 (613)
T TIGR01515 210 YFVDACHQAGIGVILDWVPGHFPKDDHGLA 239 (613)
T ss_pred HHHHHHHHCCCEEEEEecccCcCCccchhh
Confidence 999999999999999999999998766553
No 18
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=99.94 E-value=4.1e-26 Score=217.26 Aligned_cols=149 Identities=24% Similarity=0.386 Sum_probs=111.5
Q ss_pred cCCCceEEEEecccccCcCCC----CCCCHHHHHHH--HHHHHHHcCCCeEEEcCcccCCC----------CCCCCCccC
Q psy8670 37 WWQTSVFYHLYPRSFKDSNGD----GVGDLKGMIEK--LPEHLHDLGVGAVWISPIFKSPM----------ADFGYDISD 100 (224)
Q Consensus 37 w~~~~viY~i~~~~f~~~~~~----~~g~l~~~~~~--l~~~l~~lG~~~i~l~Pi~~~~~----------~~~gY~~~d 100 (224)
.|++.+|||+|+++|++.+++ ..|+|+|++++ | +|||+||||+|||+||+++.. ..|||++.|
T Consensus 152 ~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~L-dyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~ 230 (688)
T TIGR02100 152 PWEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMI-DYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLG 230 (688)
T ss_pred CccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchh-HHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccc
Confidence 368999999999999875432 46999999985 8 999999999999999998743 359999999
Q ss_pred CCCcCCCC---CCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhh-hcCCCCccccccchhcccCCCcceeeccc
Q psy8670 101 YLSFEPLF---GDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS-LANIPPYKCASLLARLHDLGVGAVWISPI 176 (224)
Q Consensus 101 ~~~v~~~~---G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~-~~~~~~~~~~f~w~~~~~lG~~~~w~~p~ 176 (224)
|++++++| |+++|||+||++||++||+||||+|+||++.++...... ..+. ....||..... . .+.+..
T Consensus 231 y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~-d~~~yy~~~~~-~---~~~~~~-- 303 (688)
T TIGR02100 231 FFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGI-DNASYYRLQPD-D---KRYYIN-- 303 (688)
T ss_pred ccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCC-CCCcceEecCC-C---CceecC--
Confidence 99999999 679999999999999999999999999999876432211 1121 12345532211 0 111111
Q ss_pred ccCCCCCCCCcchhhHH
Q psy8670 177 FKSPMADFGYDISDYLR 193 (224)
Q Consensus 177 f~~~~~dlny~n~d~~~ 193 (224)
+..-.+++|+.++.+++
T Consensus 304 ~~g~gn~ln~~~p~vr~ 320 (688)
T TIGR02100 304 DTGTGNTLNLSHPRVLQ 320 (688)
T ss_pred CCCccccccCCCHHHHH
Confidence 11113679999998876
No 19
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.92 E-value=7.7e-25 Score=207.68 Aligned_cols=104 Identities=20% Similarity=0.349 Sum_probs=96.0
Q ss_pred CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670 38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET 116 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~ 116 (224)
.+..+|||+|+++|+...++..++++++++++++|||+||||+|+|+||++.+. .+|||++.+|++++++||++++|++
T Consensus 244 ~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~ 323 (730)
T PRK12568 244 PAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQ 323 (730)
T ss_pred CCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHH
Confidence 456899999999999876666789999999977999999999999999998864 4699999999999999999999999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCccc
Q psy8670 117 LKERLHALGIKILLDFVPNHTSNQH 141 (224)
Q Consensus 117 lv~~~h~~gi~vilD~v~nh~~~~~ 141 (224)
||++||++||+||+|+|+||++.+.
T Consensus 324 lV~~~H~~Gi~VIlD~V~nH~~~d~ 348 (730)
T PRK12568 324 FVDACHRAGIGVILDWVSAHFPDDA 348 (730)
T ss_pred HHHHHHHCCCEEEEEeccccCCccc
Confidence 9999999999999999999999864
No 20
>PLN02960 alpha-amylase
Probab=99.92 E-value=1.2e-24 Score=207.65 Aligned_cols=143 Identities=17% Similarity=0.284 Sum_probs=111.0
Q ss_pred cCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHH
Q psy8670 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFE 115 (224)
Q Consensus 37 w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~ 115 (224)
+.+..+|||+|+++|+. ..+.|+++++++++++||++||||+||||||++.+. .+|||++++|++++++|||+++|+
T Consensus 392 ~~~~~vIYElHvg~~~~--e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk 469 (897)
T PLN02960 392 VPKSLRIYECHVGISGS--EPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFK 469 (897)
T ss_pred CCCCcEEEEEecccccC--CCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHH
Confidence 55789999999998853 345789999998844999999999999999998753 569999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670 116 TLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 116 ~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~ 193 (224)
+||++||++||+||+|+|+||++.++.+......+. ..-||. .. ..|....|.+ ..+||+++++++
T Consensus 470 ~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~--~~~Yf~-~~--~~g~~~~WG~-------~~fNy~~~eVr~ 535 (897)
T PLN02960 470 RLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGS--NDCYFH-SG--KRGHHKRWGT-------RMFKYGDHEVLH 535 (897)
T ss_pred HHHHHHHHCCCEEEEEecccccCCccccchhhcCCC--ccceee-cC--CCCccCCCCC-------cccCCCCHHHHH
Confidence 999999999999999999999999865433223331 112332 11 1222222322 458999998776
No 21
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.92 E-value=1.9e-24 Score=204.34 Aligned_cols=106 Identities=24% Similarity=0.454 Sum_probs=96.1
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHHH
Q psy8670 39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETL 117 (224)
Q Consensus 39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~l 117 (224)
+..+|||+|+++|+....+..+++++++++|++|||+||||+|+|||+++.+. .+|||++.+|++++++||+++||++|
T Consensus 143 ~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~l 222 (639)
T PRK14706 143 QPISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYL 222 (639)
T ss_pred CCcEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHH
Confidence 45899999999998765555689999999987999999999999999999854 46999999999999999999999999
Q ss_pred HHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670 118 KERLHALGIKILLDFVPNHTSNQHEWF 144 (224)
Q Consensus 118 v~~~h~~gi~vilD~v~nh~~~~~~w~ 144 (224)
|++||++||+||+|+|+||++.+..++
T Consensus 223 v~~~H~~gi~VilD~v~nH~~~~~~~l 249 (639)
T PRK14706 223 VNHLHGLGIGVILDWVPGHFPTDESGL 249 (639)
T ss_pred HHHHHHCCCEEEEEecccccCcchhhh
Confidence 999999999999999999999876544
No 22
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=99.92 E-value=6.2e-25 Score=219.53 Aligned_cols=106 Identities=27% Similarity=0.477 Sum_probs=91.7
Q ss_pred CCCceEEEEecccccCcCCC----CCCCHHHHH--HHHHHHHHHcCCCeEEEcCcccCCC----------CCCCCCccCC
Q psy8670 38 WQTSVFYHLYPRSFKDSNGD----GVGDLKGMI--EKLPEHLHDLGVGAVWISPIFKSPM----------ADFGYDISDY 101 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~~----~~g~l~~~~--~~l~~~l~~lG~~~i~l~Pi~~~~~----------~~~gY~~~d~ 101 (224)
|++.+|||+|+++|+..++. ..|+++++. +.| +|||+||||+|||+||+++.. ++|||++.||
T Consensus 156 ~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~y 234 (1221)
T PRK14510 156 WDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAI-SYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAF 234 (1221)
T ss_pred cccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhH-HHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCC
Confidence 67899999999999864433 345666666 445 799999999999999998742 3489999999
Q ss_pred CCcCCCCC--CHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670 102 LSFEPLFG--DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144 (224)
Q Consensus 102 ~~v~~~~G--~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~ 144 (224)
++++|+|| +.+||++||++||++||+||||+|+|||+.++.+.
T Consensus 235 fa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~ 279 (1221)
T PRK14510 235 LAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYG 279 (1221)
T ss_pred CCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCC
Confidence 99999999 99999999999999999999999999999887664
No 23
>PLN00196 alpha-amylase; Provisional
Probab=99.92 E-value=5.8e-24 Score=192.80 Aligned_cols=99 Identities=21% Similarity=0.438 Sum_probs=86.6
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC-CCCCCHHHHHHH
Q psy8670 39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE-PLFGDLKDFETL 117 (224)
Q Consensus 39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~-~~~G~~~~~~~l 117 (224)
.+.+|+|-|.+. .-+..+|++++++++| +||++||||+|||+|++++. +++||++.||++++ ++|||.+||++|
T Consensus 23 ~~~v~~Q~F~W~---~~~~~gg~~~~i~~kl-dyL~~LGvtaIWL~P~~~s~-s~hGY~~~D~y~ld~~~fGt~~elk~L 97 (428)
T PLN00196 23 AGQVLFQGFNWE---SWKQNGGWYNFLMGKV-DDIAAAGITHVWLPPPSHSV-SEQGYMPGRLYDLDASKYGNEAQLKSL 97 (428)
T ss_pred CCCEEEEeeccC---CCCCCCcCHHHHHHHH-HHHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCcccCCCHHHHHHH
Confidence 357899977631 1123457999999999 99999999999999999876 46999999999999 599999999999
Q ss_pred HHHHHHcCCEEEEecCCCCCCccch
Q psy8670 118 KERLHALGIKILLDFVPNHTSNQHE 142 (224)
Q Consensus 118 v~~~h~~gi~vilD~v~nh~~~~~~ 142 (224)
|++||++||+||+|+|+||++.++.
T Consensus 98 v~~aH~~GIkVilDvV~NH~~~~~~ 122 (428)
T PLN00196 98 IEAFHGKGVQVIADIVINHRTAEHK 122 (428)
T ss_pred HHHHHHCCCEEEEEECccCcccccc
Confidence 9999999999999999999998764
No 24
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=99.92 E-value=1.3e-24 Score=200.25 Aligned_cols=102 Identities=24% Similarity=0.476 Sum_probs=87.3
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC--CCCCCCccCCC---------CcCCC
Q psy8670 39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFGYDISDYL---------SFEPL 107 (224)
Q Consensus 39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~---------~v~~~ 107 (224)
+..||.|.|-+... .+..++++|+++| +||++||||+|||+|++++.+ .++||++.||+ +|||+
T Consensus 2 ~~~~~~q~f~w~~~----~~~~~~~~I~~kl-dyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~ 76 (479)
T PRK09441 2 RNGTMMQYFEWYLP----NDGKLWNRLAERA-PELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTK 76 (479)
T ss_pred CCceEEEEEEeccC----CCccHHHHHHHHH-HHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcC
Confidence 35788887755532 2234678999999 999999999999999999853 46999999999 78999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCCCCCcc--chhHH
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQ--HEWFK 145 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~--~~w~~ 145 (224)
|||++||++||++||++||+||+|+|+||++.+ ++||+
T Consensus 77 fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~ 116 (479)
T PRK09441 77 YGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFR 116 (479)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeee
Confidence 999999999999999999999999999999964 36775
No 25
>PRK14705 glycogen branching enzyme; Provisional
Probab=99.92 E-value=2.9e-24 Score=212.47 Aligned_cols=138 Identities=22% Similarity=0.393 Sum_probs=108.5
Q ss_pred CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670 38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET 116 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~ 116 (224)
.+..+|||+|+++|+. .++++++++++++|||+||||+||||||++++. .+|||++++|++++++|||++||++
T Consensus 745 ~~p~~IYEvHvgsf~~-----~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~ 819 (1224)
T PRK14705 745 NSPMSVYEVHLGSWRL-----GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRF 819 (1224)
T ss_pred cCCcEEEEEEeccccc-----CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHH
Confidence 3568999999999976 478999999966999999999999999998864 5699999999999999999999999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~ 193 (224)
||++||++||+||+|+|+||++.++ |+.....+. ..|+. .+. ..|....|.+ ..+||.++++++
T Consensus 820 lVd~~H~~GI~VILD~V~nH~~~d~-~~l~~fdg~---~~y~~-~d~-~~g~~~~Wg~-------~~fn~~~~eVr~ 883 (1224)
T PRK14705 820 LVDSLHQAGIGVLLDWVPAHFPKDS-WALAQFDGQ---PLYEH-ADP-ALGEHPDWGT-------LIFDFGRTEVRN 883 (1224)
T ss_pred HHHHHHHCCCEEEEEeccccCCcch-hhhhhcCCC---ccccc-CCc-ccCCCCCCCC-------ceecCCCHHHHH
Confidence 9999999999999999999998774 554443332 11222 111 1232223322 358999998876
No 26
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=99.91 E-value=2.7e-24 Score=203.14 Aligned_cols=107 Identities=29% Similarity=0.527 Sum_probs=91.0
Q ss_pred CCCceEEEEecccccCcCCCC---CCCHHHHHHH-----------HHHHHHHcCCCeEEEcCcccCCC---------CCC
Q psy8670 38 WQTSVFYHLYPRSFKDSNGDG---VGDLKGMIEK-----------LPEHLHDLGVGAVWISPIFKSPM---------ADF 94 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~~~---~g~l~~~~~~-----------l~~~l~~lG~~~i~l~Pi~~~~~---------~~~ 94 (224)
+++.+|||+|++.|+...+.+ .|+|.+++++ | +||++||||+|||+||++.+. .+|
T Consensus 125 ~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~L-dyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~w 203 (605)
T TIGR02104 125 PEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGL-DYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNW 203 (605)
T ss_pred hhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHH-HHHHHcCCCEEEeCCcccccccccccCCCCCCC
Confidence 567899999999998755433 5777777665 8 999999999999999998753 359
Q ss_pred CCCccCCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEecCCCCCCc-cchhHH
Q psy8670 95 GYDISDYLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTSN-QHEWFK 145 (224)
Q Consensus 95 gY~~~d~~~v~~~~G~--------~~~~~~lv~~~h~~gi~vilD~v~nh~~~-~~~w~~ 145 (224)
||++.||++++++||+ ++|||+||++||++||+||||+|+||++. ++.+|+
T Consensus 204 GY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~ 263 (605)
T TIGR02104 204 GYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREESPFE 263 (605)
T ss_pred CCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCccc
Confidence 9999999999999987 58999999999999999999999999974 444444
No 27
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.91 E-value=6.1e-24 Score=203.01 Aligned_cols=103 Identities=27% Similarity=0.469 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
.++|++++++| +||++|||++|||+|++++ +.++|||++.||++|||+||++++|++|+++||++||+||+|+|+||+
T Consensus 12 ~~tf~~~~~~L-~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~ 90 (825)
T TIGR02401 12 GFTFDDAAALL-PYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHM 90 (825)
T ss_pred CCCHHHHHHhh-HHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 57999999999 9999999999999999986 446799999999999999999999999999999999999999999999
Q ss_pred Ccc---chhHHhhhcC--CCCccccccchh
Q psy8670 138 SNQ---HEWFKKSLAN--IPPYKCASLLAR 162 (224)
Q Consensus 138 ~~~---~~w~~~~~~~--~~~~~~~f~w~~ 162 (224)
+.+ ++||++.++. .|+|.+||.++.
T Consensus 91 a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw 120 (825)
T TIGR02401 91 AVHLEQNPWWWDVLKNGPSSAYAEYFDIDW 120 (825)
T ss_pred ccccccChHHHHHHHhCCCCCccCceEEeC
Confidence 976 8999999853 789999995443
No 28
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=99.90 E-value=3.1e-23 Score=197.26 Aligned_cols=141 Identities=20% Similarity=0.297 Sum_probs=108.1
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHHH
Q psy8670 39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETL 117 (224)
Q Consensus 39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~l 117 (224)
+..+|||+|++.|+. ....|+++++.+++++|||+||||+|+||||++.+. .+|||++.+|++++++|||++||++|
T Consensus 228 ~~~~IYE~Hvg~~~~--~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~L 305 (758)
T PLN02447 228 AALRIYEAHVGMSSE--EPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYL 305 (758)
T ss_pred CCCEEEEEeCCcccC--CCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHH
Confidence 457899999998853 335789999877644999999999999999999864 57999999999999999999999999
Q ss_pred HHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670 118 KERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 118 v~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~ 193 (224)
|++||++||+||+|+|+||++.++..-.... +.....||... ..|....|.+ ..+||.++++++
T Consensus 306 Vd~aH~~GI~VilDvV~nH~~~~~~~gl~~f--Dg~~~~Yf~~~---~~g~~~~w~~-------~~~N~~~~eVr~ 369 (758)
T PLN02447 306 IDKAHSLGLRVLMDVVHSHASKNTLDGLNGF--DGTDGSYFHSG---PRGYHWLWDS-------RLFNYGNWEVLR 369 (758)
T ss_pred HHHHHHCCCEEEEEecccccccccccccccc--CCCCccccccC---CCCCcCcCCC-------ceecCCCHHHHH
Confidence 9999999999999999999998653111111 12333566421 1232222322 358999998765
No 29
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.90 E-value=3.5e-23 Score=198.68 Aligned_cols=100 Identities=29% Similarity=0.491 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
..+|+++++++ +||++|||++|||+|++++ +.++|||++.||+.|||.+|+.++|++|+++||++||+||+|+|+||+
T Consensus 16 ~~tf~~~~~~l-~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~ 94 (879)
T PRK14511 16 GFTFDDAAELV-PYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHM 94 (879)
T ss_pred CCCHHHHHHHh-HHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 46899999999 9999999999999999987 446799999999999999999999999999999999999999999999
Q ss_pred Ccc---chhHHhhhcC--CCCcccccc
Q psy8670 138 SNQ---HEWFKKSLAN--IPPYKCASL 159 (224)
Q Consensus 138 ~~~---~~w~~~~~~~--~~~~~~~f~ 159 (224)
+.+ ++||.+.+.. .|+|.+||.
T Consensus 95 ~~~~~~n~ww~dvl~~g~~S~y~~~Fd 121 (879)
T PRK14511 95 AVGGPDNPWWWDVLEWGRSSPYADFFD 121 (879)
T ss_pred cCcCccCHHHHHHHHhCCCCCccCcee
Confidence 974 4899998853 789999994
No 30
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=99.90 E-value=2e-23 Score=205.37 Aligned_cols=104 Identities=26% Similarity=0.563 Sum_probs=91.5
Q ss_pred CCCceEEEEecccccCcCC------CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-------------------CCC
Q psy8670 38 WQTSVFYHLYPRSFKDSNG------DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-------------------PMA 92 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~------~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-------------------~~~ 92 (224)
+++++|||+|++.|+...+ ...|+|++++++| +|||+||||+||||||++. ...
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekL-dYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~y 527 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKL-DYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNY 527 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhH-HHHHHcCCCEEEEcCcccccccccccccccccccccccccc
Confidence 5789999999999985322 1359999999999 9999999999999999862 113
Q ss_pred CCCCCccCCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEecCCCCCCccch
Q psy8670 93 DFGYDISDYLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTSNQHE 142 (224)
Q Consensus 93 ~~gY~~~d~~~v~~~~G~--------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~ 142 (224)
+|||++.+|++++++||+ .+||++||++||++||+||||+|+||++..+.
T Consensus 528 nWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~ 585 (1111)
T TIGR02102 528 NWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI 585 (1111)
T ss_pred ccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc
Confidence 599999999999999997 58999999999999999999999999998764
No 31
>PLN02361 alpha-amylase
Probab=99.89 E-value=1.1e-22 Score=182.73 Aligned_cols=93 Identities=16% Similarity=0.309 Sum_probs=83.0
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHH
Q psy8670 40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119 (224)
Q Consensus 40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~ 119 (224)
+.+|+|-|-+...+ ...+++++++| +||++||||+|||+|++++.. .+||++.||+++|++|||.+||++||+
T Consensus 11 ~~v~lQ~F~W~~~~-----~~~w~~i~~kl-~~l~~lG~t~iwl~P~~~~~~-~~GY~~~d~y~~~~~~Gt~~el~~li~ 83 (401)
T PLN02361 11 REILLQAFNWESHK-----HDWWRNLEGKV-PDLAKSGFTSAWLPPPSQSLA-PEGYLPQNLYSLNSAYGSEHLLKSLLR 83 (401)
T ss_pred CcEEEEEEeccCCc-----cHHHHHHHHHH-HHHHHcCCCEEEeCCCCcCCC-CCCCCcccccccCcccCCHHHHHHHHH
Confidence 57899977544222 24789999999 999999999999999998864 599999999999999999999999999
Q ss_pred HHHHcCCEEEEecCCCCCCc
Q psy8670 120 RLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 120 ~~h~~gi~vilD~v~nh~~~ 139 (224)
+||++||+||+|+|+||++.
T Consensus 84 ~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 84 KMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHcCCEEEEEEccccccC
Confidence 99999999999999999964
No 32
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.89 E-value=8.6e-23 Score=206.01 Aligned_cols=112 Identities=31% Similarity=0.454 Sum_probs=100.5
Q ss_pred eEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHH
Q psy8670 42 VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKER 120 (224)
Q Consensus 42 viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~ 120 (224)
.+|-+.... .++|+++++++ +||++|||++|||+||+++ +.++|||++.||+.|||.||+.++|++|+++
T Consensus 745 atyrlq~~~--------~~tf~~~~~~l-~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ 815 (1693)
T PRK14507 745 ATYRLQFHK--------DFTFADAEAIL-PYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAA 815 (1693)
T ss_pred eeEEEEeCC--------CCCHHHHHHHh-HHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHH
Confidence 366665444 57999999999 9999999999999999996 5567999999999999999999999999999
Q ss_pred HHHcCCEEEEecCCCCCC---ccchhHHhhhc-C-CCCccccccchh
Q psy8670 121 LHALGIKILLDFVPNHTS---NQHEWFKKSLA-N-IPPYKCASLLAR 162 (224)
Q Consensus 121 ~h~~gi~vilD~v~nh~~---~~~~w~~~~~~-~-~~~~~~~f~w~~ 162 (224)
||++||+||+|+|+||++ .+++||++.++ + .|+|.+||.++.
T Consensus 816 ah~~Gi~vilDiV~NH~~~~~~~n~w~~dvl~~g~~S~y~~~Fdidw 862 (1693)
T PRK14507 816 LKAHGLGQLLDIVPNHMGVGGADNPWWLDVLENGPASPAADAFDIDW 862 (1693)
T ss_pred HHHCCCEEEEEecccccCCCccCCHHHHHHHHhCCCCCccCeeeecc
Confidence 999999999999999999 58999999985 3 799999997443
No 33
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.88 E-value=2.5e-22 Score=187.08 Aligned_cols=105 Identities=30% Similarity=0.563 Sum_probs=95.8
Q ss_pred CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670 38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET 116 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~ 116 (224)
++..+|||+|+.+|+. + ...|+++..+++| +||++||||+|.||||.+.+. .+|||+++.|+++..+|||+++||+
T Consensus 142 ~e~~vIYElHvGs~~~-~-~~~~~~e~a~~ll-pYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~ 218 (628)
T COG0296 142 WEPIVIYELHVGSFTP-D-RFLGYFELAIELL-PYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKA 218 (628)
T ss_pred CCCceEEEEEeeeccC-C-CCcCHHHHHHHHh-HHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHH
Confidence 5689999999999987 3 5567888888888 999999999999999999864 6799999999999999999999999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670 117 LKERLHALGIKILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~ 145 (224)
||++||++||.||||+|+||.+.+...+.
T Consensus 219 fVD~aH~~GIgViLD~V~~HF~~d~~~L~ 247 (628)
T COG0296 219 LVDAAHQAGIGVILDWVPNHFPPDGNYLA 247 (628)
T ss_pred HHHHHHHcCCEEEEEecCCcCCCCcchhh
Confidence 99999999999999999999999776654
No 34
>PLN02784 alpha-amylase
Probab=99.88 E-value=5.2e-22 Score=188.99 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=108.2
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHH
Q psy8670 40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119 (224)
Q Consensus 40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~ 119 (224)
.+..|++....|..........++++++++ +||++||||+|||+|++++. .++||++.||+++|++|||.+||++||+
T Consensus 498 ~~~~~eVmlQgF~Wds~~dg~w~~~I~ekl-dyL~~LG~taIWLpP~~~s~-s~~GY~p~D~y~lds~yGT~~ELk~LI~ 575 (894)
T PLN02784 498 TGSGFEILCQGFNWESHKSGRWYMELGEKA-AELSSLGFTVVWLPPPTESV-SPEGYMPKDLYNLNSRYGTIDELKDLVK 575 (894)
T ss_pred ccCCceEEEEeEEcCcCCCCchHHHHHHHH-HHHHHhCCCEEEeCCCCCCC-CCCCcCcccccccCcCcCCHHHHHHHHH
Confidence 455778888888744333334589999999 99999999999999999876 4599999999999999999999999999
Q ss_pred HHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccC------CCcceeecccccCCCCCCCCcchhhHH
Q psy8670 120 RLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDL------GVGAVWISPIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 120 ~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~l------G~~~~w~~p~f~~~~~dlny~n~d~~~ 193 (224)
+||++||+||+|+|+||++.. +++.......|..++.|.+.... ...+..++.-.-..++|+++.|+.+++
T Consensus 576 a~H~~GIkVIlDiViNH~ag~---f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~ 652 (894)
T PLN02784 576 SFHEVGIKVLGDAVLNHRCAH---FQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 652 (894)
T ss_pred HHHHCCCEEEEEECccccccc---ccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHH
Confidence 999999999999999999864 22211112344455555431110 001111111111246999999999886
No 35
>PLN02877 alpha-amylase/limit dextrinase
Probab=99.87 E-value=7.1e-22 Score=191.21 Aligned_cols=121 Identities=22% Similarity=0.360 Sum_probs=98.4
Q ss_pred CCCceEEEEecccccCcCC----CCCCCHHHHHHH-------HHHHHHHcCCCeEEEcCcccCC----------------
Q psy8670 38 WQTSVFYHLYPRSFKDSNG----DGVGDLKGMIEK-------LPEHLHDLGVGAVWISPIFKSP---------------- 90 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~----~~~g~l~~~~~~-------l~~~l~~lG~~~i~l~Pi~~~~---------------- 90 (224)
+.+.+|||+|++.|+..++ ...|+|.+++++ | ++|+++|||+|+|||+++..
T Consensus 337 ~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hL-k~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~ 415 (970)
T PLN02877 337 FSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHL-KKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKE 415 (970)
T ss_pred CcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHH-HHHHHcCCCEEEeCCccccCCcccccccccccccch
Confidence 5678999999999987543 245899998876 5 66666799999999998752
Q ss_pred ----------------------CCCCCCCccCCCCcCCCCCC-------HHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670 91 ----------------------MADFGYDISDYLSFEPLFGD-------LKDFETLKERLHALGIKILLDFVPNHTSNQH 141 (224)
Q Consensus 91 ----------------------~~~~gY~~~d~~~v~~~~G~-------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~ 141 (224)
..+|||+|..|+.++.+|++ ..||++||++||++||+||+|+|+||++..+
T Consensus 416 l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g 495 (970)
T PLN02877 416 LEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSG 495 (970)
T ss_pred hccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCC
Confidence 15699999999999999998 3689999999999999999999999999988
Q ss_pred hhHHhh-hcCCCCccccccch
Q psy8670 142 EWFKKS-LANIPPYKCASLLA 161 (224)
Q Consensus 142 ~w~~~~-~~~~~~~~~~f~w~ 161 (224)
+|..++ +.+. .+.||.+.
T Consensus 496 ~~~~~s~ld~~--vP~YY~r~ 514 (970)
T PLN02877 496 PFDENSVLDKI--VPGYYLRR 514 (970)
T ss_pred CcchhhcccCC--CCCceEEE
Confidence 887543 3332 33666543
No 36
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=99.87 E-value=2.6e-22 Score=189.46 Aligned_cols=103 Identities=32% Similarity=0.596 Sum_probs=91.3
Q ss_pred CCCceEEEEecccccCcCCC----CCCCHHHHHHH--HHHHHHHcCCCeEEEcCcccC----------CCCCCCCCccCC
Q psy8670 38 WQTSVFYHLYPRSFKDSNGD----GVGDLKGMIEK--LPEHLHDLGVGAVWISPIFKS----------PMADFGYDISDY 101 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~~----~~g~l~~~~~~--l~~~l~~lG~~~i~l~Pi~~~----------~~~~~gY~~~d~ 101 (224)
|+++||||+|++.|+..+++ ..||+.++++. + +|||+||||+|+|+||+.. ..++|||+|..|
T Consensus 169 ~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i-~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~f 247 (697)
T COG1523 169 WEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVII-DYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNF 247 (697)
T ss_pred ccceEEEEeeecccccCCCCCchhhccceehhccccHH-HHHHHhCCceEEEecceEEeccccccccccccccCCCcccc
Confidence 89999999999999965443 34999999999 8 9999999999999999875 125799999999
Q ss_pred CCcCCCCCC-------HHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670 102 LSFEPLFGD-------LKDFETLKERLHALGIKILLDFVPNHTSNQH 141 (224)
Q Consensus 102 ~~v~~~~G~-------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~ 141 (224)
++++++|.+ ..|||.||+++|++||+||||+|+|||+...
T Consensus 248 FAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~ 294 (697)
T COG1523 248 FAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGN 294 (697)
T ss_pred cCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCccccc
Confidence 999999854 4699999999999999999999999998653
No 37
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=99.85 E-value=4.7e-21 Score=185.56 Aligned_cols=119 Identities=24% Similarity=0.390 Sum_probs=97.0
Q ss_pred CCCceEEEEecccccCcCC----CCCCCHHHHHHH-------HHHHHHHcCCCeEEEcCcccCC----------------
Q psy8670 38 WQTSVFYHLYPRSFKDSNG----DGVGDLKGMIEK-------LPEHLHDLGVGAVWISPIFKSP---------------- 90 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~----~~~g~l~~~~~~-------l~~~l~~lG~~~i~l~Pi~~~~---------------- 90 (224)
+++.+|||+|++.|+..++ ...|+|.+++++ | ++|++||||+|+|||+|+..
T Consensus 250 ~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hL-k~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~ 328 (898)
T TIGR02103 250 FADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHL-KKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPF 328 (898)
T ss_pred CcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHH-HHHHhCCCcEEEEcChhhcCccccccccccccccch
Confidence 6789999999999985443 346899999886 5 66667899999999998642
Q ss_pred -----------------------------------------------CCCCCCCccCCCCcCCCCCC-------HHHHHH
Q psy8670 91 -----------------------------------------------MADFGYDISDYLSFEPLFGD-------LKDFET 116 (224)
Q Consensus 91 -----------------------------------------------~~~~gY~~~d~~~v~~~~G~-------~~~~~~ 116 (224)
..+|||+|..|+.++.+|++ ..||++
T Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~ 408 (898)
T TIGR02103 329 SKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFRE 408 (898)
T ss_pred hhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHH
Confidence 13699999999999999987 379999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCcccccc
Q psy8670 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASL 159 (224)
Q Consensus 117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~ 159 (224)
||++||++||+||+|+|+|||+..+++....+.+. .+.||.
T Consensus 409 mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~--~P~YY~ 449 (898)
T TIGR02103 409 MVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKI--VPGYYH 449 (898)
T ss_pred HHHHHHHCCCEEEEEeecccccccCccCccccccc--CcHhhE
Confidence 99999999999999999999999887765444432 235664
No 38
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=1.1e-20 Score=175.50 Aligned_cols=120 Identities=26% Similarity=0.448 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
=+|....+.+ +||++|||+++|++|||.+ +.+.|||+|+|+..|||.+|+.+.|.+|++++|++||.+|+|+|+||++
T Consensus 16 FtF~~A~~~l-~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMa 94 (889)
T COG3280 16 FTFADARALL-DYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMA 94 (889)
T ss_pred CCHHHHHHhh-HHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchh
Confidence 3789999999 9999999999999999987 5567999999999999999999999999999999999999999999998
Q ss_pred cc---chhHHhhhcC--CCCccccccchhcccCCCcceeecccccCC
Q psy8670 139 NQ---HEWFKKSLAN--IPPYKCASLLARLHDLGVGAVWISPIFKSP 180 (224)
Q Consensus 139 ~~---~~w~~~~~~~--~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~ 180 (224)
.. ++|+.+.++. +|.|.+||..+.....+..++-..|+.+++
T Consensus 95 v~g~~N~ww~DVLe~G~~S~ya~yFDI~W~~~~~a~gkillP~LGd~ 141 (889)
T COG3280 95 VGGHENPWWWDVLENGRDSAYANYFDIDWEEPDGAQGKILLPFLGDD 141 (889)
T ss_pred cccccChHHHHHHHhCcCccchhhcccccCCCCCcCceeeeccccch
Confidence 54 7999999964 799999997554444444666677776654
No 39
>KOG0470|consensus
Probab=99.81 E-value=8.4e-20 Score=169.91 Aligned_cols=102 Identities=30% Similarity=0.603 Sum_probs=91.3
Q ss_pred CceEEEEecccccCcCCCC--CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC-C-CCCCCCccCCCCcCCCCCCHH---
Q psy8670 40 TSVFYHLYPRSFKDSNGDG--VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-M-ADFGYDISDYLSFEPLFGDLK--- 112 (224)
Q Consensus 40 ~~viY~i~~~~f~~~~~~~--~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-~-~~~gY~~~d~~~v~~~~G~~~--- 112 (224)
+..|||+|++.|+...+.. .|.+.+++++.+++||+||+|+|+|+||++.+ . ..+||.|++|++...+|||.+
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ 308 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPC 308 (757)
T ss_pred heEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCccc
Confidence 7899999999998766542 23399999993399999999999999999993 3 479999999999999999999
Q ss_pred ---HHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670 113 ---DFETLKERLHALGIKILLDFVPNHTSNQH 141 (224)
Q Consensus 113 ---~~~~lv~~~h~~gi~vilD~v~nh~~~~~ 141 (224)
|||.||++||..||.|+||+|.||++.+.
T Consensus 309 ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~ 340 (757)
T KOG0470|consen 309 RINEFKELVDKAHSLGIEVLLDVVHSHAAKNS 340 (757)
T ss_pred chHHHHHHHHHHhhCCcEEehhhhhhhcccCc
Confidence 99999999999999999999999999854
No 40
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.74 E-value=4.2e-18 Score=168.44 Aligned_cols=88 Identities=24% Similarity=0.395 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCC----CHHHHHHHHHHHHHc-CCEEEEecC
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFG----DLKDFETLKERLHAL-GIKILLDFV 133 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G----~~~~~~~lv~~~h~~-gi~vilD~v 133 (224)
.|+|.++.++| ++|+++|+|.|||+||++.+.+++.|++.||+++||.+| +.++|++||+++|++ ||++|+|+|
T Consensus 128 mG~~~~w~~~L-~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 128 LGPLSEWEPRL-RVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred cCCHHHHHHHH-HHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 59999999999 999999999999999998877889999999999999994 899999999999996 999999999
Q ss_pred CCCCCccchhHHhh
Q psy8670 134 PNHTSNQHEWFKKS 147 (224)
Q Consensus 134 ~nh~~~~~~w~~~~ 147 (224)
+||||.+|+|+++.
T Consensus 207 ~NHTa~ds~Wl~eH 220 (1464)
T TIGR01531 207 FNHTANNSPWLLEH 220 (1464)
T ss_pred ecccccCCHHHHhC
Confidence 99999999999943
No 41
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=99.47 E-value=2e-13 Score=122.58 Aligned_cols=87 Identities=23% Similarity=0.462 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCC------HHHHHHHHHHHH-HcCCEEEEe
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGD------LKDFETLKERLH-ALGIKILLD 131 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~------~~~~~~lv~~~h-~~gi~vilD 131 (224)
.|++.++.+.| +.++++|+|.|+++|+++.+.+++.|++.|...+||.+.. .++++++|++++ +.||..|.|
T Consensus 18 ~G~~~~W~~~l-~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~D 96 (423)
T PF14701_consen 18 MGPFSDWEKHL-KVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTD 96 (423)
T ss_pred cCCHhHHHHHH-HHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEE
Confidence 59999999999 9999999999999999999888899999999999999754 379999999996 789999999
Q ss_pred cCCCCCCccchhHHh
Q psy8670 132 FVPNHTSNQHEWFKK 146 (224)
Q Consensus 132 ~v~nh~~~~~~w~~~ 146 (224)
+|+||||.+++|+++
T Consensus 97 vV~NHtA~nS~Wl~e 111 (423)
T PF14701_consen 97 VVLNHTANNSPWLRE 111 (423)
T ss_pred EeeccCcCCChHHHh
Confidence 999999999999993
No 42
>PLN03244 alpha-amylase; Provisional
Probab=99.31 E-value=1.3e-11 Score=117.26 Aligned_cols=111 Identities=18% Similarity=0.281 Sum_probs=80.4
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHH
Q psy8670 40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119 (224)
Q Consensus 40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~ 119 (224)
...||+.|+...+ ....+|+++.++++ +++|++++++|||++||++||+
T Consensus 400 ~lrIYE~HvGms~--~e~kv~ty~eF~~~-----------------------------vt~fFApssRYGTPeDLK~LVD 448 (872)
T PLN03244 400 SLRIYECHVGISG--SEPKISSFEEFTEK-----------------------------VTNFFAASSRYGTPDDFKRLVD 448 (872)
T ss_pred CceEEEEEeeecC--CCCCcccHHHHhhc-----------------------------cCcccccCcccCCHHHHHHHHH
Confidence 4569999998864 34457899988885 5689999999999999999999
Q ss_pred HHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670 120 RLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 120 ~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~ 193 (224)
+||++||+||||+|+||++.+.........+. ...||..+ ..|....|.+ ..+||.++++++
T Consensus 449 ~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt--~~~Yf~~~---~~g~~~~WGs-------~~fnyg~~EVr~ 510 (872)
T PLN03244 449 EAHGLGLLVFLDIVHSYAAADEMVGLSLFDGS--NDCYFHTG---KRGHHKHWGT-------RMFKYGDLDVLH 510 (872)
T ss_pred HHHHCCCEEEEEecCccCCCccccchhhcCCC--ccceeccC---CCCccCCCCC-------ceecCCCHHHHH
Confidence 99999999999999999998765433333332 12355421 1232333322 357888888776
No 43
>KOG2212|consensus
Probab=99.15 E-value=6.9e-11 Score=102.66 Aligned_cols=91 Identities=21% Similarity=0.316 Sum_probs=79.2
Q ss_pred cCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-----CC--CCCCccCCCCcCCCCC
Q psy8670 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-----AD--FGYDISDYLSFEPLFG 109 (224)
Q Consensus 37 w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-----~~--~gY~~~d~~~v~~~~G 109 (224)
|-.+..|.++|.+.+. ++..+++..|+.-|+.+|+++|+.|.-. .. ..|+|++| +++.+-|
T Consensus 25 ~~~R~tmVHLFEWKW~-----------DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvSY-KL~tRSG 92 (504)
T KOG2212|consen 25 QQGRTTIVHLFEWKWV-----------DIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSY-KLCTRSG 92 (504)
T ss_pred hcCcceEEEEEEeehH-----------HHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccceE-EeeccCC
Confidence 3446889999988874 4999997889999999999999988621 11 36999998 9999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
.++||+.||++|.+-|+|+++|+|+||++.
T Consensus 93 NE~eF~dMV~RCN~VGVRiyVDvv~NHM~g 122 (504)
T KOG2212|consen 93 NEDEFRDMVTRCNNVGVRIYVDAVINHMCG 122 (504)
T ss_pred CHHHHHHHHHHhhccceEEEehhhhhhhcc
Confidence 999999999999999999999999999984
No 44
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=98.90 E-value=1.2e-09 Score=100.22 Aligned_cols=56 Identities=34% Similarity=0.619 Sum_probs=51.2
Q ss_pred CCcceeecccccCCCCCCCCcchhhHH-----------------HHHHHhhcccCCCCCcHHHHHhhcC--CCCCC
Q psy8670 167 GVGAVWISPIFKSPMADFGYDISDYLR-----------------IKILLDFVPNHTSNQHEWFKKSLAN--IPPYS 223 (224)
Q Consensus 167 G~~~~w~~p~f~~~~~dlny~n~d~~~-----------------i~ii~d~v~nh~~~~~~W~~~~~~~--~~~~~ 223 (224)
|++++|.+|+|.++ .|+||++.||++ ++||+|+|+||+|.+|+||++++++ .++|+
T Consensus 30 ~v~~i~LlPffps~-sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~ 104 (470)
T TIGR03852 30 AVGGVHLLPFFPST-GDRGFAPMDYTEVDPAFGDWSDVEALSEKYYLMFDFMINHISRQSEYYQDFLEKKDNSKYK 104 (470)
T ss_pred hCCEEEECCCCcCC-CCCCcCchhhceeCcccCCHHHHHHHHHhhhHHhhhcccccccchHHHHHHHhcCCCCCcc
Confidence 68999999999998 499999999985 6999999999999999999999987 56775
No 45
>KOG3625|consensus
Probab=98.87 E-value=2.8e-09 Score=101.94 Aligned_cols=89 Identities=24% Similarity=0.432 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCC------CHHHHHHHHHHHHHc-CCEEEEe
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFG------DLKDFETLKERLHAL-GIKILLD 131 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G------~~~~~~~lv~~~h~~-gi~vilD 131 (224)
.|.|..++.+| .-+++.|+|.|+++|+++-+.+.+.|+..|..++++.+. +.+|+++||+.+|+. ||-.|.|
T Consensus 138 LGpl~eWeprL-~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 138 LGPLDEWEPRL-RVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred cCChhhhhHHH-HHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 48999999999 999999999999999999988889999999999999986 789999999999965 9999999
Q ss_pred cCCCCCCccchhHHhhh
Q psy8670 132 FVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 132 ~v~nh~~~~~~w~~~~~ 148 (224)
+|+||++.+++|+.+.-
T Consensus 217 vV~NHtAnns~WlleHP 233 (1521)
T KOG3625|consen 217 VVYNHTANNSKWLLEHP 233 (1521)
T ss_pred hhhhccccCCchhHhCc
Confidence 99999999999998653
No 46
>PRK13840 sucrose phosphorylase; Provisional
Probab=98.76 E-value=2.3e-09 Score=98.86 Aligned_cols=59 Identities=34% Similarity=0.487 Sum_probs=51.0
Q ss_pred ccCCCcceeecccc-cCCCCCCCCcchhhHH-----------------HHHHHhhcccCCCCCcHHHHHhhcC--CCCCC
Q psy8670 164 HDLGVGAVWISPIF-KSPMADFGYDISDYLR-----------------IKILLDFVPNHTSNQHEWFKKSLAN--IPPYS 223 (224)
Q Consensus 164 ~~lG~~~~w~~p~f-~~~~~dlny~n~d~~~-----------------i~ii~d~v~nh~~~~~~W~~~~~~~--~~~~~ 223 (224)
+.+ ++++|.+|+| .++..|.||++.||++ |+||+|+|+||+|.+|+||++++++ .++|+
T Consensus 31 ~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~ 109 (495)
T PRK13840 31 DGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGKTHDIMADLIVNHMSAESPQFQDVLAKGEASEYW 109 (495)
T ss_pred HHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHhCCeEEEEECCCcCCCCcHHHHHHHHhCCCCCcc
Confidence 566 8899999999 4567899999999986 5899999999999999999999755 55664
No 47
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=98.57 E-value=1.6e-08 Score=95.14 Aligned_cols=63 Identities=48% Similarity=0.985 Sum_probs=54.8
Q ss_pred hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670 161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN 218 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~ 218 (224)
++.+++|++.+|++|++.++..+++|+..||++ |+||+|+|+||++..|+||+++.+.
T Consensus 40 dyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~ 119 (551)
T PRK10933 40 DYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNK 119 (551)
T ss_pred HHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCC
Confidence 445789999999999998887789999999864 5899999999999999999998766
Q ss_pred CCCCC
Q psy8670 219 IPPYS 223 (224)
Q Consensus 219 ~~~~~ 223 (224)
..+|+
T Consensus 120 ~~~y~ 124 (551)
T PRK10933 120 ESPYR 124 (551)
T ss_pred CCCCc
Confidence 66663
No 48
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=98.55 E-value=2e-08 Score=94.32 Aligned_cols=63 Identities=56% Similarity=1.013 Sum_probs=55.2
Q ss_pred hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670 161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN 218 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~ 218 (224)
++.+.+|++.+|.+|++.++..+.+|+..||++ |+||+|+|+||++.+|+||++++++
T Consensus 34 ~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~ 113 (543)
T TIGR02403 34 DYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAG 113 (543)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcC
Confidence 445789999999999999987788999999874 5899999999999999999999877
Q ss_pred CCCCC
Q psy8670 219 IPPYS 223 (224)
Q Consensus 219 ~~~~~ 223 (224)
..+|+
T Consensus 114 ~~~y~ 118 (543)
T TIGR02403 114 DSPYR 118 (543)
T ss_pred CCccc
Confidence 66664
No 49
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=98.48 E-value=4.7e-08 Score=91.81 Aligned_cols=58 Identities=48% Similarity=0.966 Sum_probs=51.9
Q ss_pred hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670 161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN 218 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~ 218 (224)
++.+.+|++.+|.+|+|.++..+++|+..||++ |+||+|+|+||++..|+||++++++
T Consensus 35 dyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~ 114 (539)
T TIGR02456 35 DYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSN 114 (539)
T ss_pred HHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhC
Confidence 445789999999999999887789999999875 5899999999999999999998865
No 50
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=98.45 E-value=5.9e-08 Score=89.37 Aligned_cols=60 Identities=57% Similarity=1.094 Sum_probs=54.6
Q ss_pred hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670 161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN 218 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~ 218 (224)
++.+.+|++.+|.+|++.+.+.+++|++.|+.+ |++|+|+|+||++.+|+|+++....
T Consensus 36 dYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~ 115 (505)
T COG0366 36 DYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSS 115 (505)
T ss_pred hHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcC
Confidence 334789999999999999988999999999986 4799999999999999999999988
Q ss_pred CC
Q psy8670 219 IP 220 (224)
Q Consensus 219 ~~ 220 (224)
.+
T Consensus 116 ~~ 117 (505)
T COG0366 116 KP 117 (505)
T ss_pred CC
Confidence 75
No 51
>PRK10785 maltodextrin glucosidase; Provisional
Probab=98.39 E-value=9.4e-08 Score=90.80 Aligned_cols=58 Identities=40% Similarity=0.772 Sum_probs=50.5
Q ss_pred chhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA 217 (224)
Q Consensus 160 w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~ 217 (224)
+++++++|++.+|++|+|.++ ..++|+..||++ ||||+|+|+||++..|+||++...
