Query psy8674
Match_columns 439
No_of_seqs 502 out of 4138
Neff 9.6
Searched_HMMs 46136
Date Sat Aug 17 00:51:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3737|consensus 100.0 2.2E-35 4.8E-40 267.1 17.9 243 196-438 81-325 (603)
2 cd02510 pp-GalNAc-T pp-GalNAc- 100.0 1.2E-29 2.5E-34 240.5 18.0 174 12-189 55-228 (299)
3 KOG3738|consensus 100.0 7.1E-30 1.5E-34 232.0 12.0 198 229-434 84-281 (559)
4 KOG3736|consensus 100.0 1.9E-29 4E-34 247.2 13.5 219 212-435 85-304 (578)
5 KOG3737|consensus 100.0 4E-30 8.8E-35 233.1 7.3 193 2-194 202-395 (603)
6 KOG3736|consensus 100.0 7.8E-29 1.7E-33 242.8 9.4 183 2-188 189-371 (578)
7 KOG3738|consensus 99.9 8.8E-28 1.9E-32 218.5 6.1 177 10-190 175-351 (559)
8 cd02510 pp-GalNAc-T pp-GalNAc- 99.9 3.6E-23 7.8E-28 196.1 18.0 155 272-430 1-156 (299)
9 COG1216 Predicted glycosyltran 99.9 1.1E-22 2.4E-27 192.8 13.3 174 7-191 47-225 (305)
10 PRK10073 putative glycosyl tra 99.9 2.3E-21 4.9E-26 185.0 15.3 116 267-388 4-119 (328)
11 TIGR01556 rhamnosyltran L-rham 99.9 4.3E-21 9.4E-26 180.2 12.9 163 5-188 36-203 (281)
12 PF10111 Glyco_tranf_2_2: Glyc 99.9 5.3E-21 1.2E-25 179.0 12.9 166 4-187 50-223 (281)
13 cd02520 Glucosylceramide_synth 99.8 5.8E-20 1.3E-24 163.1 14.3 118 269-390 1-122 (196)
14 cd06427 CESA_like_2 CESA_like_ 99.8 5.4E-20 1.2E-24 168.8 13.7 124 269-394 1-126 (241)
15 PF00535 Glycos_transf_2: Glyc 99.8 5.3E-20 1.2E-24 158.3 12.6 123 272-399 1-123 (169)
16 PRK10018 putative glycosyl tra 99.8 1.5E-19 3.2E-24 167.8 15.1 110 267-382 3-113 (279)
17 cd06437 CESA_CaSu_A2 Cellulose 99.8 1.3E-19 2.9E-24 165.2 14.6 125 269-396 1-129 (232)
18 cd04184 GT2_RfbC_Mx_like Myxoc 99.8 2E-19 4.3E-24 160.3 14.5 123 269-394 1-124 (202)
19 cd04195 GT2_AmsE_like GT2_AmsE 99.8 2.2E-19 4.7E-24 160.0 14.5 123 272-398 1-125 (201)
20 TIGR03111 glyc2_xrt_Gpos1 puta 99.8 2.8E-19 6.2E-24 177.6 16.8 123 266-391 46-169 (439)
21 cd04184 GT2_RfbC_Mx_like Myxoc 99.8 1.9E-19 4.1E-24 160.4 13.3 151 4-184 48-199 (202)
22 cd04196 GT_2_like_d Subfamily 99.8 2.5E-19 5.3E-24 161.1 14.1 120 272-395 1-121 (214)
23 cd06439 CESA_like_1 CESA_like_ 99.8 3.4E-19 7.4E-24 164.5 14.7 127 266-397 26-152 (251)
24 TIGR03469 HonB hopene-associat 99.8 3.3E-19 7.2E-24 174.3 14.8 123 266-391 37-170 (384)
25 cd02526 GT2_RfbF_like RfbF is 99.8 1.7E-19 3.7E-24 165.0 11.9 155 15-190 47-208 (237)
26 PLN02726 dolichyl-phosphate be 99.8 4.3E-19 9.4E-24 163.0 14.1 121 267-391 7-130 (243)
27 PRK11204 N-glycosyltransferase 99.8 6.8E-19 1.5E-23 174.9 15.7 123 266-393 51-174 (420)
28 cd04195 GT2_AmsE_like GT2_AmsE 99.8 2.5E-19 5.3E-24 159.6 11.3 156 2-185 44-200 (201)
29 PF13641 Glyco_tranf_2_3: Glyc 99.8 2.7E-19 5.8E-24 162.7 11.4 169 2-192 44-216 (228)
30 PRK14583 hmsR N-glycosyltransf 99.8 7.5E-19 1.6E-23 175.1 15.5 126 267-397 73-199 (444)
31 cd06435 CESA_NdvC_like NdvC_li 99.8 5.9E-19 1.3E-23 161.3 13.1 165 4-189 45-212 (236)
32 TIGR03472 HpnI hopanoid biosyn 99.8 1E-18 2.2E-23 170.3 15.3 122 267-392 39-164 (373)
33 cd02520 Glucosylceramide_synth 99.8 4.6E-19 9.9E-24 157.3 11.7 135 2-191 44-182 (196)
34 cd06913 beta3GnTL1_like Beta 1 99.8 1.1E-18 2.3E-23 157.8 14.2 119 273-394 1-124 (219)
35 PRK10063 putative glycosyl tra 99.8 1.5E-18 3.3E-23 159.1 15.0 115 269-390 1-118 (248)
36 cd06437 CESA_CaSu_A2 Cellulose 99.8 4.3E-19 9.3E-24 161.9 10.8 170 3-192 46-219 (232)
37 cd06913 beta3GnTL1_like Beta 1 99.8 9.6E-19 2.1E-23 158.1 12.9 168 2-190 41-213 (219)
38 cd06420 GT2_Chondriotin_Pol_N 99.8 1.4E-18 3E-23 152.2 13.5 141 2-187 40-182 (182)
39 cd06421 CESA_CelA_like CESA_Ce 99.8 1.5E-18 3.3E-23 158.3 14.4 122 269-393 1-124 (234)
40 cd04186 GT_2_like_c Subfamily 99.8 1.6E-18 3.5E-23 149.0 13.2 124 8-186 42-165 (166)
41 cd06442 DPM1_like DPM1_like re 99.8 1.3E-18 2.8E-23 157.7 13.1 112 273-389 1-113 (224)
42 cd06435 CESA_NdvC_like NdvC_li 99.8 2.6E-18 5.6E-23 157.1 13.8 117 272-390 1-120 (236)
43 PTZ00260 dolichyl-phosphate be 99.8 2.8E-18 6.2E-23 163.8 14.4 125 266-392 67-203 (333)
44 cd04188 DPG_synthase DPG_synth 99.8 2.1E-18 4.6E-23 154.9 11.8 115 273-391 1-119 (211)
45 PRK10714 undecaprenyl phosphat 99.8 4.6E-18 1E-22 161.9 13.8 118 268-390 5-125 (325)
46 PRK11204 N-glycosyltransferase 99.8 2.5E-18 5.4E-23 170.9 12.1 168 2-191 97-265 (420)
47 cd06433 GT_2_WfgS_like WfgS an 99.8 9.5E-18 2.1E-22 149.0 14.0 118 272-397 1-119 (202)
48 cd04185 GT_2_like_b Subfamily 99.8 6.8E-18 1.5E-22 150.5 13.0 135 3-191 41-178 (202)
49 cd02525 Succinoglycan_BP_ExoA 99.8 6.7E-18 1.5E-22 155.4 12.8 169 2-191 45-213 (249)
50 PRK13915 putative glucosyl-3-p 99.7 9.9E-18 2.2E-22 157.9 12.0 122 267-390 29-153 (306)
51 cd02525 Succinoglycan_BP_ExoA 99.7 1.8E-17 3.9E-22 152.5 13.6 121 270-394 1-121 (249)
52 cd04192 GT_2_like_e Subfamily 99.7 1.6E-17 3.5E-22 150.9 12.9 117 273-392 1-120 (229)
53 cd04179 DPM_DPG-synthase_like 99.7 1.5E-17 3.2E-22 146.0 12.1 115 273-390 1-115 (185)
54 cd04185 GT_2_like_b Subfamily 99.7 1.3E-17 2.9E-22 148.6 12.0 117 273-395 1-120 (202)
55 cd06423 CESA_like CESA_like is 99.7 2.1E-17 4.6E-22 142.9 12.4 121 273-397 1-122 (180)
56 PRK14583 hmsR N-glycosyltransf 99.7 8.3E-18 1.8E-22 167.6 11.1 168 2-191 118-286 (444)
57 cd04192 GT_2_like_e Subfamily 99.7 1.3E-17 2.8E-22 151.5 11.1 156 15-190 55-215 (229)
58 cd06421 CESA_CelA_like CESA_Ce 99.7 1.5E-17 3.2E-22 151.8 11.1 166 3-190 48-215 (234)
59 cd06434 GT2_HAS Hyaluronan syn 99.7 3.1E-17 6.7E-22 149.8 12.9 119 270-396 1-119 (235)
60 cd06436 GlcNAc-1-P_transferase 99.7 3.3E-17 7.1E-22 144.7 12.4 117 273-396 1-131 (191)
61 cd06427 CESA_like_2 CESA_like_ 99.7 7.8E-18 1.7E-22 154.5 8.6 152 16-187 60-213 (241)
62 cd04187 DPM1_like_bac Bacteria 99.7 4.5E-17 9.8E-22 142.5 12.1 113 273-391 1-116 (181)
63 cd06438 EpsO_like EpsO protein 99.7 6.6E-17 1.4E-21 141.8 12.6 109 273-387 1-114 (183)
64 KOG2978|consensus 99.7 9.1E-17 2E-21 132.5 12.0 147 268-434 2-152 (238)
65 cd06420 GT2_Chondriotin_Pol_N 99.7 8.4E-17 1.8E-21 140.8 12.4 114 273-391 1-115 (182)
66 cd06433 GT_2_WfgS_like WfgS an 99.7 1.5E-16 3.3E-21 141.2 13.9 155 8-190 43-198 (202)
