RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8670
(224 letters)
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 210 bits (538), Expect = 1e-65
Identities = 53/115 (46%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
WW + Y +YP+SF D+NGDG+GDLKG+ KL +L LGV A+W+SP++ SPM D G
Sbjct: 4 HWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKLD-YLQKLGVMAIWLSPVYDSPMDDNG 62
Query: 96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
YDI++Y + +FG++ D + L + GIKI++D V NHTS++H WF ++ +
Sbjct: 63 YDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWFIEAREH 117
Score = 106 bits (267), Expect = 8e-27
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
L LGV A+W+SP++ SPM D GYDI++Y I KI++D
Sbjct: 40 LQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDL 99
Query: 201 VPNHTSNQHEWFKKSLAN 218
V NHTS++H WF ++ +
Sbjct: 100 VVNHTSDEHAWFIEAREH 117
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 210 bits (538), Expect = 2e-65
Identities = 61/115 (53%), Positives = 83/115 (72%), Gaps = 1/115 (0%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
WW+ V Y +YPRSF D+NGDG+GDL+G+IEKL +L +LGV VWI PI++SP AD G
Sbjct: 4 TWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKLD-YLVELGVDIVWICPIYRSPNADNG 62
Query: 96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
YDISDY + FG + DF+ L + H G+K++LD V NHTS++H WF +S ++
Sbjct: 63 YDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSS 117
Score = 106 bits (266), Expect = 1e-26
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
L +LGV VWI PI++SP AD GYDISDY I K++LD
Sbjct: 40 LVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDL 99
Query: 201 VPNHTSNQHEWFKKSLAN 218
V NHTS++H WF +S ++
Sbjct: 100 VINHTSDEHPWFIESRSS 117
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 210 bits (538), Expect = 2e-65
Identities = 53/115 (46%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
WW+ +VFY +YPRSFKD+N DG+GD++G+IEKL +L LG+ A+WI+P + SP D G
Sbjct: 18 AWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLD-YLKSLGIDAIWINPHYDSPNTDNG 76
Query: 96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
YDIS+Y +G ++DF++L + +++++D V NHTS+QH WF +S ++
Sbjct: 77 YDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSD 131
Score = 106 bits (266), Expect = 1e-26
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
L LG+ A+WI+P + SP D GYDIS+Y +I ++++D
Sbjct: 54 LKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDV 113
Query: 201 VPNHTSNQHEWFKKSLAN 218
V NHTS+QH WF +S ++
Sbjct: 114 VINHTSDQHPWFIQSKSD 131
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 209 bits (535), Expect = 3e-65
Identities = 59/114 (51%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL +L LG+ A+WI+P + SP D GY
Sbjct: 6 WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLD-YLKGLGIDAIWINPHYASPNTDNGY 64
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
DISDY +G ++DF+ L L G+++++D V NH+S+QHEWFK S A+
Sbjct: 65 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRAS 118
Score = 106 bits (266), Expect = 1e-26
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
L LG+ A+WI+P + SP D GYDISDY + ++++D
Sbjct: 41 LKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDV 100
Query: 201 VPNHTSNQHEWFKKSLAN 218
V NH+S+QHEWFK S A+
Sbjct: 101 VINHSSDQHEWFKSSRAS 118
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 210 bits (536), Expect = 5e-65
Identities = 55/115 (47%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
+WW+ + FY +YP SFKDSN DG GD+KG+ KL ++ +LG A+WISP + SP D G
Sbjct: 13 KWWKEATFYQIYPASFKDSNDDGWGDMKGIASKLE-YIKELGADAIWISPFYDSPQDDMG 71
Query: 96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
YDI++Y P +G +D L E+ H LG+K + D V NH S++HEWFK+S ++
Sbjct: 72 YDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRSS 126
Score = 105 bits (264), Expect = 2e-26
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
+ +LG A+WISP + SP D GYDI++Y ++ K + D
Sbjct: 49 IKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDL 108
Query: 201 VPNHTSNQHEWFKKSLAN 218
V NH S++HEWFK+S ++
Sbjct: 109 VINHCSSEHEWFKESRSS 126
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 209 bits (534), Expect = 6e-65
Identities = 55/115 (47%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
+WW+ SV Y +YPRSF DSNGDG+GDL+G+I KL +L +LG+ +W+SP+++SP D G
Sbjct: 4 QWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLD-YLKELGIDVIWLSPVYESPNDDNG 62
Query: 96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
YDISDY FG ++D++ L +H +K+++D V NHTS++H WF +S +
Sbjct: 63 YDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKS 117
Score = 105 bits (264), Expect = 2e-26
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
L +LG+ +W+SP+++SP D GYDISDY +I K+++D
Sbjct: 40 LKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDL 99
Query: 201 VPNHTSNQHEWFKKSLAN 218
V NHTS++H WF +S +
Sbjct: 100 VVNHTSDEHNWFIESRKS 117
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 204 bits (521), Expect = 4e-64
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 42 VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDY 101
+ Y +Y RSF+D N DGVGD +G+ + +L +LG+ VW+ P+F S + GYD+ D+
Sbjct: 2 IGYQIYVRSFRDGNLDGVGDFRGLKNAVS-YLKELGIDFVWLMPVFSSI-SFHGYDVVDF 59
Query: 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
SF+ +G ++F+ + E H GIK++LD +HT H WF+K+L P Y
Sbjct: 60 YSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHY 112
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 207 bits (529), Expect = 2e-63
Identities = 62/253 (24%), Positives = 87/253 (34%), Gaps = 72/253 (28%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
E + + Y L SF DS+GDG GDL G+ +KL +L+ LGV A+W+SPI + G
Sbjct: 33 ETKRADISYQLLLYSFADSDGDGYGDLNGVTQKLD-YLNQLGVKALWLSPIHPCM-SYHG 90
Query: 96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN----- 150
YD++DY P G DF+ L H GIKI LD+V NHT H WF ++ ++
Sbjct: 91 YDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVMNHTGTAHPWFTEASSSSESPY 150
Query: 151 ------------------IPPYKCAS-----------------LLARLHDLGVGAVWISP 175
I + L +
Sbjct: 151 RNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEWFQVSDETAAVKGLLKFTLDWSNAPS 210
Query: 176 I---------FKSPMADFGYDISDYLR----------------IKILLDFVPNH-----T 205
D G D + YL ++ +DF T
Sbjct: 211 PILVVSTGTKADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELTVDFESTWGLLIRT 270
Query: 206 SNQHEWFKKSLAN 218
SN W +
Sbjct: 271 SNASFWPSGTKYG 283
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 199 bits (508), Expect = 8e-62
Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLP-------EHLHDLGVGAVWISPIFKS 89
+ + +Y ++ RSF DS+GDG+GDLKG+IEKL E + DLGV +W+ PIFKS
Sbjct: 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKS 60
Query: 90 PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA 149
P GYD++DY P +G L+DF L E H GIK+++D NHTS +H WF K+
Sbjct: 61 PS-YHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASR 119
Query: 150 N 150
+
Sbjct: 120 D 120
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 174 bits (442), Expect = 1e-52
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
+WW T Y + + G G G+L G+ +L +L L V + + PI K+ D
Sbjct: 11 KWWHTGALYRI--GDLQAFQGHGAGNLAGLKGRLD-YLSSLKVKGLVLGPIHKNQKDDVA 67
Query: 96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPP 153
+D L +P FG +DF++L + I+++LD PN+ ++ WF + +
Sbjct: 68 Q--TDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYRG-ENSWFSTQVDTVAT 122
Score = 81.7 bits (202), Expect = 3e-18
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 25/81 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDY----------------------LRIKILLDF 200
L L V + + PI K+ D +D I+++LD
Sbjct: 45 LSSLKVKGLVLGPIHKNQKDDVAQ--TDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDL 102
Query: 201 VPNHTSNQHEWFKKSLANIPP 221
PN+ ++ WF + +
Sbjct: 103 TPNYRG-ENSWFSTQVDTVAT 122
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 152 bits (387), Expect = 2e-44
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 29 VPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK 88
+ +++ + + Y ++ R++ ++ G+ G+ L + DLG +W+ PI
Sbjct: 1 MSLRDTQTQLRNEMIYSVFVRNYSEA-----GNFAGVTADLQ-RIKDLGTDILWLLPINP 54
Query: 89 SPMADF------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
+ Y I DY P +G L DF+ L +R H LG+K++LD V NHTS
Sbjct: 55 IGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSV 114
Query: 143 WFKK 146
+
Sbjct: 115 LATE 118
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 152 bits (385), Expect = 7e-44
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDG---------------------VGDLKGMIEKLPEHLHD 75
W++ + FY ++P F + G G L G+ EKLP +L D
Sbjct: 3 WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLP-YLLD 61
Query: 76 LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN 135
LGV A++++P+F S A+ Y DY +P+ G + L E HA G++++LD V N
Sbjct: 62 LGVEAIYLNPVFAST-ANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVFN 120