T Consensus 185 LdYL~~LGv~~I~L~Pif~s~-s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~ 263 (598)
T PRK10785 185 LPYLKKLGVTALYLNPIFTAP-SVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNR 263 (598)
T ss_pred HHHHHHcCCCEEEeCCcccCC-CCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhc
Confidence 345678999999999999987 579999999975 589999999999999999998764
Q ss_pred C
Q psy8670 218 N 218 (224)
Q Consensus 218 ~ 218 (224)
+
T Consensus 264 ~ 264 (598)
T PRK10785 264 G 264 (598)
T ss_pred c
Confidence 3
No 52
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=98.37 E-value=9.4e-08 Score=89.81 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCEEEEecCCCCCC--ccchhHHhhhcCCCCccccccchhcccCCCcceeecccccC---------CC
Q psy8670 113 DFETLKERLHALGIKILLDFVPNHTS--NQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKS---------PM 181 (224)
Q Consensus 113 ~~~~lv~~~h~~gi~vilD~v~nh~~--~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~---------~~ 181 (224)
+-+.++++| .|-+.+-+--.- .+.+.+ .++ .+==.|++.+.+|++++|.+|++.+ ++
T Consensus 43 ~p~~~~~~a-----~~W~~~~P~s~i~~~~~s~~-~~L------~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~ 110 (688)
T TIGR02455 43 QPRDASAIA-----SVWFTAYPAAIIAPEGCSVL-EAL------ADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPS 110 (688)
T ss_pred ChHHHHhhc-----CeeEEecchhhcCCCCCcHH-HHh------cChHHHHHHHHhCCCEEEeCcceecccccccCCCCC
Confidence 345677777 676666553322 222222 222 1222466668899999999999999 88
Q ss_pred CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcCCCCCC
Q psy8670 182 ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLANIPPYS 223 (224)
Q Consensus 182 ~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~~~~~~ 223 (224)
.|.||+..|+ + ++||+|+|+||||..|+ |+.+..+..+|+
T Consensus 111 ~D~gyDi~d~-~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~ 172 (688)
T TIGR02455 111 IDGNFDRISF-DIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FRLAELAHGDYP 172 (688)
T ss_pred CCCCCCcccC-ccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hHHHhhcCCCCC
Confidence 9999999985 3 58999999999999999 999998877775
No 53
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.30 E-value=2e-06 Score=80.95 Aligned_cols=97 Identities=20% Similarity=0.440 Sum_probs=59.2
Q ss_pred CCceEEEEec--ccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC--------CCCCCccCCCCc----
Q psy8670 39 QTSVFYHLYP--RSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA--------DFGYDISDYLSF---- 104 (224)
Q Consensus 39 ~~~viY~i~~--~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~--------~~gY~~~d~~~v---- 104 (224)
...+|||=|- ..|... ...-+-.-|.+.. +-+|++|||..++.|-+.++.. .-||+-+|-+++
T Consensus 563 DSqvIYEgFSNFQ~~~t~--~~eytN~~IA~Na-~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ 639 (809)
T PF02324_consen 563 DSQVIYEGFSNFQDFPTT--PSEYTNVVIAKNA-DLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSK 639 (809)
T ss_dssp HT-EEEE---TTB---SS--GGGSHHHHHHHTH-HHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS
T ss_pred hcchhhccccccccCCCC--hHHHHHHHHHHhH-HHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCC
Confidence 4567898442 122111 1112335566667 9999999999999999887532 258999998876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 105 EPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 105 ~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
..+||+.+||+.-++++|+.||+||.|+|++.+-
T Consensus 640 ptKYGs~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 640 PTKYGSVEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp -BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred CCCCCCHHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 4679999999999999999999999999999754
No 54
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=98.20 E-value=1e-07 Score=81.69 Aligned_cols=57 Identities=60% Similarity=1.092 Sum_probs=49.4
Q ss_pred hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670 161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA 217 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~ 217 (224)
++++.+|++.+|++|++.++...++|+..||++ |+||+|+|+||++..|+|+++..+
T Consensus 11 dyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~ 89 (316)
T PF00128_consen 11 DYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLN 89 (316)
T ss_dssp HHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHT
T ss_pred HHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeecccccccccccccccc
Confidence 345789999999999999876789999998864 589999999999999999988776
No 55
>KOG0471|consensus
Probab=98.15 E-value=3.5e-07 Score=85.93 Aligned_cols=62 Identities=47% Similarity=0.821 Sum_probs=55.3
Q ss_pred hcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcCC
Q psy8670 162 RLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLANI 219 (224)
Q Consensus 162 ~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~~ 219 (224)
+.+++|....|.+|++++.+++++|+..|+.+ |++|+|+|+||++.+|+||.++....
T Consensus 48 yi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~ 127 (545)
T KOG0471|consen 48 YIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSK 127 (545)
T ss_pred HHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCCccccccccCcccc
Confidence 34678999999999999999999999999986 58999999999999999999988877
Q ss_pred CCCC
Q psy8670 220 PPYS 223 (224)
Q Consensus 220 ~~~~ 223 (224)
..|+
T Consensus 128 ~~y~ 131 (545)
T KOG0471|consen 128 TGYE 131 (545)
T ss_pred ccce
Confidence 6653
No 56
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=98.03 E-value=5.4e-05 Score=71.06 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=73.3
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHH---------------cCCCeEEEcCcccCC---------------
Q psy8670 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHD---------------LGVGAVWISPIFKSP--------------- 90 (224)
Q Consensus 41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~---------------lG~~~i~l~Pi~~~~--------------- 90 (224)
..|.|||+..-+. .|+|.|+++.. ..|++ .|+++|+|+||-+.-
T Consensus 179 ~nILQiHv~TAsp-----~GtlaGLT~iy-qria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~ 252 (811)
T PF14872_consen 179 RNILQIHVGTASP-----EGTLAGLTRIY-QRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSI 252 (811)
T ss_pred ceeEEEecCCCCC-----CcchHHHHHHH-HHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeee
Confidence 6699999988654 68998888776 66543 599999999985320
Q ss_pred -----------------------------CCCCCCCcc--CCCCcCCC-CC--CHHHHHHHHHHHHH---cCCEEEEecC
Q psy8670 91 -----------------------------MADFGYDIS--DYLSFEPL-FG--DLKDFETLKERLHA---LGIKILLDFV 133 (224)
Q Consensus 91 -----------------------------~~~~gY~~~--d~~~v~~~-~G--~~~~~~~lv~~~h~---~gi~vilD~v 133 (224)
..+|||++. ..-+.||. ++ .++|+-+||+++|. ..|+||.|+|
T Consensus 253 ~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlV 332 (811)
T PF14872_consen 253 RPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLV 332 (811)
T ss_pred cccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeee
Confidence 124788765 33456666 33 37999999999994 6899999999
Q ss_pred CCCCCccchhH
Q psy8670 134 PNHTSNQHEWF 144 (224)
Q Consensus 134 ~nh~~~~~~w~ 144 (224)
+.|.-+.+.=+
T Consensus 333 yGHADNQ~~~L 343 (811)
T PF14872_consen 333 YGHADNQALDL 343 (811)
T ss_pred cccccchhhHh
Confidence 99987765433
No 57
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=97.99 E-value=1.8e-06 Score=83.97 Aligned_cols=60 Identities=35% Similarity=0.723 Sum_probs=51.1
Q ss_pred hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCCCC---cHHHHH
Q psy8670 161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTSNQ---HEWFKK 214 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~---~~W~~~ 214 (224)
++.+.+|++.+|.+|+|.+ +..+++|+..|+.+ |++|+|+|+||++.. |+||++
T Consensus 23 ~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~~~~~n~wf~d 102 (825)
T TIGR02401 23 PYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMAVHLEQNPWWWD 102 (825)
T ss_pred HHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccccChHHHH
Confidence 4457899999999999986 45779999998874 589999999999976 899999
Q ss_pred hhcCCC
Q psy8670 215 SLANIP 220 (224)
Q Consensus 215 ~~~~~~ 220 (224)
++++++
T Consensus 103 vl~~g~ 108 (825)
T TIGR02401 103 VLKNGP 108 (825)
T ss_pred HHHhCC
Confidence 988754
No 58
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=97.90 E-value=3.5e-06 Score=87.08 Aligned_cols=62 Identities=42% Similarity=0.739 Sum_probs=52.5
Q ss_pred hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCC---CCcHHHHH
Q psy8670 161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTS---NQHEWFKK 214 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~---~~~~W~~~ 214 (224)
++.+.+|++.+|.+|+|.+ +...++|+..||.+ |++|+|+|+||++ ..|+||++
T Consensus 765 ~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~~~~~~n~w~~d 844 (1693)
T PRK14507 765 PYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMGVGGADNPWWLD 844 (1693)
T ss_pred HHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccCCCccCCHHHHH
Confidence 4457899999999999995 56789999999974 5899999999998 58999999
Q ss_pred hhcCCC--CC
Q psy8670 215 SLANIP--PY 222 (224)
Q Consensus 215 ~~~~~~--~~ 222 (224)
+.++++ +|
T Consensus 845 vl~~g~~S~y 854 (1693)
T PRK14507 845 VLENGPASPA 854 (1693)
T ss_pred HHHhCCCCCc
Confidence 987543 55
No 59
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=97.85 E-value=4.5e-06 Score=81.56 Aligned_cols=60 Identities=35% Similarity=0.665 Sum_probs=50.2
Q ss_pred hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCCCC---cHHHHH
Q psy8670 161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTSNQ---HEWFKK 214 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~---~~W~~~ 214 (224)
++.+.+|++.+|.+|++.+ +...++|+..|+.+ |++|+|+|+||++.. |+||++
T Consensus 27 ~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~~~~~n~ww~d 106 (879)
T PRK14511 27 PYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAVGGPDNPWWWD 106 (879)
T ss_pred HHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccCcCccCHHHHH
Confidence 3457899999999999986 45789999998864 589999999999874 589999
Q ss_pred hhcCCC
Q psy8670 215 SLANIP 220 (224)
Q Consensus 215 ~~~~~~ 220 (224)
..++++
T Consensus 107 vl~~g~ 112 (879)
T PRK14511 107 VLEWGR 112 (879)
T ss_pred HHHhCC
Confidence 988654
No 60
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=3.1e-05 Score=73.71 Aligned_cols=60 Identities=35% Similarity=0.737 Sum_probs=50.7
Q ss_pred hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCC---CCcHHHHH
Q psy8670 161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTS---NQHEWFKK 214 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~---~~~~W~~~ 214 (224)
++.+++|+...|.||+|.. +-+.|||++.|.-+ +-+|+|+|+||.+ .+++|+.+
T Consensus 26 ~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~g~~N~ww~D 105 (889)
T COG3280 26 DYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVGGHENPWWWD 105 (889)
T ss_pred HHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcccccChHHHH
Confidence 3347899999999999986 45789999998865 3699999999944 66999999
Q ss_pred hhcCCC
Q psy8670 215 SLANIP 220 (224)
Q Consensus 215 ~~~~~~ 220 (224)
++++++
T Consensus 106 VLe~G~ 111 (889)
T COG3280 106 VLENGR 111 (889)
T ss_pred HHHhCc
Confidence 999865
No 61
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.47 E-value=0.00034 Score=53.94 Aligned_cols=80 Identities=13% Similarity=0.035 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhh
Q psy8670 68 KLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147 (224)
Q Consensus 68 ~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~ 147 (224)
+++++|+++|+++|.+.- .....+-|-|+.....+|.++ .+-|+++|++||++||+|+.=+-++ .+....+
T Consensus 4 ~~~~~lk~~~v~si~i~a---~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~---~d~~~~~-- 74 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFA---KCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS---WDEDAAE-- 74 (132)
T ss_pred HHHHHHHHhCCCEEEEEc---ccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee---cChHHHH--
Confidence 334899999999997633 111113345555556788888 7889999999999999998755444 3334444
Q ss_pred hcCCCCccccccch
Q psy8670 148 LANIPPYKCASLLA 161 (224)
Q Consensus 148 ~~~~~~~~~~f~w~ 161 (224)
.+++|+.-+
T Consensus 75 -----~HPeW~~~~ 83 (132)
T PF14871_consen 75 -----RHPEWFVRD 83 (132)
T ss_pred -----hCCceeeEC
Confidence 788898743
No 62
>smart00642 Aamy Alpha-amylase domain.
Probab=97.33 E-value=4.1e-05 Score=61.30 Aligned_cols=46 Identities=63% Similarity=1.075 Sum_probs=39.5
Q ss_pred hcccCCCcceeecccccCCC---CCCCCcchhhHH----------------------HHHHHhhcccCCCC
Q psy8670 162 RLHDLGVGAVWISPIFKSPM---ADFGYDISDYLR----------------------IKILLDFVPNHTSN 207 (224)
Q Consensus 162 ~~~~lG~~~~w~~p~f~~~~---~dlny~n~d~~~----------------------i~ii~d~v~nh~~~ 207 (224)
+.+++|++.+|.+|++.+.. .+.+|+..||++ |+||+|+|+||++.
T Consensus 27 yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 27 YLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 34789999999999998875 788998888763 58999999999987
No 63
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=97.29 E-value=3.4e-05 Score=71.58 Aligned_cols=52 Identities=37% Similarity=0.720 Sum_probs=42.9
Q ss_pred hcccCCCcceeecccccCC--CCCCCCcchhhH---------H----------------------HHHHHhhcccCCCC-
Q psy8670 162 RLHDLGVGAVWISPIFKSP--MADFGYDISDYL---------R----------------------IKILLDFVPNHTSN- 207 (224)
Q Consensus 162 ~~~~lG~~~~w~~p~f~~~--~~dlny~n~d~~---------~----------------------i~ii~d~v~nh~~~- 207 (224)
+++++|++.+|++|++.+. ...++|+..||+ + |+||+|+|+||++.
T Consensus 30 yl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~ 109 (479)
T PRK09441 30 ELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVLNHKAGA 109 (479)
T ss_pred HHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccCC
Confidence 3478999999999999874 356899999886 1 58999999999985
Q ss_pred -CcHHHH
Q psy8670 208 -QHEWFK 213 (224)
Q Consensus 208 -~~~W~~ 213 (224)
.|+|++
T Consensus 110 ~~~~~~~ 116 (479)
T PRK09441 110 DEKETFR 116 (479)
T ss_pred Ccceeee
Confidence 456886
No 64
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=96.93 E-value=0.0003 Score=71.57 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=49.9
Q ss_pred Cccccc-cchhcccCCCcceeecccccCCCCCCCCcchhhHH---------------------------HHHHHhhcccC
Q psy8670 153 PYKCAS-LLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR---------------------------IKILLDFVPNH 204 (224)
Q Consensus 153 ~~~~~f-~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~---------------------------i~ii~d~v~nh 204 (224)
++.+|= .++..+++|++.+|.+|++..+.+..-|+..|+++ |++|+|+|.||
T Consensus 130 ~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NH 209 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFNH 209 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeecc
Confidence 555552 23567889999999999996554566677666653 46999999999
Q ss_pred CCCCcHHHHHhhc
Q psy8670 205 TSNQHEWFKKSLA 217 (224)
Q Consensus 205 ~~~~~~W~~~~~~ 217 (224)
|+..|+|+++..+
T Consensus 210 Ta~ds~Wl~eHPE 222 (1464)
T TIGR01531 210 TANNSPWLLEHPE 222 (1464)
T ss_pred cccCCHHHHhChH
Confidence 9999999997644
No 65
>PLN00196 alpha-amylase; Provisional
Probab=96.91 E-value=0.00019 Score=65.67 Aligned_cols=48 Identities=25% Similarity=0.538 Sum_probs=38.8
Q ss_pred hcccCCCcceeecccccCCCCCCCCcchhhHH-----------------------HHHHHhhcccCCCCCcH
Q psy8670 162 RLHDLGVGAVWISPIFKSPMADFGYDISDYLR-----------------------IKILLDFVPNHTSNQHE 210 (224)
Q Consensus 162 ~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~-----------------------i~ii~d~v~nh~~~~~~ 210 (224)
+++++|++.+|.+|++.+. ..++|+..|+++ |+||+|+|+||++..+.
T Consensus 52 yL~~LGvtaIWL~P~~~s~-s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~ 122 (428)
T PLN00196 52 DIAAAGITHVWLPPPSHSV-SEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHK 122 (428)
T ss_pred HHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccccc
Confidence 3478999999999999875 567887666542 68999999999997664
No 66
>PRK09505 malS alpha-amylase; Reviewed
Probab=96.84 E-value=0.00024 Score=68.56 Aligned_cols=54 Identities=41% Similarity=0.592 Sum_probs=42.2
Q ss_pred hhcccCCCcceeecccccCC--------------CCCCCCcchhhHH----------------------HHHHHhhcccC
Q psy8670 161 ARLHDLGVGAVWISPIFKSP--------------MADFGYDISDYLR----------------------IKILLDFVPNH 204 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~--------------~~dlny~n~d~~~----------------------i~ii~d~v~nh 204 (224)
++.+++|++.+|.+|++.+. ...++|+..||.+ |+||+|+|+||
T Consensus 237 dyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH 316 (683)
T PRK09505 237 DYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNH 316 (683)
T ss_pred HHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCC
Confidence 44677999999999998751 3568999888764 68999999999
Q ss_pred CCC------CcHHHHH
Q psy8670 205 TSN------QHEWFKK 214 (224)
Q Consensus 205 ~~~------~~~W~~~ 214 (224)
++. .++||++
T Consensus 317 ~~~~~~~d~~~~~f~~ 332 (683)
T PRK09505 317 TGYATLADMQEFQFGA 332 (683)
T ss_pred Ccccccccccccchhh
Confidence 994 3456665
No 67
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.66 E-value=0.00036 Score=67.01 Aligned_cols=52 Identities=25% Similarity=0.674 Sum_probs=42.9
Q ss_pred hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHH
Q psy8670 161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWF 212 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~ 212 (224)
++.+++|++.+|++|++..+. ..++|+..+|+. |+||||+|+||++..+.++
T Consensus 178 ~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~ 252 (633)
T PRK12313 178 PYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDDGL 252 (633)
T ss_pred HHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCcccc
Confidence 667899999999999998764 457898888874 6899999999998765433
No 68
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.56 E-value=0.022 Score=50.14 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCC--CHHHHHHHHHHHHHcCCEEEEec
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFG--DLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G--~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
+-+.+.+-+ +.|+++|+|+|.+-=-..... ..+.+.+..-+......+ +.+-|+.+|++||++||+|..=+
T Consensus 17 ~~~~~~~~l-~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 17 SKEQIDEML-DDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEE
Confidence 345566666 999999999998752211100 111122211111111111 35789999999999999996544
No 69
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.54 E-value=0.00056 Score=65.44 Aligned_cols=54 Identities=24% Similarity=0.620 Sum_probs=43.7
Q ss_pred hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHH
Q psy8670 161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKK 214 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~ 214 (224)
++.+++|++.+|++|++..+. ..++|+..+|+. |+||||+|+||++..+..+..
T Consensus 164 dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 240 (613)
T TIGR01515 164 PYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAE 240 (613)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhc
Confidence 567889999999999998753 347888887763 689999999999987766543
No 70
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.30 E-value=0.029 Score=44.89 Aligned_cols=72 Identities=10% Similarity=0.159 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
+-+.+.+.+ .+++++|+++|.|.= .......+.+.++..-.-..+..+-+..++++|.+.||+|.+-+-.+.
T Consensus 18 ~~~~W~~~~-~~m~~~GidtlIlq~---~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 18 TPAQWREEF-RAMKAIGIDTLILQW---TGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred CHHHHHHHH-HHHHHcCCcEEEEEE---eecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 457788999 999999999998761 111122233444411112236678899999999999999999998773
No 71
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.28 E-value=0.00093 Score=65.14 Aligned_cols=53 Identities=26% Similarity=0.576 Sum_probs=42.9
Q ss_pred hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHH
Q psy8670 161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFK 213 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~ 213 (224)
++.+++|++.+|++|++..+. ..++|+..+|+. |+||||+|+||++..+..+.
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~ 348 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLA 348 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchh
Confidence 567889999999999988653 357899888874 58999999999987655443
No 72
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.27 E-value=0.00079 Score=63.51 Aligned_cols=53 Identities=30% Similarity=0.503 Sum_probs=41.7
Q ss_pred chhcccCCCcceeecccccCC-CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHH
Q psy8670 160 LARLHDLGVGAVWISPIFKSP-MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWF 212 (224)
Q Consensus 160 w~~~~~lG~~~~w~~p~f~~~-~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~ 212 (224)
+++++++|++.+|++|++..+ ....+|+..+|+. |+||||+|+||++.++.++
T Consensus 117 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~ 192 (542)
T TIGR02402 117 LPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYL 192 (542)
T ss_pred hHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCccccc
Confidence 356688999999999998754 2457888777653 6899999999998776554
No 73
>PLN02361 alpha-amylase
Probab=95.94 E-value=0.0016 Score=59.12 Aligned_cols=43 Identities=28% Similarity=0.458 Sum_probs=36.7
Q ss_pred cccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCC
Q psy8670 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTS 206 (224)
Q Consensus 163 ~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~ 206 (224)
++++|++.+|++|++.+. ..++|...|+++ |++|+|+|+||++
T Consensus 38 l~~lG~t~iwl~P~~~~~-~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~ 102 (401)
T PLN02361 38 LAKSGFTSAWLPPPSQSL-APEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRV 102 (401)
T ss_pred HHHcCCCEEEeCCCCcCC-CCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccccc
Confidence 478999999999999875 458999888764 5899999999974
No 74
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=95.91 E-value=0.0018 Score=62.78 Aligned_cols=51 Identities=33% Similarity=0.537 Sum_probs=38.6
Q ss_pred chhcccCCCcceeecccccCCCC----------CCCCcchhhHH-------------------------HHHHHhhcccC
Q psy8670 160 LARLHDLGVGAVWISPIFKSPMA----------DFGYDISDYLR-------------------------IKILLDFVPNH 204 (224)
Q Consensus 160 w~~~~~lG~~~~w~~p~f~~~~~----------dlny~n~d~~~-------------------------i~ii~d~v~nh 204 (224)
+++++++|++.+|++|++..... .++|+..+|+. |+||||+|+||
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NH 269 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNH 269 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCC
Confidence 46778999999999999875321 25677655542 58999999999
Q ss_pred CCCCcH
Q psy8670 205 TSNQHE 210 (224)
Q Consensus 205 ~~~~~~ 210 (224)
++..+.
T Consensus 270 t~~~~~ 275 (688)
T TIGR02100 270 TAEGNE 275 (688)
T ss_pred ccCcCC
Confidence 987653
No 75
>PRK03705 glycogen debranching enzyme; Provisional
Probab=95.62 E-value=0.003 Score=60.94 Aligned_cols=48 Identities=29% Similarity=0.489 Sum_probs=35.8
Q ss_pred chhcccCCCcceeecccccCCC----------CCCCCcchhh------------------HH---------HHHHHhhcc
Q psy8670 160 LARLHDLGVGAVWISPIFKSPM----------ADFGYDISDY------------------LR---------IKILLDFVP 202 (224)
Q Consensus 160 w~~~~~lG~~~~w~~p~f~~~~----------~dlny~n~d~------------------~~---------i~ii~d~v~ 202 (224)
+++++++|++.+|++|++.... ...||+..+| .+ |+||||+|+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~ 264 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVF 264 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 5677899999999999987531 1245554444 22 689999999
Q ss_pred cCCCC
Q psy8670 203 NHTSN 207 (224)
Q Consensus 203 nh~~~ 207 (224)
||++.
T Consensus 265 NHt~~ 269 (658)
T PRK03705 265 NHSAE 269 (658)
T ss_pred cCccC
Confidence 99986
No 76
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=0.19 Score=45.79 Aligned_cols=71 Identities=8% Similarity=-0.011 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCC--CCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDY--LSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~--~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
..+=..+.+.+ +.|++||||+|+..=.-.... ..+...+..= .-+-..-++-+-+..+|++||++||+|+-
T Consensus 60 ~~~~~el~~~l-d~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~a 133 (418)
T COG1649 60 LFQRQELKDIL-DDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHA 133 (418)
T ss_pred cccHHHHHHHH-HHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeee
Confidence 44556677778 999999999998763222110 0011111110 00111123456799999999999999954
No 77
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=95.52 E-value=0.025 Score=47.78 Aligned_cols=61 Identities=21% Similarity=0.404 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
..+.+ +.++++|+++|-|.-..+... ...++ .+++ ...+.|+++|++|+++||+||+|+--
T Consensus 23 ~~~~~-~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 23 TEADF-DQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp HHHHH-HHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHH-HHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 45556 999999999999976542211 11111 1111 23588999999999999999999944
No 78
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.15 E-value=0.0038 Score=59.72 Aligned_cols=55 Identities=36% Similarity=0.618 Sum_probs=38.8
Q ss_pred chhcccCCCcceeecccccCCC---------CCCCCcchhhH---------------------H---------HHHHHhh
Q psy8670 160 LARLHDLGVGAVWISPIFKSPM---------ADFGYDISDYL---------------------R---------IKILLDF 200 (224)
Q Consensus 160 w~~~~~lG~~~~w~~p~f~~~~---------~dlny~n~d~~---------------------~---------i~ii~d~ 200 (224)
+++++++|++.+|++|++.... -.++|+..+|+ + |+||||+
T Consensus 170 LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDv 249 (605)
T TIGR02104 170 LDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDV 249 (605)
T ss_pred HHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4667899999999999987532 12566654442 1 5899999
Q ss_pred cccCCCC-CcHHHHH
Q psy8670 201 VPNHTSN-QHEWFKK 214 (224)
Q Consensus 201 v~nh~~~-~~~W~~~ 214 (224)
|+||++. .+.+|+.
T Consensus 250 V~NH~~~~~~~~f~~ 264 (605)
T TIGR02104 250 VYNHTYSREESPFEK 264 (605)
T ss_pred EcCCccCCCCCcccC
Confidence 9999963 4445543
No 79
>PLN02960 alpha-amylase
Probab=95.03 E-value=0.0066 Score=59.73 Aligned_cols=51 Identities=16% Similarity=0.410 Sum_probs=41.3
Q ss_pred chhcccCCCcceeecccccCC-CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcH
Q psy8670 160 LARLHDLGVGAVWISPIFKSP-MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHE 210 (224)
Q Consensus 160 w~~~~~lG~~~~w~~p~f~~~-~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~ 210 (224)
+++.+++|++.+|++|++..+ ....||+..+|+. |+||||+|+||++..+.
T Consensus 423 LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~ 496 (897)
T PLN02960 423 LPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEM 496 (897)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccc
Confidence 567789999999999998753 2447888777763 58999999999998754
No 80
>PRK14705 glycogen branching enzyme; Provisional
Probab=94.84 E-value=0.0087 Score=61.14 Aligned_cols=57 Identities=28% Similarity=0.619 Sum_probs=42.6
Q ss_pred hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670 161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA 217 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~ 217 (224)
++.+++|++.+|++|++..+. ...||+..+|+. |+||||+|+||++... |.....+
T Consensus 773 dYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~-~~l~~fd 851 (1224)
T PRK14705 773 DYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS-WALAQFD 851 (1224)
T ss_pred HHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcch-hhhhhcC
Confidence 566889999999999987653 336788777763 6899999999997663 5444444
Q ss_pred C
Q psy8670 218 N 218 (224)
Q Consensus 218 ~ 218 (224)
+
T Consensus 852 g 852 (1224)
T PRK14705 852 G 852 (1224)
T ss_pred C
Confidence 4
No 81
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=94.57 E-value=0.28 Score=42.84 Aligned_cols=112 Identities=20% Similarity=0.332 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHHcC--CCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 61 DLKGMIEKLPEHLHDLG--VGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
+-+.+.+.+ +.+++.| ++.++|=.=+.. +|.-.+| ..|+ +|.+ .++|++++|++|+++++-+.+ ++
T Consensus 22 ~~~~v~~~~-~~~~~~~iP~d~~~lD~~w~~-----~~~~~~f-~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i 90 (308)
T cd06593 22 DEEEVNEFA-DGMRERNLPCDVIHLDCFWMK-----EFQWCDF-EFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YI 90 (308)
T ss_pred CHHHHHHHH-HHHHHcCCCeeEEEEeccccc-----CCcceee-EECcccCCC---HHHHHHHHHHCCCeEEEEecC-CC
Confidence 445666666 8889999 677777654432 2222243 6664 5764 579999999999999999887 67
Q ss_pred CccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670 138 SNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 138 ~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~ 193 (224)
+.+++.|++..+ .+||+-+.. | ..+....+.....-++|.||+.++
T Consensus 91 ~~~~~~~~e~~~-----~g~~v~~~~---g--~~~~~~~w~g~~~~~Dftnp~a~~ 136 (308)
T cd06593 91 AQKSPLFKEAAE-----KGYLVKKPD---G--SVWQWDLWQPGMGIIDFTNPDACK 136 (308)
T ss_pred CCCchhHHHHHH-----CCeEEECCC---C--CeeeecccCCCcccccCCCHHHHH
Confidence 777777764432 345552211 1 111111111222346788888775
No 82
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=94.49 E-value=0.092 Score=49.16 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=47.4
Q ss_pred CCCCCCHH-HHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHH
Q psy8670 56 GDGVGDLK-GMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLK 112 (224)
Q Consensus 56 ~~~~g~l~-~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~ 112 (224)
+-|+|+|- ++.+-+ +.+++.|++.+.++|+.+.....+.|++.+=+.+||-|=+.+
T Consensus 19 ~~GiGDfg~dl~~~i-d~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~alnplyI~l~ 75 (497)
T PRK14508 19 SYGIGDFGKGAYEFI-DFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGNPLLIDLE 75 (497)
T ss_pred CCCCcchHHHHHHHH-HHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcChh
Confidence 34689995 877777 999999999999999999877778999999899998875543
No 83
>PLN02784 alpha-amylase
Probab=94.46 E-value=0.0092 Score=58.61 Aligned_cols=44 Identities=39% Similarity=0.549 Sum_probs=37.2
Q ss_pred cccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCC
Q psy8670 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSN 207 (224)
Q Consensus 163 ~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~ 207 (224)
.+.+|++.+|+.|++.+. ..+||...|+++ |++|+|+|+||++.
T Consensus 530 L~~LG~taIWLpP~~~s~-s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag 595 (894)
T PLN02784 530 LSSLGFTVVWLPPPTESV-SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCA 595 (894)
T ss_pred HHHhCCCEEEeCCCCCCC-CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccc
Confidence 466899999999998775 568999888764 58999999999875
No 84
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=94.06 E-value=0.012 Score=57.37 Aligned_cols=50 Identities=30% Similarity=0.659 Sum_probs=40.5
Q ss_pred chhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCc
Q psy8670 160 LARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQH 209 (224)
Q Consensus 160 w~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~ 209 (224)
+++.+++|++.+|++|++..+. ..+||+..+|+. |+||||+|+||++..+
T Consensus 257 L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~ 329 (758)
T PLN02447 257 LPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNT 329 (758)
T ss_pred HHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccccc
Confidence 4667889999999999998653 457888877764 5899999999998754
No 85
>PLN02635 disproportionating enzyme
Probab=93.90 E-value=0.11 Score=48.92 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=53.7
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC----CCCCCCccCCCCcCCCCCCHHHHH
Q psy8670 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM----ADFGYDISDYLSFEPLFGDLKDFE 115 (224)
Q Consensus 41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~----~~~gY~~~d~~~v~~~~G~~~~~~ 115 (224)
+++.+++ +.. .+-++|+|-....++++.+++.|.+.++++|+.+... .++.|++.+=+..||-|=+.+.+.
T Consensus 31 Gvll~l~--SLp--s~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~NPlyI~le~L~ 105 (538)
T PLN02635 31 GILLHPT--SLP--GPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGNTLLISLEELV 105 (538)
T ss_pred EEEEccc--cCC--CCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccChhhcCHHhhh
Confidence 4444443 333 2356899988776666999999999999999998743 578899999889998887665543
No 86
>PRK12568 glycogen branching enzyme; Provisional
Probab=93.77 E-value=0.016 Score=56.42 Aligned_cols=48 Identities=25% Similarity=0.535 Sum_probs=37.3
Q ss_pred hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCC
Q psy8670 161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQ 208 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~ 208 (224)
++.+++|++.+|++|++..+. ...+|+..+++. |+||||+|+||++..
T Consensus 277 ~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d 347 (730)
T PRK12568 277 PYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDD 347 (730)
T ss_pred HHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcc
Confidence 556789999999999987653 236676665542 689999999999875
No 87
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=93.69 E-value=0.55 Score=41.02 Aligned_cols=110 Identities=18% Similarity=0.321 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHHcC--CCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 61 DLKGMIEKLPEHLHDLG--VGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
+-+.+.+.+ +.+++.| ++.|+|=--+... -.+| ..|+ +|-+ .++|++++|++|+|+++=+-+ ++
T Consensus 28 s~~~v~~~~-~~~~~~~iP~d~i~iD~~w~~~-------~g~f-~~d~~~FPd---p~~mi~~l~~~G~k~~l~i~P-~i 94 (303)
T cd06592 28 NQETVLNYA-QEIIDNGFPNGQIEIDDNWETC-------YGDF-DFDPTKFPD---PKGMIDQLHDLGFRVTLWVHP-FI 94 (303)
T ss_pred CHHHHHHHH-HHHHHcCCCCCeEEeCCCcccc-------CCcc-ccChhhCCC---HHHHHHHHHHCCCeEEEEECC-ee
Confidence 456677777 8888888 4566664323211 1233 5554 5664 789999999999999998887 56
Q ss_pred CccchhHHhhhcCCCCccccccchhcc-cCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670 138 SNQHEWFKKSLANIPPYKCASLLARLH-DLGVGAVWISPIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 138 ~~~~~w~~~~~~~~~~~~~~f~w~~~~-~lG~~~~w~~p~f~~~~~dlny~n~d~~~ 193 (224)
+.+++.|++.. ..++|+-+... ....+..| .....-+++.||+.++
T Consensus 95 ~~~s~~~~e~~-----~~g~~vk~~~g~~~~~~~~w-----~g~~~~~Dftnp~a~~ 141 (303)
T cd06592 95 NTDSENFREAV-----EKGYLVSEPSGDIPALTRWW-----NGTAAVLDFTNPEAVD 141 (303)
T ss_pred CCCCHHHHhhh-----hCCeEEECCCCCCCccccee-----cCCcceEeCCCHHHHH
Confidence 77777776433 23555522110 01111111 1122346788888776
No 88
>PRK14706 glycogen branching enzyme; Provisional
Probab=93.60 E-value=0.017 Score=55.60 Aligned_cols=53 Identities=23% Similarity=0.532 Sum_probs=41.5
Q ss_pred hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHH
Q psy8670 161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFK 213 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~ 213 (224)
++.+++|++.++++|+...+. ...||+..+|+. |+||||+|+||++..+.++.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~ 250 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLA 250 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhh
Confidence 456889999999999987642 246787777653 58999999999998776653
No 89
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.44 E-value=0.27 Score=43.70 Aligned_cols=52 Identities=37% Similarity=0.550 Sum_probs=36.0
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
+.||+.|+|.|-|=- +..+.. .-+-+.+...++.++|+++||+|+||+=+.+
T Consensus 31 ~ilk~~G~N~vRlRv-wv~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD 82 (332)
T PF07745_consen 31 QILKDHGVNAVRLRV-WVNPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSD 82 (332)
T ss_dssp HHHHHTT--EEEEEE--SS-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSS
T ss_pred HHHHhcCCCeEEEEe-ccCCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeecccC
Confidence 888999999998743 222211 3456789999999999999999999994443
No 90
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=93.38 E-value=0.13 Score=48.09 Aligned_cols=61 Identities=18% Similarity=0.332 Sum_probs=35.6
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHcCCCeEEEcCcccCCCC-CCCCCccCCCCcCCCCCCHHHHHH
Q psy8670 55 NGDGVGDL-KGMIEKLPEHLHDLGVGAVWISPIFKSPMA-DFGYDISDYLSFEPLFGDLKDFET 116 (224)
Q Consensus 55 ~~~~~g~l-~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~-~~gY~~~d~~~v~~~~G~~~~~~~ 116 (224)
.+-|+|+| .++..-+ +.+++.|++.+.|.|+++.... ++.|++.+=+.+||-|=+.+.+.+
T Consensus 10 ~~~GIGDfg~dl~~~~-d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~e 72 (496)
T PF02446_consen 10 RSWGIGDFGDDLYQFI-DWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALPE 72 (496)
T ss_dssp S--SS--SSHHHHHHH-HHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHHH
T ss_pred CCCceecHHHHHHHHH-HHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhhh
Confidence 33478999 7777777 9999999999999999987543 348999999999999977655443
No 91
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=93.23 E-value=0.68 Score=42.12 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
+-+.+.+.+ +.++++|++.+.|===+.....+.--..-|+ .+|+ +|. +.++.|++.+|++||+.-+=+-+--++.
T Consensus 56 ~e~~i~~~a-~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 56 TEEKILELA-DAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp -HHHHHHHH-HHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred CHHHHHHHH-HHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccc
Confidence 345566666 9999999998755322211111111122344 4554 564 4699999999999999988887877888
Q ss_pred cchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670 140 QHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR 193 (224)
Q Consensus 140 ~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~ 193 (224)
++..++ .++||.+-...... ..+..+--+++++|++++
T Consensus 132 ~S~l~~-------~hPdw~l~~~~~~~---------~~~r~~~vLD~~~pev~~ 169 (394)
T PF02065_consen 132 DSDLYR-------EHPDWVLRDPGRPP---------TLGRNQYVLDLSNPEVRD 169 (394)
T ss_dssp SSCHCC-------SSBGGBTCCTTSE----------ECBTTBEEB-TTSHHHHH
T ss_pred hhHHHH-------hCccceeecCCCCC---------cCcccceEEcCCCHHHHH
Confidence 888887 88999863221110 011112237889999876
No 92
>PRK09936 hypothetical protein; Provisional
Probab=93.12 E-value=1.2 Score=38.71 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=53.5
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCC-HHHHHHHH
Q psy8670 40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGD-LKDFETLK 118 (224)
Q Consensus 40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~-~~~~~~lv 118 (224)
++++||-.-+.- .-+-..+.+.+ ..++.+|+++|.+ +-. +|. |+.||+ ..-+.+.+
T Consensus 22 ~g~F~Qp~n~d~-------~~~~~qWq~~~-~~~~~~G~~tLiv----QWt----~yG-------~~~fg~~~g~La~~l 78 (296)
T PRK09936 22 KGIFYQPQNRDS-------QVTDTQWQGLW-SQLRLQGFDTLVV----QWT----RYG-------DADFGGQRGWLAKRL 78 (296)
T ss_pred ccceeccccccC-------CCCHHHHHHHH-HHHHHcCCcEEEE----Eee----ecc-------CCCcccchHHHHHHH
Confidence 466777543321 23456677778 8899999999954 322 121 114455 45699999
Q ss_pred HHHHHcCCEEEEecCCCCCCccchhHHhh
Q psy8670 119 ERLHALGIKILLDFVPNHTSNQHEWFKKS 147 (224)
Q Consensus 119 ~~~h~~gi~vilD~v~nh~~~~~~w~~~~ 147 (224)
++|++.||+|++=+..+ ..||+..
T Consensus 79 ~~A~~~Gl~v~vGL~~D-----p~y~q~~ 102 (296)
T PRK09936 79 AAAQQAGLKLVVGLYAD-----PEFFMHQ 102 (296)
T ss_pred HHHHHcCCEEEEcccCC-----hHHHHHH
Confidence 99999999999988764 4555544
No 93
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=93.09 E-value=0.2 Score=51.86 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=50.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCC----CCCCccCCCCcCCCCCCHHHHH
Q psy8670 55 NGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD----FGYDISDYLSFEPLFGDLKDFE 115 (224)
Q Consensus 55 ~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~----~gY~~~d~~~v~~~~G~~~~~~ 115 (224)
.+-++|+|.++.+-+ +.+++.|.+.+.|+|+.+....+ +.|++.+=+.+||-|=+.+.+.
T Consensus 738 ~~~GiGDf~dl~~~v-d~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l~ 801 (1221)
T PRK14510 738 RPWGIGDFEELYALV-DFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLLP 801 (1221)
T ss_pred CCCCccCHHHHHHHH-HHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhcc
Confidence 456789998877777 99999999999999999875545 8899999999999987765543
No 94
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=93.00 E-value=0.021 Score=57.92 Aligned_cols=19 Identities=37% Similarity=0.663 Sum_probs=16.4
Q ss_pred chhcccCCCcceeeccccc
Q psy8670 160 LARLHDLGVGAVWISPIFK 178 (224)
Q Consensus 160 w~~~~~lG~~~~w~~p~f~ 178 (224)
+++++++|++.+|++|+|.
T Consensus 486 LdYLkeLGVT~I~LmPv~d 504 (1111)
T TIGR02102 486 LDYLQDLGVTHIQLLPVLS 504 (1111)
T ss_pred HHHHHHcCCCEEEEcCccc
Confidence 4667899999999999985
No 95
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.99 E-value=0.38 Score=42.02 Aligned_cols=61 Identities=31% Similarity=0.483 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCCeEEEcCcccCCC--CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 64 GMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 64 ~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
|..+.++.-||+.||+.|.|== +..+. ...||.-. .++.+..-++.++|+++||||++|+-
T Consensus 63 g~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggG--------nnD~~k~ieiakRAk~~GmKVl~dFH 125 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGG--------NNDLKKAIEIAKRAKNLGMKVLLDFH 125 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCC--------cchHHHHHHHHHHHHhcCcEEEeecc
Confidence 3444444889999999987742 22111 11222211 12345666778889999999999993
No 96
>PLN02950 4-alpha-glucanotransferase
Probab=92.53 E-value=0.39 Score=48.15 Aligned_cols=60 Identities=15% Similarity=0.323 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-----CCCCCCccCCCCcCCCCCCHHHHHHH
Q psy8670 57 DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-----ADFGYDISDYLSFEPLFGDLKDFETL 117 (224)
Q Consensus 57 ~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-----~~~gY~~~d~~~v~~~~G~~~~~~~l 117 (224)
-|+|+|.++.+-+ +.+++.|.+.++|+|+.+... .+..|++.+=+++||.|=+.+++.+.
T Consensus 277 ~GIGDf~dl~~~i-d~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~~~ 341 (909)
T PLN02950 277 VGVGEFLDLKLLV-DWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSER 341 (909)
T ss_pred CCeeCHHHHHHHH-HHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHHhh
Confidence 4689998776666 999999999999999987652 12489999999999999887766433
No 97
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=92.46 E-value=0.17 Score=44.67 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
+-+.+.| ..+|++|+|+|..-=.+..-.... ...|| ....++.++++.|+++||.||+-.=+
T Consensus 24 ~~W~~~l-~k~ka~G~n~v~~yv~W~~he~~~--g~~df-------~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 24 EYWRDRL-QKMKAAGLNTVSTYVPWNLHEPEE--GQFDF-------TGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GGHHHHH-HHHHHTT-SEEEEE--HHHHSSBT--TB----------SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hHHHHHH-HHHHhCCcceEEEeccccccCCCC--Ccccc-------cchhhHHHHHHHHHHcCcEEEecccc
Confidence 4466777 888999999998753332211111 23444 23479999999999999999987644
No 98
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=92.15 E-value=0.34 Score=43.51 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
+++...+.+ ...+++||+.|+.+=..+-. +.. ...+.|++|++.||++||+|++|+-+.
T Consensus 12 ~~~~~~~yi-~~a~~~Gf~~iFTSL~ipe~------~~~---------~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENKAYI-EKAAKYGFKRIFTSLHIPED------DPE---------DYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHHHHH-HHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHHHHH-HHHHHCCCCEEECCCCcCCC------CHH---------HHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 566677777 88889999999876221111 011 125899999999999999999999765
No 99
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=92.01 E-value=0.45 Score=46.36 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=51.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccC----CCCCCCCCccCCCCcCCCCCCHHHHHHHH
Q psy8670 54 SNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS----PMADFGYDISDYLSFEPLFGDLKDFETLK 118 (224)
Q Consensus 54 ~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~----~~~~~gY~~~d~~~v~~~~G~~~~~~~lv 118 (224)
..+-++|+|.++.+-+ +.+++.|.+.+.|+|+... +..++.|++.+=+.+||-|=+.+.+.++.
T Consensus 156 ~~~~GIGDfgdl~~l~-d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 156 EHNWGIGDFGDLKQML-EDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred CCCCCeecHHHHHHHH-HHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhh
Confidence 3456789999955555 9999999999999999853 33568899999999999998887776654
No 100
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=91.87 E-value=0.47 Score=46.45 Aligned_cols=77 Identities=17% Similarity=0.424 Sum_probs=57.3
Q ss_pred ccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-C---C-CCCCccCCCCcCCCCCC
Q psy8670 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-A---D-FGYDISDYLSFEPLFGD 110 (224)
Q Consensus 36 ~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~---~-~gY~~~d~~~v~~~~G~ 110 (224)
.|-..+++-+++- .....+-|+|+|-++.+-+ +.+++.|.+.+.|+|+.+... . + +.|++.+=+.+||.|=+
T Consensus 58 ~~R~aGill~l~S--LrS~~s~GIGDfgdL~~fv-D~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyId 134 (745)
T PLN03236 58 AWKGSGMALPVFS--LRSAESVGAGDFGDLEALV-DFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLK 134 (745)
T ss_pred chhhheeeecccc--CCCCCCCCcccHHHHHHHH-HHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcC
Confidence 4666677766652 2233445789999955555 999999999999999988642 2 2 58999999999999887
Q ss_pred HHHHH
Q psy8670 111 LKDFE 115 (224)
Q Consensus 111 ~~~~~ 115 (224)
.+.+.
T Consensus 135 le~L~ 139 (745)
T PLN03236 135 LKELV 139 (745)
T ss_pred HHHhh
Confidence 76664
No 101
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=91.32 E-value=1 Score=39.85 Aligned_cols=74 Identities=9% Similarity=0.167 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC------------CCCCCHHHHHHHHHHHHHcCCEE
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE------------PLFGDLKDFETLKERLHALGIKI 128 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~------------~~~G~~~~~~~lv~~~h~~gi~v 128 (224)
+.+.|...+ +.++..++|.+++=-. ...++...+..|-.+- ..+=|.+|+++|++-|+++||+|
T Consensus 16 ~~~~lk~~i-d~ma~~KlN~lhlHLt---D~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~v 91 (329)
T cd06568 16 TVAEVKRYI-DLLALYKLNVLHLHLT---DDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITV 91 (329)
T ss_pred CHHHHHHHH-HHHHHhCCcEEEEEee---cCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 556666667 8889989999887321 1111222222221211 11227899999999999999999
Q ss_pred EEecC-CCCCC
Q psy8670 129 LLDFV-PNHTS 138 (224)
Q Consensus 129 ilD~v-~nh~~ 138 (224)
|-.+- |.|+.
T Consensus 92 IPEiD~PGH~~ 102 (329)
T cd06568 92 VPEIDMPGHTN 102 (329)
T ss_pred EEecCCcHHHH
Confidence 97663 56654
No 102
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=91.15 E-value=0.64 Score=41.14 Aligned_cols=69 Identities=17% Similarity=0.386 Sum_probs=45.8
Q ss_pred eEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHH
Q psy8670 42 VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERL 121 (224)
Q Consensus 42 viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~ 121 (224)
.-+.|||.+ .....-.+-+ +...+.||+.|..+=..+.+.. . +-.+-|++|+++|
T Consensus 4 ~GfSifp~~---------~~~~~~~~Yi-~~~~~~Gf~~IFtsl~~~~~~~-~--------------~~~~~~~ell~~A 58 (360)
T COG3589 4 LGFSIFPNR---------SPKEKDIAYI-DRMHKYGFKRIFTSLLIPEEDA-E--------------LYFHRFKELLKEA 58 (360)
T ss_pred eeEEeccCC---------CcchhHHHHH-HHHHHcCccceeeecccCCchH-H--------------HHHHHHHHHHHHH
Confidence 346677733 2233344555 7778899999876543322211 0 2235799999999
Q ss_pred HHcCCEEEEecCCC
Q psy8670 122 HALGIKILLDFVPN 135 (224)
Q Consensus 122 h~~gi~vilD~v~n 135 (224)
++.||+||+|+-+.