67 PF13641 Glyco_tranf_2_3: Glyc 99.7 1.4E-17 2.9E-22 151.5 6.9 125 269-397 1-129 (228)
68 cd06442 DPM1_like DPM1_like re 99.7 6.4E-17 1.4E-21 146.6 11.3 165 2-189 41-206 (224)
69 cd02511 Beta4Glucosyltransfera 99.7 1.5E-16 3.2E-21 144.7 13.3 111 270-394 1-112 (229)
70 cd02522 GT_2_like_a GT_2_like_ 99.7 2.1E-16 4.6E-21 142.8 12.4 111 271-393 1-111 (221)
71 TIGR03111 glyc2_xrt_Gpos1 puta 99.7 7.2E-17 1.6E-21 160.5 10.1 174 2-189 94-270 (439)
72 PRK11498 bcsA cellulose syntha 99.7 3.6E-16 7.7E-21 162.8 14.0 118 266-390 257-376 (852)
73 TIGR03469 HonB hopene-associat 99.7 1.7E-16 3.8E-21 155.2 9.8 165 2-183 84-259 (384)
74 TIGR03030 CelA cellulose synth 99.7 6.6E-16 1.4E-20 161.7 14.5 121 266-388 128-263 (713)
75 PLN02726 dolichyl-phosphate be 99.7 4.3E-16 9.3E-21 143.1 11.6 165 2-187 54-219 (243)
76 cd04186 GT_2_like_c Subfamily 99.7 6.8E-16 1.5E-20 132.6 11.8 109 273-389 1-110 (166)
77 TIGR03472 HpnI hopanoid biosyn 99.7 2.6E-16 5.6E-21 153.5 9.7 167 2-187 84-254 (373)
78 COG1215 Glycosyltransferases, 99.7 1.2E-15 2.7E-20 152.6 14.1 122 268-392 53-175 (439)
79 COG0463 WcaA Glycosyltransfera 99.6 1.5E-15 3.2E-20 136.3 12.0 107 268-380 2-108 (291)
80 cd02522 GT_2_like_a GT_2_like_ 99.6 2.6E-15 5.7E-20 135.6 12.3 136 16-185 50-185 (221)
81 COG1216 Predicted glycosyltran 99.6 3E-15 6.6E-20 142.0 12.8 121 268-395 2-126 (305)
82 PRK10018 putative glycosyl tra 99.6 5.5E-15 1.2E-19 137.3 14.1 160 4-189 48-210 (279)
83 PRK11498 bcsA cellulose syntha 99.6 1.9E-15 4.1E-20 157.5 11.9 165 3-186 303-469 (852)
84 cd04196 GT_2_like_d Subfamily 99.6 5.6E-15 1.2E-19 132.6 13.1 166 2-190 41-207 (214)
85 cd02526 GT2_RfbF_like RfbF is 99.6 5.3E-15 1.2E-19 135.2 12.2 110 273-392 1-117 (237)
86 cd06434 GT2_HAS Hyaluronan syn 99.6 6.5E-16 1.4E-20 141.0 6.0 157 15-190 53-217 (235)
87 cd06439 CESA_like_1 CESA_like_ 99.6 1.9E-15 4.2E-20 139.4 8.3 160 3-191 75-234 (251)
88 TIGR03030 CelA cellulose synth 99.6 1.1E-14 2.4E-19 152.5 12.6 168 4-190 193-362 (713)
89 cd04179 DPM_DPG-synthase_like 99.5 1.1E-14 2.4E-19 127.7 7.4 142 2-168 42-185 (185)
90 PRK10073 putative glycosyl tra 99.5 1.8E-14 3.9E-19 137.6 9.2 169 2-189 49-219 (328)
91 PRK10063 putative glycosyl tra 99.5 1.5E-13 3.1E-18 126.2 14.8 149 3-186 48-196 (248)
92 cd04190 Chitin_synth_C C-termi 99.5 2.2E-14 4.7E-19 131.7 9.4 100 273-396 1-116 (244)
93 TIGR01556 rhamnosyltran L-rham 99.5 3.8E-14 8.1E-19 133.1 11.0 106 276-391 1-112 (281)
94 cd04188 DPG_synthase DPG_synth 99.5 3.5E-14 7.6E-19 127.5 10.2 158 2-179 44-201 (211)
95 PF10111 Glyco_tranf_2_2: Glyc 99.5 2E-13 4.4E-18 127.8 13.0 116 272-391 1-129 (281)
96 cd04191 Glucan_BSP_ModH Glucan 99.5 4.3E-13 9.3E-18 123.0 14.2 126 271-398 1-140 (254)
97 PRK14716 bacteriophage N4 adso 99.5 5E-13 1.1E-17 132.9 14.6 110 267-381 64-185 (504)
98 COG1215 Glycosyltransferases, 99.5 5.4E-13 1.2E-17 133.5 13.0 165 2-184 98-263 (439)
99 cd04187 DPM1_like_bac Bacteria 99.4 3.1E-13 6.6E-18 118.2 9.4 138 2-167 43-180 (181)
100 PF13712 Glyco_tranf_2_5: Glyc 99.4 3.4E-13 7.4E-18 120.5 9.7 173 6-190 16-201 (217)
101 PF00535 Glycos_transf_2: Glyc 99.4 4E-13 8.7E-18 115.2 9.1 129 2-148 41-169 (169)
102 KOG2977|consensus 99.4 2.1E-12 4.5E-17 114.1 13.0 125 269-394 67-202 (323)
103 cd06423 CESA_like CESA_like is 99.4 2.3E-13 4.9E-18 117.5 7.0 140 2-161 40-180 (180)
104 cd04190 Chitin_synth_C C-termi 99.4 7.6E-13 1.6E-17 121.5 9.5 172 3-191 14-227 (244)
105 PF13632 Glyco_trans_2_3: Glyc 99.4 1.3E-12 2.7E-17 115.6 8.9 128 43-190 1-128 (193)
106 PRK11234 nfrB bacteriophage N4 99.4 4.6E-12 1E-16 131.3 14.3 118 266-389 60-189 (727)
107 cd04191 Glucan_BSP_ModH Glucan 99.4 3.8E-12 8.2E-17 116.8 11.1 160 7-183 57-228 (254)
108 cd00761 Glyco_tranf_GTA_type G 99.4 1.2E-11 2.6E-16 104.0 13.1 112 273-389 1-113 (156)
109 PRK05454 glucosyltransferase M 99.3 2.6E-11 5.6E-16 125.1 16.2 132 266-398 121-265 (691)
110 PF13506 Glyco_transf_21: Glyc 99.3 5.8E-12 1.3E-16 108.8 6.9 143 18-183 5-151 (175)
111 PF02709 Glyco_transf_7C: N-te 99.2 1.1E-11 2.4E-16 91.0 5.3 58 130-187 17-75 (78)
112 cd00899 b4GalT Beta-4-Galactos 99.2 7.5E-11 1.6E-15 103.4 11.5 137 6-189 24-170 (219)
113 PRK14716 bacteriophage N4 adso 99.2 4.7E-11 1E-15 118.9 11.3 160 2-184 110-287 (504)
114 cd06438 EpsO_like EpsO protein 99.2 1.8E-11 3.9E-16 107.2 5.5 137 6-164 42-183 (183)
115 PRK15489 nfrB bacteriophage N4 99.2 2.6E-10 5.6E-15 117.0 14.0 120 267-392 69-200 (703)
116 cd00761 Glyco_tranf_GTA_type G 99.1 6.2E-10 1.3E-14 93.4 11.4 101 16-175 53-154 (156)
117 cd06436 GlcNAc-1-P_transferase 99.1 4.4E-10 9.6E-15 99.1 7.7 63 15-77 50-126 (191)
118 PTZ00260 dolichyl-phosphate be 99.0 2.6E-09 5.5E-14 102.3 12.6 159 2-181 121-287 (333)
119 cd02514 GT13_GLCNAC-TI GT13_GL 99.0 4.8E-09 1E-13 98.7 12.5 113 271-391 2-137 (334)
120 PRK11234 nfrB bacteriophage N4 99.0 3.9E-09 8.4E-14 109.8 11.6 157 2-181 107-281 (727)
121 PRK05454 glucosyltransferase M 98.9 5.9E-09 1.3E-13 107.8 10.8 159 6-182 181-352 (691)
122 PRK15489 nfrB bacteriophage N4 98.8 2.6E-08 5.5E-13 102.5 9.6 153 1-177 114-285 (703)
123 PRK13915 putative glucosyl-3-p 98.8 1.6E-08 3.4E-13 95.5 7.1 138 22-179 97-238 (306)
124 PRK10714 undecaprenyl phosphat 98.7 6.4E-08 1.4E-12 92.4 10.8 73 2-75 52-124 (325)
125 KOG3588|consensus 98.7 7.4E-08 1.6E-12 88.4 9.1 167 5-194 278-445 (494)
126 KOG2547|consensus 98.6 5.6E-07 1.2E-11 83.1 13.1 118 267-388 83-204 (431)
127 COG4092 Predicted glycosyltran 98.5 5.6E-07 1.2E-11 79.2 9.6 152 4-171 52-216 (346)
128 KOG2978|consensus 98.5 1.2E-06 2.6E-11 73.2 10.5 159 3-184 50-211 (238)
129 PF05679 CHGN: Chondroitin N-a 98.5 2.4E-06 5.3E-11 86.0 14.1 168 3-194 301-475 (499)
130 cd02511 Beta4Glucosyltransfera 98.3 1.4E-06 2.9E-11 79.2 7.0 62 6-70 40-101 (229)
131 PF13712 Glyco_tranf_2_5: Glyc 98.2 3.4E-06 7.3E-11 75.5 7.7 91 271-391 1-92 (217)
132 PF11397 GlcNAc: Glycosyltrans 98.2 8.8E-06 1.9E-10 77.3 10.3 172 15-193 88-269 (343)
133 KOG3916|consensus 98.0 1.2E-05 2.7E-10 73.6 6.4 127 6-179 173-307 (372)
134 PF13704 Glyco_tranf_2_4: Glyc 97.9 9.9E-05 2.1E-09 57.0 8.9 82 278-370 1-87 (97)