Query: 136 HTSNQHEWFKKSLANIP--PYK 155
HT F+ + N PY+
Sbjct: 121 HTGRGFFAFQHLMENGEQSPYR 142
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 154 bits (391), Expect = 1e-43
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 21/139 (15%)
Query: 36 EWWQTSVFYHLYPRSFKDSN-----------------GDGVGDLKGMIEKLPEHLHDLGV 78
W+ +V+Y ++ SF + + G GDL G+++ + HL DLGV
Sbjct: 221 RWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHID-HLEDLGV 279
Query: 79 GAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138
++++PIF S + YD DY S + G ++DFE L + LH+ IKI+LD +HT+
Sbjct: 280 ETIYLTPIFSST-SYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITMHHTN 338
Query: 139 NQHEWFKKSLANIP--PYK 155
+E F K+L PY
Sbjct: 339 PCNELFVKALREGENSPYW 357
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A
{Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A*
2wpg_A
Length = 644
Score = 150 bits (380), Expect = 2e-42
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA--DF 94
W+ + G L+G+ E++P +L +LGV + + P ++ D
Sbjct: 85 WFGQPHM-----LGYSAYADRFAGTLQGVAERVP-YLQELGVRYLHLLPFLRARAGDNDG 138
Query: 95 GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
G+ +SDY EP G D L RL GI + DFV NHT++ H W + + A Y
Sbjct: 139 GFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARY 198
Query: 155 K 155
Sbjct: 199 L 199
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose
isomerization, beta/alpha-barrel, carbohydrate binding,
transferase; 1.97A {Deinococcus geothermalis} PDB:
3uer_A*
Length = 655
Score = 150 bits (380), Expect = 2e-42
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 30 PIQEPLEWWQ-TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK 88
+ P + V Y Y F G LKG+ E+L +L LGV + + P+ +
Sbjct: 84 RLLRPDWLQRPEMVGYVAYTDRF-------AGTLKGVEERLD-YLEGLGVKYLHLMPLLR 135
Query: 89 --SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
D GY + DY + P G + D L L GI ++LD V NH + +H W +K
Sbjct: 136 PREGENDGGYAVQDYRAVRPDLGTMDDLSALARALRGRGISLVLDLVLNHVAREHAWAQK 195
Query: 147 SLANIPPYK 155
+ A P Y+
Sbjct: 196 ARAGDPKYR 204
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase,
(beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria
polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A*
1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A*
1s46_A* 1zs2_A*
Length = 628
Score = 148 bits (374), Expect = 2e-41
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADF 94
V Y F GDLKG+ +K+P + +LG+ + + P+FK P +D
Sbjct: 94 LSNKQVGGVCYVDLF-------AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDG 145
Query: 95 GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
GY +S Y P G + D + LH GI ++DF+ NHTSN+HEW ++ A P +
Sbjct: 146 GYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLF 205
Query: 155 K 155
Sbjct: 206 D 206
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 141 bits (357), Expect = 9e-40
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 36 EWWQTSVFYHLYPRSFKDSN----------------------GDGVGDLKGMIEKLPEHL 73
+W + +VFY ++P F S G GDL G++E L ++
Sbjct: 7 DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLD-YI 65
Query: 74 HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
+LG+ A++ +PIF+S ++ Y DY +P+ G + F+ L + H IK++LD V
Sbjct: 66 QNLGINAIYFTPIFQSA-SNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGV 124
Query: 134 PNHTSNQHEWFKKSLANIP--PYK 155
NH+S +F L N P P+
Sbjct: 125 FNHSSRGFFFFHDVLENGPHSPWV 148
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 136 bits (345), Expect = 1e-37
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 24/155 (15%)
Query: 23 FKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDG--------------------VGDL 62
+ + EW + +V Y ++P F + + GDL
Sbjct: 113 YAYIHRSEVFTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDL 172
Query: 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLH 122
KG+I++LP +L +LGV A++ +PIF SP + YD +DYL+ +P FGDL F L + H
Sbjct: 173 KGVIDRLP-YLEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAH 230
Query: 123 ALGIKILLDFVPNHTSNQHEWFKKSLANIP--PYK 155
GIKI+LD V NH +Q F+ L YK
Sbjct: 231 RRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYK 265
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 135 bits (343), Expect = 3e-37
Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 23/154 (14%)
Query: 23 FKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGV-------------------GDLK 63
+ V + +P W + ++FY ++P F + + GDL+
Sbjct: 113 YPFINPVDVFQPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQ 172
Query: 64 GMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHA 123
G+I+ L HL LGV AV+ +P+FK+ + YD DY +P FGD + L + H
Sbjct: 173 GVIDHLD-HLSKLGVNAVYFTPLFKAT-TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHE 230
Query: 124 LGIKILLDFVPNHTSNQHEWFKKSLANIP--PYK 155
GI++LLD V NH+ F L N YK
Sbjct: 231 RGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYK 264
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 135 bits (342), Expect = 3e-37
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 23/150 (15%)
Query: 27 VDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGV-------------------GDLKGMIE 67
V + E +W + +V+Y ++P F + N GDL+G+I+
Sbjct: 121 HRVDLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIID 180
Query: 68 KLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
L +L DLG+ ++++PIF+SP ++ YD +DY +P FGD + +TL +R H GI+
Sbjct: 181 HLD-YLVDLGITGIYLTPIFRSP-SNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIR 238
Query: 128 ILLDFVPNHTSNQHEWFKKSLANIP--PYK 155
++LD V NH + F+ N YK
Sbjct: 239 VMLDAVFNHCGYEFAPFQDVWKNGESSKYK 268
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 134 bits (338), Expect = 2e-36
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 48 PRS---FKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISDYLS 103
+ + + + +I+ L + DLGV +++SP+ SP ++ GYD+ D+
Sbjct: 2 ISATYRLQLNKNF---NFGDVIDNLW-YFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSR 57
Query: 104 FEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
G K++ L E H +G+ I+ D VPNH + ++
Sbjct: 58 INDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRLM 101
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 132 bits (333), Expect = 5e-36
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 33 EPLEWWQTSVFYHLYPRSFKDSN-------------------GDGVGDLKGMIEKLPEHL 73
+ + Y + P F + + G GD++G I+ L ++
Sbjct: 99 QRQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLD-YI 157
Query: 74 HDLGVGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130
LG +W +P+ ++ A + GY +D+ +P +G +DF L G+ ++
Sbjct: 158 AGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQ 217
Query: 131 DFVPNHTSNQHEWFK 145
D V +H H W K
Sbjct: 218 DVVLSHIGKHHWWMK 232
Score = 67.9 bits (166), Expect = 2e-13
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 25/76 (32%)
Query: 163 LHDLGVGAVWISPIFKSPMADF---GYDISDYLR----------------------IKIL 197
+ LG +W +P+ ++ A + GY +D+ R + ++
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLI 216
Query: 198 LDFVPNHTSNQHEWFK 213
D V +H H W K
Sbjct: 217 QDVVLSHIGKHHWWMK 232
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 132 bits (334), Expect = 7e-36
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDIS 99
Y L P F + + +L + +LGV +++SP+ K+ P + GYD+
Sbjct: 4 LSTYRLQPMKFSE-----------IRNRLD-YFVELGVTHLYLSPVLKARPGSTHGYDVV 51
Query: 100 DYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
DY + G +++ L + + G+ I+ D VPNH + H ++
Sbjct: 52 DYNTINDELGGEEEYIRLIDEAKSKGLGIIQDIVPNHMAVHHTNWRL 98
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA;
1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB:
2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Length = 478
Score = 127 bits (320), Expect = 2e-34
Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 20/142 (14%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDG------------VGDLKGMIEKLPEHLHDLGVGAVWI 83
W++ Y L F ++G G +G+I+KL ++ +G A+WI
Sbjct: 4 ADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLD-YIQGMGFTAIWI 62
Query: 84 SPIFKSPMADF-------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
+P+ GY D S +G D + L LH G+ +++D V NH
Sbjct: 63 TPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANH 122
Query: 137 TSNQHEWFKKSLANIPPYKCAS 158
+ P+
Sbjct: 123 MGYDGAGSSVDYSVFKPFSSQD 144
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 128 bits (323), Expect = 2e-34
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 29/149 (19%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGV------------------GDLKGMIEKLPE-HLHDL 76
+ + V Y + F D N GD +G+I K+ + +L D+
Sbjct: 7 VNFTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDGYLTDM 66
Query: 77 GVGAVWISPIFKSPMADF----------GYDISDYLSFEPLFGDLKDFETLKERLHALGI 126
GV A+WIS ++ + GY D+ P FG L DF+ L + HA GI
Sbjct: 67 GVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGI 126