T Consensus 59 nklg~~vivDvnPs 72 (360)
T COG3589 59 NKLGLRVIVDVNPS 72 (360)
T ss_pred HhcCcEEEEEcCHH
Confidence 99999999999765
No 103
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=90.76 E-value=0.64 Score=41.72 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccC--CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCcc
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKS--PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQ 140 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~--~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~ 140 (224)
+.+.+.+ +.++++|+|+|-|..+.=. ... . ...|| +.+.++++.|+++||+|+|-+. +..-
T Consensus 10 e~~~~d~-~~m~~~G~n~vri~~~~W~~lEP~-e--G~ydF----------~~lD~~l~~a~~~Gi~viL~~~---~~~~ 72 (374)
T PF02449_consen 10 EEWEEDL-RLMKEAGFNTVRIGEFSWSWLEPE-E--GQYDF----------SWLDRVLDLAAKHGIKVILGTP---TAAP 72 (374)
T ss_dssp CHHHHHH-HHHHHHT-SEEEE-CCEHHHH-SB-T--TB-------------HHHHHHHHHHHCTT-EEEEEEC---TTTS
T ss_pred HHHHHHH-HHHHHcCCCEEEEEEechhhccCC-C--Ceeec----------HHHHHHHHHHHhccCeEEEEec---cccc
Confidence 4466777 9999999999998775311 111 1 13344 5689999999999999999775 3445
Q ss_pred chhHH
Q psy8670 141 HEWFK 145 (224)
Q Consensus 141 ~~w~~ 145 (224)
..|+.
T Consensus 73 P~Wl~ 77 (374)
T PF02449_consen 73 PAWLY 77 (374)
T ss_dssp -HHHH
T ss_pred ccchh
Confidence 56776
No 104
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=89.48 E-value=1.5 Score=39.12 Aligned_cols=75 Identities=12% Similarity=0.223 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCC-------CCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEP-------LFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-------~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
+.+.+...+ +.++..++|.+++= -....++.+.+..|-.+.. .+=|.+|++++|+-|+++||+||-.+-
T Consensus 16 ~~~~ik~~I-d~ma~~KlN~lh~H---ltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID 91 (348)
T cd06562 16 SVDSIKRTI-DAMAYNKLNVLHWH---ITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEID 91 (348)
T ss_pred CHHHHHHHH-HHHHHhCCcEEEEe---EEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEecc
Confidence 455566666 88888889988862 1111122222222222211 122799999999999999999998773
Q ss_pred -CCCCCc
Q psy8670 134 -PNHTSN 139 (224)
Q Consensus 134 -~nh~~~ 139 (224)
|.|+..
T Consensus 92 ~PGH~~a 98 (348)
T cd06562 92 TPGHTGS 98 (348)
T ss_pred CchhhHH
Confidence 677754
No 105
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.02 E-value=1.9 Score=39.91 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecC-CCCCCc
Q psy8670 110 DLKDFETLKERLHALGIKILLDFV-PNHTSN 139 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v-~nh~~~ 139 (224)
|.+|++++|+-|+++||+||-.+- |.|+..
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHH
Confidence 789999999999999999997663 677654
No 106
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=88.94 E-value=0.18 Score=46.14 Aligned_cols=65 Identities=23% Similarity=0.434 Sum_probs=41.1
Q ss_pred Cccccc-cchhcccCCCcceeecccccCCCCCCCCcchhhHH-----------------------------HHHHHhhcc
Q psy8670 153 PYKCAS-LLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR-----------------------------IKILLDFVP 202 (224)
Q Consensus 153 ~~~~~f-~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~-----------------------------i~ii~d~v~ 202 (224)
++.+|- .+...+..|+..++.+|+..-+.+.-=|+..|.++ +-.|.|+|.
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~ 99 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVVL 99 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEee
Confidence 444542 12344567888888888754433333333333332 347899999
Q ss_pred cCCCCCcHHHHHhhc
Q psy8670 203 NHTSNQHEWFKKSLA 217 (224)
Q Consensus 203 nh~~~~~~W~~~~~~ 217 (224)
|||+...+|+++..+
T Consensus 100 NHtA~nS~Wl~eHPE 114 (423)
T PF14701_consen 100 NHTANNSPWLREHPE 114 (423)
T ss_pred ccCcCCChHHHhCcc
Confidence 999999999987654
No 107
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.50 E-value=2 Score=37.56 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcC--cccCCCCCCCCCccCCCCcC--CCCCCHHHHHHHHHHHHHcCCEEEEecC-C
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISP--IFKSPMADFGYDISDYLSFE--PLFGDLKDFETLKERLHALGIKILLDFV-P 134 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~P--i~~~~~~~~gY~~~d~~~v~--~~~G~~~~~~~lv~~~h~~gi~vilD~v-~ 134 (224)
-+.+.+.+.+ +.++.+|+|.++|== -|+. .++-.+. ...=|.+|++++++-|+++||+||--+- +
T Consensus 14 ~~~~~lk~~i-d~ma~~k~N~l~lhl~D~f~~---------~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~p 83 (301)
T cd06565 14 PKVSYLKKLL-RLLALLGANGLLLYYEDTFPY---------EGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTL 83 (301)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEEEEEecceec---------CCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCH
Confidence 3566677777 999999999998731 1111 1111121 2223789999999999999999986552 4
Q ss_pred CCC
Q psy8670 135 NHT 137 (224)
Q Consensus 135 nh~ 137 (224)
.|+
T Consensus 84 GH~ 86 (301)
T cd06565 84 GHL 86 (301)
T ss_pred HHH
Confidence 554
No 108
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=88.13 E-value=1.6 Score=38.30 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=38.0
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHH
Q psy8670 40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119 (224)
Q Consensus 40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~ 119 (224)
++|-||--+.+-..+..|...+-+.....+ ++||+||+|+|.+=-|-+.. +=.+..+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi-~~l~~LgiNtIRVY~vdp~~----------------------nHd~CM~ 86 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDI-PLLKELGINTIRVYSVDPSK----------------------NHDECMS 86 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHH-HHHHHHT-SEEEES---TTS------------------------HHHHH
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhH-HHHHHcCCCEEEEEEeCCCC----------------------CHHHHHH
Confidence 455555444331122234455555566667 99999999999875554322 1224566
Q ss_pred HHHHcCCEEEEecCCCCCC
Q psy8670 120 RLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 120 ~~h~~gi~vilD~v~nh~~ 138 (224)
++.+.||-||+|+-.-..+
T Consensus 87 ~~~~aGIYvi~Dl~~p~~s 105 (314)
T PF03198_consen 87 AFADAGIYVILDLNTPNGS 105 (314)
T ss_dssp HHHHTT-EEEEES-BTTBS
T ss_pred HHHhCCCEEEEecCCCCcc
Confidence 6777899999999765554
No 109
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=87.26 E-value=1 Score=39.65 Aligned_cols=75 Identities=11% Similarity=0.225 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCC----------CCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPL----------FGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~----------~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+.+.+.+.+ +.++..++|.++|=-- ...++.+....+-.+... +=|.+|+++|++.|+++||+||-
T Consensus 16 ~~~~ik~~i-d~ma~~k~N~lhlhl~---D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIP 91 (351)
T PF00728_consen 16 SVDTIKRLI-DQMAYYKLNVLHLHLS---DDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIP 91 (351)
T ss_dssp -HHHHHHHH-HHHHHTT-SEEEEEEE---SSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHH-HHHHHcCCcEEEEEEe---cCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceee
Confidence 566677766 9999999999987321 001122222222111111 33689999999999999999997
Q ss_pred ecC-CCCCCc
Q psy8670 131 DFV-PNHTSN 139 (224)
Q Consensus 131 D~v-~nh~~~ 139 (224)
.+- |.|++.
T Consensus 92 eid~PGH~~~ 101 (351)
T PF00728_consen 92 EIDTPGHAEA 101 (351)
T ss_dssp EEEESSS-HH
T ss_pred eccCchHHHH
Confidence 763 778764
No 110
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=86.94 E-value=2.1 Score=36.16 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
++.+++++++||++|.++-=+-. + +.++..++|+.++++|++|+-.+=...
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~~--------------i-----~~~~~~rlI~~~~~~g~~v~~EvG~K~ 124 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSME--------------I-----SLEERCNLIERAKDNGFMVLSEVGKKS 124 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCccC--------------C-----CHHHHHHHHHHHHhCCCeEeccccccC
Confidence 33337999999999988642211 1 247899999999999999998765544
No 111
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=86.55 E-value=1.5 Score=39.16 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 69 LPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 69 l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
.++-+|++|+..+.|+--+..+-.-|.=..++|...+.. +..+=+++|+++|+++||++.+
T Consensus 96 W~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~-~krDiv~El~~A~rk~Glk~G~ 156 (346)
T PF01120_consen 96 WAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSG-PKRDIVGELADACRKYGLKFGL 156 (346)
T ss_dssp HHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGG-GTS-HHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCC-CCCCHHHHHHHHHHHcCCeEEE
Confidence 337789999999988865543221122233344444422 2357899999999999999988
No 112
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=86.33 E-value=2.4 Score=37.00 Aligned_cols=75 Identities=11% Similarity=0.211 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC-----------CCCCCHHHHHHHHHHHHHcCCEEE
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE-----------PLFGDLKDFETLKERLHALGIKIL 129 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~-----------~~~G~~~~~~~lv~~~h~~gi~vi 129 (224)
+.+.+.+.+ +.++..++|.+++==- ...++.+....|-.+- ..+=|.+|++++++-|+++||+||
T Consensus 14 ~~~~lk~~i-d~ma~~K~N~lhlHl~---D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 14 SVESIKRTI-DVLARYKINTFHWHLT---DDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred CHHHHHHHH-HHHHHhCCcEEEEeee---cCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence 556666666 8889999999876311 1111222222222211 113368999999999999999999
Q ss_pred EecC-CCCCCc
Q psy8670 130 LDFV-PNHTSN 139 (224)
Q Consensus 130 lD~v-~nh~~~ 139 (224)
-.+- |.|+..
T Consensus 90 PEiD~PGH~~a 100 (303)
T cd02742 90 PEIDMPGHSTA 100 (303)
T ss_pred EeccchHHHHH
Confidence 8773 677653
No 113
>PLN03059 beta-galactosidase; Provisional
Probab=86.00 E-value=1.8 Score=43.01 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 62 LKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 62 l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
-+-+.++| ..+|++|+|+|..==.+..-.... ...| |.+..|+.++++.|++.||.||+=.=
T Consensus 58 p~~W~d~L-~k~Ka~GlNtV~tYV~Wn~HEp~~--G~~d-------F~G~~DL~~Fl~la~e~GLyvilRpG 119 (840)
T PLN03059 58 PEMWPDLI-QKAKDGGLDVIQTYVFWNGHEPSP--GNYY-------FEDRYDLVKFIKVVQAAGLYVHLRIG 119 (840)
T ss_pred HHHHHHHH-HHHHHcCCCeEEEEecccccCCCC--Ceee-------ccchHHHHHHHHHHHHcCCEEEecCC
Confidence 35677788 888999999997633222110101 1223 35678999999999999999998543
No 114
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=85.82 E-value=3 Score=37.79 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=40.7
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+-+|+.|++.+.|+-=+..+-.-|.=..++|..++... ..+=+++|+++|+++||++-+
T Consensus 88 ~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~ 146 (384)
T smart00812 88 DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL 146 (384)
T ss_pred HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE
Confidence 77899999999887654332111111233554555433 468899999999999999987
No 115
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=85.08 E-value=2.7 Score=36.55 Aligned_cols=71 Identities=15% Similarity=0.292 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCC----CCCCCCc--------cCCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPM----ADFGYDI--------SDYLSFEPLFGDLKDFETLKERLHALGIKI 128 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~----~~~gY~~--------~d~~~v~~~~G~~~~~~~lv~~~h~~gi~v 128 (224)
+...+..-| +..++.|||.|.+.=+-+... ...|+.+ .|+..+||.| -+-+.+.|+.|.++||.+
T Consensus 28 ~~~e~~~yL-~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~ 104 (289)
T PF13204_consen 28 TREEWEQYL-DTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA 104 (289)
T ss_dssp -HHHHHHHH-HHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE
Confidence 334555556 999999999999974433211 1123233 4666677665 367889999999999998
Q ss_pred EEecCCCC
Q psy8670 129 LLDFVPNH 136 (224)
Q Consensus 129 ilD~v~nh 136 (224)
. +|+=|
T Consensus 105 ~--lv~~w 110 (289)
T PF13204_consen 105 A--LVPFW 110 (289)
T ss_dssp E--EESS-
T ss_pred E--EEEEE
Confidence 4 55555
No 116
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=84.88 E-value=8.2 Score=33.91 Aligned_cols=78 Identities=13% Similarity=0.298 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHHc--CCCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 61 DLKGMIEKLPEHLHDL--GVGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~l--G~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
+-+.+.+.+ +.+++. -+++|+|=--+-. ..++ .+ ++.|+ +|-+ .++|++++|++|++|++-+.+ ++
T Consensus 22 ~~~ev~~~~-~~~~~~~iP~d~i~lD~~~~~---~~~~--~~-f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~P-~v 90 (319)
T cd06591 22 TQEELLDVA-KEYRKRGIPLDVIVQDWFYWP---KQGW--GE-WKFDPERFPD---PKAMVRELHEMNAELMISIWP-TF 90 (319)
T ss_pred CHHHHHHHH-HHHHHhCCCccEEEEechhhc---CCCc--ee-EEEChhhCCC---HHHHHHHHHHCCCEEEEEecC-Cc
Confidence 445566666 777765 5677766421111 1111 23 35554 4654 568899999999999996654 46
Q ss_pred CccchhHHhhhc
Q psy8670 138 SNQHEWFKKSLA 149 (224)
Q Consensus 138 ~~~~~w~~~~~~ 149 (224)
+.+++-|++..+
T Consensus 91 ~~~~~~y~e~~~ 102 (319)
T cd06591 91 GPETENYKEMDE 102 (319)
T ss_pred CCCChhHHHHHH
Confidence 777777776654
No 117
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=84.55 E-value=6.6 Score=32.58 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCc--cCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDI--SDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~--~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+.+.+-. +.++++|+..+.|+|.++.+.. .|.- .+|.--+...-+.++++++.+.++++|+++.+
T Consensus 145 e~i~~ia-~~l~~l~~~~~~llpyh~~g~~--Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 145 ENMQQAL-DVLIPLGIKQIHLLPFHQYGEP--KYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHH-HHHHHcCCceEEEecCCccchh--HHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 3344334 6777788888888887765321 1110 01111122224678999999999999999864
No 118
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=84.15 E-value=2.7 Score=31.30 Aligned_cols=41 Identities=32% Similarity=0.544 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vi 129 (224)
..+.+-+ +.+.++|+..+|+.|= ++-+++++.|+++||+++
T Consensus 66 ~~~~~~v-~~~~~~g~~~v~~~~g-------------------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 66 DKVPEIV-DEAAALGVKAVWLQPG-------------------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHH-HHHHHHT-SEEEE-TT-------------------------S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHH-HHHHHcCCCEEEEEcc-------------------------hHHHHHHHHHHHcCCEEE
Confidence 3455555 9999999999999883 344588899999999987
No 119
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=83.99 E-value=4 Score=36.52 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecC-CCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFV-PNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v-~nh~~ 138 (224)
|.+|++++++-|+++||+||-.+- |.|+.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~ 113 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHAL 113 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHH
Confidence 689999999999999999997763 66764
No 120
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=83.81 E-value=2.7 Score=38.52 Aligned_cols=72 Identities=25% Similarity=0.260 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEE-EecCCCCCCccchhHH
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL-LDFVPNHTSNQHEWFK 145 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vi-lD~v~nh~~~~~~w~~ 145 (224)
+.+ ..++++|++.|.+.-= .. +......++... +.++..+.++.+++.|+.++ +|+.++..+..-.-+.
T Consensus 142 e~l-~~l~~~G~~rvslGvQ-S~-------~~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~ 211 (430)
T PRK08208 142 EKL-ALLAARGVNRLSIGVQ-SF-------HDSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWM 211 (430)
T ss_pred HHH-HHHHHcCCCEEEEecc-cC-------CHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHH
Confidence 344 7778888888766531 11 111112233333 67899999999999999864 8999988777666555
Q ss_pred hhh
Q psy8670 146 KSL 148 (224)
Q Consensus 146 ~~~ 148 (224)
+.+
T Consensus 212 ~~l 214 (430)
T PRK08208 212 ESL 214 (430)
T ss_pred HHH
Confidence 554
No 121
>PLN02849 beta-glucosidase
Probab=83.57 E-value=8.7 Score=36.16 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
..+....+.+ +-+|+||+++--++=-++.-.. .|-. .+|+ ...+=.++||++++++||+-|+-+- |- .
T Consensus 76 D~YhrY~eDI-~Lm~~lG~~aYRfSIsWsRI~P-~G~g-----~vN~--~gl~fY~~lid~l~~~GI~P~VTL~--H~-d 143 (503)
T PLN02849 76 DGYHKYKEDV-KLMVETGLDAFRFSISWSRLIP-NGRG-----SVNP--KGLQFYKNFIQELVKHGIEPHVTLF--HY-D 143 (503)
T ss_pred cHHHhHHHHH-HHHHHcCCCeEEEeccHHhcCc-CCCC-----CCCH--HHHHHHHHHHHHHHHcCCeEEEeec--CC-C
Confidence 3467777888 9999999999988743332111 1110 1222 3345578999999999999998773 43 3
Q ss_pred cchhHHh
Q psy8670 140 QHEWFKK 146 (224)
Q Consensus 140 ~~~w~~~ 146 (224)
-..|+.+
T Consensus 144 lP~~L~~ 150 (503)
T PLN02849 144 HPQYLED 150 (503)
T ss_pred CcHHHHH
Confidence 3445543
No 122
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=83.28 E-value=3.9 Score=36.52 Aligned_cols=72 Identities=19% Similarity=0.126 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHH
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~ 145 (224)
+.+ ..|+++|++.|.+..= +. +..-+..+ .+-.+.++..+.++.+++.|+. |-+|+.++..+..-.-+.
T Consensus 101 e~l-~~l~~~Gv~risiGvq--S~------~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~ 170 (360)
T TIGR00539 101 EWC-KGLKGAGINRLSLGVQ--SF------RDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLK 170 (360)
T ss_pred HHH-HHHHHcCCCEEEEecc--cC------ChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHH
Confidence 455 8889999998877642 11 11111233 3346789999999999999995 789999988776655454
Q ss_pred hhh
Q psy8670 146 KSL 148 (224)
Q Consensus 146 ~~~ 148 (224)
+.+
T Consensus 171 ~~l 173 (360)
T TIGR00539 171 EEL 173 (360)
T ss_pred HHH
Confidence 443
No 123
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=83.24 E-value=3.2 Score=37.21 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHH
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~ 145 (224)
+.+ +.++++|++.|.+..= +. +..-...++ +-.+.++..+.++.+++.|+. |-+|++++..+....=+.
T Consensus 109 e~l-~~l~~~G~~rvslGvQ--S~------~~~~L~~l~-R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~ 178 (375)
T PRK05628 109 EFF-AALRAAGFTRVSLGMQ--SA------APHVLAVLD-RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWR 178 (375)
T ss_pred HHH-HHHHHcCCCEEEEecc--cC------CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHH
Confidence 344 7778888888776541 11 111111222 235678899999999999998 999999987776555444
Q ss_pred hhh
Q psy8670 146 KSL 148 (224)
Q Consensus 146 ~~~ 148 (224)
+.+
T Consensus 179 ~tl 181 (375)
T PRK05628 179 ASL 181 (375)
T ss_pred HHH
Confidence 443
No 124
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=82.52 E-value=6.1 Score=34.17 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCC-CCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG-YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~g-Y~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
..+.+....-+ |..+++|+..+.+ ..+-..++ =...|+....+. .++++||+-|+++|++|+|=.
T Consensus 28 g~~t~~~k~yI-DfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 28 GATTETQKRYI-DFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWY 93 (273)
T ss_dssp SSSHHHHHHHH-HHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEE
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEe----ccccccccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEE
Confidence 45777777777 9999999999988 22211111 134455555554 689999999999999987644
No 125
>PRK10426 alpha-glucosidase; Provisional
Probab=82.22 E-value=16 Score=35.37 Aligned_cols=80 Identities=16% Similarity=0.402 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcC--CCeEEEcCcccCC-CCCCCCCcc-CCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 63 KGMIEKLPEHLHDLG--VGAVWISPIFKSP-MADFGYDIS-DYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~-~~~~gY~~~-d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
+.+.+.+ +.+++.| +++|||- -+... ..++|.... +| +.|+ +|- +.++|++++|++|+|+++=+-+ ++
T Consensus 221 ~~v~~v~-~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~-~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P-~v 293 (635)
T PRK10426 221 EVVQKKL-DTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNW-KWDSERYP---QLDSRIKQLNEEGIQFLGYINP-YL 293 (635)
T ss_pred HHHHHHH-HHHHHcCCCeeEEEEe-cccccccccccccccccc-eEChhhCC---CHHHHHHHHHHCCCEEEEEEcC-cc
Confidence 4566666 7788876 6888884 22110 011222111 22 4443 354 4678999999999999988766 45
Q ss_pred CccchhHHhhhc
Q psy8670 138 SNQHEWFKKSLA 149 (224)
Q Consensus 138 ~~~~~w~~~~~~ 149 (224)
..+++-+++..+
T Consensus 294 ~~~~~~y~e~~~ 305 (635)
T PRK10426 294 ASDGDLCEEAAE 305 (635)
T ss_pred CCCCHHHHHHHH
Confidence 567777876553
No 126
>PRK07094 biotin synthase; Provisional
Probab=82.20 E-value=2.9 Score=36.57 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=34.7
Q ss_pred CcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhh
Q psy8670 103 SFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 103 ~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
.+.+ -.+.++..+.++.+++.|+.+-.++++.+.+...+-+.+.+
T Consensus 157 ~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l 201 (323)
T PRK07094 157 KLHP-GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDI 201 (323)
T ss_pred HhCC-CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHH
Confidence 3444 26789999999999999999999999998666655554433
No 127
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=81.60 E-value=3.8 Score=37.34 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCC---HHHHHHHHHHHHHcCCEEEEec
Q psy8670 66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGD---LKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~---~~~~~~lv~~~h~~gi~vilD~ 132 (224)
.+-+ .++|+.|+++|.++=-+..-.. . ...+|.+-. ..-+.+.|+.|.+.||+|++|+
T Consensus 76 ~~~~-~~ik~~G~n~VRiPi~~~~~~~------~--~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 76 EEDF-DQIKSAGFNAVRIPIGYWALQA------T--DGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhHH-HHHHHcCCcEEEcccchhhhhc------c--CCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 3345 9999999999987533222100 0 014555532 2356777999999999999997
No 128
>TIGR03356 BGL beta-galactosidase.
Probab=81.58 E-value=4 Score=37.51 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
..+....+.+ +.++++|++++-++=-++.-.. .|.. .+| -...+-..+++++|+++||++|+++.
T Consensus 51 d~y~~y~eDi-~l~~~~G~~~~R~si~Wsri~p-~g~~-----~~n--~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 51 DHYHRYEEDV-ALMKELGVDAYRFSIAWPRIFP-EGTG-----PVN--PKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred cHHHhHHHHH-HHHHHcCCCeEEcccchhhccc-CCCC-----CcC--HHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 3467777888 9999999999987643322111 1100 111 12356788999999999999999984
No 129
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=81.41 E-value=5.8 Score=34.83 Aligned_cols=78 Identities=15% Similarity=0.271 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCC--CeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 63 KGMIEKLPEHLHDLGV--GAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~--~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
+.+.+-+ +.+++.|| ++|+|-+=+... .+..-.+ +..|+ +|- +.++|++++|++|+++++-+.+ +++.
T Consensus 29 ~~v~~~~-~~~r~~~iP~d~i~ld~~~~~~---~~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P-~i~~ 99 (317)
T cd06599 29 EALLEFI-DKCREHDIPCDSFHLSSGYTSI---EGGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKP-GLLQ 99 (317)
T ss_pred HHHHHHH-HHHHHcCCCeeEEEEecccccc---CCCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCC-cccC
Confidence 4455555 77787665 778775422211 0100112 34453 465 5679999999999999996665 4556
Q ss_pred cchhHHhhhc
Q psy8670 140 QHEWFKKSLA 149 (224)
Q Consensus 140 ~~~w~~~~~~ 149 (224)
+++.|++..+
T Consensus 100 ~~~~y~e~~~ 109 (317)
T cd06599 100 DHPRYKELKE 109 (317)
T ss_pred CCHHHHHHHH
Confidence 6677776654
No 130
>PRK01060 endonuclease IV; Provisional
Probab=81.01 E-value=8 Score=32.81 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE---EEEecC--CCCC
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK---ILLDFV--PNHT 137 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~---vilD~v--~nh~ 137 (224)
.++.+.+ +.++++|+++|.|.+--+ ..+ .+..-+.++++++.+.+.++|++ +.+-.. +|-+
T Consensus 12 ~~~~~~l-~~~~~~G~d~vEl~~~~p-----~~~--------~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~ 77 (281)
T PRK01060 12 GGLEGAV-AEAAEIGANAFMIFTGNP-----QQW--------KRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLG 77 (281)
T ss_pred CCHHHHH-HHHHHcCCCEEEEECCCC-----CCC--------cCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCC
Confidence 3366677 999999999999965311 111 11123678899999999999998 444333 3555
Q ss_pred Cccc
Q psy8670 138 SNQH 141 (224)
Q Consensus 138 ~~~~ 141 (224)
+.+.
T Consensus 78 ~~d~ 81 (281)
T PRK01060 78 NPNK 81 (281)
T ss_pred CCCH
Confidence 5444
No 131
>PLN02877 alpha-amylase/limit dextrinase
Probab=80.69 E-value=0.37 Score=48.45 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.2
Q ss_pred HHHHHhhcccCCCCCcHHHHH
Q psy8670 194 IKILLDFVPNHTSNQHEWFKK 214 (224)
Q Consensus 194 i~ii~d~v~nh~~~~~~W~~~ 214 (224)
|+||||.|+||++..++|...
T Consensus 480 I~VImDVVyNHt~~~g~~~~~ 500 (970)
T PLN02877 480 LRVVLDVVYNHLHSSGPFDEN 500 (970)
T ss_pred CEEEEEECCccccCCCCcchh
Confidence 589999999999998888743
No 132
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=80.56 E-value=2.7 Score=39.60 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCC-CCCccCCCCcCCCCCCHHH
Q psy8670 57 DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF-GYDISDYLSFEPLFGDLKD 113 (224)
Q Consensus 57 ~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~-gY~~~d~~~v~~~~G~~~~ 113 (224)
-++|||-.....+++.+++.|....+|.|+++...... .|++.+=+..||-|=+.+.
T Consensus 29 ~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~~~~ssPYs~~S~~a~NplyI~le~ 86 (513)
T TIGR00217 29 WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPADFTRSPPYSISSARALNVYYIDLEA 86 (513)
T ss_pred CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCCCcCchhcccccHHhcChhh
Confidence 56899999998877999999999999999998754444 4999998898887765543
No 133
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=80.48 E-value=4.7 Score=37.78 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEecCCCCCCccchhHH
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGI-KILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi-~vilD~v~nh~~~~~~w~~ 145 (224)
+++ ..|++.|++.|.+.|= +. +..-+..+.. -.+.+++.+.++.+++.|+ .|-+|+.++-.+..-.=+.
T Consensus 270 e~L-~~Lk~~Gv~RISIGvQ--S~------~d~vLk~igR-~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~ 339 (488)
T PRK08207 270 EKL-EVLKKYGVDRISINPQ--TM------NDETLKAIGR-HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVK 339 (488)
T ss_pred HHH-HHHHhcCCCeEEEcCC--cC------CHHHHHHhCC-CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHH
Confidence 345 8889999998887762 11 1111123332 3678999999999999999 7889999887665554444
Q ss_pred hhh
Q psy8670 146 KSL 148 (224)
Q Consensus 146 ~~~ 148 (224)
+.+
T Consensus 340 ~tl 342 (488)
T PRK08207 340 HTL 342 (488)
T ss_pred HHH
Confidence 443
No 134
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=80.32 E-value=9.7 Score=33.49 Aligned_cols=74 Identities=12% Similarity=0.245 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC-----CCCCCHHHHHHHHHHHHHcCCEEEEecC-C
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE-----PLFGDLKDFETLKERLHALGIKILLDFV-P 134 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~-----~~~G~~~~~~~lv~~~h~~gi~vilD~v-~ 134 (224)
+.+.+...+ +.++..++|.+++== ....++.+.+..|-.+- ..+=|.+|++++++-|+++||+||-.+- |
T Consensus 16 ~~~~ik~~I-d~ma~~KlN~lh~Hl---tDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~P 91 (311)
T cd06570 16 PVAVIKRQL-DAMASVKLNVFHWHL---TDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVP 91 (311)
T ss_pred CHHHHHHHH-HHHHHhCCeEEEEEE---ecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCc
Confidence 456666666 999999999777631 00011222222221211 1123789999999999999999997663 6
Q ss_pred CCCC
Q psy8670 135 NHTS 138 (224)
Q Consensus 135 nh~~ 138 (224)
.|+.
T Consensus 92 GH~~ 95 (311)
T cd06570 92 GHAS 95 (311)
T ss_pred cchH
Confidence 7876
No 135
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=80.19 E-value=8.3 Score=33.95 Aligned_cols=78 Identities=10% Similarity=0.241 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEE--cC---c----ccCCCCCCCCCc------cCCCC--cCCCCCCHHHHHHHHHHHHH
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWI--SP---I----FKSPMADFGYDI------SDYLS--FEPLFGDLKDFETLKERLHA 123 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l--~P---i----~~~~~~~~gY~~------~d~~~--v~~~~G~~~~~~~lv~~~h~ 123 (224)
+.+.+.+.+ +.++..++|.+++ +- + ++.......|.. ..+.. -...+=|.+|++++++-|++
T Consensus 15 ~~~~ik~~i-d~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~ 93 (326)
T cd06564 15 SMDFLKDII-KTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKD 93 (326)
T ss_pred CHHHHHHHH-HHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHH
Confidence 456666666 9999999999987 11 1 000000000000 00000 11222378999999999999
Q ss_pred cCCEEEEecC-CCCCCc
Q psy8670 124 LGIKILLDFV-PNHTSN 139 (224)
Q Consensus 124 ~gi~vilD~v-~nh~~~ 139 (224)
+||+||-.+- |.|+..
T Consensus 94 rgI~vIPEID~PGH~~a 110 (326)
T cd06564 94 RGVNIIPEIDSPGHSLA 110 (326)
T ss_pred cCCeEeccCCCcHHHHH
Confidence 9999997663 667643
No 136
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=79.92 E-value=15 Score=32.55 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHcC--CCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 61 DLKGMIEKLPEHLHDLG--VGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
+-+.+.+-+ +.+++.| ++.|+|-.-+. .+|. + ++.|+ +|- +.++|++++|++|++|++-+.+- +
T Consensus 22 ~~~ev~~~~-~~~~~~~iP~d~i~lD~~~~-----~~~~--~-f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~-v 88 (339)
T cd06603 22 DQEDVKEVD-AGFDEHDIPYDVIWLDIEHT-----DGKR--Y-FTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH-I 88 (339)
T ss_pred CHHHHHHHH-HHHHHcCCCceEEEEChHHh-----CCCC--c-eEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-e
Confidence 445566555 7777655 56776653221 1222 2 35565 465 45789999999999999988664 3
Q ss_pred Cc--cchhHHhhh
Q psy8670 138 SN--QHEWFKKSL 148 (224)
Q Consensus 138 ~~--~~~w~~~~~ 148 (224)
.. +++-+++..
T Consensus 89 ~~~~~~~~y~e~~ 101 (339)
T cd06603 89 KRDDGYYVYKEAK 101 (339)
T ss_pred ecCCCCHHHHHHH
Confidence 32 245565544
No 137
>PRK10658 putative alpha-glucosidase; Provisional
Probab=79.74 E-value=6.6 Score=38.26 Aligned_cols=70 Identities=26% Similarity=0.304 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhH
Q psy8670 113 DFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYL 192 (224)
Q Consensus 113 ~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~ 192 (224)
+.+.|++++|++|+++++=+.+ +++.+++-|++..+. +||+-+ .. +..|....+.....-..|.||+.+
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~~f~e~~~~-----gy~vk~---~~--G~~~~~~~W~g~~~~~Dftnp~ar 394 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSPLFKEGKEK-----GYLLKR---PD--GSVWQWDKWQPGMAIVDFTNPDAC 394 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCchHHHHHHHC-----CeEEEC---CC--CCEeeeeecCCCceeecCCCHHHH
Confidence 4567999999999999988776 567778888765543 455511 11 223333333333344677888776
Q ss_pred H
Q psy8670 193 R 193 (224)
Q Consensus 193 ~ 193 (224)
+
T Consensus 395 ~ 395 (665)
T PRK10658 395 K 395 (665)
T ss_pred H
Confidence 5
No 138
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=78.70 E-value=4.3 Score=35.67 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHHcCCC-eEEEcCcccCCCCCCCCCccCC-CCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 71 EHLHDLGVG-AVWISPIFKSPMADFGYDISDY-LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 71 ~~l~~lG~~-~i~l~Pi~~~~~~~~gY~~~d~-~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
..++++|++ .|.+.. ++. +..-. ..++..+ +.+++.+.++.+|++||+|..++.++-.
T Consensus 121 ~~l~~aG~~~~v~iG~--ES~------~d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G~P 180 (313)
T TIGR01210 121 EELRKIGVNVEVAVGL--ETA------NDRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFKPP 180 (313)
T ss_pred HHHHHcCCCEEEEEec--CcC------CHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEecCC
Confidence 667777776 465554 221 11111 1355555 7889999999999999999999998743
No 139
>PRK05660 HemN family oxidoreductase; Provisional
Probab=78.50 E-value=6.2 Score=35.54 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEE-EEecCCCCCCccchhHH
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKI-LLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~v-ilD~v~nh~~~~~~w~~ 145 (224)
+++ ..++++|++.|.+..= + .+..-+..+.. ..+.++..+-++.+++.|++. -+|+.++..+....=+.
T Consensus 108 e~l-~~Lk~~Gv~risiGvq--S------~~~~~L~~l~r-~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~ 177 (378)
T PRK05660 108 DRF-VGYQRAGVNRISIGVQ--S------FSEEKLKRLGR-IHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEAL 177 (378)
T ss_pred HHH-HHHHHcCCCEEEeccC--c------CCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHH
Confidence 556 8888889888877641 1 11222223332 367889999999999999975 59999887776555444
Q ss_pred hhh
Q psy8670 146 KSL 148 (224)
Q Consensus 146 ~~~ 148 (224)
+.+
T Consensus 178 ~~l 180 (378)
T PRK05660 178 DDL 180 (378)
T ss_pred HHH
Confidence 443
No 140
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=78.09 E-value=8.1 Score=36.45 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC---CCCCCCCccCCCCcCCCCCCHHHHHHH
Q psy8670 57 DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP---MADFGYDISDYLSFEPLFGDLKDFETL 117 (224)
Q Consensus 57 ~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~---~~~~gY~~~d~~~v~~~~G~~~~~~~l 117 (224)
-|+|+|-.+...+++-+.+-|.+.+.++|+.+.. ..++.|.+.+=..+|+.|=+.+.+-++
T Consensus 29 ~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~~~~~~~SPYs~~S~~a~N~~~Id~~~l~e~ 92 (520)
T COG1640 29 WGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGPAYEEDSPYSPSSRRALNPLYIDVEALPEF 92 (520)
T ss_pred CCccchhhHHHHHHHHHHHccCCeEEeccCCcccccccCCCCCCchhhhccCceeecHHHhhhh
Confidence 4689999999998677779999999999998876 345788888888888888776666555
No 141
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=77.46 E-value=7.3 Score=37.02 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCcc
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQ 140 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~ 140 (224)
+-+.+.+.+ +..|+.|+.-..|=-=+.....+.--+..|++.-..+|++ .+..|+++.|++|++.=+=+-|--++.+
T Consensus 307 t~e~ile~v-k~akk~gvE~FvlDDGwfg~rndd~~slGDWlv~seKfPs--giE~li~~I~e~Gl~fGIWlePemvs~d 383 (687)
T COG3345 307 TEEEILENV-KEAKKFGVELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPS--GIEELIEAIAENGLIFGIWLEPEMVSED 383 (687)
T ss_pred CHHHHHHHH-HHHhhcCeEEEEEccccccccCcchhhhhceecchhhccc--cHHHHHHHHHHcCCccceeecchhcccc
Confidence 557788888 9999999766654333332222222345566555566653 4668899999999998888888888999
Q ss_pred chhHHhhhcCCCCccccccchh
Q psy8670 141 HEWFKKSLANIPPYKCASLLAR 162 (224)
Q Consensus 141 ~~w~~~~~~~~~~~~~~f~w~~ 162 (224)
+..|+ +++||++-..
T Consensus 384 Sdlfr-------qHPDWvvk~~ 398 (687)
T COG3345 384 SDLFR-------QHPDWVVKVN 398 (687)
T ss_pred hHHHh-------hCCCeEEecC
Confidence 99999 9999998433
No 142
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=76.44 E-value=7.1 Score=34.88 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHH
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~ 145 (224)
+++ +.++++|++.|.+.- .... ..-...+.. -.+.++..+.++.+++.|+. |-+|+.++..+..-.=++
T Consensus 104 e~l-~~lk~~G~nrisiGv-QS~~-------d~vL~~l~R-~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~ 173 (353)
T PRK05904 104 SQI-NLLKKNKVNRISLGV-QSMN-------NNILKQLNR-THTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLD 173 (353)
T ss_pred HHH-HHHHHcCCCEEEEec-ccCC-------HHHHHHcCC-CCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHH
Confidence 455 888889999887653 2111 111112233 35788999999999999997 889999987776555454
Q ss_pred hhh
Q psy8670 146 KSL 148 (224)
Q Consensus 146 ~~~ 148 (224)
+.+
T Consensus 174 ~tl 176 (353)
T PRK05904 174 EVF 176 (353)
T ss_pred HHH
Confidence 444
No 143
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=76.09 E-value=7.2 Score=34.28 Aligned_cols=81 Identities=21% Similarity=0.454 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHcC--CCeEEEcCcccC-CCCCCCCCc-cCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 61 DLKGMIEKLPEHLHDLG--VGAVWISPIFKS-PMADFGYDI-SDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG--~~~i~l~Pi~~~-~~~~~gY~~-~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
+-+.+.+-+ +.+++.| +++|||- .... .....|+.. .+ ++.|+ +|- +.++|++++|++|++|++-+.+
T Consensus 21 s~~~v~~~~-~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~P- 93 (317)
T cd06594 21 GTDKVLEAL-EKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYINP- 93 (317)
T ss_pred CHHHHHHHH-HHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEecC-
Confidence 446666666 7778765 4678874 3311 011123321 13 25665 455 4779999999999999986654
Q ss_pred CCCccchh-HHhhh
Q psy8670 136 HTSNQHEW-FKKSL 148 (224)
Q Consensus 136 h~~~~~~w-~~~~~ 148 (224)
++..++.- +++..
T Consensus 94 ~v~~~~~~~y~~~~ 107 (317)
T cd06594 94 YLADDGPLYYEEAK 107 (317)
T ss_pred ceecCCchhHHHHH
Confidence 44444333 45443
No 144
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=76.03 E-value=7 Score=36.20 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.++..+.++.+++.||.+..++++..-+...+=+.+.+
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti 359 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTI 359 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHH
Confidence 578999999999999999999999887666555454443
No 145
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=75.68 E-value=4.9 Score=34.18 Aligned_cols=47 Identities=21% Similarity=0.134 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 68 KLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 68 ~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
+.+++++++||++|.++-=+- .. +.++..++|+.++++|++|+-.+=
T Consensus 88 ~yl~~~k~lGf~~IEiSdGti---------~l----------~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 88 EYLEECKELGFDAIEISDGTI---------DL----------PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHCT-SEEEE--SSS----------------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHcCCCEEEecCCce---------eC----------CHHHHHHHHHHHHHCCCEEeeccc
Confidence 333889999999998864211 11 247899999999999999998774
No 146
>PLN02801 beta-amylase
Probab=75.40 E-value=22 Score=33.38 Aligned_cols=90 Identities=21% Similarity=0.384 Sum_probs=57.4
Q ss_pred eEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcC---cccCCCCCCCCCccCCCCcCCCCCCHHHHHHHH
Q psy8670 42 VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISP---IFKSPMADFGYDISDYLSFEPLFGDLKDFETLK 118 (224)
Q Consensus 42 viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~P---i~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv 118 (224)
.+|-..|-...+ .......-+++.++| ..||.+||++|-+-= +.|.. |=.-. ++...++|+
T Consensus 17 pvyVMlPLd~V~-~~~~l~~~~~l~~~L-~~LK~~GVdGVmvDVWWGiVE~~----~P~~Y----------dWsgY~~l~ 80 (517)
T PLN02801 17 PVYVMLPLGVVT-ADNVLEDEEGLEKQL-KRLKEAGVDGVMVDVWWGIVESK----GPKQY----------DWSAYRSLF 80 (517)
T ss_pred eEEEeeecceec-CCCccCCHHHHHHHH-HHHHHcCCCEEEEeeeeeeeccC----CCCcc----------CcHHHHHHH
Confidence 355555533322 222355678899999 999999999996532 22211 10111 247889999
Q ss_pred HHHHHcCCEEEEecCCCCCCcc---------chhHHhh
Q psy8670 119 ERLHALGIKILLDFVPNHTSNQ---------HEWFKKS 147 (224)
Q Consensus 119 ~~~h~~gi~vilD~v~nh~~~~---------~~w~~~~ 147 (224)
+.+++.|||+..=+-+.-|+.+ ..|+.+.
T Consensus 81 ~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~~~ 118 (517)
T PLN02801 81 ELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQWVRDV 118 (517)
T ss_pred HHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 9999999999777776545432 5677754
No 147
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=75.32 E-value=26 Score=30.92 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHHcCC--CeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 61 DLKGMIEKLPEHLHDLGV--GAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~--~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
+-+.+.+.+ +.+++.|| ++|+|-.-+.. +|. + ++.|+ +|- +.++|++++|++|+++++=+.+ ++
T Consensus 22 ~~~~v~~~~-~~~~~~~iP~d~i~lD~~~~~-----~~~--~-f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v 88 (339)
T cd06604 22 PEEEVREIA-DEFRERDIPCDAIYLDIDYMD-----GYR--V-FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GV 88 (339)
T ss_pred CHHHHHHHH-HHHHHhCCCcceEEECchhhC-----CCC--c-eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ce
Confidence 445566666 77787664 77877544332 222 2 34554 465 4578999999999999876544 33
Q ss_pred Cc--cchhHHhhh
Q psy8670 138 SN--QHEWFKKSL 148 (224)
Q Consensus 138 ~~--~~~w~~~~~ 148 (224)
.. +.+-+++..
T Consensus 89 ~~~~~~~~~~e~~ 101 (339)
T cd06604 89 KVDPGYDVYEEGL 101 (339)
T ss_pred eCCCCChHHHHHH
Confidence 32 334555444
No 148
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=75.31 E-value=13 Score=27.31 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
.+.+...+..+|...+.+.+..............|..-+=..-|...++.+.++.||++|++||.
T Consensus 15 a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 15 ARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 33343556778999987765321111001112223222234447788999999999999999865
No 149
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=75.09 E-value=6.9 Score=36.14 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=41.3
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHHhh
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFKKS 147 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~~~ 147 (224)
..|+++|++.|.+.. ++ .+..-...++. -.+.++..+.++.+++.|++ |-+|+.++..+..-.=+.+.
T Consensus 156 ~~L~~~G~~rvsiGv--QS------~~~~vl~~l~R-~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~t 224 (453)
T PRK13347 156 QALAALGFNRASFGV--QD------FDPQVQKAINR-IQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRET 224 (453)
T ss_pred HHHHHcCCCEEEECC--CC------CCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHH
Confidence 677777777776654 11 11111122333 36778888899999999986 77888877655444434333
No 150
>PRK15447 putative protease; Provisional
Probab=74.66 E-value=14 Score=32.15 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
|+++++. ..+++.|+++|++.--. .+.. .+ | +.+++++.++.+|++|.+|.+=+
T Consensus 15 ~~~~~~~----~~~~~~gaDaVY~g~~~-~~~R------~~-------f-~~~~l~e~v~~~~~~gkkvyva~ 68 (301)
T PRK15447 15 ETVRDFY----QRAADSPVDIVYLGETV-CSKR------RE-------L-KVGDWLELAERLAAAGKEVVLST 68 (301)
T ss_pred CCHHHHH----HHHHcCCCCEEEECCcc-CCCc------cC-------C-CHHHHHHHHHHHHHcCCEEEEEe
Confidence 4555544 45588999999998311 1111 01 2 67999999999999999998844
No 151
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=74.33 E-value=7.1 Score=36.04 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=44.2
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHHhhh
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~~~~ 148 (224)
..|+++|++.|.+..= +. +..-...++. -.+.++..+.++.+++.|++ |-+|+.++..+.+..=+.+.+
T Consensus 155 ~~lk~~G~~risiGvq--S~------~~~~l~~l~r-~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl 224 (455)
T TIGR00538 155 DALRDEGFNRLSFGVQ--DF------NKEVQQAVNR-IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTL 224 (455)
T ss_pred HHHHHcCCCEEEEcCC--CC------CHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHH
Confidence 7778888887776541 11 1111112333 35678888999999999996 668988877666555554444
No 152
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=74.07 E-value=9.2 Score=35.29 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=44.2
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEecCCCCCCccchhHHhhh
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGI-KILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi-~vilD~v~nh~~~~~~w~~~~~ 148 (224)
..++++|++.|.+.. ++. +..-...++. -.+.++..+.++.+++.|+ .|-+|+.++..+..-.=+.+.+
T Consensus 155 ~~l~~aG~~risiGv--qS~------~~~~L~~l~r-~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l 224 (453)
T PRK09249 155 DALRELGFNRLSLGV--QDF------DPEVQKAVNR-IQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTL 224 (453)
T ss_pred HHHHHcCCCEEEECC--CCC------CHHHHHHhCC-CCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHH
Confidence 777777877776653 111 1111112222 3578899999999999999 7889998887765554444443
No 153
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=73.81 E-value=9.7 Score=34.59 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHH
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~ 145 (224)
+++ ..++++|++.|.+..= +. +..-...++. --+.++..+.++.+++.|+. |-+|+.++.-+...+=+.