135 PF03142 Chitin_synth_2: Chiti 97.9 0.00025 5.3E-09 71.0 13.1 123 269-391 25-239 (527)
136 PLN02893 Cellulose synthase-li 97.8 0.00016 3.4E-09 74.5 10.8 53 15-67 264-326 (734)
137 PF03452 Anp1: Anp1; InterPro 97.7 0.00085 1.8E-08 61.0 13.3 120 266-391 22-176 (269)
138 cd02514 GT13_GLCNAC-TI GT13_GL 97.6 0.00021 4.6E-09 67.6 8.6 118 31-187 88-210 (334)
139 PF13506 Glyco_transf_21: Glyc 97.4 0.0003 6.6E-09 60.7 6.3 66 333-398 6-75 (175)
140 PF06306 CgtA: Beta-1,4-N-acet 97.4 0.0017 3.6E-08 59.5 11.1 144 270-420 88-241 (347)
141 PF03071 GNT-I: GNT-I family; 97.4 0.0015 3.4E-08 63.4 11.6 118 267-390 91-230 (434)
142 COG4092 Predicted glycosyltran 97.2 0.0026 5.6E-08 56.6 9.0 107 268-378 1-118 (346)
143 PF13896 Glyco_transf_49: Glyc 97.1 0.0024 5.3E-08 60.6 9.4 160 25-192 112-288 (317)
144 COG0463 WcaA Glycosyltransfera 97.1 0.0013 2.7E-08 58.1 6.8 62 2-65 46-107 (291)
145 KOG2547|consensus 97.0 0.0019 4.1E-08 60.3 6.7 152 4-175 130-286 (431)
146 COG2943 MdoH Membrane glycosyl 97.0 0.0088 1.9E-07 58.5 11.1 128 269-398 144-285 (736)
147 PF03142 Chitin_synth_2: Chiti 96.9 0.0013 2.8E-08 66.0 5.3 135 35-186 196-355 (527)
148 PF09488 Osmo_MPGsynth: Mannos 96.8 0.014 3E-07 54.6 11.0 94 269-368 50-173 (381)
149 PF11316 Rhamno_transf: Putati 96.5 0.018 3.9E-07 51.9 9.5 90 287-380 46-140 (234)
150 KOG3917|consensus 96.3 0.006 1.3E-07 52.8 4.7 47 131-177 180-226 (310)
151 TIGR02460 osmo_MPGsynth mannos 96.2 0.052 1.1E-06 50.6 10.4 105 269-380 50-184 (381)
152 PRK14503 mannosyl-3-phosphogly 96.2 0.052 1.1E-06 50.9 10.3 105 269-380 51-185 (393)
153 PF05679 CHGN: Chondroitin N-a 96.0 0.071 1.5E-06 54.1 11.7 124 266-391 244-377 (499)
154 KOG2977|consensus 95.5 0.034 7.4E-07 50.3 6.0 65 2-66 118-183 (323)
155 PF11735 CAP59_mtransfer: Cryp 95.4 0.27 5.8E-06 44.5 11.6 114 272-389 3-146 (241)
156 PF09258 Glyco_transf_64: Glyc 95.4 0.045 9.8E-07 50.0 6.6 122 271-402 1-127 (247)
157 PF12804 NTP_transf_3: MobA-li 95.0 0.1 2.3E-06 44.0 7.5 102 275-391 19-123 (160)
158 cd00218 GlcAT-I Beta1,3-glucur 94.7 0.24 5.2E-06 43.9 9.0 100 269-376 1-117 (223)
159 PRK14502 bifunctional mannosyl 94.6 0.29 6.3E-06 50.7 10.5 105 269-380 55-189 (694)
160 KOG1476|consensus 94.5 0.34 7.4E-06 44.7 9.7 104 268-380 86-206 (330)
161 cd04182 GT_2_like_f GT_2_like_ 94.5 0.36 7.9E-06 41.6 9.9 102 279-392 24-129 (186)
162 KOG2571|consensus 94.5 0.032 6.9E-07 58.6 3.5 135 33-186 431-578 (862)
163 TIGR03310 matur_ygfJ molybdenu 94.4 0.37 7.9E-06 41.8 9.7 100 283-392 26-128 (188)
164 PF03214 RGP: Reversibly glyco 94.4 0.11 2.3E-06 48.4 6.2 112 270-389 9-126 (348)
165 KOG3588|consensus 94.3 0.5 1.1E-05 44.5 10.4 108 266-377 226-336 (494)
166 COG1209 RfbA dTDP-glucose pyro 93.9 1.1 2.4E-05 40.8 11.6 103 274-384 25-127 (286)
167 PF03452 Anp1: Anp1; InterPro 93.9 0.08 1.7E-06 48.4 4.4 47 28-78 127-177 (269)
168 cd02540 GT2_GlmU_N_bac N-termi 93.8 0.7 1.5E-05 41.5 10.6 100 274-386 20-122 (229)
169 PLN02458 transferase, transfer 93.7 0.43 9.4E-06 44.4 8.7 102 268-376 111-224 (346)
170 COG1213 Predicted sugar nucleo 93.6 0.14 3.1E-06 45.4 5.3 88 283-379 32-121 (239)
171 PRK15480 glucose-1-phosphate t 93.4 1.5 3.3E-05 41.2 12.2 98 274-382 28-129 (292)
172 PF01762 Galactosyl_T: Galacto 93.1 0.64 1.4E-05 40.8 8.8 146 4-175 39-191 (195)
173 PLN02195 cellulose synthase A 93.1 0.26 5.7E-06 52.6 7.1 53 15-67 419-481 (977)
174 PRK00317 mobA molybdopterin-gu 93.1 0.52 1.1E-05 41.2 8.2 93 279-388 28-123 (193)
175 cd04181 NTP_transferase NTP_tr 93.0 2 4.4E-05 38.0 12.1 101 275-384 24-124 (217)
176 cd06915 NTP_transferase_WcbM_l 92.9 2.2 4.8E-05 37.9 12.3 99 274-384 23-124 (223)
177 TIGR03202 pucB xanthine dehydr 92.8 1.3 2.8E-05 38.6 10.4 105 279-391 24-133 (190)
178 PF00483 NTP_transferase: Nucl 92.4 0.6 1.3E-05 42.5 8.1 101 274-384 24-131 (248)
179 cd06425 M1P_guanylylT_B_like_N 92.4 1.6 3.4E-05 39.5 10.6 103 274-384 25-129 (233)
180 PF12804 NTP_transf_3: MobA-li 92.4 0.46 1E-05 40.0 6.8 68 6-75 51-121 (160)
181 TIGR01207 rmlA glucose-1-phosp 92.3 2 4.4E-05 40.2 11.5 99 274-382 24-125 (286)
182 PLN02189 cellulose synthase 92.1 1.2 2.7E-05 48.1 10.7 93 283-382 439-561 (1040)
183 cd02503 MobA MobA catalyzes th 92.0 1.1 2.4E-05 38.6 8.8 94 279-390 24-119 (181)
184 PLN02893 Cellulose synthase-li 91.9 0.46 9.9E-06 49.7 7.0 55 327-382 263-327 (734)
185 PF13632 Glyco_trans_2_3: Glyc 91.3 0.23 4.9E-06 43.3 3.8 39 357-395 1-39 (193)
186 PLN02189 cellulose synthase 91.2 0.56 1.2E-05 50.6 7.0 53 15-67 498-560 (1040)
187 PF13733 Glyco_transf_7N: N-te 91.2 0.79 1.7E-05 37.1 6.3 72 270-370 48-127 (136)
188 cd06431 GT8_LARGE_C LARGE cata 91.2 4 8.6E-05 38.1 12.0 105 270-379 2-121 (280)
189 cd06422 NTP_transferase_like_1 91.0 4 8.7E-05 36.3 11.7 97 274-380 24-121 (221)
190 PF01697 Glyco_transf_92: Glyc 90.9 2.2 4.7E-05 39.8 10.2 107 271-384 3-137 (285)
191 PRK13368 3-deoxy-manno-octulos 90.7 4.3 9.3E-05 36.7 11.8 88 283-383 28-118 (238)
192 COG1211 IspD 4-diphosphocytidy 90.6 4.4 9.5E-05 36.4 11.2 104 283-394 33-141 (230)
193 PF04666 Glyco_transf_54: N-Ac 90.6 4.7 0.0001 37.8 11.8 114 269-384 52-199 (297)
194 cd06428 M1P_guanylylT_A_like_N 90.4 4.3 9.4E-05 37.2 11.6 104 274-384 25-131 (257)
195 PLN02917 CMP-KDO synthetase 90.1 4 8.7E-05 38.4 11.1 92 283-387 73-169 (293)
196 PF11397 GlcNAc: Glycosyltrans 89.9 3.4 7.4E-05 39.6 10.5 116 271-388 2-152 (343)
197 TIGR03552 F420_cofC 2-phospho- 89.8 2.9 6.3E-05 36.5 9.5 96 283-393 31-129 (195)
198 cd04189 G1P_TT_long G1P_TT_lon 89.8 10 0.00022 34.0 13.5 101 274-383 25-125 (236)
199 cd06915 NTP_transferase_WcbM_l 89.8 13 0.00029 32.7 14.6 68 4-72 56-126 (223)
200 cd02538 G1P_TT_short G1P_TT_sh 89.8 4.8 0.0001 36.4 11.3 98 274-381 25-125 (240)
201 KOG1413|consensus 89.7 1.8 3.9E-05 40.7 8.1 117 266-388 64-204 (411)
202 COG1208 GCD1 Nucleoside-diphos 89.6 15 0.00032 35.7 15.0 68 2-70 57-127 (358)
203 PLN02638 cellulose synthase A 89.5 1 2.2E-05 48.8 7.2 53 15-67 516-578 (1079)
204 cd00899 b4GalT Beta-4-Galactos 89.4 1.1 2.3E-05 39.9 6.2 76 270-373 3-85 (219)
205 PLN02248 cellulose synthase-li 89.3 0.88 1.9E-05 49.4 6.6 53 15-67 585-647 (1135)