Query: 127 KILLDFVPNHTSNQHEWFKKSLANIPPYK 155
K+++DF PNHTS E + N Y
Sbjct: 127 KVIIDFAPNHTSPASETNPSYMENGRLYD 155
Score = 66.4 bits (162), Expect = 5e-13
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 32/92 (34%)
Query: 163 LHDLGVGAVWISPIFKSPMADF----------GYDISDYLR------------------- 193
L D+GV A+WIS ++ + GY D+ +
Sbjct: 63 LTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAH 122
Query: 194 ---IKILLDFVPNHTSNQHEWFKKSLANIPPY 222
IK+++DF PNHTS E + N Y
Sbjct: 123 AKGIKVIIDFAPNHTSPASETNPSYMENGRLY 154
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 126 bits (318), Expect = 1e-33
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 35/160 (21%)
Query: 28 DVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGV--------------------GDLKGMIE 67
D + + + T V Y ++ F S+G+ GD +G+I
Sbjct: 3 DTSVSNK-QNFSTDVIYQIFTDRF--SDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIIN 59
Query: 68 KLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPLFGDLKDFE 115
K+ + +L +GV A+WIS ++ + GY D+ P +G + DF+
Sbjct: 60 KINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQ 119
Query: 116 TLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
L HA IK+++DF PNHTS N Y
Sbjct: 120 NLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYD 159
Score = 64.5 bits (157), Expect = 3e-12
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 33/93 (35%)
Query: 163 LHDLGVGAVWISPIFKSPMADF-----------GYDISDYLR------------------ 193
L +GV A+WIS ++ + GY D+ +
Sbjct: 66 LTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAA 125
Query: 194 ----IKILLDFVPNHTSNQHEWFKKSLANIPPY 222
IK+++DF PNHTS N Y
Sbjct: 126 HAKNIKVIIDFAPNHTSPASSDQPSFAENGRLY 158
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 125 bits (314), Expect = 2e-33
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 29/151 (19%)
Query: 24 KEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGV--------------GDLKGMIEKL 69
+ + ++ +W + SV Y PR+ N G G M+ L
Sbjct: 67 QPLSFLKGEKTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLL 126
Query: 70 PEHLHDLGVGAVWISPIF------KSPMADFGYDISDYLS--------FEPLFGDLKDFE 115
P + LG A+++ P+ K A Y + + + F ++F+
Sbjct: 127 P-FVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFK 185
Query: 116 TLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
E H LGI+++LDF+P + + ++
Sbjct: 186 AFVEACHILGIRVILDFIPRTAARDSDLIRE 216
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 122 bits (307), Expect = 3e-32
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 35/159 (22%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGV--------------------GDLKGMIEKLPE-HLH 74
+ T V Y + F +G+ GD +G+I K+ + +L
Sbjct: 10 VNYSTDVIYQIVTDRF--VDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLT 67
Query: 75 DLGVGAVWISPIFKSPMADF------------GYDISDYLSFEPLFGDLKDFETLKERLH 122
+GV A+WI ++ A GY D+ P FG DF+ L H
Sbjct: 68 GMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAH 127
Query: 123 ALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLA 161
A IK+++DF PNHTS E N Y +LL
Sbjct: 128 AHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLG 166
Score = 64.9 bits (158), Expect = 2e-12
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 34/94 (36%)
Query: 163 LHDLGVGAVWISPIFKSPMADF------------GYDISDYLR----------------- 193
L +GV A+WI ++ A GY D+ R
Sbjct: 66 LTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINT 125
Query: 194 -----IKILLDFVPNHTSNQHEWFKKSLANIPPY 222
IK+++DF PNHTS E N Y
Sbjct: 126 AHAHNIKVIIDFAPNHTSPASETDPTYAENGRLY 159
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 121 bits (305), Expect = 6e-32
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 34/151 (22%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGV-----------------------GDLKGMIEKLPEH 72
+ V Y + F +GD GDL+G+ +KLP +
Sbjct: 4 ASVKGDVIYQIIIDRF--YDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLP-Y 60
Query: 73 LHDLGVGAVWISPIFKSPMADF--------GYDISDYLSFEPLFGDLKDFETLKERLHAL 124
L LGV +W+SP+ + GY D+ E FG+ F+TL H
Sbjct: 61 LKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQN 120
Query: 125 GIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
GIK+++DFVPNH++ Y
Sbjct: 121 GIKVIVDFVPNHSTPFKANDSTFAEGGALYN 151
Score = 65.6 bits (160), Expect = 1e-12
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 30/90 (33%)
Query: 163 LHDLGVGAVWISPIFKSPMADF--------GYDISDYLR--------------------- 193
L LGV +W+SP+ + GY D+ +
Sbjct: 61 LKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQN 120
Query: 194 -IKILLDFVPNHTSNQHEWFKKSLANIPPY 222
IK+++DFVPNH++ Y
Sbjct: 121 GIKVIVDFVPNHSTPFKANDSTFAEGGALY 150
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP:
b.71.1.1 c.1.8.1
Length = 484
Score = 117 bits (294), Expect = 7e-31
Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 20/140 (14%)
Query: 38 WQTSVFYHLYPRSFKDSNGDG------------VGDLKGMIEKLPEHLHDLGVGAVWISP 85
W+T Y L F ++ G +G+I+ L ++ +G A+WISP
Sbjct: 6 WRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLD-YIEGMGFTAIWISP 64
Query: 86 IFKSPMADF-------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138
I + D GY FG + ++L + LHA G+ +++D VP+H
Sbjct: 65 ITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMG 124
Query: 139 NQHEWFKKSLANIPPYKCAS 158
+ P+ +S
Sbjct: 125 YAGNGNDVDYSVFDPFDSSS 144
Score = 57.8 bits (140), Expect = 4e-10
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 29/92 (31%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADF-------GYDISDYLRI------------------ 194
L + +G A+WISPI + D GY +
Sbjct: 49 LDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALH 108
Query: 195 ----KILLDFVPNHTSNQHEWFKKSLANIPPY 222
+++D VP+H + P+
Sbjct: 109 ARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPF 140
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 116 bits (293), Expect = 2e-30
Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 23/139 (16%)
Query: 28 DVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIF 87
+P+ E +Y +PRS + G + +LP + +G V++ PI
Sbjct: 219 PLPLLVERERALYGAWYEFFPRSE-GTPHTPHGTFRTAARRLP-AIAAMGFDVVYLPPIH 276
Query: 88 KS----------PMADFGYDI----------SDYLSFEPLFGDLKDFETLKERLHALGIK 127
++ G D+ + S P G L DF+ LG++
Sbjct: 277 PIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVTEAGKLGLE 336
Query: 128 ILLDFVPNHTSNQHEWFKK 146
I LDF S H W K
Sbjct: 337 IALDFALQC-SPDHPWVHK 354
Score = 41.8 bits (98), Expect = 1e-04
Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 43/101 (42%)
Query: 156 CASLLARLHDLGVGAVWISPIFKS----------PMADFGYDISDY-------------- 191
A L + +G V++ PI ++ G D+
Sbjct: 255 AARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIH 314
Query: 192 ------------------LRIKILLDFVPNHTSNQHEWFKK 214
L ++I LDF S H W K
Sbjct: 315 PALGTLDDFDHFVTEAGKLGLEIALDFALQC-SPDHPWVHK 354
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 114 bits (288), Expect = 1e-29
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 43/152 (28%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGV------------------------------------ 59
+W + V Y ++P F + +
Sbjct: 128 DWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFG 187
Query: 60 GDLKGMIEKLPEHLHD-LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLK 118
GDL G+ +KL ++ LG ++++PIFK+P + YD DY++ +P FGD +TL
Sbjct: 188 GDLAGIDQKLG-YIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTLI 245
Query: 119 ERLHALG----IKILLDFVPNHTSNQHEWFKK 146
+H+ ++LD V NHT + H WF K
Sbjct: 246 NDIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 112 bits (281), Expect = 4e-29
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 12/146 (8%)
Query: 53 DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDY---------L 102
+ DG K + HL D+G+ AVWI P +K +D GY D
Sbjct: 12 YTPNDG-QHWKRLQNDAE-HLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKG 69
Query: 103 SFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLAR 162
+ +G + + LH+ +++ D V NH + + + P +
Sbjct: 70 TVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSE 129
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDI 188
+ + + P + +DF +
Sbjct: 130 EYQIKAWTDFRFPGRGNTYSDFKWHW 155
>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside
hydrolase, transferase; 1.77A {Bifidobacterium
adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A*
2gdu_A*
Length = 504
Score = 109 bits (275), Expect = 3e-28
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 49 RSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISDYLSFEPL 107
++ D GDG +K M + L D V I P F AD G+D D+ +
Sbjct: 8 ITYADRLGDG--TIKSMTDILRTRF-DGVYDGVHILPFFTPFDGADAGFDPIDHTKVDER 64
Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
G D L + I++D + NH S + + F+ LA +
Sbjct: 65 LGSWDDVAELSK-----THNIMVDAIVNHMSWESKQFQDVLAKGEESE 107
Score = 71.8 bits (176), Expect = 8e-15
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 158 SLLARLHDLGVGAVWISPIFK-SPMADFGYDISDYLRI-----------------KILLD 199
+L D V I P F AD G+D D+ ++ I++D