T Consensus 116 e~l-~~l~~~GvnrislGvQ--S~------~d~~L~~l~R-~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~ 185 (400)
T PRK07379 116 EQL-QGYRSLGVNRVSLGVQ--AF------QDELLALCGR-SHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQ 185 (400)
T ss_pred HHH-HHHHHCCCCEEEEEcc--cC------CHHHHHHhCC-CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHH
Confidence 445 7888888888877641 11 1111112322 24678889999999999998 779999887765544444
Q ss_pred hh
Q psy8670 146 KS 147 (224)
Q Consensus 146 ~~ 147 (224)
+.
T Consensus 186 ~t 187 (400)
T PRK07379 186 AS 187 (400)
T ss_pred HH
Confidence 43
No 154
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=73.68 E-value=12 Score=33.20 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHH
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~ 145 (224)
+++ ..++++||+.|.+.. ... +......++ +-.+.++..+.++.+++.|+. |-+|+.++-.+.+-.=+.
T Consensus 99 e~l-~~l~~~GvnRiSiGv-QS~-------~~~~L~~lg-R~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~ 168 (350)
T PRK08446 99 AWL-KGMKNLGVNRISFGV-QSF-------NEDKLKFLG-RIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLK 168 (350)
T ss_pred HHH-HHHHHcCCCEEEEec-ccC-------CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHH
Confidence 556 888889999887653 211 111112232 234678999999999999996 669999987765444344
Q ss_pred hhh
Q psy8670 146 KSL 148 (224)
Q Consensus 146 ~~~ 148 (224)
+.+
T Consensus 169 ~~l 171 (350)
T PRK08446 169 EEL 171 (350)
T ss_pred HHH
Confidence 443
No 155
>PTZ00445 p36-lilke protein; Provisional
Probab=73.59 E-value=12 Score=31.21 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEE------cCcccCCCCCCCCCccCCCCcCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWI------SPIFKSPMADFGYDISDYLSFEPLFGD--LKDFETLKERLHALGIKILL 130 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l------~Pi~~~~~~~~gY~~~d~~~v~~~~G~--~~~~~~lv~~~h~~gi~vil 130 (224)
...++.+++.|++.||++|-+ .++. +.||.--+ .-+..+++ ..+|+.+++++++.||+|++
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~H-----sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASDFDLTMITKH-----SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEecchhhhhhhh-----cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 455666668899999999954 1222 12333222 11222221 35799999999999999965
No 156
>KOG0496|consensus
Probab=72.82 E-value=11 Score=36.43 Aligned_cols=75 Identities=12% Similarity=0.221 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc--
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN-- 139 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~-- 139 (224)
+-+.+.+ ..+|++|+++|..-=.+.. ......| .|.+.-|+.++++++|+.|+-|+|=+=+-=|++
T Consensus 49 e~W~~~i-~k~k~~Gln~IqtYVfWn~Hep~~g~y----------~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~ 117 (649)
T KOG0496|consen 49 EMWPDLI-KKAKAGGLNVIQTYVFWNLHEPSPGKY----------DFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWN 117 (649)
T ss_pred hhhHHHH-HHHHhcCCceeeeeeecccccCCCCcc----------cccchhHHHHHHHHHHHCCeEEEecCCCeEEeccc
Confidence 3455566 8889999999987543322 1111112 357788999999999999999999776544442
Q ss_pred --cchhHHhhh
Q psy8670 140 --QHEWFKKSL 148 (224)
Q Consensus 140 --~~~w~~~~~ 148 (224)
.-||+....
T Consensus 118 ~GG~P~wL~~~ 128 (649)
T KOG0496|consen 118 FGGLPWWLRNV 128 (649)
T ss_pred CCCcchhhhhC
Confidence 334555544
No 157
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=72.50 E-value=11 Score=32.96 Aligned_cols=80 Identities=11% Similarity=0.166 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHcC--CCeEEEcCcccCCCC-CCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 62 LKGMIEKLPEHLHDLG--VGAVWISPIFKSPMA-DFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 62 l~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~~~-~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
-+.+.+.+ +.+++.| ++.|+|-.=+..... ...|. + ++.|+ +|.+ .++|++++|++|++|++=+.+ ++
T Consensus 23 ~~~v~~~~-~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~v~P-~v 94 (317)
T cd06598 23 WQEVDDTI-KTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPD---PAGMIADLAKKGVKTIVITEP-FV 94 (317)
T ss_pred HHHHHHHH-HHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCC---HHHHHHHHHHcCCcEEEEEcC-cc
Confidence 35565555 7777755 567777543321100 01111 3 35554 4664 468999999999999998765 46
Q ss_pred CccchhHHhhhc
Q psy8670 138 SNQHEWFKKSLA 149 (224)
Q Consensus 138 ~~~~~w~~~~~~ 149 (224)
+.+++.+++..+
T Consensus 95 ~~~~~~y~e~~~ 106 (317)
T cd06598 95 LKNSKNWGEAVK 106 (317)
T ss_pred cCCchhHHHHHh
Confidence 666777765543
No 158
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=72.44 E-value=12 Score=33.64 Aligned_cols=72 Identities=11% Similarity=0.021 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHH
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~ 145 (224)
+++ +.++++||+.|.|.. ... +..-...++. --+.++..+-++.+++.|+. |-+|+.++.-+....=+.
T Consensus 104 ~~l-~~l~~~G~nrislGv-QS~-------~~~~L~~l~R-~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~ 173 (370)
T PRK06294 104 SYI-RALALTGINRISIGV-QTF-------DDPLLKLLGR-THSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFI 173 (370)
T ss_pred HHH-HHHHHCCCCEEEEcc-ccC-------CHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHH
Confidence 456 899999999997764 111 1111122332 23577888889999999995 889999887776555444
Q ss_pred hhh
Q psy8670 146 KSL 148 (224)
Q Consensus 146 ~~~ 148 (224)
+.+
T Consensus 174 ~~l 176 (370)
T PRK06294 174 VDL 176 (370)
T ss_pred HHH
Confidence 444
No 159
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=72.36 E-value=37 Score=30.14 Aligned_cols=64 Identities=20% Similarity=0.387 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHcC--CCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 62 LKGMIEKLPEHLHDLG--VGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 62 l~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
-+.+.+.+ +.+++.| ++.|+|-.-+.. ++ .+ ++.|+ +|-++ ..++|++++|++|+||++=+.+.
T Consensus 23 ~~~v~~~~-~~~r~~~iP~d~i~lD~~~~~-----~~--~~-f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P~ 89 (339)
T cd06602 23 VDEVKEVV-ENMRAAGIPLDVQWNDIDYMD-----RR--RD-FTLDPVRFPGL-KMPEFVDELHANGQHYVPILDPA 89 (339)
T ss_pred HHHHHHHH-HHHHHhCCCcceEEECccccc-----Cc--cc-eecccccCCCc-cHHHHHHHHHHCCCEEEEEEeCc
Confidence 35566666 7777755 567776432221 11 12 24444 34433 12889999999999999976553
No 160
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=72.32 E-value=10 Score=32.27 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vi 129 (224)
+.+.+ +.++++|+++|.|.+-. .. . .+++.--+.++.+++.+.+.++||+|.
T Consensus 18 ~~e~l-~~~~~~G~~~VEl~~~~-~~---~--------~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 18 WLERL-QLAKTCGFDFVEMSVDE-TD---D--------RLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHH-HHHHHcCCCEEEEecCC-cc---c--------hhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 67788 99999999999995321 10 0 111111246889999999999999984
No 161
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=72.23 E-value=12 Score=31.98 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=36.6
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
..|+++|++.+.+.. +. ++.-|..+.+. .+.++..+.++.+|+.|++|...+++.+
T Consensus 127 ~~Lk~aG~~~v~i~~--E~-------~~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 127 KRLKDAGLDYYNHNL--DT-------SQEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHcCCCEEEEcc--cC-------CHHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 556666666665542 11 11112233332 4788999999999999999998888876
No 162
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=71.91 E-value=12 Score=33.59 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHHhh
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFKKS 147 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~~~ 147 (224)
..++++|++.|.+..= +. +..-+..+. +-.+.++..+.++.+++.|+. |-+|+.++..+....=+.+.
T Consensus 104 ~~l~~~G~~rvsiGvq--S~------~~~~l~~l~-r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~ 172 (377)
T PRK08599 104 QVLKDSGVNRISLGVQ--TF------NDELLKKIG-RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKES 172 (377)
T ss_pred HHHHHcCCCEEEEecc--cC------CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHH
Confidence 6777777777766541 11 111111222 235678999999999999997 66899988766544444333
No 163
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=70.89 E-value=11 Score=37.54 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhH
Q psy8670 113 DFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYL 192 (224)
Q Consensus 113 ~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~ 192 (224)
+-++|++..|++|||+++=+.| +...+++-++...+. .||+-+ .. +..|....+....+-..|.|||.+
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P-~i~~d~~~~~e~~~~-----Gy~~k~----~~-g~~~~~~~w~~~~a~~DFtnp~~r 390 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINP-YIKQDSPLFKEAIEK-----GYFVKD----PD-GEIYQADFWPGNSAFPDFTNPDAR 390 (772)
T ss_pred CHHHHHHHHHhcCceEEEEecc-ccccCCchHHHHHHC-----CeEEEC----CC-CCEeeecccCCcccccCCCCHHHH
Confidence 3459999999999999998887 466777777765533 566511 11 334444444434456789999977
Q ss_pred H
Q psy8670 193 R 193 (224)
Q Consensus 193 ~ 193 (224)
+
T Consensus 391 ~ 391 (772)
T COG1501 391 E 391 (772)
T ss_pred H
Confidence 5
No 164
>PRK06256 biotin synthase; Validated
Probab=70.74 E-value=6.9 Score=34.42 Aligned_cols=56 Identities=18% Similarity=0.077 Sum_probs=38.0
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
..|++.|++.+.+.. ++ +..-|..+.+. .+.++..+.++.+|+.||++...+++.+
T Consensus 156 ~~LkeaG~~~v~~~l--Et-------s~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 156 ERLKEAGVDRYNHNL--ET-------SRSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHhCCCEEecCC--cc-------CHHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 666666766665531 21 11112334443 4789999999999999999999999876
No 165
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.20 E-value=25 Score=22.45 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vi 129 (224)
.|.|..+. ..|++.|++-+-+...........++....+ .++- .+.+++.+++++++++|.++.
T Consensus 9 ~G~L~~i~----~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i-~v~~--~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 9 PGQLAKLL----AVIAEAGANIIEVSHDRAFKTLPLGEVEVEL-TLET--RGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CChHHHHH----HHHHHcCCCEEEEEEEeccCCCCCceEEEEE-EEEe--CCHHHHHHHHHHHHHcCCEEe
Confidence 45544443 5668888888766532221111133333332 3333 457889999999999998873
No 166
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=69.07 E-value=14 Score=31.26 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+.+.+ +.++++|+++|.+.+.... ....+.++ +.++++++.+.+.++||+|..
T Consensus 18 ~~e~~-~~~~~~G~~~iEl~~~~~~----~~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERL-VFAKELGFDFVEMSVDESD----ERLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHH-HHHHHcCCCeEEEecCCcc----cccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 56677 8999999999999643110 00111111 356899999999999999863
No 167
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=69.00 E-value=19 Score=29.83 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKI 128 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~v 128 (224)
+...+ ..|+++|.+.|-+.|+-- +-..+|++.+.++|-++|+.+
T Consensus 137 vetAi-aml~dmG~~SiKffPm~G-------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAI-AMLKDMGGSSIKFFPMGG-------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHH-HHHHHTT--EEEE---TT-------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHH-HHHHHcCCCeeeEeecCC-------------------cccHHHHHHHHHHHHHcCcee
Confidence 44556 889999999999998632 234789999999999999987
No 168
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=68.67 E-value=8.9 Score=34.97 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcC---cccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISP---IFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~P---i~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
++++++..+| ..||++||++|-+-= +.|.. |=.-. +....++|.+.+++.|||+..=+-+.-
T Consensus 13 ~~~~~~~~~L-~~LK~~GV~GVmvdvWWGiVE~~----~p~~y----------dWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 13 NDWNALEAQL-RALKSAGVDGVMVDVWWGIVEGE----GPQQY----------DWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp SECHHHHHHH-HHHHHTTEEEEEEEEEHHHHTGS----STTB-------------HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CcHHHHHHHH-HHHHHcCCcEEEEEeEeeeeccC----CCCcc----------CcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 5678999999 999999999996642 22221 11122 247889999999999999988776654
Q ss_pred CC
Q psy8670 137 TS 138 (224)
Q Consensus 137 ~~ 138 (224)
|+
T Consensus 78 cG 79 (402)
T PF01373_consen 78 CG 79 (402)
T ss_dssp BS
T ss_pred CC
Confidence 54
No 169
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=68.33 E-value=5.3 Score=34.73 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC
Q psy8670 111 LKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v 133 (224)
+++++++.+.||++||+|.+|--
T Consensus 144 ~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 144 LEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEET
T ss_pred HHHHHHHHHHHHhCceEEEEehh
Confidence 69999999999999999999974
No 170
>PLN02803 beta-amylase
Probab=67.96 E-value=30 Score=32.70 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcC---cccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISP---IFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~P---i~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
..-+++.++| ..||.+||++|-+-= +.|.. |=.-. ++...++|.+.+++.|||+..=+-+.-
T Consensus 104 ~~~~~l~~~L-~~LK~~GVdGVmvDVWWGiVE~~----~p~~Y----------dWsgY~~l~~mvr~~GLKlq~vmSFHq 168 (548)
T PLN02803 104 NKPRAMNASL-MALRSAGVEGVMVDAWWGLVEKD----GPMKY----------NWEGYAELVQMVQKHGLKLQVVMSFHQ 168 (548)
T ss_pred cCHHHHHHHH-HHHHHcCCCEEEEEeeeeeeccC----CCCcC----------CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 4458899999 999999999996532 22211 11112 247889999999999999977776654
Q ss_pred CC
Q psy8670 137 TS 138 (224)
Q Consensus 137 ~~ 138 (224)
|+
T Consensus 169 CG 170 (548)
T PLN02803 169 CG 170 (548)
T ss_pred cC
Confidence 44
No 171
>PLN02905 beta-amylase
Probab=67.66 E-value=29 Score=33.53 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcC---cccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISP---IFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~P---i~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
..+.+++.++| ..||.+||++|-+-= |.|.. |=.-. ++...++|++.+++.|||+..=+-+.
T Consensus 282 l~~~~al~a~L-~aLK~aGVdGVmvDVWWGiVE~~----gP~~Y----------dWsgY~~L~~mvr~~GLKlqvVMSFH 346 (702)
T PLN02905 282 LADPDGLLKQL-RILKSINVDGVKVDCWWGIVEAH----APQEY----------NWNGYKRLFQMVRELKLKLQVVMSFH 346 (702)
T ss_pred ccCHHHHHHHH-HHHHHcCCCEEEEeeeeeeeecC----CCCcC----------CcHHHHHHHHHHHHcCCeEEEEEEec
Confidence 46788999999 999999999996532 12211 11112 24788999999999999997777665
Q ss_pred CCC
Q psy8670 136 HTS 138 (224)
Q Consensus 136 h~~ 138 (224)
-|+
T Consensus 347 qCG 349 (702)
T PLN02905 347 ECG 349 (702)
T ss_pred ccC
Confidence 454
No 172
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=67.41 E-value=19 Score=30.58 Aligned_cols=75 Identities=19% Similarity=0.481 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHH--cCCCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 60 GDLKGMIEKLPEHLHD--LGVGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~--lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
.+-+.+.+.+ +.+++ +-+++++|-.-+.....+.+ +..|+ +|.+ .++|++.+|++|+++++-+.+.
T Consensus 21 ~~~~~v~~~~-~~~~~~~iP~d~~~lD~~~~~~~~~f~------~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~P~- 89 (265)
T cd06589 21 GDQDKVLEVI-DGMRENDIPLDGFVLDDDYTDGYGDFT------FDWDAGKFPN---PKSMIDELHDNGVKLVLWIDPY- 89 (265)
T ss_pred CCHHHHHHHH-HHHHHcCCCccEEEECcccccCCceee------eecChhhCCC---HHHHHHHHHHCCCEEEEEeChh-
Confidence 3456666666 77777 45568888665443321111 24453 4654 5789999999999999988664
Q ss_pred CCccchhHHhhh
Q psy8670 137 TSNQHEWFKKSL 148 (224)
Q Consensus 137 ~~~~~~w~~~~~ 148 (224)
+ -.|+.+.+
T Consensus 90 v---~~w~~~~~ 98 (265)
T cd06589 90 I---REWWAEVV 98 (265)
T ss_pred H---HHHHHHHH
Confidence 3 56666544
No 173
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=66.86 E-value=13 Score=34.41 Aligned_cols=39 Identities=10% Similarity=0.281 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.+++.+.++.++++ ||.+..|+++.+-+....-|++.+
T Consensus 281 t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl 321 (445)
T PRK14340 281 TIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATL 321 (445)
T ss_pred CHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHH
Confidence 678999999999999 999999999999998888777665
No 174
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=66.48 E-value=29 Score=30.60 Aligned_cols=62 Identities=15% Similarity=0.019 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-----CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHc--CCEEEEecC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-----ADFGYDISDYLSFEPLFGDLKDFETLKERLHAL--GIKILLDFV 133 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-----~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~--gi~vilD~v 133 (224)
+++.+.+.+ ..+.++|+++|.|-|+-+... .+..|++ ..=+++-++++++. .|-||.|+.
T Consensus 49 s~d~l~~~~-~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~------------~g~v~~air~iK~~~pdl~vi~Dvc 115 (320)
T cd04824 49 GVNRLEEFL-RPLVAKGLRSVILFGVPLKPGKDDRSGSAADDE------------DGPVIQAIKLIREEFPELLIACDVC 115 (320)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeCCCccccCCcCccccccCC------------CChHHHHHHHHHHhCCCcEEEEeee
Confidence 678899999 999999999999999942211 1111221 12344555555544 899999998
Q ss_pred CC
Q psy8670 134 PN 135 (224)
Q Consensus 134 ~n 135 (224)
+.
T Consensus 116 lc 117 (320)
T cd04824 116 LC 117 (320)
T ss_pred cc
Confidence 65
No 175
>PRK15452 putative protease; Provisional
Probab=66.39 E-value=20 Score=33.14 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCc-ccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPI-FKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLD 131 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi-~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD 131 (224)
|+++.+.. .-+.|+++|++..- |..- . ...+| +.+++++.++.||++|.+|.+=
T Consensus 11 g~~e~l~a-----Ai~~GADaVY~G~~~~~~R-~----~~~~f--------~~edl~eav~~ah~~g~kvyvt 65 (443)
T PRK15452 11 GTLKNMRY-----AFAYGADAVYAGQPRYSLR-V----RNNEF--------NHENLALGINEAHALGKKFYVV 65 (443)
T ss_pred CCHHHHHH-----HHHCCCCEEEECCCccchh-h----hccCC--------CHHHHHHHHHHHHHcCCEEEEE
Confidence 55555444 44679999999542 2110 0 01122 4589999999999999999874
No 176
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=66.18 E-value=17 Score=29.90 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=32.1
Q ss_pred eEEEEec-ccccCcCC---------CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcc
Q psy8670 42 VFYHLYP-RSFKDSNG---------DGVGDLKGMIEKLPEHLHDLGVGAVWISPIF 87 (224)
Q Consensus 42 viY~i~~-~~f~~~~~---------~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~ 87 (224)
.||+.|. .+|.+..+ +..+..-++-+.|.+.|.+.|+++++-.-+.
T Consensus 2 ~IYhTH~~Esy~p~~~~~~~~~~~~~~~~~V~~VG~~L~~~Le~~Gi~vihd~t~~ 57 (196)
T TIGR02867 2 FIYHTHSTESYLPELPGVTDPNAATHSEGNITKVGDRLAKELEEKGIGVIHDKTVH 57 (196)
T ss_pred EEEeCCCcccccCCCCCCCCcccccCCCCcHHHHHHHHHHHHHHCCCeEEEeCCcc
Confidence 3677774 55654432 2346788888888789999999999876643
No 177
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=66.14 E-value=29 Score=33.93 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCC---CCCCCCccCCCCcC-CCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPM---ADFGYDISDYLSFE-PLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~---~~~gY~~~d~~~v~-~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
+-+.+...| +.|+++|+|+|+|-.+..... ...-|-|.++...- +-|.. +. -+.+|++|++|..=+
T Consensus 332 q~~~L~~lL-drlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~~---~a--w~l~~r~~v~v~AWm 401 (671)
T PRK14582 332 QDRNIDVLI-QRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFNR---VA--WQLRTRAGVNVYAWM 401 (671)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcCH---HH--HHHHHhhCCEEEEec
Confidence 346666667 999999999999986533211 12335555554442 11221 11 222899999996433
No 178
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=66.10 E-value=19 Score=34.32 Aligned_cols=70 Identities=6% Similarity=0.056 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCc----cCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDI----SDYLSFEPLFGDLKDFETLKERLHALGIKILLD 131 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~----~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD 131 (224)
+.....+.+ +.|++.-||+|++==-+-.-....+-.. ..|.++.-+-=..+-+|++|++||+.||+.|.=
T Consensus 116 ~~~~~~~~i-~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Y 189 (559)
T PF13199_consen 116 SAEDIEAEI-DQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAY 189 (559)
T ss_dssp GHHHHHHHH-HHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CchhHHHHH-HHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehh
Confidence 456677778 9999999999987422211000000001 111112112222578999999999999999873
No 179
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=65.75 E-value=17 Score=34.49 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~ 145 (224)
++| +.|+++|++.|.|..= +.. ..-...++. --+.++..+-++.+++.|++|.+|+.++--+...+-+.
T Consensus 207 e~L-~~L~~~G~~rVslGVQ--S~~------d~VL~~inR-ght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~ 275 (522)
T TIGR01211 207 EHI-DRMLKLGATRVELGVQ--TIY------NDILERTKR-GHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDL 275 (522)
T ss_pred HHH-HHHHHcCCCEEEEECc--cCC------HHHHHHhCC-CCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHH
Confidence 456 9999999999988752 110 111112333 24678999999999999999999999997765544333
No 180
>PRK13561 putative diguanylate cyclase; Provisional
Probab=65.50 E-value=13 Score=35.59 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=55.0
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC--CCCC------CCccCCCCcCCCC----
Q psy8670 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFG------YDISDYLSFEPLF---- 108 (224)
Q Consensus 41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~g------Y~~~d~~~v~~~~---- 108 (224)
..+.|+....+ ..+.....+.+ ..|+++||.-. | =..+. .+.. .-+.|+-++|..|
T Consensus 519 ~l~lEi~E~~~-------~~~~~~~~~~~-~~l~~~G~~i~-l---ddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i 586 (651)
T PRK13561 519 TLILEVTESRR-------IDDPHAAVAIL-RPLRNAGVRVA-L---DDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGL 586 (651)
T ss_pred HEEEEEchhhh-------hcCHHHHHHHH-HHHHHCCCEEE-E---ECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcC
Confidence 44556554443 24667777778 99999999654 2 11111 1111 1357888888665
Q ss_pred -CCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 109 -GDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 109 -G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.+..-++.+++.||..|++||..-|=+
T Consensus 587 ~~~~~~v~~i~~~a~~l~i~viAegVE~ 614 (651)
T PRK13561 587 PEDDSMVAAIIMLAQSLNLQVIAEGVET 614 (651)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEecCCC
Confidence 345668999999999999999998754
No 181
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=65.03 E-value=42 Score=24.74 Aligned_cols=54 Identities=13% Similarity=0.309 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 62 LKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 62 l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
-+++..++ ..|++-|+++|+|+.-...... .+ .--..+++++.+++.- |++||.
T Consensus 51 g~~~~~~~-~~l~~~~~d~IHlssC~~~~~~-~~-----------~CP~~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRI-KKLKKNGADVIHLSSCMVKGNP-HG-----------PCPHIDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred hhHHHHHH-HHHHHCCCCEEEEcCCEecCCC-CC-----------CCCCHHHHHHHHHHHh--CCCEee
Confidence 35677777 8889999999999997765421 11 1122456665555543 988864
No 182
>PLN00197 beta-amylase; Provisional
Probab=64.75 E-value=38 Score=32.23 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcC---cccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISP---IFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~P---i~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
...-+++.++| ..||.+||++|-+-= |.|.. |=.-. ++...++|++.+++.|||+..=+-+.
T Consensus 123 l~~~~~l~~~L-~~LK~~GVdGVmvDvWWGiVE~~----~p~~Y----------dWsgY~~L~~mvr~~GLKlq~VmSFH 187 (573)
T PLN00197 123 VNRRKAMKASL-QALKSAGVEGIMMDVWWGLVERE----SPGVY----------NWGGYNELLEMAKRHGLKVQAVMSFH 187 (573)
T ss_pred ccCHHHHHHHH-HHHHHcCCCEEEEeeeeeeeccC----CCCcC----------CcHHHHHHHHHHHHcCCeEEEEEEec
Confidence 45667899999 999999999996532 22211 11112 24788999999999999997777664
Q ss_pred CCC
Q psy8670 136 HTS 138 (224)
Q Consensus 136 h~~ 138 (224)
-|+
T Consensus 188 qCG 190 (573)
T PLN00197 188 QCG 190 (573)
T ss_pred ccC
Confidence 444
No 183
>PLN02161 beta-amylase
Probab=64.58 E-value=37 Score=32.03 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEcC---cccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 58 GVGDLKGMIEKLPEHLHDLGVGAVWISP---IFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 58 ~~g~l~~~~~~l~~~l~~lG~~~i~l~P---i~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.....+.+..+| ..||.+||++|-+-= +.|.. |=.-. ++.-.++|++.+++.|||+..=+-+
T Consensus 112 ~v~~~~al~~~L-~~LK~~GVdGVmvDVWWGiVE~~----~p~~Y----------dWsgY~~l~~mvr~~GLKlq~vmSF 176 (531)
T PLN02161 112 KIKRLKALTVSL-KALKLAGVHGIAVEVWWGIVERF----SPLEF----------KWSLYEELFRLISEAGLKLHVALCF 176 (531)
T ss_pred ccCCHHHHHHHH-HHHHHcCCCEEEEEeeeeeeecC----CCCcC----------CcHHHHHHHHHHHHcCCeEEEEEEe
Confidence 356788899999 999999999996532 22211 11112 2478899999999999999777666
Q ss_pred CCC
Q psy8670 135 NHT 137 (224)
Q Consensus 135 nh~ 137 (224)
.-+
T Consensus 177 HqC 179 (531)
T PLN02161 177 HSN 179 (531)
T ss_pred ccc
Confidence 443
No 184
>PLN02635 disproportionating enzyme
Probab=64.28 E-value=12 Score=35.63 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 112 KDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 112 ~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.+++++.+.|+++||++|-|+.+-
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~ 247 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIY 247 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecc
Confidence 478889999999999999999963
No 185
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=64.11 E-value=28 Score=30.05 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 56 GDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 56 ~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
++...+.+.+.+-- ..+|+.|.+.+...+..+.. +|.||.... ++.++.|.++++..|+-|+..+
T Consensus 52 PCsvEs~E~i~~~A-~~vk~~Ga~~lRGgafKPRT------SPYsFQGlg-----e~gL~~l~~a~~~~Gl~vvtEv 116 (286)
T COG2876 52 PCSVESEEQVRETA-ESVKAAGAKALRGGAFKPRT------SPYSFQGLG-----EEGLKLLKRAADETGLPVVTEV 116 (286)
T ss_pred CcccCCHHHHHHHH-HHHHHcchhhccCCcCCCCC------CcccccccC-----HHHHHHHHHHHHHcCCeeEEEe
Confidence 44567777787777 89999999999999888765 234443333 3889999999999999998765
No 186
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=64.06 E-value=25 Score=29.74 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=51.9
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCC--------ccCCCCcCCCCCC--
Q psy8670 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYD--------ISDYLSFEPLFGD-- 110 (224)
Q Consensus 41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~--------~~d~~~v~~~~G~-- 110 (224)
.++.|+-.... ..+...+...+ ..|+++||... | =.. +.||+ +.|+-+||.+|-.
T Consensus 121 ~l~lEitE~~~-------~~~~~~~~~~l-~~L~~~G~~ia-l---DDF---GtG~ssl~~L~~l~~d~iKID~~fi~~i 185 (256)
T COG2200 121 RLVLEITESAL-------IDDLDTALALL-RQLRELGVRIA-L---DDF---GTGYSSLSYLKRLPPDILKIDRSFVRDL 185 (256)
T ss_pred eEEEEEeCchh-------hcCHHHHHHHH-HHHHHCCCeEE-E---ECC---CCCHHHHHHHhhCCCCeEEECHHHHhhc
Confidence 45666655553 23455455556 99999998543 2 111 23333 4466677777622
Q ss_pred ------HHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 111 ------LKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 111 ------~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
..-++.+++.||+.|++|+.-.|=+
T Consensus 186 ~~~~~~~~iv~~iv~la~~l~~~vvaEGVEt 216 (256)
T COG2200 186 ETDARDQAIVRAIVALAHKLGLTVVAEGVET 216 (256)
T ss_pred ccCcchHHHHHHHHHHHHHCCCEEEEeecCC
Confidence 3459999999999999999988744
No 187
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=63.87 E-value=35 Score=30.15 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCC----CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHc--CCEEEEecCC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPM----ADFGYDISDYLSFEPLFGDLKDFETLKERLHAL--GIKILLDFVP 134 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~----~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~--gi~vilD~v~ 134 (224)
+++.+.+.+ +.+.++|+++|.|-|+.+... .+..|++- | =+.+-++++++. .|-||.|+.+
T Consensus 52 s~d~l~~~v-~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~---------g---~v~~air~iK~~~p~l~vi~DVcl 118 (320)
T cd04823 52 SIDELLKEA-EEAVDLGIPAVALFPVTPPELKSEDGSEAYNPD---------N---LVCRAIRAIKEAFPELGIITDVAL 118 (320)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEecCCCcccCCcccccccCCC---------C---hHHHHHHHHHHhCCCcEEEEeeec
Confidence 678899999 999999999999999853321 11222221 1 244555555544 8999999987
Q ss_pred C
Q psy8670 135 N 135 (224)
Q Consensus 135 n 135 (224)
.
T Consensus 119 c 119 (320)
T cd04823 119 D 119 (320)
T ss_pred c
Confidence 5
No 188
>PLN02998 beta-glucosidase
Probab=63.36 E-value=31 Score=32.43 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
..+....+.+ +.+|+||+++--++=-++.-.. .|-. .+|+ ...+=.++||+++.++||+.|+-+- |- .
T Consensus 79 D~Yhry~EDi-~lmk~lG~~~YRfSIsWsRI~P-~G~g-----~vN~--~gl~~Y~~lid~L~~~GIeP~VTL~--H~-d 146 (497)
T PLN02998 79 DQYHKYKEDV-KLMADMGLEAYRFSISWSRLLP-SGRG-----PINP--KGLQYYNNLIDELITHGIQPHVTLH--HF-D 146 (497)
T ss_pred cHHHhhHHHH-HHHHHcCCCeEEeeccHHhcCc-CCCC-----CcCH--HHHHHHHHHHHHHHHcCCceEEEec--CC-C
Confidence 3567778888 9999999999888643332110 1100 1222 3355688999999999999998763 44 2
Q ss_pred cchhHHh
Q psy8670 140 QHEWFKK 146 (224)
Q Consensus 140 ~~~w~~~ 146 (224)
-..|+.+
T Consensus 147 lP~~L~~ 153 (497)
T PLN02998 147 LPQALED 153 (497)
T ss_pred CCHHHHH
Confidence 3445543
No 189
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=63.28 E-value=67 Score=24.72 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEcCcccC
Q psy8670 58 GVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS 89 (224)
Q Consensus 58 ~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~ 89 (224)
...++.+...++.-..+++|-|+|.|.-....
T Consensus 81 ~p~s~~~Ar~~~r~kAa~~gaN~Vvl~~C~~~ 112 (133)
T PRK10781 81 SPPSIPTARKRMQINASKMKANAVLLHSCEIT 112 (133)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence 34567777777745667899999998765544
No 190
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=63.27 E-value=36 Score=30.10 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHc--CCEEEEecCCC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHAL--GIKILLDFVPN 135 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~--gi~vilD~v~n 135 (224)
+++.+.+.+ ..+.++|+++|.|-|+-+. ....|- .+.+| ..-+.+-++++++. .|-||.|+.+.
T Consensus 59 sid~l~~~~-~~~~~~Gi~~v~lFgv~~~-Kd~~gs-----~A~~~----~g~v~~air~iK~~~pdl~vi~DVcLc 124 (322)
T PRK13384 59 PESALADEI-ERLYALGIRYVMPFGISHH-KDAKGS-----DTWDD----NGLLARMVRTIKAAVPEMMVIPDICFC 124 (322)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEeCCCCC-CCCCcc-----cccCC----CChHHHHHHHHHHHCCCeEEEeeeecc
Confidence 678888999 9999999999999998332 111110 01111 12344555555554 89999999865
No 191
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=63.13 E-value=19 Score=30.73 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTSNQH 141 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~ 141 (224)
.++++++++.||+.||.+|+|+ |...+-
T Consensus 146 ~~~l~~li~~a~~lGl~~lvev---h~~~E~ 173 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEV---HDEEEL 173 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEe---CCHHHH
Confidence 5799999999999999999999 766543
No 192
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=63.05 E-value=26 Score=29.51 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+.+.+ +.++++|+++|.|.+-.. +.| .+.+ +.+++++|.+++.++||+|..
T Consensus 15 l~~~l-~~~~~~G~~~vEl~~~~~-----~~~--------~~~~-~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 15 IEHAF-RDASELGYDGIEIWGGRP-----HAF--------APDL-KAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred HHHHH-HHHHHcCCCEEEEccCCc-----ccc--------cccc-CchHHHHHHHHHHHcCCeEEE
Confidence 66777 999999999999853111 111 1111 345789999999999999854
No 193
>PLN02705 beta-amylase
Probab=62.94 E-value=37 Score=32.79 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=52.3
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcC---cccCCCCCCCCCccCCCCcCCCCCCHHHHHHH
Q psy8670 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISP---IFKSPMADFGYDISDYLSFEPLFGDLKDFETL 117 (224)
Q Consensus 41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~P---i~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~l 117 (224)
..+|-..|-...+ +......-+++.++| ..||.+||++|-+-= |.|.. |=.-. ++...++|
T Consensus 247 VpVyVMLPLd~V~-~~~~l~~~~al~a~L-~aLK~aGVdGVmvDVWWGiVE~~----~P~~Y----------dWsgY~~L 310 (681)
T PLN02705 247 VPVYVMLAVGIIN-NFCQLVDPEGVRQEL-SHMKSLNVDGVVVDCWWGIVEGW----NPQKY----------VWSGYREL 310 (681)
T ss_pred eeEEEEeecceec-cCCcccCHHHHHHHH-HHHHHcCCCEEEEeeeeeEeecC----CCCcC----------CcHHHHHH
Confidence 3455555433322 222356678899999 999999999996532 12211 11112 24788999
Q ss_pred HHHHHHcCCEEEEecCCCCCC
Q psy8670 118 KERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 118 v~~~h~~gi~vilD~v~nh~~ 138 (224)
++.+++.|||+..=+-+.-|+
T Consensus 311 ~~mvr~~GLKlqvVmSFHqCG 331 (681)
T PLN02705 311 FNIIREFKLKLQVVMAFHEYG 331 (681)
T ss_pred HHHHHHcCCeEEEEEEeeccC
Confidence 999999999987766664444
No 194
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=61.97 E-value=26 Score=31.26 Aligned_cols=70 Identities=20% Similarity=0.201 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHHh
Q psy8670 68 KLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFKK 146 (224)
Q Consensus 68 ~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~~ 146 (224)
.+ ..++++|++.|.+.- ++. +..-...++ +-.+.++..+-++.+++.|++ |-+|+.++-.+.+..=+.+
T Consensus 101 ~l-~~l~~~G~~rvsiGv--qS~------~d~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~ 170 (374)
T PRK05799 101 KL-KILKSMGVNRLSIGL--QAW------QNSLLKYLG-RIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKE 170 (374)
T ss_pred HH-HHHHHcCCCEEEEEC--ccC------CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHH
Confidence 44 888888888887664 211 111111222 233678888889999999986 6689888876655444443
Q ss_pred h
Q psy8670 147 S 147 (224)
Q Consensus 147 ~ 147 (224)
.
T Consensus 171 ~ 171 (374)
T PRK05799 171 T 171 (374)
T ss_pred H
Confidence 3
No 195
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=61.81 E-value=30 Score=27.33 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
.||.-+.+.. +-|.++|+..-- .|-+..-|++.+.+.+++++++|++||+=.
T Consensus 13 SD~~~mk~Aa-~~L~~fgi~ye~--------------------~VvSAHRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 13 SDWDTMKKAA-EILEEFGVPYEV--------------------RVVSAHRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred chHHHHHHHH-HHHHHcCCCeEE--------------------EEEeccCCHHHHHHHHHHHHHCCCeEEEec
Confidence 4677777777 999999886431 222234678999999999999999999754
No 196
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=61.79 E-value=1.9 Score=42.12 Aligned_cols=19 Identities=47% Similarity=0.760 Sum_probs=14.8
Q ss_pred chhcccCCCcceeeccccc
Q psy8670 160 LARLHDLGVGAVWISPIFK 178 (224)
Q Consensus 160 w~~~~~lG~~~~w~~p~f~ 178 (224)
.++++++|+..+-+.|++.
T Consensus 206 i~yLk~LGvtaVeLLPV~~ 224 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFD 224 (697)
T ss_pred HHHHHHhCCceEEEecceE
Confidence 4667888998888888863
No 197
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=61.69 E-value=22 Score=32.87 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcC-CEEEEecCCCCCCccchhHH
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALG-IKILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~g-i~vilD~v~nh~~~~~~w~~ 145 (224)
+++ ..++++|||.|.+.- .... ..-...++ +--+.++..+.++.+++.| ..|.+|++++.-+..-.=+.
T Consensus 164 e~l-~~l~~aGvnRiSiGV-QSf~-------d~vLk~lg-R~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~ 233 (449)
T PRK09058 164 EKA-DAALDAGANRFSIGV-QSFN-------TQVRRRAG-RKDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQ 233 (449)
T ss_pred HHH-HHHHHcCCCEEEecC-CcCC-------HHHHHHhC-CCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHH
Confidence 345 777888888876542 2111 00111122 1235788889999999999 88999999887776554444
Q ss_pred hhh
Q psy8670 146 KSL 148 (224)
Q Consensus 146 ~~~ 148 (224)
+.+
T Consensus 234 ~~l 236 (449)
T PRK09058 234 QDL 236 (449)
T ss_pred HHH
Confidence 443
No 198
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=61.44 E-value=12 Score=34.54 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.+++.+.++.+++. |+.+-.|+++.+-+...+=|++.+
T Consensus 291 t~e~~~~~v~~ir~~~pgi~i~~d~IvGfPgET~edf~~Tl 331 (455)
T PRK14335 291 TREHYLSLVGKLKASIPNVALSTDILIGFPGETEEDFEQTL 331 (455)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHH
Confidence 578999999999999 999999999999988877777665
No 199
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=61.07 E-value=16 Score=34.31 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 112 KDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 112 ~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
++++++.+.|+++||++|-|+.+.
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpig 221 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIY 221 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecc
Confidence 478889999999999999999984
No 200
>PRK12928 lipoyl synthase; Provisional
Probab=60.35 E-value=42 Score=29.17 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
-+.+++.+.+ ..|+++|++.|.+.+..+-+. ..+.+ .+|=++++|..+-+.+.+.|.+-+.=-++
T Consensus 216 ET~ed~~etl-~~Lrel~~d~v~i~~Yl~p~~--~~~~v-------~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 216 ETEDEVIETL-RDLRAVGCDRLTIGQYLRPSL--AHLPV-------QRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred CCHHHHHHHH-HHHHhcCCCEEEEEcCCCCCc--cCCce-------eeccCHHHHHHHHHHHHHcCCceeEecCc
Confidence 4778888888 999999999998887544321 11222 34678999999999999999876654433
No 201
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=60.17 E-value=26 Score=29.68 Aligned_cols=52 Identities=19% Similarity=0.049 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vi 129 (224)
+.+.+ +.++++|+++|.|.+--. +. .+.+.--+.++++++.+.++++||+|.
T Consensus 23 ~~e~~-~~~~~~G~~~iEl~~~~~-----~~-------~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 23 WLEKL-AIAKTAGFDFVEMSVDES-----DE-------RLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHH-HHHHHcCCCeEEEecCcc-----cc-------chhccCCCHHHHHHHHHHHHHcCCcee
Confidence 66677 888999999999953210 10 011111246789999999999999984
No 202
>PRK10060 RNase II stability modulator; Provisional
Probab=60.04 E-value=24 Score=34.15 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCC--------CccCCCCcCCCC--------CCHHHHHHHHHHHHH
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY--------DISDYLSFEPLF--------GDLKDFETLKERLHA 123 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY--------~~~d~~~v~~~~--------G~~~~~~~lv~~~h~ 123 (224)
.+...+.+.+ ..|+++||... |- ..+ .|| -+.|+-++|..| ....-++.+++.||+
T Consensus 538 ~~~~~~~~~l-~~L~~~G~~ia-lD---dfG---tg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~ 609 (663)
T PRK10060 538 ENEELALSVI-QQFSQLGAQVH-LD---DFG---TGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQA 609 (663)
T ss_pred cCHHHHHHHH-HHHHHCCCEEE-EE---CCC---CchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHH
Confidence 4566677777 99999999544 22 111 222 256777888655 234668999999999
Q ss_pred cCCEEEEecCCC
Q psy8670 124 LGIKILLDFVPN 135 (224)
Q Consensus 124 ~gi~vilD~v~n 135 (224)
.|++||..-|=+
T Consensus 610 lg~~viAeGVEt 621 (663)
T PRK10060 610 LNLQVIAEGVET 621 (663)
T ss_pred CCCcEEEecCCC
Confidence 999999998754
No 203
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=59.36 E-value=22 Score=33.20 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhh
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~ 147 (224)
.+.++..+.++.++++||.+..+++++--+...+=+.+.
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t 358 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEET 358 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHH
Confidence 367889999999999999999999988766555444444
No 204
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=59.31 E-value=36 Score=28.82 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcC
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISP 85 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~P 85 (224)
..+.+.+ +.++++|++.|.+..
T Consensus 10 ~~l~~~l-~~a~~~G~d~vEl~~ 31 (279)
T cd00019 10 FGLENAL-KRAKEIGFDTVAMFL 31 (279)
T ss_pred ccHHHHH-HHHHHcCCCEEEEEc
Confidence 4467788 999999999998864
No 205
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=59.09 E-value=80 Score=26.87 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=48.1
Q ss_pred EEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHH---HHHHHH
Q psy8670 43 FYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKD---FETLKE 119 (224)
Q Consensus 43 iY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~---~~~lv~ 119 (224)
|..+.|+||+++.. .-+.+++.++. ....+.|.+.|=+......+ |.. .....+| ++.+++
T Consensus 5 ilN~tpdSF~dg~~--~~~~~~~~~~a-~~~~~~GA~iIDIG~~st~p----~~~---------~i~~~~E~~rl~~~v~ 68 (257)
T TIGR01496 5 IVNVTPDSFSDGGR--FLSVDKAVAHA-ERMLEEGADIIDVGGESTRP----GAD---------RVSPEEELNRVVPVIK 68 (257)
T ss_pred EEeCCCCCCCCCCC--CCCHHHHHHHH-HHHHHCCCCEEEECCCCCCC----CCC---------CCCHHHHHHHHHHHHH
Confidence 45667999987421 13557777877 77888999999885432222 101 1122345 777778
Q ss_pred HHHHc-CCEEEEec
Q psy8670 120 RLHAL-GIKILLDF 132 (224)
Q Consensus 120 ~~h~~-gi~vilD~ 132 (224)
++++. ++.|.+|-
T Consensus 69 ~~~~~~~~plsiDT 82 (257)
T TIGR01496 69 ALRDQPDVPISVDT 82 (257)
T ss_pred HHHhcCCCeEEEeC
Confidence 88887 88888875
No 206
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=59.09 E-value=29 Score=31.49 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHh
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~ 146 (224)
++| ..|+++|||.|.+..= +. +..-...+. +.-+.++..+.++.+++.+..|-+|++++.-+..-+=+++
T Consensus 112 e~l-~~l~~~GvnRiSiGvQ--S~------~d~~L~~lg-R~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt~e~~~~ 181 (390)
T PRK06582 112 EKF-KAFKLAGINRVSIGVQ--SL------KEDDLKKLG-RTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQTLKDWQE 181 (390)
T ss_pred HHH-HHHHHCCCCEEEEECC--cC------CHHHHHHcC-CCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCCHHHHHH
Confidence 567 8999999999987641 11 111111122 2345788888889999888999999999988766543444
Q ss_pred h
Q psy8670 147 S 147 (224)
Q Consensus 147 ~ 147 (224)
.