206 PRK13385 2-C-methyl-D-erythrit 89.1 3.3 7.2E-05 37.3 9.6 103 280-392 29-137 (230)
207 cd02509 GDP-M1P_Guanylyltransf 89.0 6.4 0.00014 36.6 11.5 87 274-368 26-116 (274)
208 cd02518 GT2_SpsF SpsF is a gly 88.8 4 8.7E-05 36.8 9.9 100 279-388 22-122 (233)
209 PRK00155 ispD 2-C-methyl-D-ery 88.6 6.2 0.00014 35.3 11.0 99 283-390 32-133 (227)
210 cd04182 GT_2_like_f GT_2_like_ 88.5 1.7 3.7E-05 37.4 7.0 59 17-75 64-126 (186)
211 PRK14353 glmU bifunctional N-a 88.5 5.6 0.00012 39.9 11.7 100 274-384 27-129 (446)
212 PLN03180 reversibly glycosylat 88.5 1.4 3E-05 41.4 6.4 89 268-371 10-110 (346)
213 cd00505 Glyco_transf_8 Members 88.4 9 0.0002 34.9 12.0 113 273-389 3-129 (246)
214 COG2068 Uncharacterized MobA-r 88.3 8.4 0.00018 33.6 10.8 104 283-397 32-139 (199)
215 PRK09382 ispDF bifunctional 2- 88.3 6.4 0.00014 38.5 11.4 91 283-383 34-125 (378)
216 PLN02917 CMP-KDO synthetase 87.5 13 0.00028 34.9 12.6 163 4-179 98-266 (293)
217 cd04198 eIF-2B_gamma_N The N-t 87.5 8.4 0.00018 34.2 11.0 103 274-388 25-133 (214)
218 PLN02190 cellulose synthase-li 87.4 2.4 5.3E-05 44.4 8.1 54 15-68 252-315 (756)
219 PRK05450 3-deoxy-manno-octulos 87.1 10 0.00022 34.3 11.6 68 4-73 52-124 (245)
220 cd02517 CMP-KDO-Synthetase CMP 86.8 9.3 0.0002 34.5 11.1 93 275-382 21-118 (239)
221 PRK05450 3-deoxy-manno-octulos 86.5 9.6 0.00021 34.5 11.0 94 275-384 22-121 (245)
222 cd06426 NTP_transferase_like_2 86.3 11 0.00025 33.3 11.2 98 274-384 23-123 (220)
223 PLN03153 hypothetical protein; 86.2 2.9 6.3E-05 41.8 7.6 48 131-179 261-313 (537)
224 PRK02726 molybdopterin-guanine 86.1 4.6 0.0001 35.5 8.4 88 279-381 31-120 (200)
225 COG1208 GCD1 Nucleoside-diphos 86.0 13 0.00027 36.2 12.0 98 274-383 26-126 (358)
226 PF03214 RGP: Reversibly glyco 85.9 0.58 1.2E-05 43.7 2.5 47 29-75 80-126 (348)
227 TIGR03310 matur_ygfJ molybdenu 85.6 2.5 5.4E-05 36.5 6.4 59 16-74 63-124 (188)
228 cd02513 CMP-NeuAc_Synthase CMP 85.3 9 0.00019 34.0 10.1 98 283-390 27-134 (223)
229 PRK14352 glmU bifunctional N-a 85.2 13 0.00029 37.6 12.3 101 274-385 26-130 (482)
230 PF00483 NTP_transferase: Nucl 85.2 13 0.00028 33.7 11.2 67 3-70 58-131 (248)
231 TIGR02665 molyb_mobA molybdopt 85.1 6.5 0.00014 33.8 8.8 92 283-388 28-122 (186)
232 KOG3916|consensus 85.1 6.2 0.00013 37.1 8.7 73 269-369 151-230 (372)
233 COG2943 MdoH Membrane glycosyl 85.0 1.6 3.6E-05 43.3 5.2 150 15-182 212-372 (736)
234 cd02540 GT2_GlmU_N_bac N-termi 85.0 3.3 7.2E-05 37.0 7.1 68 4-73 53-123 (229)
235 cd02516 CDP-ME_synthetase CDP- 84.9 9.8 0.00021 33.7 10.1 107 274-391 22-134 (218)
236 PRK14355 glmU bifunctional N-a 84.5 12 0.00026 37.6 11.6 99 274-384 25-126 (459)
237 PLN02190 cellulose synthase-li 84.4 2.7 5.9E-05 44.0 6.8 55 267-321 91-148 (756)
238 TIGR03584 PseF pseudaminic aci 84.4 9.4 0.0002 34.2 9.7 101 279-390 22-131 (222)
239 cd04183 GT2_BcE_like GT2_BcbE_ 83.7 30 0.00064 30.9 12.8 97 274-378 23-121 (231)
240 PF02434 Fringe: Fringe-like; 83.7 3.7 8E-05 37.7 6.8 117 40-190 86-211 (252)
241 cd04194 GT8_A4GalT_like A4GalT 83.6 17 0.00037 33.0 11.3 103 273-378 3-118 (248)
242 PRK14360 glmU bifunctional N-a 83.1 14 0.0003 37.0 11.4 99 274-384 23-124 (450)
243 cd02517 CMP-KDO-Synthetase CMP 83.1 28 0.00061 31.3 12.4 62 4-68 52-118 (239)
244 TIGR01173 glmU UDP-N-acetylglu 83.1 7.3 0.00016 39.0 9.4 97 274-383 22-120 (451)
245 PF13896 Glyco_transf_49: Glyc 83.0 2.9 6.3E-05 39.8 6.0 58 339-396 112-173 (317)
246 cd02508 ADP_Glucose_PP ADP-glu 82.9 16 0.00035 31.9 10.5 103 274-386 23-141 (200)
247 TIGR00466 kdsB 3-deoxy-D-manno 82.9 27 0.00058 31.7 12.1 159 5-179 50-222 (238)
248 cd02503 MobA MobA catalyzes th 82.9 2.5 5.4E-05 36.4 5.1 50 16-65 58-109 (181)
249 TIGR00453 ispD 2-C-methyl-D-er 82.7 11 0.00024 33.4 9.5 104 279-393 25-131 (217)
250 KOG1022|consensus 82.4 2.9 6.3E-05 41.5 5.7 114 266-388 440-553 (691)
251 TIGR00454 conserved hypothetic 81.7 18 0.00039 31.3 10.1 95 275-383 22-118 (183)
252 PF03552 Cellulose_synt: Cellu 81.5 4.2 9.2E-05 42.5 6.8 54 15-68 166-229 (720)
253 PLN02638 cellulose synthase A 81.3 4.2 9.1E-05 44.4 6.9 94 283-383 457-580 (1079)
254 PRK15171 lipopolysaccharide 1, 81.2 40 0.00086 32.4 13.1 107 269-378 24-143 (334)
255 cd02541 UGPase_prokaryotic Pro 81.0 18 0.0004 33.2 10.6 104 274-384 25-150 (267)
256 TIGR01105 galF UTP-glucose-1-p 80.9 31 0.00067 32.5 12.1 103 274-383 28-158 (297)
257 cd02523 PC_cytidylyltransferas 80.7 8.9 0.00019 34.3 8.2 90 274-376 23-114 (229)
258 PLN02728 2-C-methyl-D-erythrit 80.3 12 0.00026 34.3 8.9 103 283-394 53-159 (252)
259 PRK14357 glmU bifunctional N-a 79.9 24 0.00051 35.4 11.7 97 274-385 22-120 (448)
260 PLN02436 cellulose synthase A 79.8 4.3 9.3E-05 44.2 6.4 53 15-67 532-594 (1094)
261 COG2068 Uncharacterized MobA-r 79.6 11 0.00024 32.9 7.7 53 16-68 69-125 (199)
262 COG1213 Predicted sugar nucleo 79.6 1.7 3.7E-05 38.7 2.9 62 3-65 58-121 (239)
263 COG0746 MobA Molybdopterin-gua 79.0 12 0.00027 32.6 8.1 94 278-388 26-121 (192)
264 PRK14358 glmU bifunctional N-a 78.9 19 0.00042 36.5 10.7 99 274-385 29-130 (481)
265 cd02524 G1P_cytidylyltransfera 78.7 31 0.00068 31.4 11.3 102 274-384 23-146 (253)
266 cd04181 NTP_transferase NTP_tr 78.3 12 0.00027 32.9 8.2 68 4-72 56-126 (217)
267 TIGR00466 kdsB 3-deoxy-D-manno 78.2 43 0.00093 30.3 11.8 94 275-384 19-118 (238)
268 PRK14356 glmU bifunctional N-a 78.0 16 0.00034 36.7 9.8 93 275-380 28-124 (456)
269 TIGR01208 rmlA_long glucose-1- 77.9 43 0.00093 32.3 12.5 98 275-383 25-125 (353)
270 TIGR01099 galU UTP-glucose-1-p 77.8 35 0.00075 31.2 11.3 104 274-384 25-150 (260)
271 PF13704 Glyco_tranf_2_4: Glyc 77.3 6 0.00013 29.9 5.1 52 4-56 31-87 (97)
272 cd06432 GT8_HUGT1_C_like The C 77.0 50 0.0011 30.2 11.8 91 283-378 14-118 (248)
273 PRK00317 mobA molybdopterin-gu 76.3 5.4 0.00012 34.7 5.2 57 17-73 63-122 (193)
274 TIGR02665 molyb_mobA molybdopt 76.1 5.5 0.00012 34.3 5.2 57 16-72 61-120 (186)
275 PLN02400 cellulose synthase 75.6 6.5 0.00014 43.0 6.3 53 15-67 523-585 (1085)
276 PF05060 MGAT2: N-acetylglucos 75.5 38 0.00082 32.6 10.7 44 268-313 30-73 (356)
277 PF01501 Glyco_transf_8: Glyco 75.5 14 0.0003 33.3 7.9 105 283-389 12-132 (250)