Sbjct: 24 DILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSKTHNIMVD 83
Query: 200 FVPNHTSNQHEWFKKSLANIPP 221
+ NH S + + F+ LA
Sbjct: 84 AIVNHMSWESKQFQDVLAKGEE 105
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 107 bits (269), Expect = 2e-27
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 13/114 (11%)
Query: 49 RSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDY------ 101
+ F+ D + + +L LG+ A+W+ P +K +D GY + D
Sbjct: 10 QYFEWYLPDDGTLWTKVANEAN-NLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEF 68
Query: 102 ---LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT--SNQHEWFKKSLAN 150
+ +G + + HA G+++ D V +H ++ EW N
Sbjct: 69 NQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVN 122
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 106 bits (266), Expect = 8e-27
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 14/128 (10%)
Query: 36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK--SPMAD 93
+ ++ + + + + + E+ PE L + G AVW+ P K + + D
Sbjct: 123 HTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPE-LAEAGFTAVWLPPANKGMAGIHD 181
Query: 94 FGYDISDY---------LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS--NQHE 142
GY D + +G + E + LH IK+ D V NH + E
Sbjct: 182 VGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAE 241
Query: 143 WFKKSLAN 150
+
Sbjct: 242 TVLLDENS 249
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 103 bits (259), Expect = 3e-26
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF----------GYDISDYLSFEPLFG 109
+ + + +HD G A+ SPI + + Y + Y G
Sbjct: 14 WSFNTLKHNM-KDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLG 72
Query: 110 DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
++F+ + GIK+++D V NHT+ + + +IP +
Sbjct: 73 TEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNW 117
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 102 bits (257), Expect = 6e-26
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 44 YHLYPRSFK-DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYL 102
+ + + F +S G M+ K+ + GV VW+ P S ++ GY
Sbjct: 1 HQVLFQGFNWESWKQSGGWYNMMMGKVD-DIAAAGVTHVWLPPPSHSV-SNEGYMPGRLY 58
Query: 103 SF-EPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145
+G+ + ++L LH G++ + D V NH ++ +
Sbjct: 59 DIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSR 102
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 98.8 bits (246), Expect = 3e-24
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 17/174 (9%)
Query: 53 DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDY---------L 102
DG + +L G+ AVWI P +K D GY D
Sbjct: 16 YLPNDG-NHWNRLNSDAS-NLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKG 73
Query: 103 SFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLAR 162
+ +G + L GI++ D V NH + P +
Sbjct: 74 TVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTG 133
Query: 163 LHDLGVGAVWISPIFKSPMADFGY-----DISDYLRIKILLDFVPNHTSNQHEW 211
+ + + P + + F + D D+ + + L + + + W
Sbjct: 134 EYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAW 187
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
1ud6_A 1ud8_A 1ud3_A
Length = 480
Score = 98.0 bits (244), Expect = 6e-24
Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 12/145 (8%)
Query: 53 DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDY---------L 102
DG + + L D G+ A+WI P +K AD GY D
Sbjct: 14 HLENDG-QHWNRLHDDAA-ALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKG 71
Query: 103 SFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLAR 162
+ +G E L + I + D V NH + P ++
Sbjct: 72 TVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISG 131
Query: 163 LHDLGVGAVWISPIFKSPMADFGYD 187
+ + + + +DF +
Sbjct: 132 AYTIDAWTGFDFSGRNNAYSDFKWR 156
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A
{Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Length = 844
Score = 92.2 bits (228), Expect = 1e-21
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 19/121 (15%)
Query: 37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP------ 90
++ + + ++ + + + + GV ++P + S
Sbjct: 613 MFEGFSNFQAFATKKEEYTN------VVIAKNVD-KFAEWGVTDFEMAPQYVSSTDGSFL 665
Query: 91 --MADFGYDISDY----LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
+ GY +D +S +G D + LH+ GIK++ D+VP+ E
Sbjct: 666 DSVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMYALPEKE 725
Query: 145 K 145
Sbjct: 726 V 726
Score = 54.4 bits (130), Expect = 6e-09
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 34/91 (37%)
Query: 157 ASLLARLHDLGVGAVWISPIFKSP--------MADFGYDISDYLR--------------- 193
A + + + GV ++P + S + GY +D
Sbjct: 636 AKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPNKYGTADDL 695
Query: 194 -----------IKILLDFVPNHTSNQHEWFK 213
IK++ D+VP+ E
Sbjct: 696 VKAIKALHSKGIKVMADWVPDQMYALPEKEV 726
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta
sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1
c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A*
1qi4_A* 2amg_A 1qpk_A*
Length = 527
Score = 85.1 bits (210), Expect = 2e-19
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 53 DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF---------GYDISDYLS 103
+ + D ++ + + G A+W+ ++ + GY D+ +
Sbjct: 26 NVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDF-N 84
Query: 104 FEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145
+G L G+K+L D VPNH + + +
Sbjct: 85 KNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKE 126
Score = 48.1 bits (114), Expect = 8e-07
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 30/84 (35%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADF---------GYDISDY-----------LR------ 193
A + G A+W+ ++ + GY D+ LR
Sbjct: 43 AATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASAL 102
Query: 194 ----IKILLDFVPNHTSNQHEWFK 213
+K+L D VPNH + + +
Sbjct: 103 GGAGVKVLYDVVPNHMNRGYPDKE 126
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola
(beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A
{Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A*
1mxd_A* 3qgv_A*
Length = 435
Score = 83.3 bits (206), Expect = 7e-19
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 53 DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK--SPMADFGYDISDY--------- 101
D G G + K+P ++ G+ A+W+ P K S GYD DY
Sbjct: 19 DVPGGG-IWWDHIRSKIP-EWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQK 76
Query: 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
+ E FG ++ L + HA GIK++ D V NH + +
Sbjct: 77 GTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNP 121
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase;
HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis}
SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A*
1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Length = 448
Score = 69.0 bits (168), Expect = 8e-14
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 63 KGMIEKLPEHLHDLGVGAVWISPIFKS--PMADFGYDISDYLSFEPLFGDLKDFETLKER 120
+ + ++ ++L G AV +SP + + + G+ F + R
Sbjct: 14 QDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNR 73
Query: 121 LHALGIKILLDFVPNHTSNQHEWF 144
A G+ I +D + NH +
Sbjct: 74 CSAAGVDIYVDTLINHMAAGSGTG 97
Score = 33.1 bits (75), Expect = 0.062
Identities = 10/74 (13%), Positives = 17/74 (22%), Gaps = 24/74 (32%)
Query: 163 LHDLGVGAVWISPIFKS--PMADFGYDISDYLRI----------------------KILL 198
L G AV +SP + + + I +
Sbjct: 24 LGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYV 83
Query: 199 DFVPNHTSNQHEWF 212
D + NH +
Sbjct: 84 DTLINHMAAGSGTG 97
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism,
4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio
molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A
1viw_A*
Length = 471
Score = 67.9 bits (165), Expect = 1e-13
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 15/109 (13%)
Query: 41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD----FGY 96
+ HL+ + D + ++ L G G V ISP + +AD +
Sbjct: 11 NSIVHLFEWKWND-----------IADECERFLQPQGFGGVQISPPNEYLVADGRPWWER 59
Query: 97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145
GD F + R + G++I +D V NH + +
Sbjct: 60 YQPVSYIINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGT 108
Score = 32.0 bits (72), Expect = 0.12
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 26/77 (33%)
Query: 163 LHDLGVGAVWISPIFKSPMAD----FGYDISDYLRI----------------------KI 196
L G G V ISP + +AD + I +I
Sbjct: 32 LQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMTRRCNDAGVRI 91
Query: 197 LLDFVPNHTSNQHEWFK 213
+D V NH + +
Sbjct: 92 YVDAVINHMTGMNGVGT 108
>1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase;
HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1
c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A
1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A*
1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A*
3ij8_A* ...