T Consensus 182 ~ 182 (390)
T PRK06582 182 E 182 (390)
T ss_pred H
Confidence 3
No 207
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=58.93 E-value=17 Score=33.53 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhhc
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSLA 149 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~~ 149 (224)
+.+++.++++.+++. |+.+-.|+.+.+-+...+-|.+.++
T Consensus 288 t~e~~~~~i~~lr~~~p~i~i~~d~IvGfPgET~edf~~tl~ 329 (448)
T PRK14333 288 THEKYRRIIDKIREYMPDASISADAIVGFPGETEAQFENTLK 329 (448)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeeEEEECCCCCHHHHHHHHH
Confidence 688999999999999 8999999999999988888876653
No 208
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=58.88 E-value=29 Score=31.19 Aligned_cols=65 Identities=8% Similarity=0.091 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQH 141 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~ 141 (224)
++| ..|+++||+.|.+.- ++. +..-...++. --+.++..+.++.+++.++.|-+|+.++--+..-
T Consensus 105 e~L-~~l~~~GvnrislGv--QS~------~d~vL~~l~R-~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt~ 169 (380)
T PRK09057 105 GRF-RGYRAAGVNRVSLGV--QAL------NDADLRFLGR-LHSVAEALAAIDLAREIFPRVSFDLIYARPGQTL 169 (380)
T ss_pred HHH-HHHHHcCCCEEEEec--ccC------CHHHHHHcCC-CCCHHHHHHHHHHHHHhCccEEEEeecCCCCCCH
Confidence 567 888999999997763 111 1111112222 2467888889999999999999999998766544
No 209
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=58.44 E-value=19 Score=33.05 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.+++.++++.++++ |+.+-.|+++.+-+....=|++.+
T Consensus 273 ~~~~~~~~i~~lr~~~~~i~i~~d~IvGfPgET~edf~~tl 313 (434)
T PRK14330 273 TREEYLELIEKIRSKVPDASISSDIIVGFPTETEEDFMETV 313 (434)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHH
Confidence 578999999999997 899999999999888777666555
No 210
>PRK11059 regulatory protein CsrD; Provisional
Probab=57.84 E-value=36 Score=32.71 Aligned_cols=84 Identities=10% Similarity=0.114 Sum_probs=55.9
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC--CCC---CCCccCCCCcCCCCC-----
Q psy8670 40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--ADF---GYDISDYLSFEPLFG----- 109 (224)
Q Consensus 40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~---gY~~~d~~~v~~~~G----- 109 (224)
+..+.|+..... ......+.+.+ ..|+++||... +- ..+. .+. ..-+.||-++|+.+-
T Consensus 517 ~~l~~Ei~E~~~-------~~~~~~~~~~l-~~L~~~G~~ia-id---dfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~ 584 (640)
T PRK11059 517 KRLIFELAEADV-------CQHISRLRPVL-RMLRGLGCRLA-VD---QAGLTVVSTSYIKELNVELIKLHPSLVRNIHK 584 (640)
T ss_pred ceEEEEEechhh-------hcCHHHHHHHH-HHHHHCCCEEE-EE---CCCCCcccHHHHHhCCCCEEEECHHHHhhhhc
Confidence 456777766554 24567777888 99999999654 22 2211 111 122567778777652
Q ss_pred ---CHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 110 ---DLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 110 ---~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
+..-++.+++.||..|++||..-|=+
T Consensus 585 ~~~~~~~v~sli~~a~~~~i~viAegVEt 613 (640)
T PRK11059 585 RTENQLFVRSLVGACAGTETQVFATGVES 613 (640)
T ss_pred CchhHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 22348999999999999999998754
No 211
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=57.78 E-value=29 Score=31.66 Aligned_cols=75 Identities=24% Similarity=0.525 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHcCC--CeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 62 LKGMIEKLPEHLHDLGV--GAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 62 l~~~~~~l~~~l~~lG~--~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
-+.+.+-+ +.+++.|+ +++++-.-+... |. +| ..|+ +|- +.++|++.+|++|+++++-+.+ ++.
T Consensus 42 ~~~v~~~i-~~~~~~~iP~d~~~iD~~~~~~-----~~--~f-~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~ 108 (441)
T PF01055_consen 42 QDEVREVI-DRYRSNGIPLDVIWIDDDYQDG-----YG--DF-TWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FVS 108 (441)
T ss_dssp HHHHHHHH-HHHHHTT--EEEEEE-GGGSBT-----TB--TT--B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EEE
T ss_pred HHHHHHHH-HHHHHcCCCccceecccccccc-----cc--cc-cccccccc---chHHHHHhHhhCCcEEEEEeec-ccC
Confidence 45555555 77777554 566654433322 12 33 5554 344 7788999999999999998887 466
Q ss_pred ccch---hHHhhhc
Q psy8670 139 NQHE---WFKKSLA 149 (224)
Q Consensus 139 ~~~~---w~~~~~~ 149 (224)
.++. .+++..+
T Consensus 109 ~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 109 NDSPDYENYDEAKE 122 (441)
T ss_dssp TTTTB-HHHHHHHH
T ss_pred CCCCcchhhhhHhh
Confidence 5555 6665553
No 212
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=57.77 E-value=27 Score=32.61 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
..+....+.+ +-+++||+++.-++=-+..-.. .|.. ..+ .-...+-..+++++++++||+.|+.+.
T Consensus 68 D~Yhry~eDi-~l~~~lG~~~yR~si~WsRi~P-~g~~----~~~--n~~~~~~Y~~~i~~l~~~gi~p~VtL~ 133 (474)
T PRK09852 68 DFYHRYKEDI-ALMAEMGFKVFRTSIAWSRLFP-QGDE----LTP--NQQGIAFYRSVFEECKKYGIEPLVTLC 133 (474)
T ss_pred chhhhhHHHH-HHHHHcCCCeEEeeceeeeeee-CCCC----CCC--CHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 3477778888 9999999999988754433111 1100 011 113356688999999999999999874
No 213
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=57.60 E-value=2.1 Score=42.96 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.2
Q ss_pred HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670 194 IKILLDFVPNHTSNQHEWFKKSLA 217 (224)
Q Consensus 194 i~ii~d~v~nh~~~~~~W~~~~~~ 217 (224)
|+||||.|+||++.++++.+...+
T Consensus 418 i~VIlDVVyNHt~~~g~~~~s~ld 441 (898)
T TIGR02103 418 LNVVMDVVYNHTNASGPNDRSVLD 441 (898)
T ss_pred CEEEEEeecccccccCccCccccc
Confidence 689999999999998876554443
No 214
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=57.32 E-value=29 Score=29.06 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~ 127 (224)
+...+ ..++++|.+.|-+.|+-- +-..+|++++.++|.++|+.
T Consensus 137 vetAi-aml~dmG~~SiKffPM~G-------------------l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 137 IETAI-AMLKDMGGSSVKFFPMGG-------------------LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred HHHHH-HHHHHcCCCeeeEeecCC-------------------cccHHHHHHHHHHHHHcCCc
Confidence 44556 889999999999988632 23468999999999999886
No 215
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=56.54 E-value=48 Score=25.95 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHH---cCCEEEEecCCCCC
Q psy8670 62 LKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHA---LGIKILLDFVPNHT 137 (224)
Q Consensus 62 l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~---~gi~vilD~v~nh~ 137 (224)
.+...+.. ++.+++|+++|.+.|.+-.... ++.+++.+.++++.+ .++.+++...+.++
T Consensus 64 ~~~~~~~a-~~a~~~Gad~i~v~~~~~~~~~----------------~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 64 TEVKVAEV-EEAIDLGADEIDVVINIGSLKE----------------GDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEeccHHHHhC----------------CCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 67788888 9999999999999865422110 123444444444443 59999999888776
No 216
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=56.41 E-value=49 Score=28.15 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
.++..+++++|+++|++.++=+.++.
T Consensus 126 ~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 126 LEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 47889999999999999987777764
No 217
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=56.37 E-value=48 Score=28.98 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCC-eEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVG-AVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~-~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
..+.++-.+.+ ..|++.|+. +|.+.||.+.. + .+++.+++.++...|.+.+.+..+.-.
T Consensus 165 apsp~~Ri~al-~~l~eaGi~~~v~v~PIiP~~------------------~-d~e~e~~l~~~~~ag~~~v~~~~l~~~ 224 (297)
T COG1533 165 APSPEERLEAL-KELSEAGIPVGLFVAPIIPGL------------------N-DEELERILEAAAEAGARVVVYGTLRLR 224 (297)
T ss_pred CcCHHHHHHHH-HHHHHCCCeEEEEEecccCCC------------------C-hHHHHHHHHHHHHcCCCeeEeeeeecc
Confidence 45667777777 899999996 46778998753 1 279999999999999999999888777
Q ss_pred CccchhHHhhhcC
Q psy8670 138 SNQHEWFKKSLAN 150 (224)
Q Consensus 138 ~~~~~w~~~~~~~ 150 (224)
...+..++..+..
T Consensus 225 ~~~~~~~~~~~~~ 237 (297)
T COG1533 225 LDILRRFKEYLKR 237 (297)
T ss_pred HHHHHHHHHHHHH
Confidence 7778888777644
No 218
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=56.28 E-value=11 Score=34.30 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=30.3
Q ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 99 SDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 99 ~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
..+..+....|+..+++++++.||++|..|++|.+
T Consensus 166 vais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 166 VALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred EEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 34445667789999999999999999999999986
No 219
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=56.23 E-value=34 Score=29.54 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.|..++++++.+.||++|+-+++|-+..
T Consensus 161 tG~~~~~~~i~~~~~~~~~~l~vD~a~~ 188 (345)
T cd06450 161 TGAIDPLEEIADLAEKYDLWLHVDAAYG 188 (345)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEechhh
Confidence 3556788999999999999999998854
No 220
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=55.96 E-value=21 Score=26.13 Aligned_cols=71 Identities=21% Similarity=0.156 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
|.-..+...+...++.+|.....+............-...|..-+=..-|...+..++++.|+++|+++++
T Consensus 22 g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 22 GSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred CchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 34445555554677888886665543322110000011223222233446678899999999999999854
No 221
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=55.73 E-value=53 Score=29.08 Aligned_cols=140 Identities=15% Similarity=0.131 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCc-ccCCCCCCCCCccCCCCcCCCCCCHHHH----HHHHHHHHHcCCEEEEecCCCCC
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPI-FKSPMADFGYDISDYLSFEPLFGDLKDF----ETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi-~~~~~~~~gY~~~d~~~v~~~~G~~~~~----~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
+-.++-. ..++++||+-|+|==| |+..... .-..|..-+..-.-.+.+ +..-+++|+.|..|=+|+--.-+
T Consensus 124 ~Y~i~IA-~Eaa~~GFdEIqfDYIRFP~~~~~---~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~ 199 (316)
T PF13200_consen 124 DYNIDIA-KEAAKLGFDEIQFDYIRFPDEGRL---SGLDYSENDTEESRVDAITDFLAYAREELHPYGVPVSADVFGYVA 199 (316)
T ss_pred HHHHHHH-HHHHHcCCCEEEeeeeecCCCCcc---cccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEeccccc
Confidence 3344434 7788999999998533 2221000 111221111111122333 44455566789999999864433
Q ss_pred Cc-cchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH-------HHHHHhhccc--CCCC
Q psy8670 138 SN-QHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR-------IKILLDFVPN--HTSN 207 (224)
Q Consensus 138 ~~-~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~-------i~ii~d~v~n--h~~~ 207 (224)
.. +..-.-+....-+++.|+- .+|=+..-|.. ..+++++||-.= ++.....+.+ +...
T Consensus 200 ~~~~~~~iGQ~~~~~a~~vD~I-----sPMiYPSh~~~-------g~~g~~~P~~~PY~~v~~~~~~~~~~~~~~~~~~~ 267 (316)
T PF13200_consen 200 WSPDDMGIGQDFEKIAEYVDYI-----SPMIYPSHYGP-------GFFGIDKPDLEPYEIVYRSLKRAKERLRGLEGPAI 267 (316)
T ss_pred ccCCCCCcCCCHHHHhhhCCEE-----EecccccccCc-------ccCCCCCcccChHHHHHHHHHHHHHHhhcCCCCCe
Confidence 32 2222222223334555554 23322222222 125555555321 2222222332 2778
Q ss_pred CcHHHHHhhcC
Q psy8670 208 QHEWFKKSLAN 218 (224)
Q Consensus 208 ~~~W~~~~~~~ 218 (224)
.+||+|++-+.
T Consensus 268 ~RPWlQ~Ft~~ 278 (316)
T PF13200_consen 268 IRPWLQDFTAS 278 (316)
T ss_pred Eeccccccccc
Confidence 99999998876
No 222
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=55.41 E-value=27 Score=28.59 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
++-....+.+ +.+.+.|+++|.+.|..+. .+..++++|.++||.|++
T Consensus 39 ~d~~~q~~~i-~~~i~~~~d~Iiv~~~~~~-----------------------~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 39 NDPEEQIEQI-EQAISQGVDGIIVSPVDPD-----------------------SLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTHHHHHHHH-HHHHHTTESEEEEESSSTT-----------------------TTHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHH-HHHHHhcCCEEEecCCCHH-----------------------HHHHHHHHHhhcCceEEE
Confidence 4556677777 8888889999988886532 345778999999999987
No 223
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=55.30 E-value=20 Score=35.44 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCCcc
Q psy8670 112 KDFETLKERLHALGIKILLDFVPNHTSNQ 140 (224)
Q Consensus 112 ~~~~~lv~~~h~~gi~vilD~v~nh~~~~ 140 (224)
.+++++.+.|+++||+++-|+.+. ++.+
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg-Va~d 301 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG-VDKA 301 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCC
Confidence 478888899999999999999985 4433
No 224
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=55.29 E-value=59 Score=28.67 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHc--CCEEEEecCCC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHAL--GIKILLDFVPN 135 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~--gi~vilD~v~n 135 (224)
+++.+.+.+ ..+.++|+++|.|-|+-+. ....|- .+.||. | =+++-++++++. .|-||.|+.+.
T Consensus 49 s~d~l~~~~-~~~~~~Gi~~v~LFgv~~~-Kd~~gs-----~A~~~~-g---~v~~air~iK~~~p~l~vi~DvcLc 114 (314)
T cd00384 49 SVDSLVEEA-EELADLGIRAVILFGIPEH-KDEIGS-----EAYDPD-G---IVQRAIRAIKEAVPELVVITDVCLC 114 (314)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEECCCCC-CCCCcc-----cccCCC-C---hHHHHHHHHHHhCCCcEEEEeeecc
Confidence 678899999 9999999999999999322 111110 122221 2 244445555443 78999999875
No 225
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=55.25 E-value=31 Score=26.99 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=35.4
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
--++.||..+..+. .|+.-++...-..+.+.++++.++++|.++++|.....
T Consensus 44 ~~l~~LG~~~~~~~--------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~ 95 (196)
T cd00287 44 VALARLGVSVTLVG--------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPRA 95 (196)
T ss_pred HHHHHCCCcEEEEE--------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCccc
Confidence 44678899887766 22222222111147889999999999999999998653
No 226
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=55.05 E-value=35 Score=30.74 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=38.5
Q ss_pred CCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670 77 GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144 (224)
Q Consensus 77 G~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~ 144 (224)
.+.+|.+-|++..+ |.-+ -+.+.++++++.|+++|+-+|+|=|....+....++
T Consensus 183 ~~aaviiEPv~~~g----g~~~----------~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~ 236 (406)
T PRK12381 183 QTCAVIVEPIQGEG----GVIP----------ADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY 236 (406)
T ss_pred CeeEEEEeCCcCCC----CCcC----------CCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh
Confidence 46688888876543 1111 146789999999999999999999976555555554
No 227
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=55.01 E-value=9.8 Score=30.12 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vi 129 (224)
+.++++|++.|.+.+........ . .++++++.+.+.++||+|.
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~----------~------~~~~~~~~~~~~~~gl~i~ 44 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDE----------K------DDEAEELRRLLEDYGLKIA 44 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTH----------H------HHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHcCCCEEEEecCCCccccc----------c------hHHHHHHHHHHHHcCCeEE
Confidence 67899999999998865433110 0 6789999999999999953
No 228
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=54.45 E-value=12 Score=34.93 Aligned_cols=45 Identities=29% Similarity=0.445 Sum_probs=31.3
Q ss_pred cCCCCcCCCC----CC----HHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670 99 SDYLSFEPLF----GD----LKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 99 ~d~~~v~~~~----G~----~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~ 145 (224)
.|-.+||.+| |+ .--+.++|+-||..||++|..-|= |.++-.|++
T Consensus 437 VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVE--teeQ~~~LR 489 (524)
T COG4943 437 VDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVE--TEEQVDWLR 489 (524)
T ss_pred ccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeeccc--HHHHHHHHH
Confidence 3444556554 33 336889999999999999998873 455555666
No 229
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=54.25 E-value=36 Score=29.61 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhh
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~ 147 (224)
+.+++.+.++.+++.|++|..|+.++--+...+-+.+.
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t 198 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMET 198 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHH
Confidence 57899999999999999999999998766655444433
No 230
>PRK08444 hypothetical protein; Provisional
Probab=54.09 E-value=38 Score=30.35 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=32.4
Q ss_pred CcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchh
Q psy8670 103 SFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEW 143 (224)
Q Consensus 103 ~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w 143 (224)
.|-|.=.+.++..++++.||+.||++---+.+.|.-.....
T Consensus 180 ~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edr 220 (353)
T PRK08444 180 KICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHR 220 (353)
T ss_pred hhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHH
Confidence 44555567799999999999999999888888888543333
No 231
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=54.01 E-value=80 Score=28.26 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
.|+++.+...+ +.|+++|++.-- .... .+++ .+| +.+++++.++.||++|.++.+=+-..-..
T Consensus 13 ag~l~~l~~ai-----~~GADaVY~G~~-~~~~--R~~a-~nf--------s~~~l~e~i~~ah~~gkk~~V~~N~~~~~ 75 (347)
T COG0826 13 AGNLEDLKAAI-----AAGADAVYIGEK-EFGL--RRRA-LNF--------SVEDLAEAVELAHSAGKKVYVAVNTLLHN 75 (347)
T ss_pred CCCHHHHHHHH-----HcCCCEEEeCCc-cccc--cccc-ccC--------CHHHHHHHHHHHHHcCCeEEEEecccccc
Confidence 35555554444 568999999743 2211 2222 232 46789999999999999998766554444
Q ss_pred ccch
Q psy8670 139 NQHE 142 (224)
Q Consensus 139 ~~~~ 142 (224)
.+.+
T Consensus 76 ~~~~ 79 (347)
T COG0826 76 DELE 79 (347)
T ss_pred chhh
Confidence 4333
No 232
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=53.88 E-value=27 Score=31.82 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHcC--CEEEEecCCCCCCccchhHHhhh
Q psy8670 109 GDLKDFETLKERLHALG--IKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~g--i~vilD~v~nh~~~~~~w~~~~~ 148 (224)
-+.+++.++++.++++| +.+..|+++..-+...+-|.+.+
T Consensus 271 ~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl 312 (429)
T TIGR00089 271 YTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETL 312 (429)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHH
Confidence 36789999999999998 99999999998888877777665
No 233
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=53.68 E-value=71 Score=28.13 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~ 144 (224)
+.+.+ .....-.+-+|++-|+.... |..+. +.+=+++|.+.|+++|+-+|+|=|..-.++..++|
T Consensus 166 ~~~~~-~~~~~~~iaavivEPi~g~~----G~~~~----------~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~ 230 (339)
T PF00202_consen 166 LEELI-AALNADEIAAVIVEPIQGEG----GMIPP----------PPEYLRELRELCREHGILLIADEVQTGFGRTGKFF 230 (339)
T ss_dssp HHHHH-HHHHGGGEEEEEEESSBTTT----TSBEE-----------TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSS
T ss_pred HHHHH-HhhcCCcEEEEEEecccccc----Ccccc----------ccchhhehcccccccccceecccccccccccCCcc
Confidence 33334 44555568899999976542 21111 13568999999999999999999998777766777
Q ss_pred HhhhcCCCCccccccchhcccCC
Q psy8670 145 KKSLANIPPYKCASLLARLHDLG 167 (224)
Q Consensus 145 ~~~~~~~~~~~~~f~w~~~~~lG 167 (224)
-....+.. +|...+.+.-..|
T Consensus 231 a~~~~gv~--PDiv~~gK~l~gG 251 (339)
T PF00202_consen 231 ASEHYGVD--PDIVTFGKGLGGG 251 (339)
T ss_dssp GHHHHTSS--SSEEEEEGGGGTT
T ss_pred ceeccccc--Ccccccccchhhh
Confidence 54444433 4777665443333
No 234
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=53.54 E-value=28 Score=32.11 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCC-CCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG-YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~g-Y~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
.+....+.+ +.+|+||+++.-++=-+..-.. .| -. .+|+ -+.+=.++|++++.++||+.|+.+ |=-.
T Consensus 56 ~y~~y~eDi-~l~~~lg~~~yRfsi~W~Ri~P-~g~~g-----~~n~--~~~~~Y~~~i~~l~~~gi~P~vtL---~H~~ 123 (455)
T PF00232_consen 56 HYHRYKEDI-ALMKELGVNAYRFSISWSRIFP-DGFEG-----KVNE--EGLDFYRDLIDELLENGIEPIVTL---YHFD 123 (455)
T ss_dssp HHHHHHHHH-HHHHHHT-SEEEEE--HHHHST-TSSSS-----SS-H--HHHHHHHHHHHHHHHTT-EEEEEE---ESS-
T ss_pred chhhhhHHH-HHHHhhccceeeeecchhheee-ccccc-----ccCH--hHhhhhHHHHHHHHhhccceeeee---eecc
Confidence 366677788 9999999999988754332100 00 00 1111 224557899999999999999987 3344
Q ss_pred cchhHHh
Q psy8670 140 QHEWFKK 146 (224)
Q Consensus 140 ~~~w~~~ 146 (224)
-..|+.+
T Consensus 124 ~P~~l~~ 130 (455)
T PF00232_consen 124 LPLWLED 130 (455)
T ss_dssp -BHHHHH
T ss_pred cccceee
Confidence 4566664
No 235
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=53.39 E-value=94 Score=26.04 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCCeEEEcCc
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPI 86 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi 86 (224)
+...+ +.+.++|++.+.|...
T Consensus 12 ~~~~~-~~~~~~G~~~vel~~~ 32 (273)
T smart00518 12 LYKAF-IEAVDIGARSFQLFLG 32 (273)
T ss_pred HhHHH-HHHHHcCCCEEEEECC
Confidence 55677 9999999999999643
No 236
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=53.29 E-value=33 Score=32.07 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
..+....+.+ +.+|+||+++--++=-++.-.. .|.. -.+ .-...+=..+||++++++||+.|+.+.
T Consensus 66 D~Yhry~EDI-~Lm~elG~~~yRfSIsWsRI~P-~G~~----~~~--N~~gl~~Y~~lid~l~~~GI~P~vTL~ 131 (477)
T PRK15014 66 DFYGHYKEDI-KLFAEMGFKCFRTSIAWTRIFP-KGDE----AQP--NEEGLKFYDDMFDELLKYNIEPVITLS 131 (477)
T ss_pred CcccccHHHH-HHHHHcCCCEEEecccceeecc-CCCC----CCC--CHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 3466778888 9999999999988643332110 1100 011 113356688999999999999999873
No 237
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=53.29 E-value=16 Score=34.20 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCCcc--chhHH
Q psy8670 112 KDFETLKERLHALGIKILLDFVPNHTSNQ--HEWFK 145 (224)
Q Consensus 112 ~~~~~lv~~~h~~gi~vilD~v~nh~~~~--~~w~~ 145 (224)
++++++.+.|+++||++|-|+.+- ++.+ ..|..
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig-v~~dsaDvW~~ 226 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG-VSPDSADVWAN 226 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS---SSSHHHHH-
T ss_pred HHHHHHHHHHHHCCCEEEEeccce-ECCCcHHHHhC
Confidence 478899999999999999999974 4433 24544
No 238
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=53.27 E-value=46 Score=27.98 Aligned_cols=25 Identities=16% Similarity=0.450 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 112 KDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 112 ~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
|++.++++.++++|++.++=+.++-
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 6899999999999999998888764
No 239
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=53.23 E-value=32 Score=30.43 Aligned_cols=63 Identities=27% Similarity=0.354 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCeEEEcCcccCCCCCCC---CCccCCCC--cCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 66 IEKLPEHLHDLGVGAVWISPIFKSPMADFG---YDISDYLS--FEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~g---Y~~~d~~~--v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
.+++++.+++-|+|++-+ ..- .+.| |....-.. +...-....++++|++++|++||.+|.=+|
T Consensus 15 ~~~~~~~i~~t~lNavVI----DvK-dd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv 82 (316)
T PF13200_consen 15 LDKLLDLIKRTELNAVVI----DVK-DDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIV 82 (316)
T ss_pred HHHHHHHHHhcCCceEEE----EEe-cCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 344449999999999954 221 1222 22211101 111111246899999999999999998775
No 240
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=52.33 E-value=68 Score=28.55 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=55.8
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCC---CcCCCCCCHHHHHHH
Q psy8670 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYL---SFEPLFGDLKDFETL 117 (224)
Q Consensus 41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~---~v~~~~G~~~~~~~l 117 (224)
.++|+...+.... +.+-..+.--. --|..||-+.=+-++++..+.-..|=-..|.+ .=||.+++ +++.+|
T Consensus 3 ~~l~~~n~~~~~~-----PAS~~KL~Tt~-aAL~~LG~d~r~~T~v~~~g~~~~g~l~G~L~i~G~GDP~L~~-~~L~~l 75 (345)
T TIGR00666 3 QPIYDYHGDTFML-----PASTQKVITAA-AALLQLGPQFRFTTTVETKGNVENGNLKGNLVLRFGGDPTLKR-QDIRNL 75 (345)
T ss_pred ceeEEECCCcccC-----CcHHHHHHHHH-HHHHhcCCCCceeeEEEecCcccCCcccccEEEEeecCCCcCH-HHHHHH
Confidence 4677777655432 23333344445 67788999999999988764321110111221 23788884 679999
Q ss_pred HHHHHHcCCEEEE-ecCCCC
Q psy8670 118 KERLHALGIKILL-DFVPNH 136 (224)
Q Consensus 118 v~~~h~~gi~vil-D~v~nh 136 (224)
++++++.||+-|- |++++.
T Consensus 76 a~~l~~~Gi~~i~G~v~~D~ 95 (345)
T TIGR00666 76 VATLKKSGVKQIDGNVLVDT 95 (345)
T ss_pred HHHHHHcCCcEEEeeEEEEc
Confidence 9999999998553 566543
No 241
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=52.04 E-value=58 Score=28.76 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
++..+.+-. .-++++|||++-|.-+...+ ..+.+ .-.+++++|.+..+..||||.+-+-+
T Consensus 55 ~~~R~~~YA-RllASiGINgvvlNNVNa~~-----------~~Lt~--~~l~~v~~lAdvfRpYGIkv~LSvnF 114 (328)
T PF07488_consen 55 DLTRYRDYA-RLLASIGINGVVLNNVNANP-----------KLLTP--EYLDKVARLADVFRPYGIKVYLSVNF 114 (328)
T ss_dssp --HHHHHHH-HHHHHTT--EEE-S-SS--C-----------GGGST--TTHHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred chhHHHHHH-HHHhhcCCceEEecccccCh-----------hhcCH--HHHHHHHHHHHHHhhcCCEEEEEeec
Confidence 445555555 67889999999998876554 12222 22689999999999999999987654
No 242
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=51.80 E-value=43 Score=26.08 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=40.6
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcC-CEEEEecCCCCCCccchhHH
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALG-IKILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~g-i~vilD~v~nh~~~~~~w~~ 145 (224)
+.|++.|++.|.++.=.... ...+ .+.+ -++.+++.+-++.+++.| +.+-+.++++....+-.-+.
T Consensus 104 ~~l~~~~~~~i~isl~~~~~------~~~~--~~~~-~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~ 170 (216)
T smart00729 104 EALKEAGVNRVSLGVQSGSD------EVLK--AINR-GHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFE 170 (216)
T ss_pred HHHHHcCCCeEEEecccCCH------HHHH--HhcC-CCCHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHH
Confidence 66677777766664421111 0111 1222 245689999999999999 89999998887644433333
No 243
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=51.51 E-value=39 Score=30.60 Aligned_cols=70 Identities=14% Similarity=0.020 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHh
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~ 146 (224)
++| ..|+++|||.|.+.- ++. +..-+..++. --+.++..+.++.+++.+..|-+|++++--+....=+.+
T Consensus 123 e~L-~~l~~~GvnrisiGv--QS~------~~~~L~~l~R-~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~~~~~~ 192 (394)
T PRK08898 123 EKF-AQFRASGVNRLSIGI--QSF------NDAHLKALGR-IHDGAEARAAIEIAAKHFDNFNLDLMYALPGQTLDEALA 192 (394)
T ss_pred HHH-HHHHHcCCCeEEEec--ccC------CHHHHHHhCC-CCCHHHHHHHHHHHHHhCCceEEEEEcCCCCCCHHHHHH
Confidence 567 889999999987754 111 1111112222 234678888889999888899999999887654443333
No 244
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.31 E-value=6.4 Score=32.01 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=32.6
Q ss_pred CCCCCCccCCCCcCCCC------CCHHHHHHHHHHHHHcCCEEEE
Q psy8670 92 ADFGYDISDYLSFEPLF------GDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 92 ~~~gY~~~d~~~v~~~~------G~~~~~~~lv~~~h~~gi~vil 130 (224)
-+.||.......++|.+ |+.+-+..-++++|++|+++.+
T Consensus 140 ~dGGy~llgLrr~~pe~fe~ipwg~~~v~~lTl~~lrqng~~~~l 184 (211)
T COG3222 140 FDGGYYLLGLRRFAPELFEAIPWGTPDVLELTLKALRQNGIDVYL 184 (211)
T ss_pred ccCcEEEEEeeccCHHHHhcCCCCCchHHHHHHHHHHHcCCcccc
Confidence 35788888888887764 8999999999999999999853
No 245
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.20 E-value=56 Score=27.91 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
.++.++++++|.++||..|.=+.+|.
T Consensus 128 ~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 128 PEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 47999999999999999986666664
No 246
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=50.93 E-value=21 Score=31.81 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.|+..+++++++.||++|+.+|+|-+.
T Consensus 149 ~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 149 LMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 578899999999999999999999876
No 247
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=50.82 E-value=1e+02 Score=26.65 Aligned_cols=64 Identities=8% Similarity=0.014 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
.+.+.+.+.+ ..+++.|++.|=+.--..... +.+ ......=+.+++++++++||++|+.|.+-.
T Consensus 117 ~~~~~~~~~v-~~~~~~G~~~iK~~~~g~~~~------~~~--~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 117 DGVEEVRAAV-REQLRRGADQIKIMATGGVLS------PGD--PPPDTQFSEEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred cCHHHHHHHH-HHHHHhCCCEEEEeccCCcCC------CCC--CCcccCcCHHHHHHHHHHHHHcCCEEEEEe
Confidence 4567777788 888888999987653211100 000 011112357899999999999999987643
No 248
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=50.21 E-value=77 Score=27.76 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
-+-+++.+-+ +.|+++|++.+-+.+-++.+. ..+.+. +|=++++|..+-+.|.+.|.+-+.=-.+=
T Consensus 219 ETeee~~etl-~~Lrelg~d~v~igqYl~p~~--~~~~v~-------~~~~p~~f~~~~~~a~~~gf~~v~~~p~v 284 (302)
T TIGR00510 219 ETNEEIKQTL-KDLRDHGVTMVTLGQYLRPSR--RHLPVK-------RYVSPEEFDYYRSVALEMGFLHAACGPFV 284 (302)
T ss_pred CCHHHHHHHH-HHHHhcCCCEEEeecccCCCC--CCCccc-------cCCCHHHHHHHHHHHHHcCChheEecccc
Confidence 4778888888 999999999998888765432 223333 35778999999999999998866554443
No 249
>PRK04302 triosephosphate isomerase; Provisional
Probab=50.20 E-value=46 Score=27.47 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=30.8
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
+.++++|++.+.+.- .+.. -..++..+++++|+++||.+|+++
T Consensus 79 ~~l~~~G~~~vii~~-ser~------------------~~~~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 79 EAVKDAGAVGTLINH-SERR------------------LTLADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHcCCCEEEEec-cccc------------------cCHHHHHHHHHHHHHCCCeEEEEc
Confidence 888999999994432 1110 113568899999999999999744
No 250
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=49.93 E-value=95 Score=26.66 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 56 GDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 56 ~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
++..-+.+.+.+.. ..||++|+..+... .+. +. ..+| +|.- +| .+.++.|.+.+++.||.++.++
T Consensus 34 PCsie~~~~~~~~A-~~lk~~g~~~~r~~-~~k-pR-Ts~~---s~~G----~g-~~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 34 PCAVESEEQMVKVA-EKLKELGVHMLRGG-AFK-PR-TSPY---SFQG----LG-EEGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred CCcCCCHHHHHHHH-HHHHHcCCCEEEEe-eec-CC-CCCC---ccCC----cH-HHHHHHHHHHHHHcCCCEEEee
Confidence 34456777777777 99999999855443 222 11 1111 2211 12 7899999999999999999877
No 251
>PRK05939 hypothetical protein; Provisional
Probab=49.84 E-value=25 Score=31.91 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 105 EPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 105 ~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
....|...+++++++.||++|+.+++|-..
T Consensus 141 ~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 141 ANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 334678899999999999999999999864
No 252
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=49.56 E-value=1.5e+02 Score=26.47 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHHcC----CCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 61 DLKGMIEKLPEHLHDLG----VGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG----~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+.+.+.+-. +.+++++ ...|.|.|..+.+.... +| .--+.+++.++.+.++++|+.|.+
T Consensus 262 s~e~a~~L~-~~lk~l~~~~~~~~VnLIPyn~~~~~~~-----~~-----~~ps~e~v~~f~~~L~~~Gi~vti 324 (347)
T PRK14453 262 SKEHAEAVV-GLLRNRGSWEHLYHVNLIPYNSTDKTPF-----KF-----QSSSAGQIKQFCSTLKSAGISVTV 324 (347)
T ss_pred CHHHHHHHH-HHHhhccccCCcceEEEecCCCCCCCCc-----cC-----CCCCHHHHHHHHHHHHHCCCcEEE
Confidence 334455545 7778774 57899999887643111 12 113578999999999999999864
No 253
>PRK09064 5-aminolevulinate synthase; Validated
Probab=49.28 E-value=35 Score=30.54 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
|+...++++.+.|+++|+-+|+|-+..
T Consensus 192 G~~~~l~~i~~l~~~~~~~livDEa~~ 218 (407)
T PRK09064 192 GDIAPIAEICDLADKYNALTYLDEVHA 218 (407)
T ss_pred ccccCHHHHHHHHHHcCCEEEEECCCc
Confidence 444568889999999999999998854
No 254
>PLN02389 biotin synthase
Probab=48.97 E-value=49 Score=29.95 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
.+.++..+.++.+|+.||++..-+++.|
T Consensus 210 ~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 210 RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 3788999999999999999999999998
No 255
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=48.92 E-value=37 Score=26.02 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCcc
Q psy8670 107 LFGDLKDFETLKERLHALGIKILLDFVPNHTSNQ 140 (224)
Q Consensus 107 ~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~ 140 (224)
.-++.++..+.++++++.|+.+.+.+++.....+
T Consensus 120 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~ 153 (204)
T cd01335 120 SGESFKERLEALKELREAGLGLSTTLLVGLGDED 153 (204)
T ss_pred CCcCHHHHHHHHHHHHHcCCCceEEEEEecCCCh
Confidence 4567889999999999999999998888766554
No 256
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=48.92 E-value=13 Score=31.89 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.|...+++++++.||++|+.+++|-+.
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECcc
Confidence 466778999999999999999999873
No 257
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=48.79 E-value=21 Score=27.18 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q psy8670 106 PLFGDLKDFETLKERLHALGIKILLD 131 (224)
Q Consensus 106 ~~~G~~~~~~~lv~~~h~~gi~vilD 131 (224)
.++.+..|++.+-+...+.||+|++|
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 45778899999999999999999998
No 258
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=48.74 E-value=36 Score=30.91 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHH--cCCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHA--LGIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~--~gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.+++.+.++.+++ .|+.+..|+.+.+-+...+=|++.+
T Consensus 271 ~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl 311 (414)
T TIGR01579 271 TRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETL 311 (414)
T ss_pred CHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHH
Confidence 56899999999999 8999999999998888777676555
No 259
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=48.62 E-value=44 Score=29.83 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCc-ccC----------CC----CCCCC----------CccCCCCcCCC-CCCHHH
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPI-FKS----------PM----ADFGY----------DISDYLSFEPL-FGDLKD 113 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi-~~~----------~~----~~~gY----------~~~d~~~v~~~-~G~~~~ 113 (224)
.+.++-.+++ ..|.+.|++-|-+.=. .+. .. .+-.| +-.|=..+||- +|+.+.
T Consensus 31 ~Dv~atv~QI-~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~ 109 (346)
T TIGR00612 31 IDIDSTVAQI-RALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRER 109 (346)
T ss_pred hhHHHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHH
Confidence 5778888899 9999999999998622 110 00 00011 11233457775 799999
Q ss_pred HHHHHHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670 114 FETLKERLHALGIKILLDFVPNHTSNQHEWF 144 (224)
Q Consensus 114 ~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~ 144 (224)
|++++++|+++|+-+=+= .||-|-+....
T Consensus 110 v~~vv~~ak~~~ipIRIG--VN~GSL~~~~~ 138 (346)
T TIGR00612 110 VRDVVEKARDHGKAMRIG--VNHGSLERRLL 138 (346)
T ss_pred HHHHHHHHHHCCCCEEEe--cCCCCCcHHHH
Confidence 999999999999876444 47766554333
No 260
>KOG1065|consensus
Probab=48.62 E-value=53 Score=32.70 Aligned_cols=63 Identities=22% Similarity=0.412 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHcCCC--eEEEcCcccCCCCCCCCCccCCCCcCCC-CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVG--AVWISPIFKSPMADFGYDISDYLSFEPL-FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~--~i~l~Pi~~~~~~~~gY~~~d~~~v~~~-~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
..+..+.+.. ++.+++|+. .+|.==-+.. .-.|| .+|+. |++ ++++++.+|++|+|+++=+-+
T Consensus 308 ~nls~~~dvv-~~~~~agiPld~~~~DiDyMd-------~ykDF-Tvd~~~fp~---~~~fv~~Lh~~G~kyvliidP 373 (805)
T KOG1065|consen 308 KNLSVVRDVV-ENYRAAGIPLDVIVIDIDYMD-------GYKDF-TVDKVWFPD---LKDFVDDLHARGFKYVLIIDP 373 (805)
T ss_pred ccHHHHHHHH-HHHHHcCCCcceeeeehhhhh-------cccce-eeccccCcc---hHHHHHHHHhCCCeEEEEeCC
Confidence 4567777777 777777774 4432111111 13454 55654 665 999999999999998765543
No 261
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=48.16 E-value=24 Score=26.26 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCEEEEecCCCCCCccchhHHhh
Q psy8670 114 FETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147 (224)
Q Consensus 114 ~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~ 147 (224)
++++++...+.|+++++|+=.+=.|. .+.|.+.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~-~~~~~k~ 34 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSR-KPGFNKE 34 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCC-CCCCCHH
Confidence 56788899999999999998887777 6666644
No 262
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.10 E-value=70 Score=26.85 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.++..++++.++++||++++=+-++
T Consensus 115 ~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 115 PDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4688999999999999999977664
No 263
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=48.08 E-value=1.4e+02 Score=26.46 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=51.8
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHH
Q psy8670 40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHD-LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLK 118 (224)
Q Consensus 40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~-lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv 118 (224)
+++|=-.+...|....+....+++++.+.+ +|+.+ .|+++|=|..=|..... + =+-+-+..+++.|+
T Consensus 215 gGvIgv~~~~~fl~~~~~~~atldd~v~hI-~h~v~~~G~dhVglGsDf~g~~~-----~------p~gled~~~l~~l~ 282 (313)
T COG2355 215 GGVIGVNFIPAFLRPGGAARATLDDLVRHI-DHFVELVGIDHVGLGSDFDGGTG-----P------PDGLEDVGKLPNLT 282 (313)
T ss_pred CCEEEEEeehhhccCCCCCCCCHHHHHHHH-HHHHHhcCcceeEecccccCCCC-----C------chhhcChhHHHHHH
Confidence 456666666666554111356999999999 99987 79999977654432110 0 12367788999999
Q ss_pred HHHHHcCC
Q psy8670 119 ERLHALGI 126 (224)
Q Consensus 119 ~~~h~~gi 126 (224)
+++.++|.
T Consensus 283 ~~L~~~G~ 290 (313)
T COG2355 283 AALIERGY 290 (313)
T ss_pred HHHHHcCC
Confidence 99999884
No 264
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=47.97 E-value=51 Score=21.35 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q psy8670 66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLD 131 (224)
Q Consensus 66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD 131 (224)
.+.+ ...++.|++.+-++ |+ ++...+.++.+.+.+.||+++.=
T Consensus 18 ~~~~-~~a~~~g~~~v~iT---------------Dh-------~~~~~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 18 EELV-KRAKELGLKAIAIT---------------DH-------GNLFGAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred HHHH-HHHHHcCCCEEEEe---------------eC-------CcccCHHHHHHHHHHcCCeEEEE
Confidence 3344 77788899888543 22 12233446666677789998753
No 265
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.83 E-value=28 Score=31.96 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.+++.+.++.+++. |+.+..|+++++-+...+-|++.+
T Consensus 278 t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~~tl 318 (437)
T PRK14331 278 TKEEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFEETL 318 (437)
T ss_pred CHHHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHHHHH
Confidence 678999999999998 999999999999988877777665
No 266
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=47.62 E-value=28 Score=31.31 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.|...+++++++.||++|+.+|+|-+.-
T Consensus 148 ~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 148 TFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 4778999999999999999999998864
No 267
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=47.45 E-value=42 Score=27.10 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=52.9
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC--CCCCCCccCCCCcCCCCC--------C
Q psy8670 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFGYDISDYLSFEPLFG--------D 110 (224)
Q Consensus 41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~v~~~~G--------~ 110 (224)
.++.++...... .......+.+ ..|+++|+. +.|--+-.... .....-..|+-.+|+.+- .
T Consensus 118 ~lvlei~e~~~~-------~~~~~~~~~i-~~l~~~G~~-ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~ 188 (241)
T smart00052 118 RLELEITESVLL-------DDDESAVATL-QRLRELGVR-IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPED 188 (241)
T ss_pred HEEEEEeChhhh-------cChHHHHHHH-HHHHHCCCE-EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhH
Confidence 566676654332 2344455667 999999996 45433211100 001122467777776653 2
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
..-++.+++.||..|++||++-|=+
T Consensus 189 ~~~l~~l~~~~~~~~~~via~gVe~ 213 (241)
T smart00052 189 EAIVQSIIELAQKLGLQVVAEGVET 213 (241)
T ss_pred HHHHHHHHHHHHHCCCeEEEecCCC
Confidence 3458999999999999999997754
No 268
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=47.35 E-value=22 Score=32.13 Aligned_cols=72 Identities=22% Similarity=0.404 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccC---------------C--CCCCCCCccCCCC---------------cCCC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKS---------------P--MADFGYDISDYLS---------------FEPL 107 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~---------------~--~~~~gY~~~d~~~---------------v~~~ 107 (224)
|=..++..-+ ..|.+-|=..+..+|++.. + ..+++| -.||.. .+|+
T Consensus 91 ~VVpgi~~~I-~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y-~iD~~~LE~~~~~~~vkl~iLCnPH 168 (388)
T COG1168 91 GVVPGISLAI-RALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRY-EIDFDALEKAFVDERVKLFILCNPH 168 (388)
T ss_pred cchHhHHHHH-HHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcE-EecHHHHHHHHhcCCccEEEEeCCC
Confidence 5566676666 7888888777777887642 1 122333 123322 3443
Q ss_pred --CC---CHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 108 --FG---DLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 108 --~G---~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
-| |.+||..+.+.|.++|++||-|=+
T Consensus 169 NP~Grvwt~eeL~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 169 NPTGRVWTKEELRKIAELCLRHGVRVISDEI 199 (388)
T ss_pred CCCCccccHHHHHHHHHHHHHcCCEEEeecc
Confidence 24 479999999999999999997643
No 269
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=47.30 E-value=47 Score=28.51 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
+-+.+...+ .-+|++|+|+|-+.-.-+ =.++.+.|-+.||-|+.++..
T Consensus 34 ~~~~~~~d~-~l~k~~G~N~iR~~h~p~-------------------------~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 34 PDEAMERDL-ELMKEMGFNAIRTHHYPP-------------------------SPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp -HHHHHHHH-HHHHHTT-SEEEETTS---------------------------SHHHHHHHHHHT-EEEEE-S-
T ss_pred CHHHHHHHH-HHHHhcCcceEEcccccC-------------------------cHHHHHHHhhcCCEEEEeccc
Confidence 456677777 999999999998742111 025677888889999999876
No 270
>PRK05967 cystathionine beta-lyase; Provisional
Probab=47.30 E-value=31 Score=31.35 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.++..+++++++.||++|+-+++|-++.
T Consensus 162 ~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 162 TFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 5788999999999999999999999874
No 271
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=46.97 E-value=65 Score=28.22 Aligned_cols=74 Identities=26% Similarity=0.231 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCcc
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQ 140 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~ 140 (224)
+...+.+-+ ++++++|++.+.+.|.++.... +. ...+=+.++.+++.+++.+.+-+=- ..+||
T Consensus 176 n~~ei~~~~-~~~~~lGv~~i~i~p~~~~~~a-----~~-----~~~~l~~~e~~~~~~~~~~~~~~~~--~~~~~---- 238 (318)
T TIGR03470 176 DPEEVAEFF-DYLTDLGVDGMTISPGYAYEKA-----PD-----QDHFLGRRQTKKLFREVLSNGNGKR--WRFNH---- 238 (318)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEecCcccccc-----cc-----cccccCHHHHHHHHHHHHhhccCCC--CcccC----
Confidence 345555555 7777777777777776643311 10 1122345677777666654322111 13344
Q ss_pred chhHHhhhcCC
Q psy8670 141 HEWFKKSLANI 151 (224)
Q Consensus 141 ~~w~~~~~~~~ 151 (224)
++.|.+.+.+.
T Consensus 239 s~~~l~~l~g~ 249 (318)
T TIGR03470 239 SPLFLDFLAGN 249 (318)
T ss_pred CHHHHHHHcCC
Confidence 36666776654
No 272
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=46.96 E-value=30 Score=23.22 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHc-CCCeEEEcCcccCCCC-CCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 65 MIEKLPEHLHDL-GVGAVWISPIFKSPMA-DFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 65 ~~~~l~~~l~~l-G~~~i~l~Pi~~~~~~-~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+...+...+.++ |.+...+.+....... .......|..-+=..-|...+..++++.++++|.+++.
T Consensus 12 ~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 12 IAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred HHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 334442345666 8877766542211000 00011222222223346678899999999999999864
No 273
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.92 E-value=1e+02 Score=25.82 Aligned_cols=61 Identities=18% Similarity=0.350 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCC-HHHHHHHHHHHHHcCCEEEEecC
Q psy8670 62 LKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGD-LKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 62 l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~-~~~~~~lv~~~h~~gi~vilD~v 133 (224)
++.+...+ +..+.+|+..|.+.|... +|.. .-+..+-. .+-++++++.|.++||++.+.-.
T Consensus 89 ~~~~~~~i-~~a~~lGa~~i~~~~~~~------~~~~----~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 89 LDMIKLAM-DMAKEMNAGYTLISAAHA------GYLT----PPNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHH-HHHHHhCCCEEEEcCCCC------CCCC----CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 34444455 888999999998877432 1111 00111111 24589999999999999998854
No 274
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=46.65 E-value=29 Score=29.04 Aligned_cols=30 Identities=37% Similarity=0.430 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
+.++.++.++.+|++|+||++=+--+|.+.