278 cd06430 GT8_like_2 GT8_like_2 74.8 52 0.0011 31.0 11.4 105 271-380 3-121 (304)
279 PRK14489 putative bifunctional 74.4 16 0.00034 35.6 8.3 96 279-389 30-128 (366)
280 PF02348 CTP_transf_3: Cytidyl 74.2 45 0.00098 29.3 10.8 91 283-384 25-119 (217)
281 PRK14354 glmU bifunctional N-a 74.0 43 0.00093 33.6 11.7 96 274-383 24-122 (458)
282 cd02518 GT2_SpsF SpsF is a gly 73.4 9.8 0.00021 34.2 6.3 67 4-73 54-121 (233)
283 KOG4179|consensus 72.7 8.1 0.00018 37.3 5.5 109 269-379 3-135 (568)
284 KOG2733|consensus 72.6 35 0.00075 32.7 9.5 116 268-398 31-153 (423)
285 PRK00576 molybdopterin-guanine 72.5 22 0.00048 30.4 8.0 90 283-389 16-110 (178)
286 cd06425 M1P_guanylylT_B_like_N 72.4 42 0.00092 30.0 10.2 69 4-73 58-132 (233)
287 PLN02195 cellulose synthase A 72.2 5.3 0.00011 43.2 4.7 42 342-383 437-483 (977)
288 PF01762 Galactosyl_T: Galacto 71.6 17 0.00036 31.8 7.1 76 303-379 22-105 (195)
289 PF03071 GNT-I: GNT-I family; 71.0 22 0.00048 35.2 8.3 108 40-187 191-305 (434)
290 PRK02726 molybdopterin-guanine 71.0 12 0.00027 32.8 6.2 52 16-67 67-120 (200)
291 PF01128 IspD: 2-C-methyl-D-er 70.9 39 0.00084 30.3 9.3 100 283-393 29-133 (221)
292 PLN03180 reversibly glycosylat 70.7 1.9 4.2E-05 40.4 1.0 29 29-57 82-110 (346)
293 PRK10122 GalU regulator GalF; 69.7 85 0.0018 29.5 11.9 103 274-384 28-159 (297)
294 PF11735 CAP59_mtransfer: Cryp 68.8 35 0.00076 31.0 8.6 133 29-172 92-241 (241)
295 TIGR03202 pucB xanthine dehydr 68.5 17 0.00038 31.3 6.6 58 16-73 67-129 (190)
296 PRK14355 glmU bifunctional N-a 68.0 14 0.00031 37.1 6.7 67 4-71 58-127 (459)
297 cd06422 NTP_transferase_like_1 68.0 29 0.00062 30.8 8.0 62 4-66 57-121 (221)
298 TIGR03584 PseF pseudaminic aci 67.3 69 0.0015 28.6 10.3 72 5-76 51-131 (222)
299 PLN02915 cellulose synthase A 67.0 10 0.00022 41.4 5.5 52 15-66 454-515 (1044)
300 cd02523 PC_cytidylyltransferas 66.4 12 0.00025 33.5 5.2 57 4-62 56-114 (229)
301 PRK14360 glmU bifunctional N-a 66.0 16 0.00036 36.5 6.7 68 4-72 56-126 (450)
302 KOG2264|consensus 65.9 7.1 0.00015 39.1 3.7 110 269-388 649-758 (907)
303 cd06428 M1P_guanylylT_A_like_N 65.8 75 0.0016 28.9 10.5 69 4-73 59-134 (257)
304 PRK09451 glmU bifunctional N-a 65.6 37 0.0008 34.1 9.1 96 274-382 27-124 (456)
305 PRK13368 3-deoxy-manno-octulos 65.2 21 0.00045 32.1 6.7 63 4-69 53-118 (238)
306 PF03360 Glyco_transf_43: Glyc 64.7 17 0.00036 32.1 5.5 69 303-374 12-97 (207)
307 TIGR02623 G1P_cyt_trans glucos 64.6 1.1E+02 0.0025 27.8 12.3 102 274-384 24-146 (254)
308 cd02513 CMP-NeuAc_Synthase CMP 64.5 79 0.0017 27.8 10.2 50 27-76 79-134 (223)
309 PF11316 Rhamno_transf: Putati 63.6 19 0.00042 32.5 5.9 62 3-66 74-140 (234)
310 TIGR03552 F420_cofC 2-phospho- 63.0 21 0.00045 31.0 6.0 66 6-75 57-125 (195)
311 KOG2287|consensus 61.6 91 0.002 30.1 10.5 146 4-176 146-299 (349)
312 COG1210 GalU UDP-glucose pyrop 61.6 39 0.00085 31.1 7.3 59 15-73 97-157 (291)
313 PLN03193 beta-1,3-galactosyltr 61.2 1.5E+02 0.0032 29.2 11.6 149 3-178 195-348 (408)
314 PF11051 Mannosyl_trans3: Mann 60.3 76 0.0017 29.4 9.5 94 272-370 3-106 (271)
315 TIGR01479 GMP_PMI mannose-1-ph 59.3 58 0.0013 32.9 9.1 95 275-378 27-128 (468)
316 PRK14353 glmU bifunctional N-a 59.3 24 0.00052 35.3 6.4 64 4-67 60-126 (446)
317 PF09837 DUF2064: Uncharacteri 58.5 48 0.001 26.5 6.8 81 303-390 12-95 (122)
318 COG0746 MobA Molybdopterin-gua 58.1 18 0.00038 31.7 4.5 56 17-72 62-119 (192)
319 PLN03133 beta-1,3-galactosyltr 57.7 1.6E+02 0.0035 30.9 11.9 137 4-170 435-581 (636)
320 PRK13389 UTP--glucose-1-phosph 57.2 1.7E+02 0.0037 27.5 11.8 103 274-383 33-163 (302)
321 COG1212 KdsB CMP-2-keto-3-deox 56.9 1E+02 0.0022 27.6 8.9 112 269-391 2-129 (247)
322 PLN02248 cellulose synthase-li 56.6 17 0.00036 40.1 4.8 40 342-381 603-647 (1135)
323 TIGR02091 glgC glucose-1-phosp 56.5 67 0.0014 31.0 8.8 101 274-384 23-139 (361)
324 PRK14490 putative bifunctional 56.3 73 0.0016 31.0 9.0 85 279-379 198-284 (369)
325 COG0836 {ManC} Mannose-1-phosp 56.3 1.5E+02 0.0032 28.1 10.3 100 255-369 14-120 (333)
326 PRK14352 glmU bifunctional N-a 56.2 51 0.0011 33.4 8.2 68 4-71 59-130 (482)
327 PRK15480 glucose-1-phosphate t 55.9 1.8E+02 0.0039 27.3 14.3 67 4-71 62-132 (292)
328 cd04198 eIF-2B_gamma_N The N-t 54.3 81 0.0018 27.8 8.4 69 4-74 59-133 (214)
329 KOG2571|consensus 54.0 13 0.00028 39.9 3.4 40 355-394 441-481 (862)
330 PRK14489 putative bifunctional 53.1 36 0.00077 33.2 6.3 50 26-75 78-128 (366)
331 KOG4179|consensus 53.1 2.3E+02 0.0051 27.8 11.4 98 273-381 294-405 (568)
332 TIGR01173 glmU UDP-N-acetylglu 53.0 35 0.00076 34.1 6.4 63 4-68 55-119 (451)
333 COG1861 SpsF Spore coat polysa 52.6 95 0.0021 27.7 8.0 99 274-383 22-121 (241)
334 cd06426 NTP_transferase_like_2 52.6 1.6E+02 0.0035 25.8 13.4 68 4-73 56-126 (220)
335 PRK14358 glmU bifunctional N-a 52.2 50 0.0011 33.5 7.4 67 4-72 62-131 (481)
336 cd02509 GDP-M1P_Guanylyltransf 52.1 81 0.0018 29.2 8.3 51 4-54 62-116 (274)
337 cd02538 G1P_TT_short G1P_TT_sh 51.7 72 0.0016 28.6 7.8 67 4-70 59-128 (240)
338 PF07507 WavE: WavE lipopolysa 51.2 66 0.0014 30.5 7.4 38 344-381 85-122 (311)
339 PRK14359 glmU bifunctional N-a 51.1 2.3E+02 0.005 28.0 11.9 57 4-62 56-115 (430)
340 PRK14356 glmU bifunctional N-a 50.8 34 0.00073 34.3 5.9 61 4-66 60-124 (456)
341 PRK00725 glgC glucose-1-phosph 49.1 1.6E+02 0.0035 29.3 10.4 101 274-384 40-157 (425)
342 cd04189 G1P_TT_long G1P_TT_lon 48.5 88 0.0019 27.9 7.8 65 4-70 58-126 (236)
343 cd02507 eIF-2B_gamma_N_like Th 46.9 2E+02 0.0044 25.3 10.0 92 274-377 25-124 (216)
344 PF02485 Branch: Core-2/I-Bran 45.4 1.8E+02 0.0038 26.2 9.3 105 271-382 1-115 (244)
345 COG2266 GTP:adenosylcobinamide 45.4 1.9E+02 0.0041 24.8 8.5 84 283-380 28-112 (177)
346 cd04183 GT2_BcE_like GT2_BcbE_ 44.9 1.1E+02 0.0024 27.1 7.8 48 16-63 71-120 (231)
347 PF01983 CofC: Guanylyl transf 44.8 22 0.00048 31.7 3.0 60 330-391 64-124 (217)
348 PRK00560 molybdopterin-guanine 44.7 1.6E+02 0.0034 25.6 8.5 79 279-377 32-114 (196)
349 cd02541 UGPase_prokaryotic Pro 44.7 62 0.0014 29.6 6.3 55 16-70 94-150 (267)