Length = 496
Score = 62.1 bits (150), Expect = 2e-11
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADF-------GYDISDYLSFEPLFGDLKDFE 115
+ + +L G G V +SP ++ + Y Y G+ +F
Sbjct: 22 VDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSY-KLCTRSGNENEFR 80
Query: 116 TLKERLHALGIKILLDFVPNHTSNQHEW 143
+ R + +G++I +D V NH
Sbjct: 81 DMVTRCNNVGVRIYVDAVINHMCGSGAA 108
Score = 33.2 bits (75), Expect = 0.066
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 28/77 (36%)
Query: 163 LHDLGVGAVWISPIFKSPMADF-------GYDISDYLR---------------------I 194
L G G V +SP ++ + Y Y +
Sbjct: 32 LGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGV 91
Query: 195 KILLDFVPNHTSNQHEW 211
+I +D V NH
Sbjct: 92 RIYVDAVINHMCGSGAA 108
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 52.7 bits (127), Expect = 2e-08
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 19/109 (17%)
Query: 36 EW--WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD 93
+ + + Y ++ +F G +G+I KL +L DLG+ A+ I PI A
Sbjct: 95 TFLKKEDLIIYEIHVGTFTPE-----GTFEGVIRKLD-YLKDLGITAIEIMPI-----AQ 143
Query: 94 F------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
F GYD + + +G + F L + H G+ ++LD V NH
Sbjct: 144 FPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNH 192
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 4e-08
Identities = 40/214 (18%), Positives = 61/214 (28%), Gaps = 52/214 (24%)
Query: 19 LSVGFKEDVDVPIQEPLE--WWQTS------VFYHLYPRS--FKDSNGDGVG------DL 62
LSV F +P L W+ V L+ S K + +L
Sbjct: 378 LSV-FPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 63 KGMIEKLPEHLHDLGVGAVWISPIF----KSPMADFGYDISDYLSFEPLFGDLKDFETLK 118
K +E LH V I F P Y ++ LK+ E
Sbjct: 436 KVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIGHH-----LKNIE--H 486
Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKKSL--ANIPPYKCASLLARLHDLGVGAVWISPI 176
L + LDF + ++ + + S+L L L
Sbjct: 487 PERMTLFRMVFLDF---------RFLEQKIRHDSTAWNASGSILNTLQQL--------KF 529
Query: 177 FKSPMADFGYDISDYLRIKILLDFVPNHTSNQHE 210
+K + D D + +LDF+P N
Sbjct: 530 YKPYICD--NDPKYERLVNAILDFLPKIEENLIC 561
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics,
center for structural genomics of infectious diseases,
unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella
enterica subsp}
Length = 618
Score = 51.5 bits (124), Expect = 5e-08
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF--- 94
W+ +V Y ++ +F G + I KLP +L +LGV + + P+ A F
Sbjct: 134 WEQAVVYEMHTGTFTPE-----GTFRAAIAKLP-YLAELGVTVIEVMPV-----AQFGGE 182
Query: 95 ---GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
GYD + +G DF+ + H G+ ++LD V NH
Sbjct: 183 RGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNH 227
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase,
protein-carbohydrate complex, desiccation resistance;
HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A*
2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Length = 602
Score = 50.8 bits (122), Expect = 1e-07
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF--- 94
VFY ++ +F G + EKLP +L +LGV A+ + P+ A F
Sbjct: 124 LADCVFYEVHVGTFTPE-----GTYRAAAEKLP-YLKELGVTAIQVMPL-----AAFDGQ 172
Query: 95 ---GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
GYD + + + +G +D L + H LG+ + LD V NH
Sbjct: 173 RGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNH 217
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 47.8 bits (113), Expect = 1e-06
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 24/104 (23%)
Query: 51 FKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS--------PMADFGYDISDYL 102
F+ +I K + ++ G+ + ++P ++S D GY +D
Sbjct: 840 FQPKATTHDELTNVVIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTD-- 897
Query: 103 SFEPLF----------GDLKDFETLKERLHALGIKILLDFVPNH 136
+ G D + LH ++++ D V N
Sbjct: 898 ----RYDLGFNTPTKYGTDGDLRATIQALHHANMQVMADVVDNQ 937
Score = 33.1 bits (75), Expect = 0.077
Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 37/100 (37%)
Query: 142 EWFK---KSLANIPPYKCASLLARLHDLGVGAVWISPIFKS--------PMADFGYDISD 190
F+ + + A ++ G+ + ++P ++S D GY +D
Sbjct: 838 SNFQPKATTHDELTNVVIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTD 897
Query: 191 -----------------YLR---------IKILLDFVPNH 204
++++ D V N
Sbjct: 898 RYDLGFNTPTKYGTDGDLRATIQALHHANMQVMADVVDNQ 937
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 46.9 bits (112), Expect = 2e-06
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 25/159 (15%)
Query: 1 MDTKLSVLFVPVLLGCIHLSVGFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVG 60
D + S +VP + ++ F+ D + I+ + +V Y ++ + F D
Sbjct: 137 YDERDSGEYVPK---SVVINPYFEWDDEDFIKGKKVPLKDTVIYEVHVKGFTKLRLDLPE 193
Query: 61 DLKG----MIEKLP-EHLHDLGVGAVWISPIFKSPMADF----------GYD-IS----- 99
+++G + + +L DLG+ V + P+F F GYD I+
Sbjct: 194 NIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPINFFSPE 253
Query: 100 -DYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137
Y S L G + F+ + LH GI++++D V NHT
Sbjct: 254 CRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHT 292
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 45.9 bits (108), Expect = 5e-06
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 51 FKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS--------PMADFGYDISD-Y 101
F I + + G+ ++P + S + D GY +D Y
Sbjct: 673 FIYWPTTESERTNVRIAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRY 732
Query: 102 LSFEPL---FGDLKDFETLKERLHALGIKILLDFVPNHTSN 139
+G +D + LH G++ + D+VP+ N
Sbjct: 733 DLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWVPDQIYN 773
Score = 28.2 bits (62), Expect = 2.6
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 17/67 (25%)
Query: 132 FVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKS--------PMAD 183
F+ T+ + N G+ ++P + S + D
Sbjct: 673 FIYWPTTESERTNVRIAQNAD---------LFKSWGITTFELAPQYNSSKDGTFLDSIID 723
Query: 184 FGYDISD 190
GY +D
Sbjct: 724 NGYAFTD 730
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A
{Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1
c.1.8.1
Length = 750
Score = 43.5 bits (103), Expect = 3e-05
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 25/124 (20%)
Query: 38 WQTSVFYHLYPRSF-KDSNGDGV---GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD 93
+ V Y ++ R F + G G K +L LGV AV P+ ++
Sbjct: 176 QKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKAS-YLASLGVTAVEFLPVQETQNDA 234
Query: 94 F-------------GYD-IS------DYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
GY + Y + G +F+ + + H GIK+ +D V
Sbjct: 235 NDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVV 294
Query: 134 PNHT 137
NHT
Sbjct: 295 YNHT 298
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase,
cell WALL, peptidoglycan-anchor, secreted; 2.10A
{Streptococcus agalactiae COH1} PDB: 3fax_A*
Length = 877
Score = 42.1 bits (99), Expect = 7e-05
Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 34/154 (22%)
Query: 25 EDVDVPIQEPLEWWQTSVFYHLYPRSF-KDSNGDGV-----GDLKGMIEKLPEHLHDLGV 78
+++ + Q +V Y + R F D + DG G EKL +L LGV
Sbjct: 252 QNLSFAKIANFKGRQDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKLD-YLQKLGV 310
Query: 79 GAVWISPIFKSPMADF------------------GYDISDYLSFEPLF--------GDLK 112
+ + P+ + GYD Y + ++ +
Sbjct: 311 THIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWGYDPQSYFALSGMYSEKPKDPSARIA 370