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~ 78 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGA 78 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCC
Confidence 468899999999999999998887666543
No 275
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=46.55 E-value=28 Score=31.31 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=38.7
Q ss_pred CCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670 77 GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144 (224)
Q Consensus 77 G~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~ 144 (224)
.+.+|.+-|++... |.-+ -+.+.++++.+.|+++|+-+|+|=|....+....++
T Consensus 179 ~~aavi~Epi~~~~----G~~~----------~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~ 232 (397)
T TIGR03246 179 KTCAVIVEPIQGEG----GVVP----------ADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY 232 (397)
T ss_pred CeEEEEEecccCCC----CCcC----------CCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch
Confidence 36678777876432 1111 146889999999999999999999986666555555
No 276
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=46.50 E-value=93 Score=25.78 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHHcC-CCeEEEcCcccCCCCCCCCCcc--CCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy8670 71 EHLHDLG-VGAVWISPIFKSPMADFGYDIS--DYLSFEPLFGDLKDFETLKERLHALGIKIL 129 (224)
Q Consensus 71 ~~l~~lG-~~~i~l~Pi~~~~~~~~gY~~~--d~~~v~~~~G~~~~~~~lv~~~h~~gi~vi 129 (224)
+.+++++ +..+.|+|..+.+.. .|... +|...+-.--+.++++++.+.+++.|+++.
T Consensus 186 ~~l~~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 186 EFIKDMGNIEKIELLPYHELGKH--KWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHhcCCcceEEEecCCccchh--HHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 5556654 677888887765421 11111 110111122557899999999999998873
No 277
>PRK13753 dihydropteroate synthase; Provisional
Probab=46.18 E-value=1.4e+02 Score=25.95 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=31.2
Q ss_pred EEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCccc
Q psy8670 43 FYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK 88 (224)
Q Consensus 43 iY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~ 88 (224)
|..+-|+||.++.. .-+.+...++. .++-+-|.+.|=+..-..
T Consensus 7 IlNvTPDSFsDGg~--~~~~d~a~~~a-~~m~~~GAdIIDIGgeST 49 (279)
T PRK13753 7 ILNLTEDSFFDESR--RLDPAGAVTAA-IEMLRVGSDVVDVGPAAS 49 (279)
T ss_pred EEeCCCCCCCCCCC--CCCHHHHHHHH-HHHHHCCCcEEEECCCCC
Confidence 44566999987422 13567888888 888899999998876443
No 278
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=45.94 E-value=1.1e+02 Score=22.08 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHH----HcCC-EEEEecCC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLH----ALGI-KILLDFVP 134 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h----~~gi-~vilD~v~ 134 (224)
.++....++++..|++.|++ ..+.|... .++ |+.+++-+++++|| +.|. ||+..+-+
T Consensus 15 ~s~s~yVa~~i~~l~~sGl~-y~~~pm~T--------------~IE---Ge~dev~~~i~~~~e~~~~~G~~Rv~t~iki 76 (97)
T TIGR00106 15 ASVSSYVAAAIEVLKESGLK-YELHPMGT--------------LIE---GDLDELFEAIKAIHEAVLEKGSDRVYTSIKI 76 (97)
T ss_pred CcHHHHHHHHHHHHHHcCCC-eEecCCcc--------------EEe---cCHHHHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence 35666777776999988884 44555322 222 66788777777777 4566 99988888
Q ss_pred CCCCc
Q psy8670 135 NHTSN 139 (224)
Q Consensus 135 nh~~~ 139 (224)
++.-.
T Consensus 77 d~R~d 81 (97)
T TIGR00106 77 DTRTD 81 (97)
T ss_pred EecCC
Confidence 87654
No 279
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=45.72 E-value=61 Score=28.41 Aligned_cols=62 Identities=18% Similarity=0.357 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHcC--CCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 61 DLKGMIEKLPEHLHDLG--VGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
+-+.+.+.+ +.+++.| ++.|+|-.=+. .+|. + +..|+ +|- +.++|++++|++|+||++=+.+
T Consensus 22 ~~~~v~~~~-~~~~~~~iP~d~i~lD~~~~-----~~~~--~-f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P 86 (317)
T cd06600 22 PQDKVVEVV-DIMQKEGFPYDVVFLDIHYM-----DSYR--L-FTWDPYRFP---EPKKLIDELHKRNVKLVTIVDP 86 (317)
T ss_pred CHHHHHHHH-HHHHHcCCCcceEEEChhhh-----CCCC--c-eeechhcCC---CHHHHHHHHHHCCCEEEEEeec
Confidence 445566666 7777755 46777753221 1222 2 24454 455 4579999999999999987655
No 280
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=45.65 E-value=46 Score=28.48 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCccchh
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTSNQHEW 143 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w 143 (224)
.+++++|++.||..||.+++.+ |...+-..
T Consensus 144 ~~~l~~l~~~a~~lGle~lVEV---h~~~El~~ 173 (254)
T PF00218_consen 144 DDQLEELLELAHSLGLEALVEV---HNEEELER 173 (254)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE---SSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEE---CCHHHHHH
Confidence 4789999999999999999999 87765433
No 281
>PRK09028 cystathionine beta-lyase; Provisional
Probab=45.51 E-value=35 Score=31.02 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.|...+++++++.||++|+.+++|-+..
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4678999999999999999999998764
No 282
>PLN02591 tryptophan synthase
Probab=45.48 E-value=1e+02 Score=26.16 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
.+|..+++++|+++||..|+=+.++.
T Consensus 117 ~ee~~~~~~~~~~~gl~~I~lv~Ptt 142 (250)
T PLN02591 117 LEETEALRAEAAKNGIELVLLTTPTT 142 (250)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 48899999999999999998555664
No 283
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=45.20 E-value=79 Score=27.44 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccCC
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKSP 90 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~ 90 (224)
+...+++...++++|+..+.+.|..+..
T Consensus 112 ~~a~~E~er~v~~~gf~g~~l~p~~~~~ 139 (293)
T COG2159 112 EAAAEELERRVRELGFVGVKLHPVAQGF 139 (293)
T ss_pred HHHHHHHHHHHHhcCceEEEecccccCC
Confidence 5556666467778999999999987653
No 284
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=45.14 E-value=29 Score=30.91 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=38.0
Q ss_pred CCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670 77 GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144 (224)
Q Consensus 77 G~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~ 144 (224)
.+.+|.+.|++... |..+ -+.+.++++.+.|+++|+-+|.|-|....+....++
T Consensus 175 ~~~avivep~~~~~----G~~~----------~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~ 228 (389)
T PRK01278 175 NTAAILIEPIQGEG----GIRP----------APDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF 228 (389)
T ss_pred CeEEEEEecccCCC----CCcC----------CCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce
Confidence 46788888874322 1111 235799999999999999999999987555444433
No 285
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=45.12 E-value=66 Score=30.06 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
..+....+.+ +-+|+||+++--++=-++.-.. .|.. -.+|+ ...+=..+||++++++||+.|+-+
T Consensus 70 d~Yhry~eDi-~Lm~~lG~~aYRfSIsWsRI~P-~G~~----~~~N~--~gl~~Y~~lId~L~~~GI~P~VTL 134 (478)
T PRK09593 70 DMYHHYKEDI-ALFAEMGFKTYRMSIAWTRIFP-KGDE----LEPNE--AGLQFYEDIFKECHKYGIEPLVTI 134 (478)
T ss_pred chHHhhHHHH-HHHHHcCCCEEEEecchhhccc-CCCC----CCCCH--HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4577788888 9999999999988754432111 1100 01111 234557899999999999999877
No 286
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.01 E-value=12 Score=30.34 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEe
Q psy8670 109 GDLKDFETLKERLHALGIKILLD 131 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD 131 (224)
-++++++++++.||.+|+++-+-
T Consensus 164 m~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 164 MDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred hcHHHHHHHHHHHHHcchHHHhc
Confidence 35789999999999999988553
No 287
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=44.97 E-value=28 Score=26.65 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 112 KDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 112 ~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
+||+-|++.|++.|+++++=++|=
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~Pv 59 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQPV 59 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE---
T ss_pred HHHHHHHHHHHHcCCceEEEecCC
Confidence 699999999999999999877764
No 288
>KOG0259|consensus
Probab=44.92 E-value=24 Score=32.20 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTSNQH 141 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~ 141 (224)
+.+-|+++++.||++||-||.|-|+.|+.-++
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~ 248 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFGD 248 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecCC
Confidence 36889999999999999999999999987544
No 289
>PLN02950 4-alpha-glucanotransferase
Probab=44.75 E-value=37 Score=34.44 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 112 KDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 112 ~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.+++++.+.|+++||+++-|+.+.
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 478889999999999999999985
No 290
>KOG1405|consensus
Probab=44.72 E-value=80 Score=28.74 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHH-cCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 59 VGDLKGMIEKLPEHLHD-LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~-lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
.+.+..+++.+..|-++ .-|-+|.+-||+.-+..+ .++++=|+.|-+-++++|+..|+|-|-.-.
T Consensus 252 ~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDn--------------haSp~Ff~kLrdi~~Kh~v~fivDEVQTGg 317 (484)
T KOG1405|consen 252 QGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDN--------------HASPDFFRKLRDITKKHGVAFIVDEVQTGG 317 (484)
T ss_pred hhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCc--------------cCCHHHHHHHHHHHHhcCeEEEeeeeecCC
Confidence 36678888877455533 468899999998655332 467888999999999999999999998766
Q ss_pred Cccc
Q psy8670 138 SNQH 141 (224)
Q Consensus 138 ~~~~ 141 (224)
+...
T Consensus 318 GaTG 321 (484)
T KOG1405|consen 318 GATG 321 (484)
T ss_pred CccC
Confidence 6543
No 291
>PRK05942 aspartate aminotransferase; Provisional
Probab=44.65 E-value=64 Score=28.74 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
+.++++++++.|+++|+-||.|-+...
T Consensus 188 s~~~~~~i~~~a~~~~~~iI~De~y~~ 214 (394)
T PRK05942 188 PREFFEEIVAFARKYEIMLVHDLCYAE 214 (394)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccchh
Confidence 368999999999999999999988643
No 292
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=44.36 E-value=47 Score=30.64 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCC---------------Ccc-CC--CCcCC-CCCCHHHHHHHHHH
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY---------------DIS-DY--LSFEP-LFGDLKDFETLKER 120 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY---------------~~~-d~--~~v~~-~~G~~~~~~~lv~~ 120 (224)
+.-.|+.+.+ .-+..+|+.+.-+.-.........-+ +.. |+ ..+.. .+++.+.+..+++.
T Consensus 14 ~ggaGi~aDi-~t~~alg~~~~~v~Ta~t~Qnt~~~~~i~~~~~~~~~~q~~a~~~d~~~~~ik~G~l~~~e~~~~i~~~ 92 (448)
T PRK08573 14 GGGAGIEADL-KTFAALGVHGAVAITSVTAQNTYEVRAIHDLPPEVVAAQIEAVWEDMGIDAAKTGMLSNREIIEAVAKT 92 (448)
T ss_pred CCHHHHHHHH-HHHHHcCCeecccceEEEeecCCCceEEEECCHHHHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHHH
Confidence 3447899999 99999999877665433221100000 000 00 01111 14578889999999
Q ss_pred HHHcCCEEEEecCCCCCC
Q psy8670 121 LHALGIKILLDFVPNHTS 138 (224)
Q Consensus 121 ~h~~gi~vilD~v~nh~~ 138 (224)
++++|++|++|-|+-..+
T Consensus 93 ~k~~g~~vv~DPv~~~~s 110 (448)
T PRK08573 93 VSKYGFPLVVDPVMIAKS 110 (448)
T ss_pred HHHcCCCEEEcCccccCC
Confidence 999999999998876443
No 293
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=44.21 E-value=88 Score=27.36 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHH-HHHHH-HHHHHcCCEEEEec
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKD-FETLK-ERLHALGIKILLDF 132 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~-~~~lv-~~~h~~gi~vilD~ 132 (224)
++|+++|+++|+|+|+|-+...... .|- +-..+=.+.++--.+| |.+.+ +...+.|++|..=+
T Consensus 20 ~~l~~ri~~~~~~tV~Lqaf~d~~g--dg~-~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWM 84 (294)
T PF14883_consen 20 DKLIQRIKDMGINTVYLQAFADPDG--DGN-ADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWM 84 (294)
T ss_pred HHHHHHHHHcCCCEEEEEeeeCCCC--CCc-eeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEee
Confidence 3444899999999999998764421 221 1111223333444444 56666 44448899997533
No 294
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.98 E-value=46 Score=30.41 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.+++.++++.+++. |+.+..|+.+..-+...+-|.+.+
T Consensus 257 ~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl 297 (418)
T PRK14336 257 TNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSY 297 (418)
T ss_pred CHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHH
Confidence 578999999999998 999999999998888777776555
No 295
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=43.85 E-value=41 Score=29.67 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=48.4
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHH
Q psy8670 40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHD-LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLK 118 (224)
Q Consensus 40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~-lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv 118 (224)
+++|=-.+...|-..+.+...+++++.+.+ +|+.+ .|+++|=|..=|.... . .-+.+.+..++..|+
T Consensus 226 GGviGi~~~~~fl~~~~~~~~~~~~~~~Hi-~y~~~l~G~dhVgiGsDfdg~~-----~------~~~gl~~~~~~~~l~ 293 (320)
T PF01244_consen 226 GGVIGINFYPAFLGDDWDPRASLDDLVDHI-DYIVDLVGIDHVGIGSDFDGID-----G------PPEGLEDPSDLPNLT 293 (320)
T ss_dssp T-EEEEESSHHHHSTTHSSG-BHHHHHHHH-HHHHHHH-GGGEEEE--BTTTS-----S------HBBTBSSGGGHHHHH
T ss_pred CcEEEEEcchhhhcccccccccHHHHHHHH-HHHHHhcCCCeEEECcccCCCC-----C------CCCccCCHHHHHHHH
Confidence 355555555666544323567899999999 99887 8999998877663211 0 022345678999999
Q ss_pred HHHHHcCCE
Q psy8670 119 ERLHALGIK 127 (224)
Q Consensus 119 ~~~h~~gi~ 127 (224)
+++.++|..
T Consensus 294 ~~L~~rG~s 302 (320)
T PF01244_consen 294 EELLKRGYS 302 (320)
T ss_dssp HHHHHTTS-
T ss_pred HHHHHCCCC
Confidence 999998863
No 296
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=43.58 E-value=24 Score=31.49 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 106 PLFGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 106 ~~~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
...|+..+++++++.||++|+.+++|-+.-
T Consensus 169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 346888999999999999999999999754
No 297
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=43.48 E-value=27 Score=30.88 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+.++..+.++.||+.||++-.-+.+.|..
T Consensus 177 ~~~~~~~~i~~a~~~Gi~v~s~~i~G~~E 205 (343)
T TIGR03551 177 STAEWIEIIKTAHKLGIPTTATIMYGHVE 205 (343)
T ss_pred CHHHHHHHHHHHHHcCCcccceEEEecCC
Confidence 66788999999999999998877777663
No 298
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=43.43 E-value=38 Score=29.73 Aligned_cols=61 Identities=11% Similarity=-0.006 Sum_probs=37.1
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
..||++|++ +.+++ +......-+.+... +.|. -+.++..+.++.||+.||++-.++.+.|.
T Consensus 114 ~~Lk~aG~~-~~~~~--Et~~~~l~~~~~~~--~~p~-k~~~~~l~~i~~a~~~Gi~~~s~~i~G~g 174 (322)
T TIGR03550 114 ARLKPVNAS-MGLML--ETTSERLCKGEAHY--GSPG-KDPAVRLETIEDAGRLKIPFTTGILIGIG 174 (322)
T ss_pred HHHHhhCCC-CCcch--hhhccccccccccC--CCCC-CCHHHHHHHHHHHHHcCCCccceeeEeCC
Confidence 788888874 45553 32211111112211 1111 12356789999999999999999999983
No 299
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=43.17 E-value=70 Score=27.65 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+...+...|..+|..++.+.+..............|..-+=+.-|...+..+.++.|+++|+++|.
T Consensus 56 ~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~ 121 (321)
T PRK11543 56 IGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLA 121 (321)
T ss_pred HHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEE
Confidence 334433567789999988876422111111123333333334457889999999999999999974
No 300
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=42.77 E-value=1.1e+02 Score=25.26 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCC-CCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFG-YDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~g-Y~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+..++.-.|..+|.++..+.|--... .+-| ..+.|-.-.=+.-|.-+++..++..|++.|.+||.
T Consensus 53 Igkk~Aa~L~s~G~~a~fv~p~ea~h-gdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~lia 118 (202)
T COG0794 53 IGKKFAARLASTGTPAFFVGPAEALH-GDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIA 118 (202)
T ss_pred HHHHHHHHHHccCCceEEecCchhcc-CCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 33445578899999999999864332 1222 34445444445568889999999999999999964
No 301
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=42.61 E-value=1.5e+02 Score=27.24 Aligned_cols=99 Identities=21% Similarity=0.233 Sum_probs=61.1
Q ss_pred CCceEEEEecccccCcCCCC-----------CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC-C
Q psy8670 39 QTSVFYHLYPRSFKDSNGDG-----------VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE-P 106 (224)
Q Consensus 39 ~~~viY~i~~~~f~~~~~~~-----------~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~-~ 106 (224)
+.+++||.++..|.+.+-.+ .-|-+++ . .-+|+.|+..+.++- +.-. +.---+++|..-+ +
T Consensus 22 e~~~~~~fh~nT~~dq~~f~~~~f~~~Ftae~wDP~eW---a-r~fK~aGAKyvilva--kHHD-GFaLw~t~ys~wnsv 94 (430)
T COG3669 22 EGSPFYHFHPNTYGDQEWFGGQEFPPRFTAENWDPREW---A-RLFKEAGAKYVILVA--KHHD-GFALWPTDYSVWNSV 94 (430)
T ss_pred cCCceEEeccccccCcccccccccccccCcccCCHHHH---H-HHHHHcCCcEEEEee--eecC-Ceeeccccccccccc
Confidence 46889999988886642111 0122222 2 567999999876654 3321 1111233554433 5
Q ss_pred CCCCH-HHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhh
Q psy8670 107 LFGDL-KDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 107 ~~G~~-~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
..|.. +-+.++.++++++||+. -|.+|.+ .|+|+...-
T Consensus 95 k~GpKrDlvgela~Avr~qGL~F---Gvy~s~a-~h~W~~~~g 133 (430)
T COG3669 95 KRGPKRDLVGELAKAVREQGLRF---GVYLSGA-WHPWDFHSG 133 (430)
T ss_pred ccCCcccHHHHHHHHHHHcCCee---eEeeccC-cccccccCC
Confidence 56664 55788999999999987 4566877 788987654
No 302
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=42.55 E-value=25 Score=30.32 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
|...+++++++.||++|+.+|+|-+-
T Consensus 146 G~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 146 GDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred CCccCHHHHHHHHHHcCCEEEEEccc
Confidence 44456889999999999999999984
No 303
>PLN02509 cystathionine beta-lyase
Probab=42.52 E-value=37 Score=31.63 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.|...+++++++.||++|+.||+|-..
T Consensus 230 tG~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 230 RQQISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 577899999999999999999999974
No 304
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=42.43 E-value=22 Score=31.26 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.|+..+++++++.||++|+.|++|-..-
T Consensus 152 tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 152 YGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 4677889999999999999999999865
No 305
>KOG2499|consensus
Probab=42.40 E-value=32 Score=32.27 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEec-CCCCCCc
Q psy8670 110 DLKDFETLKERLHALGIKILLDF-VPNHTSN 139 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~-v~nh~~~ 139 (224)
|.+|.+++|+-|+-+|||||..+ ++.|+++
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 58999999999999999999877 4789886
No 306
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=42.39 E-value=30 Score=29.51 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
+.++++++++.||++|+.+++|-+...
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 368999999999999999999998654
No 307
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=42.21 E-value=98 Score=27.13 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEE
Q psy8670 110 DLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vil 130 (224)
+.+|+.++++.++++|+.+.+
T Consensus 168 N~~ei~~~~~~~~~~gi~~~~ 188 (329)
T PRK13361 168 NDDEVLDLVEFCRERGLDIAF 188 (329)
T ss_pred CHHHHHHHHHHHHhcCCeEEE
Confidence 357999999999999997754
No 308
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.07 E-value=46 Score=30.82 Aligned_cols=39 Identities=15% Similarity=0.408 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.+++.+.++.+++. |+.+..|+.+...+...+-|.+.+
T Consensus 288 t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti 328 (459)
T PRK14338 288 TVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTY 328 (459)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHH
Confidence 788999999999998 899999999998888777777665
No 309
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=41.97 E-value=1.3e+02 Score=26.76 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 190 s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~ 219 (396)
T PRK09257 190 TPEQWDELAELLKERGLIPFLDIAYQGFGD 219 (396)
T ss_pred CHHHHHHHHHHHHhCCcEEEEecccccccc
Confidence 468999999999999999999999887653
No 310
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=41.80 E-value=51 Score=29.43 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
|+..+++++++.|+++|+-+|+|-+..
T Consensus 191 G~~~~l~~i~~l~~~~~~~livDea~~ 217 (402)
T TIGR01821 191 GDIAPIEEICDLADKYGALTYLDEVHA 217 (402)
T ss_pred CCccCHHHHHHHHHHcCCEEEEeCccc
Confidence 444458889999999999999999843
No 311
>PRK07050 cystathionine beta-lyase; Provisional
Probab=41.69 E-value=37 Score=30.66 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
.|...+++++++.||++|+.|++|-....
T Consensus 163 ~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 163 TMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 46789999999999999999999998754
No 312
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=41.68 E-value=20 Score=29.80 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
.... +...++|.+.|-++..+....+ +. .+ -..+++++++++||+.||++|+...+..-
T Consensus 79 ~~~v-e~A~~~GAd~vd~vi~~~~~~~--~~--~~--------~~~~~i~~v~~~~~~~gl~vIlE~~l~~~ 137 (236)
T PF01791_consen 79 VAEV-EEAIRLGADEVDVVINYGALGS--GN--ED--------EVIEEIAAVVEECHKYGLKVILEPYLRGE 137 (236)
T ss_dssp HHHH-HHHHHTT-SEEEEEEEHHHHHT--TH--HH--------HHHHHHHHHHHHHHTSEEEEEEEECECHH
T ss_pred HHHH-HHHHHcCCceeeeecccccccc--cc--HH--------HHHHHHHHHHHHHhcCCcEEEEEEecCch
Confidence 3445 6666777777766654421100 00 00 12478999999999999999999776543
No 313
>KOG0470|consensus
Probab=41.61 E-value=5.4 Score=38.88 Aligned_cols=48 Identities=35% Similarity=0.744 Sum_probs=35.2
Q ss_pred chhcccCCCcceeecccccCC--CCCCCCcchhhHH----------------------------HHHHHhhcccCCCC
Q psy8670 160 LARLHDLGVGAVWISPIFKSP--MADFGYDISDYLR----------------------------IKILLDFVPNHTSN 207 (224)
Q Consensus 160 w~~~~~lG~~~~w~~p~f~~~--~~dlny~n~d~~~----------------------------i~ii~d~v~nh~~~ 207 (224)
..+.|.+|++.+-++|+|.-+ +.-.+|....|+. |-|+||.|.||++.
T Consensus 261 lphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~ 338 (757)
T KOG0470|consen 261 LPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAK 338 (757)
T ss_pred hhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhccc
Confidence 456788999999999998762 3445555544432 46999999999887
No 314
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=41.59 E-value=23 Score=31.82 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=26.6
Q ss_pred CcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 103 SFEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 103 ~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
.++..-|...+++++.+.||++|+.+++|.+
T Consensus 179 ~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 179 GVQYYTGQLFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred ccccccceecCHHHHHHHHHHcCCEEEEEcc
Confidence 3455568888999999999999999999986
No 315
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=41.51 E-value=80 Score=26.24 Aligned_cols=70 Identities=24% Similarity=0.317 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCeEEEcC--cccCCC----------CCCCC-----CccCCCCcCCCC----CCHHHHHHHHHHHHH
Q psy8670 65 MIEKLPEHLHDLGVGAVWISP--IFKSPM----------ADFGY-----DISDYLSFEPLF----GDLKDFETLKERLHA 123 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~P--i~~~~~----------~~~gY-----~~~d~~~v~~~~----G~~~~~~~lv~~~h~ 123 (224)
+.+.+ +.++++|++.|.+.| .+.... ...|- .+....-+++.- -..+.+++.++.|++
T Consensus 17 l~~~l-~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 95 (274)
T COG1082 17 LEEIL-RKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKE 95 (274)
T ss_pred HHHHH-HHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 55566 888999999999997 222110 00111 111110112111 125677778888888
Q ss_pred cCCEEEEecCCC
Q psy8670 124 LGIKILLDFVPN 135 (224)
Q Consensus 124 ~gi~vilD~v~n 135 (224)
.|.++++-.+..
T Consensus 96 lg~~~vv~~~g~ 107 (274)
T COG1082 96 LGAKVVVVHPGL 107 (274)
T ss_pred cCCCeEEeeccc
Confidence 888877766643
No 316
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=41.43 E-value=32 Score=29.43 Aligned_cols=27 Identities=30% Similarity=0.660 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCcc
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTSNQ 140 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~~~ 140 (224)
.+++++|++.||+.||.+++.+ |...+
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV---h~~eE 168 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV---HNEEE 168 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE---CCHHH
Confidence 5679999999999999999998 65543
No 317
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=41.37 E-value=1.3e+02 Score=23.55 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+...+...+..+|.++..+...... .-...|..-+=..-|...+..++++.||++|++||.
T Consensus 44 ~A~~~~~~l~~~g~~~~~~~~~~~~-----~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 44 VGKAFAMRLMHLGFNVYVVGETTTP-----SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHHHHHHHhCCCeEEEeCCcccC-----CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 3334435677889988877553211 111223222223347788999999999999999965
No 318
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=40.93 E-value=25 Score=31.23 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.|...+++++++.||++|+.+++|-..
T Consensus 138 ~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 138 TLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 355667899999999999999999974
No 319
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=40.75 E-value=21 Score=31.42 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 106 PLFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 106 ~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
|.-.+.++..+.++.+|+.||++...+.+.|
T Consensus 175 ~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl 205 (340)
T TIGR03699 175 PKKISSEEWLEVMETAHKLGLPTTATMMFGH 205 (340)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeEeeC
Confidence 3345788899999999999999999999997
No 320
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.63 E-value=1.2e+02 Score=27.23 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEE
Q psy8670 109 GDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vil 130 (224)
.+.+.+.++.+.++++|+.+.+
T Consensus 310 ps~e~l~~f~~~L~~~gi~v~i 331 (356)
T PRK14455 310 TPKEDIFAFEDTLKKNGVNCTI 331 (356)
T ss_pred CCHHHHHHHHHHHHHCCCcEEE
Confidence 3568899999999999999865
No 321
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.53 E-value=46 Score=30.57 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.+++.+.++.++++ |+.+..|+.+..-+...+-|++.+
T Consensus 282 ~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed~~~tl 322 (444)
T PRK14325 282 TALEYKSIIRKLRAARPDIAISSDFIVGFPGETDEDFEATM 322 (444)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHH
Confidence 678999999999987 899999999998887777776655
No 322
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=40.38 E-value=28 Score=30.85 Aligned_cols=28 Identities=21% Similarity=0.422 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.|+..+++++++.||++|..+++|-..-
T Consensus 159 ~G~~~~l~~i~~la~~~~~~livDea~~ 186 (370)
T TIGR02539 159 YGNLPDAGKVAKVCREKGVPLLLNCAYT 186 (370)
T ss_pred CccccCHHHHHHHHHHcCCeEEEECccc
Confidence 5888899999999999999999998754
No 323
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.36 E-value=2.3e+02 Score=25.32 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+.+.+-. +.++++++ .|.|.|..+.+. .+|. --+.++++++.+.++++|+.+.+
T Consensus 271 e~a~~La-~~l~~l~~-~VnLIPynp~~~--~~~~----------~ps~e~i~~f~~~L~~~Gi~vtv 324 (345)
T PRK14457 271 EHAEELA-NLLRGFQS-HVNLIPYNPIDE--VEFQ----------RPSPKRIQAFQRVLEQRGVAVSV 324 (345)
T ss_pred HHHHHHH-HHHhcCCC-eEEEecCCCCCC--CCCC----------CCCHHHHHHHHHHHHHCCCeEEE
Confidence 4444444 77788876 799999887542 2232 13468899999999999999864
No 324
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=40.26 E-value=17 Score=33.26 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=55.1
Q ss_pred CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHH--HcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHH
Q psy8670 38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLH--DLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFE 115 (224)
Q Consensus 38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~--~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~ 115 (224)
..+.|.|.|-. .|.. ....+|....+.+ ..+. -=|..-.-|+==+.+...++ +=-||-.++++.|..+||+
T Consensus 26 v~~~v~~rI~~-nf~s---qa~~PFl~tlD~v-Kkv~l~TDGlgQ~vllKGY~~EGHDS--~hpdy~~~~~R~GG~~D~~ 98 (425)
T PF12905_consen 26 VPDLVVYRIAM-NFGS---QAQNPFLRTLDNV-KKVSLATDGLGQSVLLKGYQSEGHDS--AHPDYGNINKRAGGAEDFN 98 (425)
T ss_dssp GGGEEEEEEEE---TT-----SS-HHHHHHHH-HHHHHHHTS-EEEEEEET-BTTSTTS--STT-TT-B-GGGTHHHHHH
T ss_pred cccceEEEecc-chhh---cccChHHHHHHHH-HHHhhhcCCccceEEEeecccCCccC--CCcchhhhccccccHHHHH
Confidence 44677776532 2210 0123555554444 3332 23443333333333332222 3446778999999999999
Q ss_pred HHHHHHHHcCCEEEEecCCCCCCccchhHHhhhc
Q psy8670 116 TLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA 149 (224)
Q Consensus 116 ~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~ 149 (224)
.|+++.|+.|-++=+-+-..-+-.+++.|.+.+.
T Consensus 99 ~L~~~g~~yna~~GvHVNatE~Ypea~~f~~~~~ 132 (425)
T PF12905_consen 99 TLLEEGRKYNAKFGVHVNATEAYPEAKAFNEDLV 132 (425)
T ss_dssp HHHHHHHTTTEEEEEEEESSEE-TTSTT--CCCB
T ss_pred HHHHHHHhhCCeEEEEEcceecCccccccchhhh
Confidence 9999999999888776655444566666665543
No 325
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=40.00 E-value=53 Score=27.28 Aligned_cols=42 Identities=31% Similarity=0.394 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+.+.+ +.++++|+++|.|... + + . +.+++.+.+.++||+|..
T Consensus 16 l~e~~-~~~~e~G~~~vEl~~~---------~--------~---~---~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 16 FLERF-AAAAQAGFTGVEYLFP---------Y--------D---W---DAEALKARLAAAGLEQVL 57 (254)
T ss_pred HHHHH-HHHHHcCCCEEEecCC---------c--------c---C---CHHHHHHHHHHcCCeEEE
Confidence 56667 8889999999998420 0 0 1 244555667789999863
No 326
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=39.98 E-value=60 Score=29.58 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccCCC---------CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPM---------ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~---------~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
..+.+-+ .+|+..|++.-||.|--..-- .+. =-..+-..+|..-|+.+.++++.+.|+++|+..-+|.|
T Consensus 102 ~aVl~~~-~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~-T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAv 179 (386)
T COG1104 102 PAVLNTC-RYLERQGFEVTYLPVDSNGLVDLEQLEEALRPD-TILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAV 179 (386)
T ss_pred HHHHHHH-HHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCC-ceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehh
Confidence 4466777 888777999988887532100 000 01223445688899999999999999999999999987
No 327
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=39.71 E-value=45 Score=31.54 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCCcc--chhHH
Q psy8670 112 KDFETLKERLHALGIKILLDFVPNHTSNQ--HEWFK 145 (224)
Q Consensus 112 ~~~~~lv~~~h~~gi~vilD~v~nh~~~~--~~w~~ 145 (224)
++++++-+.|+.+||++|-|+.+- ++.+ ..|..
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~-v~~dsaDvWa~ 246 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVF-VAYDSADVWAD 246 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcce-eCCCcHHHHhC
Confidence 467888888999999999999984 4433 34544
No 328
>PLN02651 cysteine desulfurase
Probab=39.64 E-value=29 Score=30.55 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=27.4
Q ss_pred CcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 103 SFEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 103 ~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.++..-|...+++++.+.||++|+.+++|.+-
T Consensus 146 ~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 146 AVNNEIGVIQPVEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred CCCCCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 34555788899999999999999999999874
No 329
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=39.63 E-value=38 Score=24.36 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q psy8670 106 PLFGDLKDFETLKERLHALGIKILLD 131 (224)
Q Consensus 106 ~~~G~~~~~~~lv~~~h~~gi~vilD 131 (224)
|---+.++.++|++.++++|..+++.
T Consensus 94 P~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 94 PLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp SSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 33457899999999999999998874
No 330
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=39.58 E-value=27 Score=26.19 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 113 DFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 113 ~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+++++.+.||++|+.+++|-...-..
T Consensus 110 ~~~~l~~~~~~~~~~li~D~a~~~~~ 135 (170)
T cd01494 110 PLKEIRKIAKEYGILLLVDAASAGGA 135 (170)
T ss_pred CHHHHHHHHHHcCCEEEEeccccccc
Confidence 44888889999999999998765433
No 331
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=39.47 E-value=17 Score=32.02 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=31.5
Q ss_pred CCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 96 Y~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
....-+..++..-|...+++++.+.||++|.-+++|.+-
T Consensus 140 ~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~ 178 (371)
T PF00266_consen 140 TRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQ 178 (371)
T ss_dssp ESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TT
T ss_pred cceEEeecccccccEEeeeceehhhhhccCCceeEechh
Confidence 345556667777888889999999999999999999973
No 332
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.43 E-value=2.5e+02 Score=25.40 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=44.6
Q ss_pred eEEE-EecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHH
Q psy8670 42 VFYH-LYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKER 120 (224)
Q Consensus 42 viY~-i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~ 120 (224)
++++ +....++| +.+.+.+-. +.++++++ .|.|.|..+.+. .+| . --+.++++++.+.
T Consensus 263 I~irypLIpGvND-------s~e~a~~La-~ll~~l~~-~VnLIPYN~~~~--~~~-----~-----~ps~e~v~~f~~~ 321 (372)
T PRK11194 263 VTVEYVMLDHVND-------GTEHAHQLA-ELLKDTPC-KINLIPWNPFPG--APY-----G-----RSSNSRIDRFSKV 321 (372)
T ss_pred EEEEEEeECCCCC-------CHHHHHHHH-HHHhcCCc-eEEEecCCCCCC--CCC-----C-----CCCHHHHHHHHHH
Confidence 4443 33566655 334444444 77788875 999999886542 222 1 1346788999999
Q ss_pred HHHcCCEEEE
Q psy8670 121 LHALGIKILL 130 (224)
Q Consensus 121 ~h~~gi~vil 130 (224)
++++|+.|.+
T Consensus 322 L~~~Gi~vti 331 (372)
T PRK11194 322 LMEYGFTVIV 331 (372)
T ss_pred HHHCCCeEEE
Confidence 9999999976
No 333
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=39.39 E-value=82 Score=28.33 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
|..-+++++++.||++|+.+|+|-+..
T Consensus 152 G~i~~l~~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 152 GTLAPLKELVALKEEFHYRLILDESFS 178 (392)
T ss_pred CcccCHHHHHHHHHHcCCEEEEECccc
Confidence 333448899999999999999999875
No 334
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=39.39 E-value=14 Score=35.82 Aligned_cols=52 Identities=25% Similarity=0.569 Sum_probs=35.9
Q ss_pred hhcccCCCcceeecccccCC-------------CCCCCCcchhhHH----------HHHHHhhcccCCCCCcHHH
Q psy8670 161 ARLHDLGVGAVWISPIFKSP-------------MADFGYDISDYLR----------IKILLDFVPNHTSNQHEWF 212 (224)
Q Consensus 161 ~~~~~lG~~~~w~~p~f~~~-------------~~dlny~n~d~~~----------i~ii~d~v~nh~~~~~~W~ 212 (224)
.+.+++|++.+=++|+-.-+ -|.-.|-+||-++ |-||||.|+||.+.+-.-+
T Consensus 172 pYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L 246 (628)
T COG0296 172 PYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYL 246 (628)
T ss_pred HHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchh
Confidence 44678999999999884332 1344555666554 6799999999988754433
No 335
>PRK09989 hypothetical protein; Provisional
Probab=39.37 E-value=89 Score=26.08 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+.+.+ +.++++||++|.|.-. .+ + + .+++.+.+.++||++..
T Consensus 17 l~~~l-~~~~~~Gfd~VEl~~~-------~~-----~--------~---~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERF-AAARKAGFDAVEFLFP-------YD-----Y--------S---TLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHH-HHHHHcCCCEEEECCc-------cc-----C--------C---HHHHHHHHHHcCCcEEE
Confidence 56677 8899999999999421 11 1 1 34566667789999874
No 336
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=39.35 E-value=72 Score=28.57 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
-|+..+++++.+.|+++|+-+++|-+-
T Consensus 190 ~G~~~~l~~i~~l~~~~~~~livDea~ 216 (406)
T PRK13393 190 DGDIAPIAEICDVAEKHGAMTYLDEVH 216 (406)
T ss_pred CCchhCHHHHHHHHHHcCCEEEEECCc
Confidence 356666999999999999999999874
No 337
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.34 E-value=27 Score=30.17 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHHcC--CCeEEEcCcccCCC----CCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 61 DLKGMIEKLPEHLHDLG--VGAVWISPIFKSPM----ADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~~----~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
+-+.+.+-+ +.+++.| +++|+|=.-+.... ...+|. + ++.|+ +|. +.++|++++|++|+|+++-+.
T Consensus 23 s~~ev~~v~-~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~--~-ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 23 SDEEYLALM-DRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT--G-YSWNRKLFP---DPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred CHHHHHHHH-HHHHHhCCCccEEEEecccccccccccccCCcc--e-eEEChhcCC---CHHHHHHHHHHCCCEEEEEeC
Confidence 345565555 6667644 56777632221110 001221 2 35564 465 558999999999999999887
Q ss_pred CC
Q psy8670 134 PN 135 (224)
Q Consensus 134 ~n 135 (224)
+.
T Consensus 96 P~ 97 (292)
T cd06595 96 PA 97 (292)
T ss_pred CC
Confidence 75
No 338
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=39.22 E-value=88 Score=26.42 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEec
Q psy8670 111 LKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~ 132 (224)
.++.++||+.+.+.|..|+-.+
T Consensus 118 ~eek~~lIe~a~d~Gf~vlsEv 139 (258)
T COG1809 118 TEEKCRLIERAVDEGFMVLSEV 139 (258)
T ss_pred hHHHHHHHHHHHhcccEEehhh
Confidence 4788888888888888886544
No 339
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=39.15 E-value=2.6e+02 Score=24.28 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=30.8
Q ss_pred EEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCc
Q psy8670 43 FYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPI 86 (224)
Q Consensus 43 iY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi 86 (224)
|..+.|+||+++.. ..+++.+.++. ..+-+-|.+.|=+..-
T Consensus 20 IlNvTpDSFsdgg~--~~~~~~a~~~a-~~~~~~GAdIIDIGge 60 (282)
T PRK11613 20 ILNVTPDSFSDGGT--HNSLIDAVKHA-NLMINAGATIIDVGGE 60 (282)
T ss_pred EEcCCCCCCCCCCC--CCCHHHHHHHH-HHHHHCCCcEEEECCC
Confidence 33455999987432 24788899998 8888999999988753
No 340
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=39.07 E-value=44 Score=30.99 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEec
Q psy8670 110 DLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
++++++++.+.|+++|+.||.|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 36899999999999999999997
No 341
>PRK08445 hypothetical protein; Provisional
Probab=39.05 E-value=51 Score=29.40 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 106 PLFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 106 ~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
|.--+.++..+.++.||+.||++-.-+.+.|...
T Consensus 176 pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et 209 (348)
T PRK08445 176 PKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVEN 209 (348)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCC
Confidence 5556677888999999999999999999998643
No 342
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=38.88 E-value=38 Score=29.42 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+.++++++++.|+++|+.||+|-+.-...
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 171 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEAFIDFT 171 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECcccccC
Confidence 46899999999999999999999875443
No 343
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=38.78 E-value=1e+02 Score=28.76 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
...+....+.+ +-+|+||+++--++=-++.-.. .|.. .+|+ ...+=.++||+++.++||+.|+.+. |-
T Consensus 50 ~d~Y~ry~eDi-~L~~~lG~~~yRfSIsWsRI~P-~G~g-----~vN~--~gl~~Y~~lid~l~~~GI~P~VTL~--H~- 117 (469)
T PRK13511 50 SDFYHRYPEDL-KLAEEFGVNGIRISIAWSRIFP-DGYG-----EVNP--KGVEYYHRLFAECHKRHVEPFVTLH--HF- 117 (469)
T ss_pred cchhhhhHHHH-HHHHHhCCCEEEeeccHhhcCc-CCCC-----CcCH--HHHHHHHHHHHHHHHcCCEEEEEec--CC-
Confidence 34567778888 9999999999988744433111 1111 1222 3456688999999999999998873 43
Q ss_pred ccchhHH
Q psy8670 139 NQHEWFK 145 (224)
Q Consensus 139 ~~~~w~~ 145 (224)
.-..|+.
T Consensus 118 dlP~~L~ 124 (469)
T PRK13511 118 DTPEALH 124 (469)
T ss_pred CCcHHHH
Confidence 3344554
No 344
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=38.77 E-value=71 Score=27.72 Aligned_cols=66 Identities=24% Similarity=0.205 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHHcCC--CeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 59 VGDLKGMIEKLPEHLHDLGV--GAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~--~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
.-++..+.+.+ +..+.-+. ..|++..++ ++ -|. .=+.++++++++.|.++|+-||.|-+..-
T Consensus 129 ~~d~~~l~~~l-~~~~~~~~~~~~v~~~~p~-nP---tG~-----------~~~~~~l~~l~~~~~~~~~~ii~De~y~~ 192 (363)
T PF00155_consen 129 HLDPEALEEAL-DELPSKGPRPKAVLICNPN-NP---TGS-----------VLSLEELRELAELAREYNIIIIVDEAYSD 192 (363)
T ss_dssp EETHHHHHHHH-HTSHTTTETEEEEEEESSB-TT---TTB-----------B--HHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred ccccccccccc-ccccccccccceeeecccc-cc---ccc-----------ccccccccchhhhhcccccceeeeeceec
Confidence 35778888877 76665554 556554332 22 221 11468999999999999999999999876
Q ss_pred CCcc
Q psy8670 137 TSNQ 140 (224)
Q Consensus 137 ~~~~ 140 (224)
...+
T Consensus 193 ~~~~ 196 (363)
T PF00155_consen 193 LIFG 196 (363)
T ss_dssp GBSS
T ss_pred cccC
Confidence 6554
No 345
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=38.44 E-value=99 Score=25.82 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
.+.+...+..+|.+...+.+..........-...|..-+=..-|.-.+..+.++.||++|+++|.
T Consensus 15 a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~ 79 (268)
T TIGR00393 15 GKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIA 79 (268)
T ss_pred HHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEE
Confidence 34443567788999887765322110000011222222223347789999999999999999864
No 346
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=38.33 E-value=58 Score=28.07 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCc
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPI 86 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi 86 (224)
.||-+.+.++| ..++++|++.+.+.|.
T Consensus 233 ~Gtp~ev~e~l-~~~~~aGvd~l~l~~~ 259 (278)
T TIGR03620 233 WGDADTVAARV-REHLDAGADHVAVQVL 259 (278)
T ss_pred eCCHHHHHHHH-HHHHhCCCCEEEEEec
Confidence 58999999999 8999999999999885
No 347
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=38.27 E-value=49 Score=29.50 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~ 145 (224)
.+.++++.+.|+++|+-+|+|-|....+....++.
T Consensus 207 ~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~ 241 (401)
T PRK00854 207 AGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLA 241 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhH
Confidence 45799999999999999999999876666555543
No 348
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=38.25 E-value=35 Score=29.34 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEec
Q psy8670 110 DLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
+.++++++++.||++|+-+++|-
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDe 166 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDG 166 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeech
Confidence 57899999999999999999995
No 349
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=38.22 E-value=1.4e+02 Score=26.39 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC----CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHc--CCEEEEecC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM----ADFGYDISDYLSFEPLFGDLKDFETLKERLHAL--GIKILLDFV 133 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~----~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~--gi~vilD~v 133 (224)
-+++.+.+.+ ..+.++|+.+|.|-|+-+... .+..|++.. -+++-+++.++. .+-||.|+.
T Consensus 58 ~s~d~l~~~~-~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~g------------ivqravr~ik~~~p~l~iitDvc 124 (330)
T COG0113 58 YSLDRLVEEA-EELVDLGIPAVILFGVPDDSKKDETGSEAYDPDG------------IVQRAVRAIKEAFPELVVITDVC 124 (330)
T ss_pred ccHHHHHHHH-HHHHhcCCCEEEEeCCCcccccCcccccccCCCC------------hHHHHHHHHHHhCCCeEEEeeec
Confidence 3688888889 999999999999999874321 122222222 244455555532 789999998
Q ss_pred CC
Q psy8670 134 PN 135 (224)
Q Consensus 134 ~n 135 (224)
+.
T Consensus 125 Lc 126 (330)
T COG0113 125 LC 126 (330)
T ss_pred cc
Confidence 64
No 350
>PRK05968 hypothetical protein; Provisional
Probab=38.20 E-value=47 Score=29.87 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.+...+++++.+.||++|+.|++|-..
T Consensus 160 ~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 160 VFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 566799999999999999999999864
No 351
>PLN02814 beta-glucosidase
Probab=37.94 E-value=1.2e+02 Score=28.72 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
..+....+.+ +-+|+||+++--++=-++.-.. .|-. .+|+ ...+=.++||++|.++||+.|+-+- |- .