350 PRK05293 glgC glucose-1-phosph 44.2 1.9E+02 0.0041 28.1 9.9 98 274-382 28-143 (380)
351 cd02524 G1P_cytidylyltransfera 43.5 57 0.0012 29.7 5.8 46 26-72 102-148 (253)
352 PRK14359 glmU bifunctional N-a 43.5 2.8E+02 0.0062 27.3 11.2 89 274-376 24-115 (430)
353 COG1210 GalU UDP-glucose pyrop 43.4 55 0.0012 30.2 5.3 55 330-384 98-154 (291)
354 PRK00844 glgC glucose-1-phosph 43.2 1.5E+02 0.0032 29.3 9.0 101 274-384 30-145 (407)
355 TIGR01105 galF UTP-glucose-1-p 42.3 1.1E+02 0.0024 28.8 7.5 54 16-70 98-159 (297)
356 TIGR01099 galU UTP-glucose-1-p 41.3 74 0.0016 28.9 6.2 56 16-71 94-151 (260)
357 TIGR01208 rmlA_long glucose-1- 40.9 3.3E+02 0.0072 26.1 14.5 68 3-71 57-127 (353)
358 PRK13385 2-C-methyl-D-erythrit 40.5 99 0.0022 27.6 6.8 62 6-69 61-127 (230)
359 PF04028 DUF374: Domain of unk 39.9 1.4E+02 0.0031 21.5 6.0 58 303-365 11-68 (74)
360 PF01793 Glyco_transf_15: Glyc 38.8 1.1E+02 0.0024 29.2 6.8 115 267-384 53-204 (328)
361 PF01697 Glyco_transf_92: Glyc 38.4 54 0.0012 30.3 4.8 67 2-70 46-137 (285)
362 PRK14357 glmU bifunctional N-a 38.1 1.3E+02 0.0028 30.0 7.9 58 16-73 63-122 (448)
363 cd02516 CDP-ME_synthetase CDP- 38.0 61 0.0013 28.5 4.9 53 16-70 70-126 (218)
364 COG1207 GlmU N-acetylglucosami 38.0 3.1E+02 0.0068 27.2 9.7 92 283-384 31-126 (460)
365 PLN03153 hypothetical protein; 37.8 70 0.0015 32.4 5.5 53 339-391 187-247 (537)
366 TIGR01207 rmlA glucose-1-phosp 37.8 1.7E+02 0.0037 27.3 8.0 64 5-69 59-126 (286)
367 PRK15460 cpsB mannose-1-phosph 37.4 4.6E+02 0.0099 26.6 12.9 120 274-402 31-161 (478)
368 TIGR02623 G1P_cyt_trans glucos 37.2 1E+02 0.0022 28.1 6.4 48 24-72 101-148 (254)
369 cd02508 ADP_Glucose_PP ADP-glu 36.9 98 0.0021 26.9 6.0 49 24-73 91-142 (200)
370 PRK09451 glmU bifunctional N-a 36.3 88 0.0019 31.4 6.3 63 4-68 60-124 (456)
371 COG1442 RfaJ Lipopolysaccharid 35.8 4E+02 0.0087 25.5 12.4 117 271-390 3-132 (325)
372 PLN02436 cellulose synthase A 35.7 1E+02 0.0022 34.2 6.7 56 266-321 362-420 (1094)
373 PF03552 Cellulose_synt: Cellu 35.4 53 0.0012 34.7 4.5 54 330-383 167-230 (720)
374 COG4122 Predicted O-methyltran 35.2 91 0.002 27.9 5.4 59 5-69 99-160 (219)
375 cd04197 eIF-2B_epsilon_N The N 34.5 3.2E+02 0.0069 24.0 11.5 100 274-381 25-129 (217)
376 PLN02400 cellulose synthase 34.4 1.1E+02 0.0024 34.0 6.7 56 266-321 353-411 (1085)
377 PF05212 DUF707: Protein of un 34.3 3.4E+02 0.0074 25.4 8.9 138 38-193 114-258 (294)
378 TIGR00454 conserved hypothetic 34.2 1.6E+02 0.0035 25.3 6.8 63 4-69 54-118 (183)
379 PLN02915 cellulose synthase A 33.7 1.2E+02 0.0026 33.6 6.8 56 266-321 284-342 (1044)
380 KOG3765|consensus 33.4 49 0.0011 32.4 3.7 45 146-190 308-352 (386)
381 TIGR00453 ispD 2-C-methyl-D-er 33.0 1.4E+02 0.0031 26.2 6.5 43 27-69 76-120 (217)
382 PRK00576 molybdopterin-guanine 32.8 82 0.0018 26.8 4.7 45 26-70 57-105 (178)
383 PRK14354 glmU bifunctional N-a 32.5 1.2E+02 0.0026 30.3 6.6 53 17-69 67-122 (458)
384 PF09258 Glyco_transf_64: Glyc 31.3 53 0.0012 30.0 3.4 57 16-74 53-109 (247)
385 PF05060 MGAT2: N-acetylglucos 31.3 1.2E+02 0.0027 29.1 5.9 52 135-188 234-292 (356)
386 COG1209 RfbA dTDP-glucose pyro 30.9 4.4E+02 0.0096 24.5 13.1 142 14-179 72-214 (286)
387 PF04666 Glyco_transf_54: N-Ac 30.1 56 0.0012 30.7 3.4 30 39-68 168-197 (297)
388 PRK02862 glgC glucose-1-phosph 27.4 4.3E+02 0.0092 26.3 9.4 101 274-384 28-144 (429)
389 PRK00155 ispD 2-C-methyl-D-ery 27.1 1.9E+02 0.0041 25.6 6.3 52 16-69 72-125 (227)
390 cd01461 vWA_interalpha_trypsin 26.7 3.6E+02 0.0078 22.2 8.0 13 302-314 101-113 (171)
391 PF11181 YflT: Heat induced st 26.3 1.1E+02 0.0025 23.4 4.0 33 274-309 2-34 (103)
392 KOG1111|consensus 26.2 2.1E+02 0.0046 27.7 6.3 59 271-334 196-257 (426)
393 PRK14500 putative bifunctional 26.1 4.5E+02 0.0098 25.4 8.9 84 283-381 187-272 (346)
394 KOG2791|consensus 25.2 3.3E+02 0.0071 26.0 7.2 29 270-299 118-146 (455)
395 PF15224 SCRG1: Scrapie-respon 23.4 57 0.0012 22.6 1.5 13 268-280 66-78 (78)
396 PF05045 RgpF: Rhamnan synthes 23.3 2.4E+02 0.0053 28.8 6.8 78 304-388 1-85 (498)
397 PF04724 Glyco_transf_17: Glyc 23.1 3.9E+02 0.0084 25.9 7.8 97 274-377 84-201 (356)
398 TIGR00334 5S_RNA_mat_M5 ribonu 22.7 2.9E+02 0.0062 23.7 5.9 10 355-364 48-57 (174)
399 KOG1971|consensus 22.1 1.4E+02 0.0031 29.2 4.5 59 6-68 144-203 (415)
400 PF03028 Dynein_heavy: Dynein 22.1 3.5E+02 0.0075 29.1 8.0 85 289-381 106-195 (707)
401 PRK10122 GalU regulator GalF; 22.1 2.6E+02 0.0057 26.2 6.4 55 16-71 98-160 (297)
402 KOG0780|consensus 22.0 2.8E+02 0.0062 27.2 6.4 75 283-360 199-273 (483)
403 PF05212 DUF707: Protein of un 21.8 78 0.0017 29.4 2.6 114 268-393 40-155 (294)
404 TIGR02092 glgD glucose-1-phosp 21.6 1.8E+02 0.004 28.0 5.5 100 274-383 27-141 (369)
405 PF03314 DUF273: Protein of un 21.6 88 0.0019 27.6 2.7 28 30-57 31-59 (222)
406 cd02537 GT8_Glycogenin Glycoge 20.8 2.4E+02 0.0053 25.4 5.7 28 350-378 85-112 (240)
407 COG0287 TyrA Prephenate dehydr 20.8 4E+02 0.0086 24.8 7.1 92 284-387 76-167 (279)
408 TIGR02460 osmo_MPGsynth mannos 20.5 77 0.0017 30.2 2.3 39 27-66 143-184 (381)
409 PLN02241 glucose-1-phosphate a 20.5 7.6E+02 0.017 24.5 9.7 101 274-384 28-150 (436)
410 COG1207 GlmU N-acetylglucosami 20.3 4E+02 0.0087 26.5 7.1 67 4-71 57-127 (460)
No 1
>KOG3737|consensus
Probab=100.00 E-value=2.2e-35 Score=267.11 Aligned_cols=243 Identities=59% Similarity=1.011 Sum_probs=230.6
Q ss_pred cCCCCCCCCCC-CCCCCCCCCccccCcHhHHhhhhhhhhhcccceecccccCCCCCCCcccccccccccCCCCCCceEEE
Q psy8674 196 KLGNLEPPLEP-YKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVI 274 (439)
Q Consensus 196 ~~~~~~~~~~~-~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vsii 274 (439)
.++++.++.|. ...++|..|+|..+.++...+.++..+++|+|.+.||.++++|.++|.|+..|+...||..+|+.|||
T Consensus 81 ~LGNfEPKepe~P~~gPGE~gkp~~l~pe~k~a~~AsekEfGfN~~~SDmISm~R~v~D~R~EECkhWdYpe~Lpt~SVv 160 (603)
T KOG3737|consen 81 ILGNFEPKEPEPPVGGPGEKGKPLVLGPEFKQAIQASEKEFGFNMVASDMISMDRNVNDLRQEECKHWDYPENLPTSSVV 160 (603)
T ss_pred ccCCCCCCCCCCCCCCCCcCCcccccChhHHHHHHHHHHhhCcceeehhhhhcccCccccCHhhccccCCcccCCcceEE
Confidence 38999998864 55689999999999888888889999999999999999999999999999999999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC
Q psy8674 275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR 354 (439)
Q Consensus 275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~ 354 (439)
|+.+|+.|..|.+++.|++..+++.+..|||+|||-|+.+.+.+.+++|...+.+.|++++++++.|...|+-.|+..|+
T Consensus 161 iVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGlVkV~Rne~REGLI~aRSiGA~~at 240 (603)
T KOG3737|consen 161 IVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGLVKVFRNERREGLIQARSIGAQKAT 240 (603)
T ss_pred EEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcCEEEEEecchhhhhhhhhccchhhcc
Confidence 99999999999999999999998888889999999999999999999999999989999999999999999999999999
Q ss_pred CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCCCC-CceeeeeccceeEeecCCHHHHhh
Q psy8674 355 GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDH-HYRGIFEWGMLYKENELPEREAKK 433 (439)
Q Consensus 355 ~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~w~~~~~~~~~~~~~~~~ 433 (439)
|+.++|||+.|++..+|+..|++++.++..++.+|.||.||.++|+|.+.||+.. +++|.|+|+|.+++.+++.+|..+
T Consensus 241 GeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLyKe~~~t~rE~r~ 320 (603)
T KOG3737|consen 241 GEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLYKEVPLTPREKRL 320 (603)
T ss_pred ccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhheeccCCCCHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999866 789999999999999999999998
Q ss_pred ccCCC
Q psy8674 434 RKYNR 438 (439)
Q Consensus 434 ~~~~~ 438 (439)
||-++
T Consensus 321 Rkhns 325 (603)
T KOG3737|consen 321 RKHNS 325 (603)
T ss_pred hhccC
Confidence 87654
No 2
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.97 E-value=1.2e-29 Score=240.48 Aligned_cols=174 Identities=53% Similarity=1.013 Sum_probs=140.2
Q ss_pred hcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCccccccc
Q psy8674 12 RFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVY 91 (439)
Q Consensus 12 ~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 91 (439)
+..++|++|++++|.|+++|+|.|+++|+|+||+|||+|++++|+||+.|++.+.+++..+++|.+...+...+.+....
T Consensus 55 ~~~~~v~vi~~~~n~G~~~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~ 134 (299)
T cd02510 55 KYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSS 134 (299)
T ss_pred hcCCcEEEEEcCCCCCHHHHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCC
Confidence 33358999999999999999999999999999999999999999999999999998888888887766555444433211
Q ss_pred CCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHh
Q psy8674 92 EPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMC 171 (439)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~ 171 (439)
....+.+.|.+.+.+........ .......+..+++++|+||++||++|+++|||||+|++|++||+|||+|++++
T Consensus 135 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~ 210 (299)
T cd02510 135 ---GDARGGFDWSLHFKWLPLPEEER-RRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQC 210 (299)
T ss_pred ---CceeEEecccceeccccCCHHHh-hhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHc
Confidence 11345566655555444433322 22233456678888999999999999999999999998888999999999999
Q ss_pred CCcEEEecccceeccccc
Q psy8674 172 GGSIEWVPCSRIVSLIRP 189 (439)
Q Consensus 172 G~~i~~~p~~~v~H~~~~ 189 (439)
|++++++|.+.|.|..+.
T Consensus 211 G~~i~~~p~a~v~H~~~~ 228 (299)
T cd02510 211 GGSIEIVPCSRVGHIFRR 228 (299)
T ss_pred CCeEEEeeccEEEEeccc
Confidence 999999999999999863
No 3
>KOG3738|consensus
Probab=99.96 E-value=7.1e-30 Score=232.04 Aligned_cols=198 Identities=40% Similarity=0.722 Sum_probs=183.1
Q ss_pred hhhhhhcccceecccccCCCCCCCcccccccccccCCCCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEe
Q psy8674 229 DASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVD 308 (439)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvd 308 (439)
++.++.+.+|+..|+.+...|.+|++|++.|....|..++|..||||..+||..+.|.+++.|++++++.++..|||+||
T Consensus 84 ed~y~~~~fnq~esd~l~~~r~i~dtRh~qC~~~~y~~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVD 163 (559)
T KOG3738|consen 84 EDPYKANSFNQEESDKLNPTRKIPDTRHPQCRDVDYKVDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVD 163 (559)
T ss_pred CchhhcCccchhhhhhhCCCCccccccccccccceeecCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEec
Confidence 45567889999999999999999999999999999999999999999999999899999999999999999889999999
Q ss_pred CCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674 309 DFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 388 (439)
Q Consensus 309 d~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 388 (439)
|+|.|.+.-..+.++ + +++++++.++.|....++.|+..|++.++.|||+.+++..+||+.|++.+..+...+|+
T Consensus 164 D~S~Dped~~~L~ri----~-kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVs 238 (559)
T KOG3738|consen 164 DFSQDPEDGKLLKRI----P-KVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVS 238 (559)
T ss_pred CCCCChHHHHHHhhh----h-eeeeecccchhhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceee
Confidence 999988644344433 3 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCCCceEEeecCCCCCceeeeeccceeEeecCCHHHHhhc
Q psy8674 389 PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKR 434 (439)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~ 434 (439)
|+||.|+.++|+|... +...+|+|||+++|+|+.++-+.+.+|
T Consensus 239 PiiDvIn~dnf~Y~~a---sadLrGGFDWsLhF~We~~~~eqr~sr 281 (559)
T KOG3738|consen 239 PIIDVINLDNFSYVGA---SADLRGGFDWSLHFKWEQMQLEQRESR 281 (559)
T ss_pred cccccccccccccccc---hhhhcCCcceEEEEEehhcCHHHHhhc
Confidence 9999999999999844 568899999999999999999998887
No 4
>KOG3736|consensus
Probab=99.96 E-value=1.9e-29 Score=247.20 Aligned_cols=219 Identities=50% Similarity=0.841 Sum_probs=198.6
Q ss_pred CCCCccccCcHhHHhhhhhhhhhcccceecccccCCCCCCCccccccccc-ccCCCCCCceEEEEEecCCChhHHHHHHH
Q psy8674 212 GEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKY-WDYPLDLPKASVILVFHNEGFSSLMRTVH 290 (439)
Q Consensus 212 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~vsiiip~~n~~~~~l~~~l~ 290 (439)
+..|. ..++.......+..++.+++|.++|+++++.|.+||.|.+.|.. ..+...+|..||||+.+||.+..|.+++.