Query: 113 DFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
+ + L +H G+ ++LD V NHT+ + F+
Sbjct: 371 ELKQLIHDIHKRGMGVILDVVYNHTAKTY-LFED 403
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 40.7 bits (96), Expect = 2e-04
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 65 MIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETLKERLHA 123
+ +L +++ D G V + P+ + P +GY ++ Y + FG DF L + LH
Sbjct: 265 LARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQ 324
Query: 124 LGIKILLDFVPNH 136
GI +++D+VP H
Sbjct: 325 AGIGVIVDWVPAH 337
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 40.3 bits (95), Expect = 3e-04
Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 38 WQTSVFYHLYPRSF----KDSNGDGVGDLKGMIEKLP-EHLHDLGVGAVWISPIF----- 87
W +++ Y + + + + G K + + +L LG+ A+ + P+
Sbjct: 148 WGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASE 207
Query: 88 ----KSPMADF-GYDISDYLSFEPLF-----GDLKDFETLKERLHALGIKILLDFVPNHT 137
+ ++++ GY+ + P + L +F + LH GI+++LD V NH+
Sbjct: 208 PRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHS 267
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
sandwich, transferase; 2.30A {Escherichia coli} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Length = 617
Score = 39.1 bits (92), Expect = 7e-04
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 52 KDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGD 110
+ ++ + + + ++L + +G + + PI + P +GY + + FG
Sbjct: 144 RHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGT 203
Query: 111 LKDFETLKERLHALGIKILLDFVPNH 136
DF + HA G+ ++LD+VP H
Sbjct: 204 RDDFRYFIDAAHAAGLNVILDWVPGH 229
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
2e8z_A* 2e9b_A*
Length = 718
Score = 38.5 bits (90), Expect = 0.001
Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 41/150 (27%)
Query: 34 PLEWWQTSVFYHLYPRSF---KDSNGDGVGDLKGMIEKLP----------EHLHDLGVGA 80
P +V Y + R F ++S G + E ++ +LGV
Sbjct: 208 PFSHPVDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKELGVTH 267
Query: 81 VWISPIFKSPMADF--------------GYDISDYLSFEPLF--------GDLKDFETLK 118
V + P+ DF GY+ + + E + + + +
Sbjct: 268 VELLPVN-----DFAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMI 322
Query: 119 ERLHALGIKILLDFVPNHTSN-QHEWFKKS 147
LH G++++LD V NH ++ F+K+
Sbjct: 323 NTLHQHGLRVILDVVFNHVYKRENSPFEKT 352
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
1.70A {Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 37.7 bits (88), Expect = 0.002
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 67 EKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPL--FGDLKDFETLKERLHA 123
+ + + V + I + A FGY ++++ F G +D + L ++ H+
Sbjct: 205 DNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNF--FAVSSRSGTPEDLKYLVDKAHS 262
Query: 124 LGIKILLDFVPNHTSN 139
LG+++L+D V +H SN
Sbjct: 263 LGLRVLMDVVHSHASN 278
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 35.4 bits (82), Expect = 0.014
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 34/146 (23%)
Query: 25 EDVDVPIQEPLEWWQTSVFYHLYPRSF---KDSNGDGVGDL---KGMIEKLPEHLHDLGV 78
+D+ + + +V Y + R F D + IEKL +L DLGV
Sbjct: 136 QDLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLD-YLKDLGV 194
Query: 79 GAVWISPIF----------KSPMADFGYDISDY------LSF---------EPLFGD--L 111
+ + P+ ++D+ S+Y ++ +P + +
Sbjct: 195 THIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRI 254
Query: 112 KDFETLKERLHALGIKILLDFVPNHT 137
+F+ L +H G+ +LD V NHT
Sbjct: 255 AEFKNLINEIHKRGMGAILDVVYNHT 280
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 35.2 bits (81), Expect = 0.016
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Query: 71 EHLHDLGVGAVWISPIFKSPMADF-------------GYDISDYLSFEPLF---GD---- 110
+ L +LG+ V + P+ +F GYD +Y E + +
Sbjct: 476 DSLKELGITTVQLQPVE-----EFNSIDETQPDTYNWGYDPRNYNVPEGAYATTPEGTAR 530
Query: 111 LKDFETLKERLHALGIKILLDFVPNHT 137
+ + + L + LH I + +D V NHT
Sbjct: 531 ITELKQLIQSLHQQRIGVNMDVVYNHT 557
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 34.1 bits (78), Expect = 0.039
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 34/146 (23%)
Query: 25 EDVDVPIQEPLEWWQTSVFYHLYPRSF---KDSNGDGVGDL---KGMIEKLPEHLHDLGV 78
+D+ + + +V Y + R F D + IEKL +L DLGV
Sbjct: 443 QDLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLD-YLKDLGV 501
Query: 79 GAVWISPIF----------KSPMADFGYDISDY------LSF---------EPLFGD--L 111
+ + P+ ++D+ S+Y ++ +P + +
Sbjct: 502 THIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRI 561
Query: 112 KDFETLKERLHALGIKILLDFVPNHT 137
+F+ L +H G+ +LD V NHT
Sbjct: 562 AEFKNLINEIHKRGMGAILDVVYNHT 587
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 32.2 bits (74), Expect = 0.12
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 27/83 (32%)
Query: 114 FETLKERLHALGIKILLDFVPNHTS-------------------NQHE---WFKKSLANI 151
++ L ++ HA +K+LLD TS N E + +
Sbjct: 148 YQELVQKAHAQEVKVLLD-----TSGDSLRQVLQGPWKPYLIKPNLEELEGLLGQDFSEN 202
Query: 152 PPYKCASLLARLHDLGVGAVWIS 174
P + L + G+ + IS
Sbjct: 203 PLAAVQTALTKPMFAGIEWIVIS 225
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.14
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 27 VDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHD-LGVGAVWISP 85
VD I+ P++W T+ F + F G G G + L D GV +
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDF------GPGGASG-LGVLTHRNKDGTGVRVIVAGT 532
Query: 86 IFKSPMADFGY 96
+ +P D+G+
Sbjct: 533 LDINPDDDYGF 543
Score = 31.2 bits (70), Expect = 0.27
Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 53/166 (31%)
Query: 30 PIQEPLEWWQTSVFYH---LYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPI 86
P+ P +H L ++ DL + + D+ + P+
Sbjct: 422 PVASP---------FHSHLL-----VPASDLINKDLVK--NNVSFNAKDIQI------PV 459
Query: 87 FKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLH---ALGIKI--LLDFVPNHTSNQH 141
+ + D G D+ + + D ++ + K +LDF P S
Sbjct: 460 YDT--FD-GSDLRVLSG--SISERIVD-CIIRLPVKWETTTQFKATHILDFGPGGASG-- 511
Query: 142 EWFKKSLANIPPYKCASLLARLHD-LGVGAVWISPIFKSPMADFGY 186
L R D GV + + +P D+G+
Sbjct: 512 --------------LGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 26.9 bits (59), Expect = 7.2
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 109 GDLKDFETLKERLHALGIK 127
GDL+ +T+ L+ + ++
Sbjct: 1857 GDLRALDTVTNVLNFIKLQ 1875
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics,
joint center structural genomics, JCSG, protein
structure initiative; HET: MSE PG4; 1.70A {Listeria
monocytogenes} SCOP: c.1.15.4
Length = 296
Score = 31.4 bits (71), Expect = 0.20
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 14/60 (23%)
Query: 13 LLGCIHLSVGFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEH 72
+ I L DV E + S+ L P G+G GD G + L EH
Sbjct: 205 RIVSIQLC-------DVHETPYKELREESLHDRLAP-------GEGYGDTVGFAKILKEH 250
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A
{Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Length = 290
Score = 30.9 bits (70), Expect = 0.26
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 91 MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130
+A G+D+ + E LK LG+ ++
Sbjct: 26 IAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMC 65
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory
domain, heter incompatibility, prion- binding protein;