T Consensus 74 D~Yhry~EDI-~L~k~lG~~ayRfSIsWsRI~P-~G~g-----~~N~--~Gl~fY~~lId~l~~~GI~P~VTL~--H~-d 141 (504)
T PLN02814 74 DGYHKYKEDV-KLMAEMGLESFRFSISWSRLIP-NGRG-----LINP--KGLLFYKNLIKELRSHGIEPHVTLY--HY-D 141 (504)
T ss_pred cHHHhhHHHH-HHHHHcCCCEEEEeccHhhcCc-CCCC-----CCCH--HHHHHHHHHHHHHHHcCCceEEEec--CC-C
Confidence 3567777888 9999999999988743332111 1100 1222 3456678999999999999998763 44 2
Q ss_pred cchhHHh
Q psy8670 140 QHEWFKK 146 (224)
Q Consensus 140 ~~~w~~~ 146 (224)
-..|+.+
T Consensus 142 lP~~L~~ 148 (504)
T PLN02814 142 LPQSLED 148 (504)
T ss_pred CCHHHHH
Confidence 2445543
No 352
>KOG0256|consensus
Probab=37.91 E-value=46 Score=30.66 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHHcCC--CeEEEc-CcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 60 GDLKGMIEKLPEHLHDLGV--GAVWIS-PIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~--~~i~l~-Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
-|-+.+++.+ ...+++|. .+|.++ |-.+ .| . . =+++++..|++=|.+++|.||.|-++--
T Consensus 208 itv~alE~A~-~~A~~~~~kVkGvlitNPsNP-----LG-~-----~-----~~~e~L~~ll~Fa~~kniHvI~DEIya~ 270 (471)
T KOG0256|consen 208 ITVEALEAAL-NQARKLGLKVKGVLITNPSNP-----LG-T-----T-----LSPEELISLLNFASRKNIHVISDEIYAG 270 (471)
T ss_pred ccHHHHHHHH-HHHHHhCCceeEEEEeCCCCC-----CC-C-----c-----cCHHHHHHHHHHHhhcceEEEeehhhcc
Confidence 4677788877 66666554 455443 3221 22 0 1 1369999999999999999999998765
Q ss_pred CCccchhHHhhh
Q psy8670 137 TSNQHEWFKKSL 148 (224)
Q Consensus 137 ~~~~~~w~~~~~ 148 (224)
+-=+.+=|...+
T Consensus 271 sVF~~~~F~Sv~ 282 (471)
T KOG0256|consen 271 SVFDKSEFRSVL 282 (471)
T ss_pred cccCccCceEHH
Confidence 443333444443
No 353
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=37.84 E-value=1e+02 Score=28.83 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
..+....+.+ +-+|+||+++--++=-++.-.. .|..- .+| -...+=.++||++|.++||+.|+-+
T Consensus 64 D~Yhry~eDi-~Lm~~lG~~~yRfSIsWsRI~P-~G~~~----~~N--~~gl~~Y~~lid~L~~~GI~P~VTL 128 (476)
T PRK09589 64 DFYHRYKEDI-ALFAEMGFKCFRTSIAWTRIFP-QGDEL----EPN--EEGLQFYDDLFDECLKQGIEPVVTL 128 (476)
T ss_pred cHHHhhHHHH-HHHHHcCCCEEEeccchhhcCc-CCCCC----CCC--HHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4577788888 9999999999988643322100 11100 111 1234557899999999999999877
No 354
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=37.82 E-value=47 Score=24.76 Aligned_cols=22 Identities=5% Similarity=0.235 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEEE
Q psy8670 109 GDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vil 130 (224)
.+.+|++++++.|+++|+++.+
T Consensus 8 ~s~~ev~~~v~~a~~~~~~v~~ 29 (139)
T PF01565_consen 8 KSVEEVQAIVKFANENGVPVRV 29 (139)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEE
Confidence 4689999999999999999965
No 355
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=37.77 E-value=67 Score=24.44 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q psy8670 111 LKDFETLKERLHALGIKILL 130 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vil 130 (224)
.+.+++++++|++.|++|.+
T Consensus 154 ~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 154 EEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp HHHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 57899999999999998853
No 356
>PRK08636 aspartate aminotransferase; Provisional
Probab=37.70 E-value=1.3e+02 Score=26.98 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+.++++++++.|+++++-||.|=++....
T Consensus 193 s~~~~~~l~~~a~~~~~~II~De~Y~~l~ 221 (403)
T PRK08636 193 EKSFYERLVALAKKERFYIISDIAYADIT 221 (403)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccchhhc
Confidence 46899999999999999999999877543
No 357
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=37.64 E-value=32 Score=30.78 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.|...+++++++.||++|+.+|+|-.+
T Consensus 149 tg~~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 149 LMVEFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred CCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 366679999999999999999999985
No 358
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=37.50 E-value=56 Score=29.21 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEc-CcccC------------------CCCCC-------CCCccCCCCcCCC-CCCHH
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWIS-PIFKS------------------PMADF-------GYDISDYLSFEPL-FGDLK 112 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~-Pi~~~------------------~~~~~-------gY~~~d~~~v~~~-~G~~~ 112 (224)
.|.++-.+++ ..|.+.|++.|-++ |=.++ -..++ -+. .|=..|||- +|..+
T Consensus 33 ~Dv~aTv~QI-~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g-~~k~RINPGNig~~~ 110 (361)
T COG0821 33 ADVEATVAQI-KALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECG-VDKVRINPGNIGFKD 110 (361)
T ss_pred ccHHHHHHHH-HHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcC-cceEEECCcccCcHH
Confidence 4788889999 99999999999986 21111 00000 011 455678886 78899
Q ss_pred HHHHHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670 113 DFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 113 ~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~ 145 (224)
.|++++++|+++|+-+=+- .||-|-+-....
T Consensus 111 ~v~~vVe~Ak~~g~piRIG--VN~GSLek~~~~ 141 (361)
T COG0821 111 RVREVVEAAKDKGIPIRIG--VNAGSLEKRLLE 141 (361)
T ss_pred HHHHHHHHHHHcCCCEEEe--cccCchhHHHHH
Confidence 9999999999999877544 477665544443
No 359
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.46 E-value=2.6e+02 Score=25.18 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=42.2
Q ss_pred EecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcC
Q psy8670 46 LYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALG 125 (224)
Q Consensus 46 i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~g 125 (224)
+....++| +.+.+.+-. +.++.+++ .|.|.|..+.+. ..| .. -+.+.++++.+.+.++|
T Consensus 269 vLI~GvND-------s~e~a~~La-~llk~l~~-~VnLIPyn~~~~--~~~-----~~-----ps~e~i~~f~~~l~~~g 327 (356)
T PRK14462 269 LVIKDVND-------DLKSAKKLV-KLLNGIKA-KVNLILFNPHEG--SKF-----ER-----PSLEDMIKFQDYLNSKG 327 (356)
T ss_pred EEECCCCC-------CHHHHHHHH-HHHhhcCc-EEEEEeCCCCCC--CCC-----CC-----CCHHHHHHHHHHHHHCC
Confidence 34566655 334444444 77888875 899999886542 222 11 23578888888899999
Q ss_pred CEEEE
Q psy8670 126 IKILL 130 (224)
Q Consensus 126 i~vil 130 (224)
+.|.+
T Consensus 328 i~vtv 332 (356)
T PRK14462 328 LLCTI 332 (356)
T ss_pred CcEEE
Confidence 98865
No 360
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=37.46 E-value=92 Score=27.23 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHcCCEE
Q psy8670 110 DLKDFETLKERLHALGIKI 128 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~v 128 (224)
+.+++.++++.++++|+.+
T Consensus 167 n~~ei~~l~~~~~~~gv~~ 185 (334)
T TIGR02666 167 NDDEIVDLAEFAKERGVTL 185 (334)
T ss_pred CHHHHHHHHHHHHhcCCeE
Confidence 4577888888888888765
No 361
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=37.32 E-value=32 Score=17.86 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHcCCC
Q psy8670 62 LKGMIEKLPEHLHDLGVG 79 (224)
Q Consensus 62 l~~~~~~l~~~l~~lG~~ 79 (224)
-+.+..++ ++|+++|++
T Consensus 15 ~~~l~~~~-~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKV-EFLKELGFS 31 (31)
T ss_pred HHHhhHHH-HHHHHcCCC
Confidence 46677888 999999985
No 362
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=37.29 E-value=2e+02 Score=25.60 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHH--cCCEEEEecCCC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHA--LGIKILLDFVPN 135 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~--~gi~vilD~v~n 135 (224)
+++.+.+.+ ..+.++|+++|.|-|+ +......|- .+.||. | =+.+-++++++ -.|-||.|+.+.
T Consensus 57 s~d~l~~~v-~~~~~~Gi~av~LFgv-~~~Kd~~gs-----~A~~~~-g---~v~rair~iK~~~p~l~vi~DVcLc 122 (323)
T PRK09283 57 SIDLLVKEA-EEAVELGIPAVALFGV-PELKDEDGS-----EAYNPD-G---LVQRAIRAIKKAFPELGVITDVCLD 122 (323)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeCc-CCCCCcccc-----cccCCC-C---HHHHHHHHHHHhCCCcEEEEeeecc
Confidence 688899999 9999999999999999 322111110 122221 2 24444444444 479999999875
No 363
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=37.22 E-value=42 Score=30.40 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTSNQH 141 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~ 141 (224)
+.++++++++.|.++|+-||.|-++.+..-+.
T Consensus 181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 181 SKEELKAIVELAREHDIIIISDEIYEELVYDG 212 (393)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhcccCC
Confidence 47999999999999999999999999877654
No 364
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=37.17 E-value=1.1e+02 Score=28.45 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
...+....+.+ .-+++||+++--++=-++.-.. .|.. .+|+ ...+=.++|++++.++||+.|+-+ .|-
T Consensus 49 ~d~yhry~eDi-~L~~~lG~~~yRfSIsWsRI~P-~g~~-----~~N~--~gl~~Y~~lid~l~~~GI~P~VTL--~H~- 116 (467)
T TIGR01233 49 SDFYHKYPVDL-ELAEEYGVNGIRISIAWSRIFP-TGYG-----EVNE--KGVEFYHKLFAECHKRHVEPFVTL--HHF- 116 (467)
T ss_pred CchhhhHHHHH-HHHHHcCCCEEEEecchhhccC-CCCC-----CcCH--HHHHHHHHHHHHHHHcCCEEEEec--cCC-
Confidence 34567778888 9999999999988743332111 1111 1221 335568899999999999999876 353
Q ss_pred ccchhHH
Q psy8670 139 NQHEWFK 145 (224)
Q Consensus 139 ~~~~w~~ 145 (224)
.-..|+.
T Consensus 117 dlP~~L~ 123 (467)
T TIGR01233 117 DTPEALH 123 (467)
T ss_pred CCcHHHH
Confidence 2334554
No 365
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=37.13 E-value=71 Score=28.33 Aligned_cols=62 Identities=13% Similarity=0.241 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC----CCCCCccCCCCcCCCCCCHHHHHHHHHHHHH--cCCEEEEecCC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA----DFGYDISDYLSFEPLFGDLKDFETLKERLHA--LGIKILLDFVP 134 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~----~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~--~gi~vilD~v~ 134 (224)
+++.+.+.+ +.+.++|+++|.|-|+.+.... +..|++.+ =+.+.++++++ -.|-||.|+.+
T Consensus 55 sid~l~~~v-~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g------------~v~~air~iK~~~pdl~vi~Dvcl 121 (324)
T PF00490_consen 55 SIDSLVKEV-EEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDG------------LVQRAIRAIKKAFPDLLVITDVCL 121 (324)
T ss_dssp EHHHHHHHH-HHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTS------------HHHHHHHHHHHHSTTSEEEEEE-S
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEEeeCCcccCCcchhcccCCCC------------hHHHHHHHHHHhCCCcEEEEeccc
Confidence 678899999 9999999999999998533211 11122221 24444444443 36999999987
Q ss_pred C
Q psy8670 135 N 135 (224)
Q Consensus 135 n 135 (224)
.
T Consensus 122 c 122 (324)
T PF00490_consen 122 C 122 (324)
T ss_dssp T
T ss_pred c
Confidence 5
No 366
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=37.10 E-value=2e+02 Score=22.36 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEcCcc-cCCCCCCCCCccCCCCcCCCC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 62 LKGMIEKLPEHLHDLGVGAVWISPIF-KSPMADFGYDISDYLSFEPLF-GDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 62 l~~~~~~l~~~l~~lG~~~i~l~Pi~-~~~~~~~gY~~~d~~~v~~~~-G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
++.+.+.+ +..+.+|+..+.+.|-. ..... ...+..+ -..+-|+++++.|.++|+++.+--.......
T Consensus 70 ~~~~~~~i-~~a~~lg~~~i~~~~g~~~~~~~---------~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~ 139 (213)
T PF01261_consen 70 LEYLKKAI-DLAKRLGAKYIVVHSGRYPSGPE---------DDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSE 139 (213)
T ss_dssp HHHHHHHH-HHHHHHTBSEEEEECTTESSSTT---------SSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSS
T ss_pred HHHHHHHH-HHHHHhCCCceeecCcccccccC---------CCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCcccc
Confidence 56666667 99999999999887641 00000 0000001 0135688999999999999999876666553
Q ss_pred cc---hhHHhhh
Q psy8670 140 QH---EWFKKSL 148 (224)
Q Consensus 140 ~~---~w~~~~~ 148 (224)
.. ..+.+.+
T Consensus 140 ~~~~~~~~~~~l 151 (213)
T PF01261_consen 140 TPFSVEEIYRLL 151 (213)
T ss_dssp EESSHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 33 4444444
No 367
>PRK09776 putative diguanylate cyclase; Provisional
Probab=36.75 E-value=75 Score=32.22 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCC--------ccCCCCcCCCCC--------CHHHHHHHHHHHHH
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYD--------ISDYLSFEPLFG--------DLKDFETLKERLHA 123 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~--------~~d~~~v~~~~G--------~~~~~~~lv~~~h~ 123 (224)
.+...+.+.+ ..|+++||.-- |-- . ..||+ +.|+-++|..|- ...-++.+++.||+
T Consensus 971 ~~~~~~~~~~-~~l~~~G~~~~-ldd---f---g~g~~~~~~l~~~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~ 1042 (1092)
T PRK09776 971 NHAESASRLV-QKLRLAGCRVV-LSD---F---GRGLSSFNYLKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQR 1042 (1092)
T ss_pred cCHHHHHHHH-HHHHHCCcEEE-EcC---C---CCCchHHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHH
Confidence 3566777778 99999999543 321 1 12333 567778886652 23458889999999
Q ss_pred cCCEEEEecCCC
Q psy8670 124 LGIKILLDFVPN 135 (224)
Q Consensus 124 ~gi~vilD~v~n 135 (224)
.|++||..-|=+
T Consensus 1043 ~~~~~iaegVEt 1054 (1092)
T PRK09776 1043 LGMKTIAGPVEL 1054 (1092)
T ss_pred cCCcEEecccCC
Confidence 999999987643
No 368
>PRK14012 cysteine desulfurase; Provisional
Probab=36.75 E-value=46 Score=29.80 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=26.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 104 FEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 104 v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
++...|...+++++.+.||++|+.|++|-+-
T Consensus 153 ~~n~tG~~~~~~~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 153 VNNEIGVIQDIAAIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred cCCCccchhhHHHHHHHHHHcCCEEEEEcch
Confidence 3444688899999999999999999999874
No 369
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=36.66 E-value=97 Score=30.39 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccCC-CCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQH 141 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~ 141 (224)
..+.+.+ ..+|++|+|++.+..+.=+- .... ...|| +.. |.. +++.|++.|+.||+==.+ ++.-.
T Consensus 30 ~~w~ddl-~~mk~~G~N~V~ig~faW~~~eP~e--G~fdf-------~~~-D~~-~l~~a~~~Gl~vil~t~P--~g~~P 95 (673)
T COG1874 30 ETWMDDL-RKMKALGLNTVRIGYFAWNLHEPEE--GKFDF-------TWL-DEI-FLERAYKAGLYVILRTGP--TGAPP 95 (673)
T ss_pred HHHHHHH-HHHHHhCCCeeEeeeEEeeccCccc--cccCc-------ccc-hHH-HHHHHHhcCceEEEecCC--CCCCc
Confidence 6678888 99999999999987764221 0111 12333 333 334 899999999999986644 45555
Q ss_pred hhHH
Q psy8670 142 EWFK 145 (224)
Q Consensus 142 ~w~~ 145 (224)
.|+.
T Consensus 96 ~Wl~ 99 (673)
T COG1874 96 AWLA 99 (673)
T ss_pred hHHh
Confidence 6655
No 370
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=36.65 E-value=1.6e+02 Score=26.49 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
+-+.+.+.. ..+++.|+..+.=....+.. ..| +|.. +| .++++.|.+.|++.||.++.++
T Consensus 130 ~~~~~~~~A-~~lk~~g~~~~r~~~~kpRt---sp~---~f~g----~~-~e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 130 SYEQVEAVA-KALKAKGLKLLRGGAFKPRT---SPY---DFQG----LG-VEGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred CHHHHHHHH-HHHHHcCCcEEEccccCCCC---CCc---cccC----CC-HHHHHHHHHHHHHcCCCEEEee
Confidence 455566666 88899998766533222111 112 2211 22 5899999999999999999876
No 371
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=36.47 E-value=54 Score=29.50 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCc-------------------ccCCCCCCCC------CccCCCCcCCC-CCC-H
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPI-------------------FKSPMADFGY------DISDYLSFEPL-FGD-L 111 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi-------------------~~~~~~~~gY------~~~d~~~v~~~-~G~-~ 111 (224)
..+.+.-.+++ ..|.+.|++-|-+.=. ...-..+... +-.|=..|||- +|+ .
T Consensus 38 T~Dv~atv~Qi-~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~ 116 (360)
T PRK00366 38 TADVEATVAQI-KRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPGNIGKRD 116 (360)
T ss_pred chhHHHHHHHH-HHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCchH
Confidence 35788888899 9999999999998622 1110000000 01233367775 788 8
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670 112 KDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 112 ~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~ 145 (224)
+.|++++++|+++|+.+=+= .||-|-+.....
T Consensus 117 ~~v~~vv~~ak~~~ipIRIG--vN~GSL~~~~~~ 148 (360)
T PRK00366 117 ERVREVVEAAKDYGIPIRIG--VNAGSLEKDLLE 148 (360)
T ss_pred HHHHHHHHHHHHCCCCEEEe--cCCccChHHHHH
Confidence 99999999999999876444 477665544433
No 372
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=36.45 E-value=1.1e+02 Score=29.38 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=54.0
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCC---CCC---CccCCCCcCCCC-----C
Q psy8670 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD---FGY---DISDYLSFEPLF-----G 109 (224)
Q Consensus 41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~---~gY---~~~d~~~v~~~~-----G 109 (224)
..+.|+....+ ..+...+.+.+ ..|+++||. |.|-=+-. +..+ ..- -+.|+-++|..| +
T Consensus 524 ~l~lEi~E~~~-------~~~~~~~~~~~-~~l~~~G~~-ialDdfG~-g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~ 593 (660)
T PRK11829 524 QLLLEITETAQ-------IQDLDEALRLL-RELQGLGLL-IALDDFGI-GYSSLRYLNHLKSLPIHMIKLDKSFVKNLPE 593 (660)
T ss_pred hEEEEEcCchh-------hcCHHHHHHHH-HHHHhCCCE-EEEECCCC-chhhHHHHhccCCCCCcEEEECHHHHhcccC
Confidence 45666655443 34667777778 999999996 43322111 1011 112 456777777654 3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
+..-++.++..||..|++||..-|=+
T Consensus 594 ~~~~~~~i~~~a~~l~~~viaegVEt 619 (660)
T PRK11829 594 DDAIARIISCVSDVLKVRVMAEGVET 619 (660)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 44567888889999999999998754
No 373
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=36.39 E-value=43 Score=30.87 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC
Q psy8670 111 LKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v 133 (224)
+++++++.+.|+++|+.||.|-.
T Consensus 172 ~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 172 MANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred HHHHHHHHHHHHHcCCEEEEEch
Confidence 68999999999999999999998
No 374
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=36.34 E-value=1.8e+02 Score=25.13 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHH----HHHHHHHHHHcCCEEEEecCCCC
Q psy8670 64 GMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKD----FETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 64 ~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~----~~~lv~~~h~~gi~vilD~v~nh 136 (224)
.+++.+++.+++.|+++|-| =+| .+.+ .+.+. +++|-+++|++|..+.+.+....
T Consensus 91 ~fi~~iv~~~~~~~~dGidi--D~E--------------~~~~--~d~~~~~~fl~eL~~~l~~~~~~lsv~v~~~~ 149 (298)
T cd06549 91 KFIANIAAYLERNQADGIVL--DFE--------------ELPA--DDLPKYVAFLSELRRRLPAQGKQLTVTVPADE 149 (298)
T ss_pred HHHHHHHHHHHHhCCCCEEE--ecC--------------CCCh--hHHHHHHHHHHHHHHHhhhcCcEEEEEecCCC
Confidence 35666668889999999866 111 1111 12334 44555556788999999987654
No 375
>PRK08960 hypothetical protein; Provisional
Probab=36.09 E-value=50 Score=29.31 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
.++++++++.||++|+-+|+|-++.+..
T Consensus 184 ~~~~~~l~~~~~~~~~~li~De~Y~~~~ 211 (387)
T PRK08960 184 RDELAALSQALRARGGHLVVDEIYHGLT 211 (387)
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 6899999999999999999999876543
No 376
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=35.86 E-value=33 Score=31.63 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 107 LFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 107 ~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
..|...+++++.+.||++|+.+|+|-..
T Consensus 167 p~G~v~Dl~~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 167 PQIDVLDIPGVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred CCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 3578889999999999999999999953
No 377
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.73 E-value=71 Score=30.02 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.+++.+.++.+++. |+.+..|+++.+-+...+=|.+.+
T Consensus 290 t~~~~~~~v~~lr~~~~~i~i~~~~IvGfPgET~edf~~Tl 330 (502)
T PRK14326 290 RSERFLGILEKVRAAMPDAAITTDIIVGFPGETEEDFQATL 330 (502)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEEEEEECCCCCHHHHHHHH
Confidence 678999999999995 899999999998887777666554
No 378
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=35.71 E-value=32 Score=30.11 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
|...+++++++.||++|+.+|+|-+..
T Consensus 182 G~~~~l~~i~~ia~~~~~~li~De~~~ 208 (385)
T PRK05958 182 GDLAPLAELVALARRHGAWLLVDEAHG 208 (385)
T ss_pred CCcCCHHHHHHHHHHhCCEEEEECccc
Confidence 556779999999999999999999863
No 379
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=35.71 E-value=1.1e+02 Score=29.01 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 107 LFGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 107 ~~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
..|..++++++.+.|+++|+-+.+|-...
T Consensus 277 ~tGaiDpl~eIa~i~~~~g~~lHVDaA~g 305 (522)
T TIGR03799 277 ETGNIDPLDEMADIAQELGCHFHVDAAWG 305 (522)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEEchhh
Confidence 46778899999999999999999998754
No 380
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=35.70 E-value=1.1e+02 Score=26.00 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
.+.| ..+++-|+.++.|.=++..+. .-+.|.+ .+|| .|.++..+|++.|++|+.
T Consensus 157 LreL-~~~~~~G~ra~vlf~v~r~d~--~~F~P~~--e~Dp------~fa~~l~~A~~~GVev~~ 210 (235)
T COG1489 157 LREL-ERLAKEGYRAVVLFLVLRSDI--TRFSPNR--EIDP------KFAELLREAIKAGVEVLA 210 (235)
T ss_pred HHHH-HHHHHcCCceEEEEEEecCCC--cEECccc--ccCH------HHHHHHHHHHHcCCEEEE
Confidence 3556 788889999999887765432 1122222 3444 677899999999998863
No 381
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=35.70 E-value=91 Score=25.54 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcC-CCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHH
Q psy8670 63 KGMIEKLPEHLHDLG-VGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHA 123 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG-~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~ 123 (224)
+.+.+-. +.++++| +..+.++|+.+.+...|......+.--+..--+.+++.++.+.+.+
T Consensus 174 ~ei~~l~-~~~~~l~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 174 EDIEALA-EFVKTLPNVERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred HHHHHHH-HHHHhCCCCceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 3443333 6666666 4666666665533211110001111111112367788777776654
No 382
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=35.66 E-value=70 Score=28.16 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCccc
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFK 88 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~ 88 (224)
...+..+.+++ ..|+.+||+.+.+.|.-.
T Consensus 68 ~~~Lt~~~~k~-~~l~~~gvd~~~v~~F~~ 96 (304)
T COG0196 68 PTRLTPLREKI-RLLAGYGVDALVVLDFDL 96 (304)
T ss_pred ccccCCHHHHH-HHHHhcCCcEEEEEeCCH
Confidence 34566688899 999999999999998763
No 383
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.63 E-value=2.2e+02 Score=24.37 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
-+-+.+.+-. ..++++|++.+.=. .|. + ..+ +.+|.- +| .+.++.|.+.+++.||.++.|+
T Consensus 26 Es~e~~~~~a-~~~~~~g~~~~r~g-~~k-p-Rts---~~sf~G----~G-~~gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 26 ESYDHIRLAA-SSAKKLGYNYFRGG-AYK-P-RTS---AASFQG----LG-LQGIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEEec-ccC-C-CCC---CcccCC----CC-HHHHHHHHHHHHHcCCCEEEee
Confidence 3444444445 77899999665332 333 1 112 222211 24 5799999999999999999887
No 384
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=35.58 E-value=58 Score=29.87 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhhc
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSLA 149 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~~ 149 (224)
+.+++.+.++.+++. |+.+..|+.+++-+....-|++.++
T Consensus 280 t~~~~~~~v~~ir~~~~~i~i~~d~IvG~PgEt~ed~~~tl~ 321 (438)
T TIGR01574 280 TREWYLNLVRKLRAACPNVSISTDIIVGFPGETEEDFEETLD 321 (438)
T ss_pred CHHHHHHHHHHHHHhCCCCeEeeCEEEeCCCCCHHHHHHHHH
Confidence 578999999999987 8999999999998888777776653
No 385
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=35.39 E-value=2.5e+02 Score=25.06 Aligned_cols=62 Identities=19% Similarity=0.332 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
.-+-+.+.+-. ..+|++|.+.+-- -+|. + ....| +|.- +| .+.++-|.+.+++.||.++.++
T Consensus 103 iEs~e~~~~~A-~~lk~~ga~~~r~-~~fK-p-RTsp~---sf~G----~g-~~gL~~L~~~~~~~Gl~v~tev 164 (335)
T PRK08673 103 VESEEQILEIA-RAVKEAGAQILRG-GAFK-P-RTSPY---SFQG----LG-EEGLKLLAEAREETGLPIVTEV 164 (335)
T ss_pred cCCHHHHHHHH-HHHHHhchhhccC-cEec-C-CCCCc---cccc----cc-HHHHHHHHHHHHHcCCcEEEee
Confidence 34566666666 8889999984322 2222 1 11222 2211 12 7889999999999999999877
No 386
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=35.33 E-value=3.1e+02 Score=24.03 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=49.9
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHH
Q psy8670 40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHD-LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLK 118 (224)
Q Consensus 40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~-lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv 118 (224)
+++|=-.+...|... .+..+++.+.+.+ +|+.+ .|+++|-|..=|.... ..-+-+-+.+++..|+
T Consensus 220 GGvigi~~~~~fl~~--~~~~~~~~~~~hi-~~i~~l~G~dhVgiGsDfdg~~-----------~~~~gl~~~~~~~~l~ 285 (309)
T cd01301 220 GGVIGVNFYPAFLSP--GADATLDDVVRHI-DYIVDLIGIDHVGLGSDFDGIG-----------GTPGGLEDVSDLPNLT 285 (309)
T ss_pred CCEEEEeeeHHHhCC--CCCCCHHHHHHHH-HHHHHhcCCCeEEECcccCCCC-----------CCccccCCHHHHHHHH
Confidence 455544445555432 2346899999999 99888 7999998876553221 1112266789999999
Q ss_pred HHHHHcCC
Q psy8670 119 ERLHALGI 126 (224)
Q Consensus 119 ~~~h~~gi 126 (224)
+++.++|.
T Consensus 286 ~~L~~rG~ 293 (309)
T cd01301 286 AELLERGY 293 (309)
T ss_pred HHHHHcCC
Confidence 99998885
No 387
>PLN02428 lipoic acid synthase
Probab=35.25 E-value=1.7e+02 Score=26.30 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
-+.+++.+-+ +.|+++|++.+-+.....-+. .+..|+ +|=++++|+++-+.+.+.|.+-+.=-++=..|
T Consensus 259 ET~Edv~e~l-~~Lrelgvd~vtigqyL~Ps~--------~h~~v~-~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrss 327 (349)
T PLN02428 259 ETDEEVVQTM-EDLRAAGVDVVTFGQYLRPTK--------RHLPVK-EYVTPEKFEFWREYGEEMGFRYVASGPLVRSS 327 (349)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEeeccccCCCc--------ceeeee-cccCHHHHHHHHHHHHHcCCceEEecCcccch
Confidence 3677788878 889999998887765542211 112222 36788999999999999999877766555444
No 388
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=35.18 E-value=62 Score=30.08 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=46.5
Q ss_pred HHHHHHHHHcC-----CCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670 67 EKLPEHLHDLG-----VGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQH 141 (224)
Q Consensus 67 ~~l~~~l~~lG-----~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~ 141 (224)
+.+..+|.+.. +-++.+=||+-.+ ||-+ -..+=|++|.+.|+++||-+|+|=|-.-+++..
T Consensus 207 ~~~e~~i~~~~~~~~~vAaiI~EpIQgeg----G~~v----------~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG 272 (447)
T COG0160 207 EYIERALFDLEVGPEEVAAIIIEPIQGEG----GIIV----------PPKGFLKALRKLCREHGILLIADEVQTGFGRTG 272 (447)
T ss_pred HHHHHHHHhhcCCCCceeEEEEecccCCC----CCcC----------CCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 33423355555 5677777776432 3221 124669999999999999999999999999888
Q ss_pred hhHH
Q psy8670 142 EWFK 145 (224)
Q Consensus 142 ~w~~ 145 (224)
.||-
T Consensus 273 ~~fa 276 (447)
T COG0160 273 KMFA 276 (447)
T ss_pred cchh
Confidence 8886
No 389
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=35.18 E-value=36 Score=30.65 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.|+..+++++++.||++|+.||+|-..-
T Consensus 159 tg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 159 LLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred cceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 4778899999999999999999998754
No 390
>PRK07179 hypothetical protein; Provisional
Probab=35.05 E-value=1e+02 Score=27.62 Aligned_cols=27 Identities=11% Similarity=0.282 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
|+...++++++.|+++|+.+++|-+..
T Consensus 195 G~i~pl~~I~~l~~~~~~~livDea~~ 221 (407)
T PRK07179 195 GTIAPLADIVDIAEEFGCVLVVDESHS 221 (407)
T ss_pred CccccHHHHHHHHHHcCCEEEEECccc
Confidence 444457788889999999999998853
No 391
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=34.99 E-value=37 Score=30.40 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=27.3
Q ss_pred CcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 103 SFEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 103 ~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.++...|...+++++.+.||++|+.+++|-+-
T Consensus 150 ~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~ 181 (402)
T TIGR02006 150 HVNNEIGVIQDIAAIGEICRERKVFFHVDAAQ 181 (402)
T ss_pred CCCcCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 34455688889999999999999999999984
No 392
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=34.93 E-value=56 Score=28.39 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
-+.++..+.++.||+.||++..-+.+.|..
T Consensus 142 ~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~E 171 (309)
T TIGR00423 142 LSSDEWLEVIKTAHRLGIPTTATMMFGHVE 171 (309)
T ss_pred CCHHHHHHHHHHHHHcCCCceeeEEecCCC
Confidence 367888899999999999999999998764
No 393
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=34.87 E-value=54 Score=29.40 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=38.3
Q ss_pred CCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchh
Q psy8670 77 GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEW 143 (224)
Q Consensus 77 G~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w 143 (224)
.+.+|.+-|+++.... + ..+.+.++++++.|+++|+-+|+|=|....+....+
T Consensus 184 ~~aaiiiep~~~~gg~-----------~---~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~ 236 (403)
T PRK05093 184 HTCAVVVEPIQGEGGV-----------I---PATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDL 236 (403)
T ss_pred CeEEEEEecccCCCCC-----------c---cCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc
Confidence 3667887887654311 0 135689999999999999999999997766555443
No 394
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=34.78 E-value=36 Score=24.71 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCC
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSP 90 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~ 90 (224)
+.+-+ +.+.+.|++.|.+.|++-..
T Consensus 44 i~~~l-~~l~~~G~~~i~lvPl~L~~ 68 (103)
T cd03413 44 LDDVL-AKLKKAGIKKVTLMPLMLVA 68 (103)
T ss_pred HHHHH-HHHHHcCCCEEEEEehhhee
Confidence 34445 67789999999999998764
No 395
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=34.73 E-value=33 Score=30.53 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
|+..+++++++.||++|+.|++|-+
T Consensus 173 ~~~~~~~~I~~l~~~~~~~li~D~a 197 (402)
T cd00378 173 PRPIDFKRFREIADEVGAYLLVDMA 197 (402)
T ss_pred CCCcCHHHHHHHHHhcCCEEEEEcc
Confidence 3444688899999999999999986
No 396
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=34.64 E-value=36 Score=30.54 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.|...+++++++.||++|+.+|+|-..
T Consensus 144 tg~v~dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 144 LQKIVDIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred CCeeecHHHHHHHHHHcCCEEEEECCC
Confidence 566778999999999999999999964
No 397
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=34.61 E-value=1.1e+02 Score=24.63 Aligned_cols=47 Identities=15% Similarity=0.308 Sum_probs=31.6
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+.|++.|+++|.+ .-... . -.-|...+| +++++-+++++.+||++++
T Consensus 21 ~~L~~~Gikgvi~----DlDNT-----L---v~wd~~~~t-pe~~~W~~e~k~~gi~v~v 67 (175)
T COG2179 21 DILKAHGIKGVIL----DLDNT-----L---VPWDNPDAT-PELRAWLAELKEAGIKVVV 67 (175)
T ss_pred HHHHHcCCcEEEE----eccCc-----e---ecccCCCCC-HHHHHHHHHHHhcCCEEEE
Confidence 7899999999954 22110 0 011222333 5899999999999999975
No 398
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=34.53 E-value=32 Score=24.76 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=25.9
Q ss_pred cCCCCcCCC-CCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 99 SDYLSFEPL-FGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 99 ~d~~~v~~~-~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
.|+..+++. .|+..+.+++++.|+++|+.++.--
T Consensus 19 ~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~ 53 (111)
T PF13378_consen 19 VDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHS 53 (111)
T ss_dssp CSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBS
T ss_pred CCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecC
Confidence 355556643 5899999999999999999987743
No 399
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=34.46 E-value=97 Score=25.87 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKI 128 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~v 128 (224)
+.+.+ +.++++||++|.|...+... .+++.+.+.++||++
T Consensus 17 l~~~l-~~~a~~Gf~~VEl~~~~~~~-----------------------~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 17 FLARF-EKAAQCGFRGVEFMFPYDYD-----------------------IEELKQVLASNKLEH 56 (258)
T ss_pred HHHHH-HHHHHhCCCEEEEcCCCCCC-----------------------HHHHHHHHHHcCCcE
No 400
>TIGR03586 PseI pseudaminic acid synthase.
Probab=34.44 E-value=1.6e+02 Score=26.21 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC----CCCCCCCccC-CCCcCCCC-------CCHHHHHHHHHHHHHcCC
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP----MADFGYDISD-YLSFEPLF-------GDLKDFETLKERLHALGI 126 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~----~~~~gY~~~d-~~~v~~~~-------G~~~~~~~lv~~~h~~gi 126 (224)
.|+++-..+-+ +..++.|.++|=+.-..... .....|...+ .+.-.+.| =+.+++++|.+.|++.||
T Consensus 13 ~G~~~~A~~lI-~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi 91 (327)
T TIGR03586 13 NGSLERALAMI-EAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGL 91 (327)
T ss_pred CChHHHHHHHH-HHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCC
Confidence 47777766666 99999999998776432211 0001111100 00000111 235788999999999999
Q ss_pred EEEEec
Q psy8670 127 KILLDF 132 (224)
Q Consensus 127 ~vilD~ 132 (224)
.++...
T Consensus 92 ~~~stp 97 (327)
T TIGR03586 92 TIFSSP 97 (327)
T ss_pred cEEEcc
Confidence 998643
No 401
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.43 E-value=2.2e+02 Score=25.66 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 57 DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 57 ~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
+..-+-+.+.+-. ..+|++|++.+. -..|.. ..+.| +| .-+| .+.++-|.+.+++.||.++.++
T Consensus 109 CsIEs~eq~l~~A-~~lk~~g~~~~r-~g~~kp--Rtsp~---sf----~G~g-~~gl~~L~~~~~e~Gl~~~tev 172 (352)
T PRK13396 109 CSVENEEMIVETA-KRVKAAGAKFLR-GGAYKP--RTSPY---AF----QGHG-ESALELLAAAREATGLGIITEV 172 (352)
T ss_pred CcccCHHHHHHHH-HHHHHcCCCEEE-eeeecC--CCCCc---cc----CCch-HHHHHHHHHHHHHcCCcEEEee
Confidence 3345556666666 788999987765 333331 11222 22 2257 8999999999999999999887
No 402
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=34.41 E-value=37 Score=30.10 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=25.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 104 FEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 104 v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
++...|...+++++++.||++|+.+++|-+
T Consensus 165 ~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a 194 (397)
T TIGR01976 165 ASNTLGSIVDLAAITELVHAAGALVVVDAV 194 (397)
T ss_pred CCCCCCccCCHHHHHHHHHHcCCEEEEehh
Confidence 445567778899999999999999999996
No 403
>PRK06290 aspartate aminotransferase; Provisional
Probab=34.39 E-value=1.1e+02 Score=27.59 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+.++++++++.|+++|+-||.|=+..+..
T Consensus 197 s~e~l~~l~~la~~~~~~iI~DEaY~~~~ 225 (410)
T PRK06290 197 TKEFYEEVVDFAKENNIIVVQDAAYAALT 225 (410)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhce
Confidence 46899999999999999999999887654
No 404
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=34.37 E-value=35 Score=30.54 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.|+..+++++.+.||++|+.+++|-..-
T Consensus 152 ~g~~~dl~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 152 LGELVDIAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred CCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 5777889999999999999999999854
No 405
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.32 E-value=64 Score=30.48 Aligned_cols=39 Identities=13% Similarity=0.326 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.+++.++++.+++. |+.+-.|+++..-+...+-|++.+
T Consensus 345 t~e~~~~~v~~lr~~~p~i~i~tdiIvGfPgET~edf~~Tl 385 (509)
T PRK14327 345 TRESYLELVRKIKEAIPNVALTTDIIVGFPNETDEQFEETL 385 (509)
T ss_pred CHHHHHHHHHHHHHhCCCcEEeeeEEEeCCCCCHHHHHHHH
Confidence 468999999999998 788889999999888877777665
No 406
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=34.27 E-value=35 Score=30.39 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=26.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 104 FEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 104 v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
++...|...+++++++.||++|+.+++|.+.
T Consensus 166 ~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 196 (398)
T TIGR03392 166 MSNVTGGCPDLARAITLAHQYGAVVVVDGAQ 196 (398)
T ss_pred ccccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 4455688888999999999999999999986
No 407
>PTZ00413 lipoate synthase; Provisional
Probab=34.27 E-value=2e+02 Score=26.30 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
-+.+++.+-+ ..|+++|++.+=+.-...-+ . .-+.|. +|=++++|..+-+.+.+.|.+-+.=-.+=..|
T Consensus 307 ET~eEvie~m-~dLrelGVDivtIGQYL~Ps-~-~h~~V~-------~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVRSS 375 (398)
T PTZ00413 307 ETEEEVRQTL-RDLRTAGVSAVTLGQYLQPT-K-TRLKVS-------RYAHPKEFEMWEEEAMKMGFLYCASGPLVRSS 375 (398)
T ss_pred CCHHHHHHHH-HHHHHcCCcEEeeccccCCC-c-ccCCce-------eccCHHHHHHHHHHHHHcCCceEEecCccccc
Confidence 4788888888 99999999988664332221 1 112222 36789999999999999999887766655444
No 408
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.26 E-value=80 Score=29.20 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCCCCCccchhHHhhh
Q psy8670 110 DLKDFETLKERLHAL--GIKILLDFVPNHTSNQHEWFKKSL 148 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~--gi~vilD~v~nh~~~~~~w~~~~~ 148 (224)
+.+++.++++.+++. |+.+-.|+.+..-+...+=|++.+
T Consensus 284 t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl 324 (449)
T PRK14332 284 SKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTL 324 (449)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHH
Confidence 678999999999987 788889999998888777776665
No 409
>PRK05764 aspartate aminotransferase; Provisional
Probab=34.26 E-value=47 Score=29.42 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
.++++++++.|+++|+.+++|-+....
T Consensus 183 ~~~~~~l~~~a~~~~~~ii~De~y~~~ 209 (393)
T PRK05764 183 PEELEAIADVAVEHDIWVLSDEIYEKL 209 (393)
T ss_pred HHHHHHHHHHHHHCCcEEEEeccccce
Confidence 589999999999999999999876543
No 410
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=34.23 E-value=2.9e+02 Score=23.44 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=30.5
Q ss_pred EEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCc
Q psy8670 43 FYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPI 86 (224)
Q Consensus 43 iY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi 86 (224)
|..+.|+||+++.. .-+++.+.++. .+..+.|.+.|=+...
T Consensus 6 IlN~tpdSF~dg~~--~~~~~~~~~~a-~~~~~~GAdiIDIG~~ 46 (257)
T cd00739 6 ILNVTPDSFSDGGR--FLSLDKAVAHA-EKMIAEGADIIDIGGE 46 (257)
T ss_pred EEcCCCCCCCCCCC--CCCHHHHHHHH-HHHHHCCCCEEEECCC
Confidence 44566999987432 13678888888 8888999999988753
No 411
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=34.08 E-value=1.5e+02 Score=21.44 Aligned_cols=59 Identities=12% Similarity=-0.066 Sum_probs=33.6
Q ss_pred HHHHHcC-CCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 71 EHLHDLG-VGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 71 ~~l~~lG-~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
.++..+| .......+ .+.......-...|..-+=..-|...+..+.++.|+++|.++|.
T Consensus 19 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 19 YLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 5566776 66554442 11110000112233322334457778999999999999999864
No 412
>PRK07568 aspartate aminotransferase; Provisional
Probab=34.07 E-value=49 Score=29.35 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+.++++++++.|+++|+.||+|-++....
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii~De~y~~~~ 208 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLISDEVYREFV 208 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccchhcc
Confidence 36799999999999999999999876543
No 413
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=34.02 E-value=89 Score=24.73 Aligned_cols=21 Identities=24% Similarity=0.621 Sum_probs=16.5
Q ss_pred HHHHHcCCCeEEEcCcccCCC
Q psy8670 71 EHLHDLGVGAVWISPIFKSPM 91 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~ 91 (224)
..+.+.|++.+.++|+|++.+
T Consensus 109 ~~a~~~g~dYv~~gpvf~T~s 129 (180)
T PF02581_consen 109 REAEELGADYVFLGPVFPTSS 129 (180)
T ss_dssp HHHHHCTTSEEEEETSS--SS
T ss_pred HHhhhcCCCEEEECCccCCCC
Confidence 666789999999999999864
No 414
>PLN02721 threonine aldolase
Probab=33.92 E-value=49 Score=28.57 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC
Q psy8670 111 LKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v 133 (224)
.++++++++.||++|+.+++|-.
T Consensus 157 ~~~l~~l~~l~~~~g~~livD~a 179 (353)
T PLN02721 157 VEYTDKVGELAKRHGLKLHIDGA 179 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEEEch
Confidence 57899999999999999999975
No 415
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=33.92 E-value=29 Score=30.29 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.|+..+++++.+.||++|+.+++|-..
T Consensus 164 tG~~~~l~~I~~l~~~~g~~livD~a~ 190 (371)
T PRK13520 164 LGQVDPIPELSKIALENGIFLHVDAAF 190 (371)
T ss_pred CcccCCHHHHHHHHHHcCCCEEEEecc
Confidence 577788999999999999999999964
No 416
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=33.90 E-value=59 Score=29.14 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHcCCE-EEEecCCC
Q psy8670 110 DLKDFETLKERLHALGIK-ILLDFVPN 135 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~-vilD~v~n 135 (224)
+.++-.+-++.|++.|++ |=+++.+.
T Consensus 199 ~~~~rl~~i~~a~~aG~~~v~~g~i~G 225 (366)
T TIGR02351 199 DFRYRLNTPERAAKAGMRKIGIGALLG 225 (366)
T ss_pred CHHHHHHHHHHHHHcCCCeeceeEEEe
Confidence 577888889999999997 76777665
No 417
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=33.84 E-value=1.4e+02 Score=26.42 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHHcC--CCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 61 DLKGMIEKLPEHLHDLG--VGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
+-+.+.+-+ +.+++.+ +++|+|=.-+. .+| .+ ++.|+ +|-++ ++|++++|++|+++++-+.+
T Consensus 22 ~~~ev~~v~-~~~r~~~IP~D~i~lDidy~-----~~~--~~-Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P 86 (332)
T cd06601 22 NRSDLEEVV-EGYRDNNIPLDGLHVDVDFQ-----DNY--RT-FTTNGGGFPNP---KEMFDNLHNKGLKCSTNITP 86 (332)
T ss_pred CHHHHHHHH-HHHHHcCCCCceEEEcCchh-----cCC--Cc-eeecCCCCCCH---HHHHHHHHHCCCeEEEEecC
Confidence 334455555 6666644 57777654332 122 22 35564 46654 68999999999999886654
No 418
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=33.82 E-value=49 Score=24.21 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=34.0
Q ss_pred HHHHH-cCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 71 EHLHD-LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 71 ~~l~~-lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
..+.. +|+..+...+..... .-...|..-+=..-|+..+..+.++.|+++|+++|.
T Consensus 19 ~~l~~~~~~~~~~~~~~~~~~----~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 19 SLLLDEAKIPVYVVKDYTLPA----FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred HHHHhccCCCEEEecCccCcC----CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 44455 378777654421110 011223323334458889999999999999999864
No 419
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=33.80 E-value=1.7e+02 Score=24.07 Aligned_cols=60 Identities=15% Similarity=0.273 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
..++.+.+.+ ..++++|++++-+..+.+.. .|| .+-+++|+++|+ |+.+.+---++++..
T Consensus 69 ~E~~~M~~dI-~~~~~~GadG~VfG~L~~dg------------~iD-----~~~~~~Li~~a~--~~~~tFHRAfD~~~d 128 (201)
T PF03932_consen 69 EEIEIMKEDI-RMLRELGADGFVFGALTEDG------------EID-----EEALEELIEAAG--GMPVTFHRAFDEVPD 128 (201)
T ss_dssp HHHHHHHHHH-HHHHHTT-SEEEE--BETTS------------SB------HHHHHHHHHHHT--TSEEEE-GGGGGSST
T ss_pred HHHHHHHHHH-HHHHHcCCCeeEEEeECCCC------------CcC-----HHHHHHHHHhcC--CCeEEEeCcHHHhCC
Confidence 4577788888 99999999999887776533 232 478999999986 999987555554444
No 420
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=33.77 E-value=40 Score=29.45 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 104 FEPLFGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 104 v~~~~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
++..-|...+++++++.||++|+.+++|-+
T Consensus 147 ~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a 176 (353)
T TIGR03235 147 VNNETGSIQPIREIAEVLEAHEAFFHVDAA 176 (353)
T ss_pred ccCCceeccCHHHHHHHHHHcCCEEEEEch
Confidence 344457778899999999999999999997
No 421
>KOG0257|consensus
Probab=33.76 E-value=64 Score=29.61 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC---------------------CCCCCCccCCCCcCCCC----------
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM---------------------ADFGYDISDYLSFEPLF---------- 108 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~---------------------~~~gY~~~d~~~v~~~~---------- 108 (224)
|--.++...+ --+-+-|...|.+=|.|.+-. ....-.+.|+..++..+
T Consensus 101 GA~~ai~~~~-~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~n 179 (420)
T KOG0257|consen 101 GANEAISSAL-LGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILN 179 (420)
T ss_pred CchHHHHHHH-HHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEe
Confidence 6667777776 666677888888888776410 01112233433332222
Q ss_pred ------C---CHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 109 ------G---DLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 109 ------G---~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
| +.++|+++++-|+++|+-||.|=|+.|...
T Consensus 180 tPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~ 219 (420)
T KOG0257|consen 180 TPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVY 219 (420)
T ss_pred CCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhh
Confidence 2 479999999999999999999999887653
No 422
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=33.75 E-value=52 Score=29.99 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
.++++++++.|+++|+-||.|-++.|..
T Consensus 209 ~~~l~~i~~~a~~~~i~ii~De~Y~~~~ 236 (430)
T PLN00145 209 YEHLAKIAETARKLGILVIADEVYDHLT 236 (430)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccchhhc
Confidence 6789999999999999999999988765
No 423
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=33.72 E-value=51 Score=29.11 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEec
Q psy8670 111 LKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~ 132 (224)
.+.+.++++.|+++|.+|++|.
T Consensus 145 ~d~y~~li~~~~~~g~~vilD~ 166 (310)
T COG1105 145 PDAYAELIRILRQQGAKVILDT 166 (310)
T ss_pred HHHHHHHHHHHHhcCCeEEEEC
Confidence 5789999999999999999997
No 424
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=33.63 E-value=63 Score=26.84 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHHcC-CCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcC--CEEEEecCC-
Q psy8670 59 VGDLKGMIEKLPEHLHDLG-VGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALG--IKILLDFVP- 134 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG-~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~g--i~vilD~v~- 134 (224)
..+++...++. +.|++.| .....+.|++.... ......+.+.+...+.+.++.|-+.++++| ++|.+.+-.
T Consensus 56 ~~~~~Ea~~k~-~~lr~~~~~~~~~ig~~q~~~~----~~~~~~~~l~~~vds~~~~~~l~~~a~~~~~~~~V~l~vdtg 130 (229)
T TIGR00044 56 ENYVQELVEKI-KLLEDLGKLEWHFIGPLQSNKD----RLVVENFDWVHTIDSLKIAKKLNEQREKLQPPLNVLLQINIS 130 (229)
T ss_pred EEcHHHHHHHH-HHhcccCCceEEEECCCcchHH----HHHhhhcCEEEEECCHHHHHHHHHHHHhcCCCceEEEEEECC
Confidence 36788888888 8888776 33344456543321 122334566777788999999999998776 677777755
Q ss_pred ---CCCCcc
Q psy8670 135 ---NHTSNQ 140 (224)
Q Consensus 135 ---nh~~~~ 140 (224)
|..+-.
T Consensus 131 ~gm~R~G~~ 139 (229)
T TIGR00044 131 DEESKSGIQ 139 (229)
T ss_pred CCCCCCCCC
Confidence 555543
No 425
>PLN02231 alanine transaminase
Probab=33.59 E-value=2e+02 Score=27.22 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 289 s~e~l~~Iv~~a~~~~l~lI~DEvY~~l~ 317 (534)
T PLN02231 289 AEENQRDIVEFCKQEGLVLLADEVYQENV 317 (534)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence 46999999999999999999999988754
No 426
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=33.55 E-value=33 Score=30.51 Aligned_cols=27 Identities=7% Similarity=0.177 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
|+..+++++.+.||++|+.+++|-.-.
T Consensus 163 g~~~~~~~i~~~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 163 KSMLSVEDAAQVAQEHNLPLIVDAAAE 189 (363)
T ss_pred CCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 556667889999999999999999753
No 427
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=33.54 E-value=52 Score=23.91 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKI 128 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~v 128 (224)
|.-..+...+.-+++++|.......+..+. ...-......|..-+=..-|...+..+.++.++++|.++
T Consensus 14 G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~v 83 (131)
T PF01380_consen 14 GSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGAPV 83 (131)
T ss_dssp THHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCCeE
Confidence 455556666646777888777766554431 110011122222222223477789999999999999999
No 428
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=33.53 E-value=54 Score=28.26 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 105 EPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 105 ~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
++..|...+++++++.||++|+-+++|-+.
T Consensus 135 ~~~~G~~~~~~~i~~l~~~~~~~livD~~~ 164 (355)
T TIGR03301 135 ETTTGILNPLEAIAKVARSHGAVLIVDAMS 164 (355)
T ss_pred CCcccchhHHHHHHHHHHHcCCEEEEEecc
Confidence 334588888999999999999999999753
No 429
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=33.42 E-value=1.8e+02 Score=27.18 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=56.1
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCC---CcCCCCCCHHHHHH
Q psy8670 40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYL---SFEPLFGDLKDFET 116 (224)
Q Consensus 40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~---~v~~~~G~~~~~~~ 116 (224)
+.++|+...+.... +.+-..+.--. ..|..||-+.=|-++++..+.-..|=---|.+ .=||.++ .+++.+
T Consensus 46 g~~l~~~na~~~~~-----PAS~~Kl~Tta-aAL~~LG~d~rf~T~v~~~g~i~~G~L~GdL~i~G~GDPtL~-~~~L~~ 118 (477)
T PRK11113 46 SAPAIDYHSQQMAL-----PASTQKVITAL-AALLQLGPDFRFTTTLETKGKVENGVLKGDLIARFGGDPTLT-RQDLRN 118 (477)
T ss_pred CCEEEEEcCCCccC-----CcHHHHHHHHH-HHHHhcCCCceEEEEEEeeccccCCceeeeEEEEEecCCCCC-HHHHHH
Confidence 45566666544322 34444444445 67788999999999887654311110000111 2377777 467999
Q ss_pred HHHHHHHcCCEEEE-ecCCCCC
Q psy8670 117 LKERLHALGIKILL-DFVPNHT 137 (224)
Q Consensus 117 lv~~~h~~gi~vil-D~v~nh~ 137 (224)
|+++++++||+-|- |++++-.
T Consensus 119 la~~l~~~GI~~I~G~lv~D~s 140 (477)
T PRK11113 119 MVATLKKSGVKQIDGNLLIDTS 140 (477)
T ss_pred HHHHHHHcCCcEEeeeEEEECc
Confidence 99999999998764 6666533
No 430
>PRK06108 aspartate aminotransferase; Provisional
Probab=33.42 E-value=49 Score=29.08 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
+.++++++++.|+++|+-+|+|-+..+.
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~y~~~ 203 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEVYERL 203 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhhhhh
Confidence 5789999999999999999999876554
No 431
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=33.36 E-value=1.1e+02 Score=26.70 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHcCCEE
Q psy8670 110 DLKDFETLKERLHALGIKI 128 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~v 128 (224)
+.+++.++++.+++.|+.+
T Consensus 172 n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 172 NDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred CHHHHHHHHHHHHhCCCeE
Confidence 3467888888888888765
No 432
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=33.32 E-value=1.7e+02 Score=25.47 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEE
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWI 83 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l 83 (224)
.++++.+.+.+ +.+++.|+..+.+
T Consensus 135 ~~~~~~vl~~i-~~l~~~G~~~v~i 158 (334)
T TIGR02666 135 GGRLEQVLAGI-DAALAAGLEPVKL 158 (334)
T ss_pred CCCHHHHHHHH-HHHHHcCCCcEEE
Confidence 45899999999 9999999874433
No 433
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=33.27 E-value=1.7e+02 Score=25.55 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy8670 64 GMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129 (224)
Q Consensus 64 ~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vi 129 (224)
.+.+-+ ..+.+.|+..+.+.. .|+. .++-++|++.|+++||+|+
T Consensus 77 ~v~~~l-~e~~~~gvk~avI~s--------~Gf~-------------~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 77 FAADAI-LEAIDAGIDLIVCIT--------EGIP-------------VLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred HHHHHH-HHHHHCCCCEEEEEC--------CCCC-------------HHHHHHHHHHHHHcCCEEE
Confidence 344445 667778888865543 2321 3445789999999999996
No 434
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=33.25 E-value=33 Score=29.60 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
|...+++++++.|+++|+.+|+|-+.-
T Consensus 160 G~~~~~~~i~~l~~~~~~~li~De~~~ 186 (360)
T TIGR00858 160 GDIAPLPQLVALAERYGAWLMVDDAHG 186 (360)
T ss_pred CCCcCHHHHHHHHHHcCcEEEEECccc
Confidence 555678999999999999999999853
No 435
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.20 E-value=38 Score=30.05 Aligned_cols=69 Identities=22% Similarity=0.399 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHHcCC--CeEEEcCcccCCC-----CCCCC------CccCC--CCcC--CCCCCHHHHHHHHHHHHH
Q psy8670 61 DLKGMIEKLPEHLHDLGV--GAVWISPIFKSPM-----ADFGY------DISDY--LSFE--PLFGDLKDFETLKERLHA 123 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~--~~i~l~Pi~~~~~-----~~~gY------~~~d~--~~v~--~~~G~~~~~~~lv~~~h~ 123 (224)
+-+.+.+-+ +.+++.|| +.|+|=+ ..... .+..| ....+ +..+ .+|. +.++||+++|+
T Consensus 22 ~~~ev~~v~-~~~~~~~iP~d~i~lD~-W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP---dp~~mi~~Lh~ 96 (340)
T cd06597 22 TQAEVMRQM-DAHEEHGIPVTVVVIEQ-WSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP---NPKGMIDELHE 96 (340)
T ss_pred CHHHHHHHH-HHHHHcCCCeeEEEEec-ccCcceeeeeccchhcccccCCcceecccccCccccCC---CHHHHHHHHHH
Confidence 456666666 88888775 7788763 22110 00111 11111 1111 2333 68899999999
Q ss_pred cCCEEEEecCC
Q psy8670 124 LGIKILLDFVP 134 (224)
Q Consensus 124 ~gi~vilD~v~ 134 (224)
+|+++++=+.+
T Consensus 97 ~G~kv~l~v~P 107 (340)
T cd06597 97 QGVKVLLWQIP 107 (340)
T ss_pred CCCEEEEEecC
Confidence 99999885444
No 436
>PLN00175 aminotransferase family protein; Provisional
Probab=33.19 E-value=58 Score=29.44 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
.++++++++.|+++|+-||.|-++.+..
T Consensus 206 ~~~l~~l~~~a~~~~~~ii~De~Y~~l~ 233 (413)
T PLN00175 206 REELELIASLCKENDVLAFTDEVYDKLA 233 (413)
T ss_pred HHHHHHHHHHHHHcCcEEEEecccCccc
Confidence 6899999999999999999999987764
No 437
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=33.04 E-value=82 Score=26.43 Aligned_cols=58 Identities=14% Similarity=0.267 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCC
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHT 137 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~ 137 (224)
..+.+-+ +++++-| ..|+|+.+...+.. | +..+-+.+|++.|+++|++ |.+-+..+..
T Consensus 14 ~~l~~~~-~~~k~~~-~~lHl~GLlSdGGV-H--------------Sh~~Hl~al~~~a~~~gv~~V~vH~f~DGR 72 (223)
T PF06415_consen 14 PVLLEAI-EHAKKNG-GRLHLMGLLSDGGV-H--------------SHIDHLFALIKLAKKQGVKKVYVHAFTDGR 72 (223)
T ss_dssp HHHHHHH-HHHCCTT---EEEEEEESS-SS-S----------------HHHHHHHHHHHHHTT-SEEEEEEEE-SS
T ss_pred HHHHHHH-HHHHhcC-CeEEEEEEecCCCc-c--------------ccHHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 3455555 7888776 68999998865421 1 3467899999999999975 7665555543
No 438
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=33.01 E-value=2.7e+02 Score=22.72 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCC-eEEEcCcccCCCC--C-CCCCccCCCCcCCCCCC-------HHHHHHHHHHHHH--cCCEEEEe
Q psy8670 65 MIEKLPEHLHDLGVG-AVWISPIFKSPMA--D-FGYDISDYLSFEPLFGD-------LKDFETLKERLHA--LGIKILLD 131 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~-~i~l~Pi~~~~~~--~-~gY~~~d~~~v~~~~G~-------~~~~~~lv~~~h~--~gi~vilD 131 (224)
..+.+ .++++.|+. +|-|.|-.+.+.- . .--+..-..+++|-+|+ .+.++++.+...+ .+..+.+|
T Consensus 94 ~~~~i-~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vD 172 (201)
T PF00834_consen 94 PKETI-KYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVD 172 (201)
T ss_dssp HHHHH-HHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEE
T ss_pred HHHHH-HHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 44556 899999998 6777775443210 0 11234455678998876 3344444444444 56889999
Q ss_pred cCCC
Q psy8670 132 FVPN 135 (224)
Q Consensus 132 ~v~n 135 (224)
-=+|
T Consensus 173 GGI~ 176 (201)
T PF00834_consen 173 GGIN 176 (201)
T ss_dssp SSES
T ss_pred CCCC
Confidence 8766
No 439
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=32.97 E-value=62 Score=27.40 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHHcCCCeEEEcCcccCCC-----CCCCCCcc------CCCC-cCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 70 PEHLHDLGVGAVWISPIFKSPM-----ADFGYDIS------DYLS-FEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 70 ~~~l~~lG~~~i~l~Pi~~~~~-----~~~gY~~~------d~~~-v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
++..++.|+++|=+.-.....- ....|... .++. +...-=+.+++++|.+.|+++||..+...
T Consensus 2 I~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stp 76 (241)
T PF03102_consen 2 IDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTP 76 (241)
T ss_dssp HHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECC
Confidence 3677889999998764432100 00111111 1111 11111247899999999999999997654
No 440
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=32.94 E-value=97 Score=27.75 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
|+..+++++++.|+++|+-+|+|-+..
T Consensus 192 G~~~~l~~i~~l~~~~~~~livDea~~ 218 (410)
T PRK13392 192 GDIAPIEAICDLADRYNALTYVDEVHA 218 (410)
T ss_pred cccccHHHHHHHHHHcCCEEEEECCcc
Confidence 444458888889999999999997754
No 441
>PRK07324 transaminase; Validated
Probab=32.61 E-value=68 Score=28.43 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+.++++++++.|+++|+.++.|-++.+..
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l~ 199 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPLD 199 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 57899999999999999999999876543
No 442
>PRK02227 hypothetical protein; Provisional
Probab=32.57 E-value=1.1e+02 Score=26.03 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=33.2
Q ss_pred HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+.+++.||..+-|= .... .|-...|| =+++++++++++||++||.+=+
T Consensus 138 ~~a~~aGf~g~MlD----Ta~K-dg~~Lfd~-------l~~~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 138 AIAADAGFDGAMLD----TAIK-DGKSLFDH-------MDEEELAEFVAEARSHGLMSAL 185 (238)
T ss_pred HHHHHcCCCEEEEe----cccC-CCcchHhh-------CCHHHHHHHHHHHHHcccHhHh
Confidence 67788999998662 2111 23334444 3478999999999999997643
No 443
>PLN02899 alpha-galactosidase
Probab=32.55 E-value=1.1e+02 Score=29.68 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEcCcccCCCCC------CCCCcc---CCCCcCC-CCC---CHHHHHHHHHHHHHcCCEE
Q psy8670 62 LKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD------FGYDIS---DYLSFEP-LFG---DLKDFETLKERLHALGIKI 128 (224)
Q Consensus 62 l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~------~gY~~~---d~~~v~~-~~G---~~~~~~~lv~~~h~~gi~v 128 (224)
++...+.+..-|++.|++.|-+==.+...... .|.... .-...|| +|- +...|+.|.+.+|.+|+|.
T Consensus 50 i~~~Ad~vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYVHskGLKF 129 (633)
T PLN02899 50 FLQNAEIVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKVHAMGLKF 129 (633)
T ss_pred HHHHHHHHHcchHhhCCeEEEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHHHhCCcce
Confidence 34444434357899999999775444322111 111112 2333443 343 2357999999999999986
Q ss_pred EE
Q psy8670 129 LL 130 (224)
Q Consensus 129 il 130 (224)
=+
T Consensus 130 GI 131 (633)
T PLN02899 130 GI 131 (633)
T ss_pred EE
Confidence 33
No 444
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.46 E-value=93 Score=23.32 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCCeEEEcCcccCC
Q psy8670 64 GMIEKLPEHLHDLGVGAVWISPIFKSP 90 (224)
Q Consensus 64 ~~~~~l~~~l~~lG~~~i~l~Pi~~~~ 90 (224)
.+.+.| +.|.+.|++.|.+.|.+-.+
T Consensus 57 ~~~eaL-~~l~~~G~~~V~V~Pl~l~~ 82 (127)
T cd03412 57 TPEEAL-AKLAADGYTEVIVQSLHIIP 82 (127)
T ss_pred CHHHHH-HHHHHCCCCEEEEEeCeeEC
Confidence 356677 88899999999999998654
No 445
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=32.35 E-value=59 Score=29.13 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
.++++++++.|+++|+-||.|-++.+..
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (403)
T TIGR01265 188 RDHLQKIAEVARKLGIPIIADEIYGHMV 215 (403)
T ss_pred HHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 5789999999999999999999987654
No 446
>PRK07777 aminotransferase; Validated
Probab=32.32 E-value=58 Score=28.90 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
.++++++++.|+++|+-+|.|-+..+..
T Consensus 178 ~~~~~~l~~~~~~~~~~li~De~y~~~~ 205 (387)
T PRK07777 178 AAELAAIAELAVEHDLLVITDEVYEHLV 205 (387)
T ss_pred HHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence 5899999999999999999998876544
No 447
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=32.30 E-value=47 Score=29.39 Aligned_cols=26 Identities=8% Similarity=0.180 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 109 GDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 109 G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
|...+++++++.||++|+.+++|-+.
T Consensus 184 G~~~~l~~i~~la~~~~~~li~De~~ 209 (393)
T TIGR01822 184 GVIAPLDEICDLADKYDALVMVDECH 209 (393)
T ss_pred CCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 55567899999999999999999994
No 448
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=32.20 E-value=51 Score=22.98 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccC
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKS 89 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~ 89 (224)
+.+.+ +.+++.|++.|.+.|++..
T Consensus 47 i~~~l-~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 47 TEEAI-RELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred HHHHH-HHHHHcCCCeEEEEeCccc
Confidence 44556 7788999999999999876
No 449
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=32.16 E-value=2.5e+02 Score=21.98 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
+.+.+...|..+|.....+...... .-...|..-+=..-|...+..++++.|+++|+++|.
T Consensus 47 ~A~~~~~~l~~~g~~~~~~~~~~~~-----~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 47 VAKAFAMRLMHLGLNVYVVGETTTP-----AIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred HHHHHHHHHHhCCCeEEEeCCCCCC-----CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 3444435677789888776542210 111222222223347778999999999999999854
No 450
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=32.12 E-value=1.2e+02 Score=29.55 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=54.0
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC--CCCCCccCCCCcCCCCCC--------
Q psy8670 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA--DFGYDISDYLSFEPLFGD-------- 110 (224)
Q Consensus 41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~v~~~~G~-------- 110 (224)
.++.++..... ...+..+.+.+ ..|+++||.- .|--+-....+ ...--+.|+-++|..+-.
T Consensus 663 ~l~~ei~e~~~-------~~~~~~~~~~l-~~l~~~G~~i-~ld~fg~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~ 733 (799)
T PRK11359 663 QLTVEITESMM-------MEHDTEIFKRI-QILRDMGVGL-SVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRI 733 (799)
T ss_pred hEEEEEcCchh-------hcCHHHHHHHH-HHHHHCCCEE-EEECCCCchhhHHHHhhCCCCEEEECHHHHhhcccChhH
Confidence 45666654443 23567777778 9999999954 33222111000 001124677788877621
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
..-++.+++.||+.|++||++-|=+
T Consensus 734 ~~~~~~~~~~~~~~~i~via~gVe~ 758 (799)
T PRK11359 734 LALLEAITSIGQSLNLTVVAEGVET 758 (799)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 2448999999999999999998765
No 451
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=32.07 E-value=43 Score=30.44 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.|...+++++++.||++|+.||+|-+.-
T Consensus 158 tG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 158 LLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred CCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 4667889999999999999999999864
No 452
>PRK05434 phosphoglyceromutase; Provisional
Probab=32.06 E-value=1.5e+02 Score=28.09 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEecCCCCCC
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGI-KILLDFVPNHTS 138 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi-~vilD~v~nh~~ 138 (224)
..+.+-+ ++.++-| .+|+|+.+...+.. .+..+-+.+|++.|+++|+ +|.+-+..+..-
T Consensus 96 ~~~~~~~-~~~~~~~-~~lHl~GL~SdggV---------------Hsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD 155 (507)
T PRK05434 96 PALLDAI-DKAKKNG-GALHLMGLLSDGGV---------------HSHIDHLFALLELAKEEGVKKVYVHAFLDGRD 155 (507)
T ss_pred HHHHHHH-HHHHhcC-CeEEEEEeccCCCc---------------ccHHHHHHHHHHHHHHcCCCEEEEEEecCCCC
Confidence 3444555 7778777 89999998865421 1336789999999999999 888877776554
No 453
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=32.03 E-value=44 Score=29.29 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=26.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 104 FEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 104 v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
++..-|...+++++++.||++|.-+++|.+-
T Consensus 138 ~~~~tG~~~~i~~I~~l~~~~g~~livD~~~ 168 (363)
T TIGR02326 138 CETTTGILNPIEAVAKLAHRHGKVTIVDAMS 168 (363)
T ss_pred ecCCccccCcHHHHHHHHHHcCCEEEEEccc
Confidence 3444688888999999999999999999763
No 454
>PRK08175 aminotransferase; Validated
Probab=31.90 E-value=53 Score=29.29 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
+.++++++++.|+++|+.||.|-+..+
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~y~~ 208 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLAYAD 208 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecchHh
Confidence 478999999999999999999987654
No 455
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=31.86 E-value=1.7e+02 Score=25.87 Aligned_cols=72 Identities=26% Similarity=0.340 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139 (224)
Q Consensus 60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~ 139 (224)
..|.+-.+.| ..+.++|+..+-|+=-.... +|..+..- .+ .|=-..=+++|++|++.|| |+|+ .|++.
T Consensus 105 ~~~~~dl~~L-~~~~~~GvR~lgltwn~~N~---~g~g~~~~--~~--~GLs~~Gk~lV~~~N~LgI--iiDl--SH~s~ 172 (313)
T COG2355 105 EPLGDDLDKL-ELFHALGVRSLGLTWNRDNL---FGDGCYER--TG--GGLTPFGKELVREMNELGI--IIDL--SHLSD 172 (313)
T ss_pred ccccccHHHH-HHHHHhCceEEEeeeccCCc---ccCccCCC--CC--CCCCHHHHHHHHHHHhcCC--EEEe--cccCC
Confidence 3455566778 89999998877664332221 22222211 11 2322344789999988876 5676 68888
Q ss_pred cchh
Q psy8670 140 QHEW 143 (224)
Q Consensus 140 ~~~w 143 (224)
+..|
T Consensus 173 kt~~ 176 (313)
T COG2355 173 KTFW 176 (313)
T ss_pred ccHH
Confidence 7655
No 456
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=31.82 E-value=54 Score=28.78 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+.++++++++.|+++|+-||.|-+..+..
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDECYLELG 188 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence 46899999999999999999998875443
No 457
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=31.76 E-value=82 Score=27.73 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=36.3
Q ss_pred CCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchh
Q psy8670 78 VGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEW 143 (224)
Q Consensus 78 ~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w 143 (224)
+.+|.+-|++.. .|.. .++.+.++++++.|+++|+-+|+|=|....+....+
T Consensus 168 ~~~ii~e~i~~~----~G~~----------~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~ 219 (377)
T PRK02936 168 VAAVMLEVVQGE----GGVI----------PADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTL 219 (377)
T ss_pred eEEEEEecccCC----CCCc----------cCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh
Confidence 567777777532 1211 134689999999999999999999997555544433
No 458
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=31.73 E-value=41 Score=29.10 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
+|...+++++++.|+++|+.+|+|-+-.
T Consensus 116 ~G~~~~~~~i~~l~~~~~i~li~D~a~~ 143 (352)
T cd00616 116 YGNPADMDAIMAIAKRHGLPVIEDAAQA 143 (352)
T ss_pred CCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 4666678889999999999999999743
No 459
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=31.65 E-value=48 Score=29.03 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=28.8
Q ss_pred CCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 102 ~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
+-+|-.||+..|-+.+.+-||+.|+-+++...+
T Consensus 163 Th~Dg~YGNl~Dakkva~ic~e~gvPlllN~AY 195 (382)
T COG1103 163 THVDGEYGNLADAKKVAKICREYGVPLLLNCAY 195 (382)
T ss_pred eccCCCcCCchhhHHHHHHHHHcCCceEeecce
Confidence 457889999999999999999999999886543
No 460
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=31.49 E-value=55 Score=30.52 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC
Q psy8670 111 LKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v 133 (224)
+++++++.+.|+++|++|++|--
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~DaA 219 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDAT 219 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEECc
Confidence 58999999999999999999983
No 461
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=31.47 E-value=41 Score=29.49 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
.|...+++++++.|+++|+.+++|..
T Consensus 152 tG~~~~~~~i~~~~~~~~~~li~D~a 177 (373)
T cd06453 152 LGTINPVKEIGEIAHEAGVPVLVDGA 177 (373)
T ss_pred cCCcCCHHHHHHHHHHcCCEEEEEhh
Confidence 46666788999999999999999975
No 462
>PRK06348 aspartate aminotransferase; Provisional
Probab=31.44 E-value=64 Score=28.66 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 180 s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 208 (384)
T PRK06348 180 SKETLEEIAKIAIEYDLFIISDEVYDGFS 208 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEecccccce
Confidence 46899999999999999999999887654
No 463
>PRK07671 cystathionine beta-lyase; Provisional
Probab=31.40 E-value=47 Score=29.77 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.|...+++++.+.||++|+.+++|-+..
T Consensus 147 tg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 147 LLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred CCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 4677899999999999999999998864
No 464
>PRK10551 phage resistance protein; Provisional
Probab=31.37 E-value=83 Score=29.61 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=50.3
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCC--------ccCCCCcCCCC----
Q psy8670 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYD--------ISDYLSFEPLF---- 108 (224)
Q Consensus 41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~--------~~d~~~v~~~~---- 108 (224)
..+.|+..+.+.+ + ....+.+ ..|+++|+.-. |- ..+ .||. +.|+.++|..|
T Consensus 383 ~LvlEItE~~~~~-------~-~~~~~~l-~~Lr~~G~~ia-lD---DFG---tg~ssl~~L~~l~vD~lKID~~fv~~i 446 (518)
T PRK10551 383 QIVLEITERDMVQ-------E-EEATKLF-AWLHSQGIEIA-ID---DFG---TGHSALIYLERFTLDYLKIDRGFIQAI 446 (518)
T ss_pred eEEEEEechHhcC-------C-HHHHHHH-HHHHHCCCEEE-EE---CCC---CCchhHHHHHhCCCCEEEECHHHHhhh
Confidence 4566665554422 2 3345566 88999998543 22 111 2222 46777888654
Q ss_pred CC----HHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 109 GD----LKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 109 G~----~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
++ ..-++.+++.||+.|++||..-|=+
T Consensus 447 ~~~~~~~~il~~ii~la~~lgi~vVAEGVEt 477 (518)
T PRK10551 447 GTETVTSPVLDAVLTLAKRLNMLTVAEGVET 477 (518)
T ss_pred ccChHHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 22 2368899999999999999998753
No 465
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=31.28 E-value=79 Score=28.25 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~ 144 (224)
.+.++++.+.|+++|+-+|+|-+....+....++
T Consensus 206 ~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~ 239 (396)
T PRK04073 206 EGFLKAARELCKEENVLFIADEIQTGLGRTGKLF 239 (396)
T ss_pred HHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHH
Confidence 4569999999999999999999988766655444
No 466
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=31.12 E-value=1e+02 Score=26.15 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=30.5
Q ss_pred HHHHHHcCCCeEEEcCcccCCCCCCCCCccC--CCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 70 PEHLHDLGVGAVWISPIFKSPMADFGYDISD--YLSFEPLFGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 70 ~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d--~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
.+.|.+.|. +.++=+.+.... -+.+.. -...--.+|+.+++.+++ +++|++.|+|.
T Consensus 16 a~~L~~~g~--v~~sv~t~~g~~--~~~~~~~~~~v~~G~lg~~~~l~~~l---~~~~i~~vIDA 73 (249)
T PF02571_consen 16 AERLAEAGY--VIVSVATSYGGE--LLKPELPGLEVRVGRLGDEEGLAEFL---RENGIDAVIDA 73 (249)
T ss_pred HHHHHhcCC--EEEEEEhhhhHh--hhccccCCceEEECCCCCHHHHHHHH---HhCCCcEEEEC
Confidence 377899988 433333332211 111110 012234466666665555 78899999998
No 467
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=31.10 E-value=50 Score=22.59 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=17.3
Q ss_pred HHHHHcCCCeEEEcCcccCC
Q psy8670 71 EHLHDLGVGAVWISPIFKSP 90 (224)
Q Consensus 71 ~~l~~lG~~~i~l~Pi~~~~ 90 (224)
+.++++|+..|+-+|+-..+
T Consensus 31 ~~~~~~G~~~V~yLPLAa~~ 50 (79)
T PF12996_consen 31 EEYRNLGAENVFYLPLAANP 50 (79)
T ss_pred HHHHHcCCCCEEEccccCCH
Confidence 88899999999999986543
No 468
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=31.06 E-value=2.2e+02 Score=20.98 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCC----CCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 68 KLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLF----GDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 68 ~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~----G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
.+ +.|++.||++|.-+---.......|.....+--.|..- ...++..++++++.+.|=+|++-.
T Consensus 18 ~~-~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC 85 (138)
T smart00195 18 NL-ALLKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHC 85 (138)
T ss_pred CH-HHHHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEC
Confidence 46 88999999999754211111111222211111112111 113556677777778888887744
No 469
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=31.02 E-value=16 Score=33.55 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
+|...+++.+++.||++|+.|++|--
T Consensus 180 ~Gv~~di~~I~~~~h~~~~~llvDEA 205 (417)
T PF01276_consen 180 YGVCYDIKEIAEICHKHGIPLLVDEA 205 (417)
T ss_dssp TSEEE-HHHHHHHHCCTECEEEEE-T
T ss_pred CeEEECHHHHHHHhcccCCEEEEEcc
Confidence 46677999999999999999999974
No 470
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=31.00 E-value=72 Score=28.36 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=27.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 104 FEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 104 v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
+.|.-.+.++..+.++.||+.||++-.-+.+.|.
T Consensus 180 i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Glg 213 (351)
T TIGR03700 180 ICPEKISAERWLEIHRTAHELGLKTNATMLYGHI 213 (351)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCC
Confidence 4444345778889999999999999888888884
No 471
>PTZ00376 aspartate aminotransferase; Provisional
Probab=30.94 E-value=62 Score=29.02 Aligned_cols=31 Identities=3% Similarity=0.128 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCCcc
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTSNQ 140 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~ 140 (224)
+.++++++++.|+++|+-||.|-++.+...+
T Consensus 194 s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~ 224 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPFFDMAYQGFASG 224 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEEEehhhcCccCC
Confidence 4799999999999999999999999876643
No 472
>PLN02757 sirohydrochlorine ferrochelatase
Probab=30.92 E-value=1.8e+02 Score=22.73 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHc--CCEEEEe
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHAL--GIKILLD 131 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~--gi~vilD 131 (224)
+.+.+ +.+.+.|++.|-+.|.|-+... + ..+|+.+.++++.++ ++++.+-
T Consensus 60 l~eal-~~l~~~g~~~vvVvP~FL~~G~-H---------------~~~DIp~~v~~~~~~~p~~~i~~~ 111 (154)
T PLN02757 60 IKDAF-GRCVEQGASRVIVSPFFLSPGR-H---------------WQEDIPALTAEAAKEHPGVKYLVT 111 (154)
T ss_pred HHHHH-HHHHHCCCCEEEEEEhhhcCCc-c---------------hHhHHHHHHHHHHHHCCCcEEEEC
Confidence 44455 6667789999999999876532 1 134677777776654 5666543
No 473
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=30.92 E-value=53 Score=27.96 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDF 132 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~ 132 (224)
-|+.+-.+++|++||..|+.-++-=
T Consensus 240 ~GSl~r~~eli~qAh~lGl~AVISS 264 (321)
T COG1441 240 TGSLQRVRELVQQAHALGLTAVISS 264 (321)
T ss_pred hhhHHHHHHHHHHHHhcCceeEeec
Confidence 3788999999999999999886643
No 474
>PRK05957 aspartate aminotransferase; Provisional
Probab=30.92 E-value=61 Score=28.86 Aligned_cols=29 Identities=10% Similarity=-0.048 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 178 ~~~~~~~i~~~a~~~~~~li~De~y~~~~ 206 (389)
T PRK05957 178 PEALLRAVNQICAEHGIYHISDEAYEYFT 206 (389)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence 47899999999999999999999876543
No 475
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=30.87 E-value=65 Score=27.52 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130 (224)
Q Consensus 63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil 130 (224)
..+...+..+|..+|+.+..+............-...|..-+=..-|.-.++.++++.|+++|+++|.
T Consensus 152 ~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~ 219 (292)
T PRK11337 152 AAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIIC 219 (292)
T ss_pred HHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 33444443556678887776543321100000001222222223336667899999999999999965
No 476
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=30.87 E-value=1.6e+02 Score=25.98 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
+.+.-.+.+ ..+++.|.|+=.-.| .+..|.-..+...=|. ...++|++|+++|+++|++.+.=+-|
T Consensus 13 s~e~R~~l~-~f~~~~kmN~YiYAP------KdDpyhr~~Wre~Yp~-~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 13 SHEDRLDLI-RFLGRYKMNTYIYAP------KDDPYHRSKWREPYPE-EELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp -HHHHHHHH-HHHHHTT--EEEE--------TT-TTTTTTTTS---H-HHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred CHHHHHHHH-HHHHHcCCceEEECC------CCChHHHhhhcccCCH-HHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 455556666 899999999876555 2233333333222221 13588999999999999999987744
No 477
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=30.83 E-value=58 Score=27.76 Aligned_cols=30 Identities=17% Similarity=0.461 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCccchh
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTSNQHEW 143 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w 143 (224)
.+++++|++.|+..||.+++.+ |+..+-..
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEV---h~~~El~~ 166 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEV---HTEDEAKL 166 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEE---CCHHHHHH
Confidence 5789999999999999999999 87665443
No 478
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=30.82 E-value=36 Score=23.39 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCCeEEEcCcc
Q psy8670 65 MIEKLPEHLHDLGVGAVWISPIF 87 (224)
Q Consensus 65 ~~~~l~~~l~~lG~~~i~l~Pi~ 87 (224)
+-+.+ +.|+++|.+.|...||.
T Consensus 52 ~~~~~-~~Lk~~GA~~Ilv~pi~ 73 (75)
T PF08029_consen 52 VWDLM-DKLKAAGASDILVLPIE 73 (75)
T ss_dssp HHHHH-HHHHCTT-EEEEEEE-S
T ss_pred HHHHH-HHHHHcCCCEEEEEecc
Confidence 33455 77899999999999985
No 479
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=30.80 E-value=49 Score=29.11 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.|..++++++++.|+++|+-||.|-+..
T Consensus 187 ~G~~~~~~~l~~la~~~~~~li~De~~~ 214 (397)
T PRK06939 187 DGDIAPLPEICDLADKYDALVMVDDSHA 214 (397)
T ss_pred CCCcCCHHHHHHHHHHhCCEEEEECccc
Confidence 4566789999999999999999999974
No 480
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=30.69 E-value=42 Score=29.37 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.|+..+++++++.||++|+.+++|-..
T Consensus 166 tG~~~~~~~i~~l~~~~~~~livD~a~ 192 (373)
T TIGR03812 166 LGQIDDIEELSKIALENGIYLHVDAAF 192 (373)
T ss_pred CCccCCHHHHHHHHHHcCCeEEEEcCc
Confidence 577788999999999999999999954
No 481
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=30.69 E-value=46 Score=29.94 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
.|...+++++++.||++|+.+|+|-+..
T Consensus 159 tG~v~dl~~I~~la~~~gi~livD~t~~ 186 (390)
T PRK08133 159 LTELADIAALAEIAHAAGALLVVDNCFC 186 (390)
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECCCc
Confidence 5667789999999999999999999853
No 482
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=30.68 E-value=1.5e+02 Score=25.44 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
.++..++++.|+++||..++=+.++.
T Consensus 130 ~ee~~~~~~~~~~~gi~~I~lv~PtT 155 (263)
T CHL00200 130 YEESDYLISVCNLYNIELILLIAPTS 155 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 37888999999999999999888874
No 483
>PRK09082 methionine aminotransferase; Validated
Probab=30.62 E-value=52 Score=29.27 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
+.++++++++.|+++|+.+|.|-+..+..
T Consensus 181 ~~~~~~~i~~~a~~~~i~li~De~y~~~~ 209 (386)
T PRK09082 181 SAADMRALWQLIAGTDIYVLSDEVYEHIV 209 (386)
T ss_pred CHHHHHHHHHHHHHCCEEEEEehhhhhhc
Confidence 46899999999999999999999976543
No 484
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=30.60 E-value=37 Score=31.52 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFV 133 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v 133 (224)
...+++++++.||++|+.+++|.-
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~~ 253 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDLG 253 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEECC
Confidence 466899999999999999999953
No 485
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=30.58 E-value=48 Score=29.55 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=26.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 104 FEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 104 v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
++..-|...+++++++.||++|+.+++|-+-
T Consensus 169 ~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 169 MSNVTGGCPDLARAITLAHQAGMVVMVDGAQ 199 (401)
T ss_pred CcccccCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 4445677788999999999999999999985
No 486
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=30.55 E-value=1.2e+02 Score=26.47 Aligned_cols=59 Identities=20% Similarity=0.125 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEecCCC
Q psy8670 67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGI-KILLDFVPN 135 (224)
Q Consensus 67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi-~vilD~v~n 135 (224)
+.+ +.|++.|++.|.++= .+.++.-|..+.. -|+.+...+-++++.+.|+ .|-+..|+.
T Consensus 105 ~~~-~~L~~aGl~~v~ISl--------Ds~~~e~~~~i~~-~g~~~~vl~~i~~~~~~Gi~~v~in~v~~ 164 (329)
T PRK13361 105 RFA-AELADAGLKRLNISL--------DTLRPELFAALTR-NGRLERVIAGIDAAKAAGFERIKLNAVIL 164 (329)
T ss_pred HHH-HHHHHcCCCeEEEEe--------ccCCHHHhhhhcC-CCCHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 344 677777777765521 1122222333332 3778889999999999999 777776653
No 487
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=30.47 E-value=3.4e+02 Score=25.25 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEcCcccC---C--C-CCCCCCc---cCCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q psy8670 59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKS---P--M-ADFGYDI---SDYLSFEPLFGDLKDFETLKERLHALGIKI 128 (224)
Q Consensus 59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~---~--~-~~~gY~~---~d~~~v~~~~G~~~~~~~lv~~~h~~gi~v 128 (224)
.++=+.+.++.++++++.|+..+++.|=.|. . . ...++.+ .-|+.+.+.-...+=+++++..+.+.|+.+
T Consensus 104 ~~dPR~vlkr~~~~l~~~G~~~~~~g~E~EFfLfd~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~di~~~l~~~Gi~i 182 (443)
T COG0174 104 PRDPRSVLKRALARLKDEGLAPAVVGPELEFFLFDRDGRDPDGGRPADKGGYFDVAPLDEAEDFRRDIVEALEAAGIEI 182 (443)
T ss_pred CCChHHHHHHHHHHHHhcCCccceeecceeEEEeecccCCcccCccCCCCcccCccccccHHHHHHHHHHHHHHCCCCc
Confidence 3577889888889999999966777774333 1 1 1110112 234555554444566788899999999877
No 488
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=30.46 E-value=1.5e+02 Score=26.80 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=0.0
Q ss_pred cCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEc-----CcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCC
Q psy8670 52 KDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWIS-----PIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGI 126 (224)
Q Consensus 52 ~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~-----Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi 126 (224)
.+.-++...+.-...+.+ ..++++|+++|.+. |.-.... ......+++-++++++||
T Consensus 21 ~~~~g~~~~~~~~~~e~i-~~la~~GfdgVE~~~~dl~P~~~~~~-----------------e~~~~~~~lk~~L~~~GL 82 (382)
T TIGR02631 21 RDPFGDATRTALDPVEAV-HKLAELGAYGVTFHDDDLIPFGAPPQ-----------------ERDQIVRRFKKALDETGL 82 (382)
T ss_pred CCCCCCCCCCCcCHHHHH-HHHHHhCCCEEEecccccCCCCCChh-----------------HHHHHHHHHHHHHHHhCC
Q ss_pred EEEE
Q psy8670 127 KILL 130 (224)
Q Consensus 127 ~vil 130 (224)
+|..
T Consensus 83 ~v~~ 86 (382)
T TIGR02631 83 KVPM 86 (382)
T ss_pred eEEE
No 489
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=30.32 E-value=39 Score=30.17 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVPNH 136 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~nh 136 (224)
+|...+++++.+.|+++|+.||.|-.-.+
T Consensus 131 ~G~~~d~~~i~~~a~~~gi~vi~D~a~a~ 159 (379)
T PRK11658 131 AGAPADLDAIRAIGERYGIPVIEDAAHAV 159 (379)
T ss_pred CCCcCCHHHHHHHHHHcCCeEEEECCCcc
Confidence 46677888999999999999999998654
No 490
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=30.32 E-value=61 Score=28.93 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTS 138 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~ 138 (224)
.++++++++.|+++|+.|+.|-++.+..
T Consensus 187 ~~~~~~l~~~a~~~~~~ii~De~y~~~~ 214 (401)
T TIGR01264 187 RQHLEEILAVAERQCLPIIADEIYGDMV 214 (401)
T ss_pred HHHHHHHHHHHHHCCCEEEEEhhhhhhc
Confidence 5899999999999999999999987654
No 491
>PRK08064 cystathionine beta-lyase; Provisional
Probab=30.22 E-value=51 Score=29.66 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 108 FGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 108 ~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
.|...+++++++.||++|+.+++|-..
T Consensus 151 tG~~~dl~~I~~la~~~g~~vvvD~a~ 177 (390)
T PRK08064 151 LLKVTDIRGVVKLAKAIGCLTFVDNTF 177 (390)
T ss_pred CcEeccHHHHHHHHHHcCCEEEEECCC
Confidence 577789999999999999999999764
No 492
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=30.07 E-value=48 Score=30.05 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 107 LFGDLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 107 ~~G~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
-.|...+++++++.||++|+.||+|-..-
T Consensus 167 ptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 167 PMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred CCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 35777789999999999999999999864
No 493
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=29.86 E-value=59 Score=27.85 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCccch
Q psy8670 111 LKDFETLKERLHALGIKILLDFVPNHTSNQHE 142 (224)
Q Consensus 111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~ 142 (224)
..+++++++.++++|..|++|+=....++...
T Consensus 72 i~~l~~~~~~~~~~g~~VilD~K~~DIpnTv~ 103 (261)
T TIGR02127 72 FKALEEVIAHARSLGLPVLADVKRGDIGSTAS 103 (261)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeeccChHHHHH
Confidence 56788888999999999999999887764443
No 494
>PRK07683 aminotransferase A; Validated
Probab=29.85 E-value=66 Score=28.63 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPNHT 137 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~ 137 (224)
+.++++++++.|+++|+-||.|-++-..
T Consensus 179 s~~~~~~l~~~~~~~~~~ii~De~y~~~ 206 (387)
T PRK07683 179 SKEELQDIADVLKDKNIFVLSDEIYSEL 206 (387)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecccccc
Confidence 3689999999999999999999887654
No 495
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=29.78 E-value=36 Score=21.21 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHH-HHcCCE
Q psy8670 108 FGDLKDFETLKERL-HALGIK 127 (224)
Q Consensus 108 ~G~~~~~~~lv~~~-h~~gi~ 127 (224)
|-+.+++.+|++.+ +.+|+|
T Consensus 4 ~~~~e~ld~L~~aL~~prG~R 24 (46)
T PF15614_consen 4 YDDPEELDELLKALENPRGKR 24 (46)
T ss_pred ccCHHHHHHHHHHHcCcccHh
Confidence 45789999999999 888765
No 496
>PRK05965 hypothetical protein; Provisional
Probab=29.71 E-value=2.5e+02 Score=25.89 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=42.2
Q ss_pred CCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhh
Q psy8670 77 GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147 (224)
Q Consensus 77 G~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~ 147 (224)
.+-+|.+-|+.... |.-+ .+.+=|+.|.+.|+++|+-+|+|=|..-.++-..||-..
T Consensus 215 ~iAAvIvEPiqg~g----G~~~----------p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~ 271 (459)
T PRK05965 215 NVAAFFCEPIQGSG----GVIV----------PPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACE 271 (459)
T ss_pred ceEEEEEeccccCC----CCcc----------CCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHh
Confidence 37888888976432 2111 235678999999999999999999998777777777543
No 497
>PRK06225 aspartate aminotransferase; Provisional
Probab=29.68 E-value=63 Score=28.56 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670 110 DLKDFETLKERLHALGIKILLDFVPN 135 (224)
Q Consensus 110 ~~~~~~~lv~~~h~~gi~vilD~v~n 135 (224)
+.++++++++.|+++|+-+|.|-+..
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~De~y~ 200 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLHDCTYR 200 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhHH
Confidence 36899999999999999999998753
No 498
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=29.67 E-value=46 Score=29.60 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=25.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 104 FEPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 104 v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
++...|...+++++++.||++|+.+++|...
T Consensus 168 ~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 198 (403)
T TIGR01979 168 VSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQ 198 (403)
T ss_pred ccccccccCCHHHHHHHHHHcCCEEEEEchh
Confidence 3444577788999999999999999999863
No 499
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=29.64 E-value=84 Score=28.83 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=40.5
Q ss_pred CCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670 77 GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145 (224)
Q Consensus 77 G~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~ 145 (224)
.+.+|.+-|+...+ |.. .-+.+-|+++.+.|+++|+-+|+|=|....+....||-
T Consensus 206 ~iaavi~Epi~g~~----G~~----------~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a 260 (442)
T TIGR00709 206 KPAAVILEAIQGEG----GVV----------AAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFA 260 (442)
T ss_pred ceEEEEEccccCCC----CCc----------cCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhH
Confidence 37788888875432 111 12357899999999999999999999887776666664
No 500
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=29.63 E-value=48 Score=29.22 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670 105 EPLFGDLKDFETLKERLHALGIKILLDFVP 134 (224)
Q Consensus 105 ~~~~G~~~~~~~lv~~~h~~gi~vilD~v~ 134 (224)
+...|...+++++.+.||++|+.+++|-+-
T Consensus 146 ~n~tG~~~~~~~I~~l~~~~g~~vivD~~~ 175 (379)
T TIGR03402 146 NNETGTIFPIEEIGEIAKERGALFHTDAVQ 175 (379)
T ss_pred cCCeeecccHHHHHHHHHHcCCEEEEECcc
Confidence 344577888899999999999999999864
Done!