2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Length = 225
Score = 29.7 bits (66), Expect = 0.54
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKD-FETLKERLHALGIKIL 129
H H L ++ +F + +A F Y + F + + + K RL G +
Sbjct: 6 HHHHHLVPRGSNVAGLFNNCVACFEY-VQLGRHFGRDYERCQLRLDIAKARLSRWGEAVK 64
Query: 130 LDFVPNHTSNQHEWFKKSLA 149
++ P S+ LA
Sbjct: 65 INDDPRFHSDAPTDKSVQLA 84
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein,
FMN, membrane, NADP, oxidoreductase, transmembrane; HET:
FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A*
3to0_A*
Length = 259
Score = 29.4 bits (66), Expect = 0.80
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 156 CASLLARLHDLGVGAVWISPIFKSPM 181
C LLA L + G+ V +P+ P
Sbjct: 185 CGLLLAALQNAGLVTVTTTPLNCGPR 210
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant,
potato, mitochondria, DNA binding protein; 1.75A
{Solanum tuberosum} PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A*
3n1j_A* 3n1k_A* 3n1l_A*
Length = 178
Score = 28.6 bits (63), Expect = 1.0
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLA 161
LS EP ++ +L+ G I+L F P+ +++W K+ L + + SL++
Sbjct: 24 LSAEPRLPTFNRLDSGGVKLNRRG-VIMLTFWPSVGERKYDWEKRQLFALSATEVGSLIS 82
Query: 162 RLHDLGVGAVWISPIFKSPMADFGY--DISDYLRIKILLD 199
+G S F P + L IK D
Sbjct: 83 ------MGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNAD 116
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase
family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A*
2y5e_A* 2x4b_A
Length = 884
Score = 29.4 bits (66), Expect = 1.1
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 120 RLHALGIKILLDFVPNHTSNQHEWFKKS 147
L+ +G+++++D V NH + S
Sbjct: 387 ALNRIGLRVVMDVVYNHLDSSGPCGISS 414
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 29.0 bits (66), Expect = 1.2
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 27/81 (33%)
Query: 114 FETLKERLHALGIKILLDFVPNHTS-----------------NQHE---WFKKSLANIPP 153
+ + + G K+++D N+ E F ++ +
Sbjct: 144 YAQIAQITAQTGAKLVVD-----AEKELAESVLPYHPLFIKPNKDELEVMFNTTVNSDA- 197
Query: 154 YKCASLLARLHDLGVGAVWIS 174
L D G +V +S
Sbjct: 198 -DVIKYGRLLVDKGAQSVIVS 217
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 29.4 bits (67), Expect = 1.2
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 27/57 (47%)
Query: 96 YDISDYLSFEPL--------------------FG---DLKDFETLKERLHALGIKIL 129
YD SD L FEP+ +G LK L L A G+ ++
Sbjct: 610 YDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK----LARALEAAGVPVI 662
>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A
{Escherichia coli} PDB: 3bm2_A
Length = 183
Score = 28.4 bits (64), Expect = 1.5
Identities = 5/19 (26%), Positives = 7/19 (36%), Gaps = 1/19 (5%)
Query: 159 LLARLHDLGVGAVWISPIF 177
+A G G +W S
Sbjct: 119 QMA-AVAQGFGGIWRSGAL 136
Score = 26.5 bits (59), Expect = 5.7
Identities = 4/15 (26%), Positives = 5/15 (33%)
Query: 73 LHDLGVGAVWISPIF 87
G G +W S
Sbjct: 122 AVAQGFGGIWRSGAL 136
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare
proteins, binding protein, endocytosis-exocytosis
complex; 3.05A {Mus musculus} PDB: 2pjx_A
Length = 592
Score = 28.7 bits (63), Expect = 1.7
Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 27/183 (14%)
Query: 52 KDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEP--LFG 109
+ L +++K+P + V + + M F +I E G
Sbjct: 317 ATEGKTSLSALTQLMKKMPHFRKQISKQVV-HLNLAEDCMNKFKLNIEKLCKTEQDLALG 375
Query: 110 DLKDFETLKERLHAL----------------GIKILLDFVPNHTSNQHEWFKKSLANIPP 153
+ + +K+ + L + + + + T + N+
Sbjct: 376 TDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLYIFGINGTTEENLDRLIH---NVKI 432
Query: 154 YKCASLLARLHDLGVGAVWIS----PIFKSPMADFGYDISDYL-RIKILLDFVPNHTSNQ 208
+ ++ LGV V S P+ K A+ + +S + IK +++ ++ +
Sbjct: 433 EDDSDMIRNWSHLGVPIVPPSQQAKPLRKDRSAEETFQLSRWTPFIKDIMEDAIDNRLDS 492
Query: 209 HEW 211
EW
Sbjct: 493 KEW 495
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 28.3 bits (64), Expect = 1.8
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 27/81 (33%)
Query: 114 FETLKERLHALGIKILLDFVPNHTS-----------------NQHE---WFKKSLANIPP 153
+ ++ + G + +D TS N HE K +A+I
Sbjct: 144 YRSMTQIAKERGAFVAVD-----TSGEALHEVLAAKPSFIKPNHHELSELVSKPIASIE- 197
Query: 154 YKCASLLARLHDLGVGAVWIS 174
+ RL G+ ++ +S
Sbjct: 198 -DAIPHVQRLIGEGIESILVS 217
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 28.5 bits (64), Expect = 2.0
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 25 EDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGV 78
+ + + + RS + + G GVG + + L ++ G
Sbjct: 224 TSMGADMTD-----VGRMGGASVNRSHRPTGGAGVG--AHVAQVLWDNAVKRGT 270
>2i7h_A Nitroreductase-like family protein; alpha-beta, structural
genomics, PSI-2, protein structure in midwest center for
structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus
cereus}
Length = 189
Score = 27.6 bits (62), Expect = 2.2
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 159 LLARLHDLGVGAVWISPIF 177
L + G+G VW S
Sbjct: 124 QLL-AWERGLGCVWKSGGL 141
Score = 26.1 bits (58), Expect = 8.3
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 73 LHDLGVGAVWISPIF 87
+ G+G VW S
Sbjct: 127 AWERGLGCVWKSGGL 141
>1l3a_A PBF-2, P24: plant transcriptional regulator PBF-2; single strand
DNA binding protein, whirly, transcriptionnal activator,
cyclic C4 symmetry; 2.30A {Solanum tuberosum} SCOP:
d.18.1.2
Length = 227
Score = 27.9 bits (61), Expect = 2.5
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLA 161
L+ EP + ++ +L G ++L F P Q++W +K + ++ + S+++
Sbjct: 51 LTVEPRSPEFSPLDSGAFKLSREG-MVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIIS 109
Query: 162 RLHDLGVGAVWISPIFKSP 180
+G F P
Sbjct: 110 ------LGTKDSCEFFHDP 122
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic
ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria
chlorella virus 1} PDB: 2nv9_A*
Length = 372
Score = 27.9 bits (63), Expect = 3.1
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 139 NQHEWFKKSLANIPPY---KCAS---LLARLHDLGVGA 170
+ + + + P+ KC + LL + D V
Sbjct: 29 DLIDQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVNF 66
>3gfa_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile
630}
Length = 198
Score = 27.4 bits (61), Expect = 3.6
Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 159 LLARLHDLGVGAVWISPIF 177
L +LG+G++WI ++
Sbjct: 137 SLT-AVELGLGSLWICDVY 154
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY
beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei}
SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A*
1njj_A*
Length = 425
Score = 27.6 bits (62), Expect = 3.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 140 QHEWFKKSLANIPPY---KCAS---LLARLHDLGVG 169
+HE +KK L + P+ KC +L L LG G
Sbjct: 51 KHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTG 86
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate
specificity, pectin, GH-A, family 53, plant cell WALL
degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis}
SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A*
2gft_A*
Length = 399
Score = 27.5 bits (60), Expect = 3.7
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 61 DLKGMIEKLPEHLHDLGVGAV----WISPIFKSPMADFGYDISDYLSFEPLFGDLKDFET 116
+ G + + + L + GV V W P ++ + DL+
Sbjct: 45 NESGKKQDIFKTLKEAGVNYVRVRIWNDPYD-----------ANGNGYGGGNNDLEKAIQ 93
Query: 117 LKERLHALGIKILLDF 132
+ +R A G+K+L DF
Sbjct: 94 IGKRATANGMKLLADF 109
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 27.5 bits (62), Expect = 3.9
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 28/83 (33%)
Query: 114 FETLKERLHALGIKILLDFVPNHTS-------------------NQHE---WFKKSLANI 151
+ + ER G+ ++LD S N E + L
Sbjct: 166 YAQIIERCQNKGVPVILD-----CSGATLQTVLENPYKPTVIKPNISELYQLLNQPLDES 220
Query: 152 PPYKCASLLARLHDLGVGAVWIS 174
+++ G+ + +S
Sbjct: 221 LES-LKQAVSQPLFEGIEWIIVS 242
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase,
bacterial cell WALL; 2.50A {Escherichia coli}
Length = 491
Score = 27.5 bits (62), Expect = 4.3
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 55 NGDGVGDLKGMIEKL--PEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFG-DL 111
N + L+ ++ ++ H+H +G+G + I + +A+ GY IS G DL
Sbjct: 2 NTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEV-LANEGYQIS---------GSDL 51
Query: 112 KDFETLKERLHALGIKI 128
++L LG I
Sbjct: 52 APNPVT-QQLMNLGATI 67
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM
domain, pointed domain, SCM domain, STE50 regulator,
transferase; NMR {Saccharomyces cerevisiae} SCOP:
a.60.1.2 PDB: 1x9x_A
Length = 85
Score = 25.7 bits (56), Expect = 4.6
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 33 EPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAV 81
++ + + Y SF N ++K + + + L LGV +
Sbjct: 16 PFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDK---DILIALGVNKI 61
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 27.2 bits (61), Expect = 4.6
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 98 ISDYLSFEPLFGDLKDFETLKERLHALGIK 127
+ D+L FE L+ L A +
Sbjct: 252 LIDFLGDV----SRAHFEGLQRLLKANNVP 277
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc
9343}
Length = 190
Score = 26.9 bits (60), Expect = 4.8
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 159 LLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI 194
LA LG+ + WI+ + + L +
Sbjct: 121 FLA-ATSLGIASCWINQLGTTCDDPEVRAYLTSLGV 155
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 27.1 bits (61), Expect = 5.0
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 98 ISDYLSFEPLFGDLKDFETLKERLHALGIK 127
+ DYL E + F L + L + GI
Sbjct: 224 LGDYLDEE----SREHFAGLCKLLESAGIA 249
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 27.1 bits (61), Expect = 5.3
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 98 ISDYLSFEPLFGDLKDFETLKERLHALGIK 127
I+D+L+ E +E +K L LGI
Sbjct: 223 ITDFLNEE----SKAYYEQVKAYLDDLGIP 248
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural
genomics, PSI, protein STRU initiative; 1.85A
{Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Length = 170
Score = 26.6 bits (58), Expect = 5.6
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 7/72 (9%)
Query: 96 YDISDYLSFEPLFGDLKDFETLKE-RLHALGIKIL---LDFVPNHTSNQHEWFKKSLANI 151
D+ D L P + D E + + +F ++ + W K+ +
Sbjct: 34 VDVGDILRKIPDLAPILDPEAFARVHIAEWEGSVEWFDTEFGRDNV---YAWAKEQAGEV 90
Query: 152 PPYKCASLLARL 163
+ R
Sbjct: 91 SHEMFGDWMHRN 102
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 26.8 bits (60), Expect = 6.3
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 98 ISDYLSFEPLFGDLKDFETLKERLHALGIK 127
+ D+L E + ++ L L +
Sbjct: 225 MLDFLGEE----ARAHLKEVERHLERLSVP 250
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM
CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 533
Score = 26.9 bits (59), Expect = 6.5
Identities = 12/115 (10%), Positives = 33/115 (28%), Gaps = 7/115 (6%)
Query: 113 DFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY-----KCASLLARLHDLG 167
D + L +G + + T + + K+ N+ A ++ + G
Sbjct: 220 DAWEMDRVLEKIGYHVNATLTGDATYEKVQNADKADLNLVQCHRSINYIAEMMETKY--G 277
Query: 168 VGAVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQHEWFKKSLANIPPY 222
+ + + I + + D++ L + + + L
Sbjct: 278 IPWIKCNFIGVDGIVETLRDMAKCFDDPELTKRTEEVIAEEIAAIQDDLDYFKEK 332
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, complex with maltotetraose,
hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP:
b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A*
2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Length = 1083
Score = 26.9 bits (59), Expect = 7.6
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 71 EHLHDLGVGAVWISPIFKSPMADF--------GYDISDYLSFEPLF-------GDLKDFE 115
E L L +P ++ GYD Y E + +K+F
Sbjct: 526 EVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEFR 585
Query: 116 TLKERL-HALGIKILLDFVPNHTSNQHEWFKKS-LANIPPY 154
T+ + + LG+ +++D V NHT+ + S L I P+
Sbjct: 586 TMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPW 626
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 26.7 bits (59), Expect = 7.9
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 3/113 (2%)
Query: 113 DFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY-KCASLLAR-LHD-LGVG 169
+F + L LG+++L + + + ++ N+ K +AR L + G
Sbjct: 217 EFWHVLPLLDELGLRVLCTLAGDARYREVQTMHRAEVNMMVCSKAMLNVARKLQETYGTP 276
Query: 170 AVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQHEWFKKSLANIPPY 222
S + + D + L L + + + +L
Sbjct: 277 WFEGSFYGITDTSQALRDFARLLDDPDLTARTEALIAREEAKVRAALEPWRAR 329
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase,
vitamin B12, dithionite, charge transfer complex,
flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti}
PDB: 2isj_A* 2isl_A*
Length = 230
Score = 26.2 bits (58), Expect = 8.2
Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 159 LLARLHDLGVGAVWIS 174
LA GVG W+S
Sbjct: 156 WLA-ARAEGVGVGWVS 170
>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens
ST structural genomics, PSI-2, protein structure
initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens
str}
Length = 197
Score = 26.0 bits (57), Expect = 8.3
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 156 CASLLARLHDLGVGAVWISPIF 177
C +++ + G A W++
Sbjct: 127 CLNVIFAANASGFAANWLTEWL 148
>3e39_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio
desulfuricans subsp}
Length = 178
Score = 26.0 bits (58), Expect = 8.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 159 LLARLHDLGVGAVWISPIFKSPMA 182
LLA H L +GAVW+ I
Sbjct: 109 LLA-AHALQLGAVWLGEIINQAAT 131
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 26.5 bits (57), Expect = 9.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 101 YLSFEPLFGDLKDFETLKERL 121
+ FE G L TL++R
Sbjct: 547 VIFFESKVGSLNSVRTLEKRF 567
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein
structure initiati northeast structural genomics
consortium, hydrolase; 2.70A {Lactobacillus brevis}
Length = 745
Score = 26.6 bits (58), Expect = 9.6
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALG 125
+ + LG+ + + D + D+ + F D E + +H G
Sbjct: 349 LMTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGDWFVDQRKFPD--GIEHFSQAVHQQG 406
Query: 126 IKILLDFVPNHTSNQHEWFKK 146
+K L F P S + +++
Sbjct: 407 MKFGLWFEPEMVSVDSDLYQQ 427
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.142 0.457
Gapped
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,722,411
Number of extensions: 225486
Number of successful extensions: 1156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 959
Number of HSP's successfully gapped: 177
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)