T Consensus 85 ~~~g~-~~~~~~~~~~~~~~~~~~~~N~~~Sd~I~l~Rsl~D~r~~~C~~~~~~~~~Lp~~Svii~f~nE~~s~llRtv~ 163 (578)
T KOG3736|consen 85 GGGGK-VKLPEAEEDLEDEGYEKNAFNALLSDRISLNRSLPDLRHPECKKLKYYSDKLPTTSVIIIFHNEAWSTLLRTVH 163 (578)
T ss_pred cccCc-ccCCcchHHHHHHHhhcccchhhhhhcccccCCCcchhchhhhhccccccccCCCceEEEEecCCCcchhheEE
Confidence 33444 45556666677777999999999999999999999999999977 44557799999999999999999999999
Q ss_pred HHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCC
Q psy8674 291 SIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLN 370 (439)
Q Consensus 291 sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~ 370 (439)
|+.+.+.+.+..|||+|||.|+.......++++.+.+.. +++++.+++.|...|++.|+..|+||.++|||+.+++..+
T Consensus 164 Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~-v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~g 242 (578)
T KOG3736|consen 164 SVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSK-VRILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVG 242 (578)
T ss_pred eehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcc-eeEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecC
Confidence 999999888888999999999988866678999888774 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCCCCCceeeeeccceeEeecCCHHHHhhcc
Q psy8674 371 WLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK 435 (439)
Q Consensus 371 ~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~ 435 (439)
||+.|++.+..+...+|||+||.|+.++|+|.+. +...+|+|+|.+.|+|+.+|.++++++.
T Consensus 243 WLePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~---~~~~rGgFdW~l~f~w~~lP~~~~~~~~ 304 (578)
T KOG3736|consen 243 WLEPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQ---SELMRGGFDWELTFKWERLPLPEEKRRE 304 (578)
T ss_pred cchHHHHHhhhcCceeecceEEeecCcCceeccc---CccceeeeecceeEEeccCCccHhhccc
Confidence 9999999999999999999999999999999975 3577999999999999999999998874
No 5
>KOG3737|consensus
Probab=99.96 E-value=4e-30 Score=233.09 Aligned_cols=193 Identities=64% Similarity=1.183 Sum_probs=184.4
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 81 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 81 (439)
|+++|++|+..++..+++++++++-|+-.||-+|++.|.|++|+|||+.|+|.-+||..+++.+.++...+.+|.++.++
T Consensus 202 LkekLDeYv~~fnGlVkV~Rne~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId 281 (603)
T KOG3737|consen 202 LKEKLDEYVKLFNGLVKVFRNERREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGID 281 (603)
T ss_pred HHHHHHHHHHHhcCEEEEEecchhhhhhhhhccchhhccccEEEEEecceeeecccccccccccccCceEEEEeeeeeec
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCC-ccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 82 YQTWEFRSVYEPDH-HYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
..++++.+.+|+.. ..+|.|.|++.++...++..+...+...++|+++|+..|+.++|.|+.|.++|.|||++.+||+|
T Consensus 282 ~n~~EyrpvyG~dn~h~rGifeWgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGE 361 (603)
T KOG3737|consen 282 GNTYEYRPVYGGDNDHARGIFEWGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGE 361 (603)
T ss_pred CCceEEeeccCCcchhhcchhhhhheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCcceeecCc
Confidence 99999999988876 68899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCcEEEecccceecccccccccC
Q psy8674 161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPVFKAD 194 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~~~~ 194 (439)
.++|++++|++|++|.++|.+.|.|.+|...-..
T Consensus 362 nfElSfKIWQCGG~i~fVPCSrVGHvYR~~mpy~ 395 (603)
T KOG3737|consen 362 NFELSFKIWQCGGKILFVPCSRVGHVYRSLMPYQ 395 (603)
T ss_pred ceeEEEEEEeeCCEEEEEEccccchhhhcccccc
Confidence 9999999999999999999999999998665443
No 6
>KOG3736|consensus
Probab=99.95 E-value=7.8e-29 Score=242.82 Aligned_cols=183 Identities=53% Similarity=1.012 Sum_probs=173.7
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 81 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 81 (439)
+++.|++|++++. .+++++++++.|.-.||++|++.|+||+++|||+.|++..+||+.+++.+.++...+++|.++.++
T Consensus 189 l~~~Ld~y~k~~~-~v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~PvID~Id 267 (578)
T KOG3736|consen 189 LKDKLEEYVKRFS-KVRILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCPVIDVID 267 (578)
T ss_pred hhhhhHHHHhhhc-ceeEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecceEEeec
Confidence 4566999999998 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN 161 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED 161 (439)
..++.|... ....+|+|+|.+.|.|..+|......+..++.|+++|++.|+.|+|.|+.|.++|+||+++.+||+|.
T Consensus 268 ~~tf~y~~~---~~~~rGgFdW~l~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGEN 344 (578)
T KOG3736|consen 268 DNTFEYEKQ---SELMRGGFDWELTFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGEN 344 (578)
T ss_pred CcCceeccc---CccceeeeecceeEEeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccCccccccccChhh
Confidence 999998864 45677999999999999999888888788899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCcEEEecccceecccc
Q psy8674 162 FELSFKIWMCGGSIEWVPCSRIVSLIR 188 (439)
Q Consensus 162 ~Dl~~Rl~~~G~~i~~~p~~~v~H~~~ 188 (439)
+||++|+|++|+++...|.+.|.|++|
T Consensus 345 lElSfrvWqCGG~lei~PCSrVGHifR 371 (578)
T KOG3736|consen 345 LELSFRVWQCGGRLEIVPCSRVGHIFR 371 (578)
T ss_pred ceeeEEEeccCCeEEecCccceeeeee
Confidence 999999999999999999999999987
No 7
>KOG3738|consensus
Probab=99.94 E-value=8.8e-28 Score=218.46 Aligned_cols=177 Identities=43% Similarity=0.878 Sum_probs=166.4
Q ss_pred HHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCccccc
Q psy8674 10 IERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRS 89 (439)
Q Consensus 10 ~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 89 (439)
+.+-+ ++++++|+++.|+-..|++|+..|+|.++.|||+.|++..+||+.|++.+.++...+|+|.++.++.+++.|..
T Consensus 175 L~ri~-kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~ 253 (559)
T KOG3738|consen 175 LKRIP-KVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVG 253 (559)
T ss_pred Hhhhh-eeeeecccchhhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeeccccccccccccccc
Confidence 44554 99999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred ccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHH
Q psy8674 90 VYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIW 169 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~ 169 (439)
.....+|+|+|.++|+|+..+......+.++..|+++|.+.|+.|+|.|++|.++|.||..+.+||+|.+|+++|+|
T Consensus 254 ---asadLrGGFDWsLhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW 330 (559)
T KOG3738|consen 254 ---ASADLRGGFDWSLHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVW 330 (559)
T ss_pred ---chhhhcCCcceEEEEEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEE
Confidence 45668899999999999999988888888999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEecccceecccccc
Q psy8674 170 MCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 170 ~~G~~i~~~p~~~v~H~~~~~ 190 (439)
++|+.+..+|.++|.|.+|..
T Consensus 331 ~CGGslEIvPCSRVGHVFRkr 351 (559)
T KOG3738|consen 331 QCGGSLEIVPCSRVGHVFRKR 351 (559)
T ss_pred eeCCeeEEEeccchhhhhhcc
Confidence 999999999999999997543
No 8
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.91 E-value=3.6e-23 Score=196.05 Aligned_cols=155 Identities=52% Similarity=0.902 Sum_probs=133.8
Q ss_pred EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHH-HHHHcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674 272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED-YIQRFNGKVRLIRNTEREGLIRTRSRGA 350 (439)
Q Consensus 272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~-~~~~~~~~v~~i~~~~~~g~~~a~n~g~ 350 (439)
|||||+||+..+.|.+||+|+.+|+++...+|||||||||+|+|.+ ++.+ ......+.+++++.+.|.|++.|+|.|+
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~-~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~ 79 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELK-LLLEEYYKKYLPKVKVLRLKKREGLIRARIAGA 79 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHH-HHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHH
Confidence 7999999997689999999999999875445999999999999988 5544 3333344799999999999999999999
Q ss_pred hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCCCCCceeeeeccceeEeecCCHHH
Q psy8674 351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 430 (439)
Q Consensus 351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~ 430 (439)
+.|+|+||+|||+|+.++++||+.|++.+.+++..+++|.+..++..++.|.... ....|.+.|.+.+.|...+.+.
T Consensus 80 ~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 156 (299)
T cd02510 80 RAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSS---GDARGGFDWSLHFKWLPLPEEE 156 (299)
T ss_pred HHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCC---CceeEEecccceeccccCCHHH
Confidence 9999999999999999999999999999999999999999999998888887432 2257889999999888776655
No 9
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=192.78 Aligned_cols=174 Identities=22% Similarity=0.250 Sum_probs=121.1
Q ss_pred HHHHHhc-CCcEEEEEecCCCChhHHHHhhhhhccCc---EEEEecCCcccCCCchHHHHHHHhcCCCeEee-eeeeccc
Q psy8674 7 EDYIERF-NGKVRLIRNTEREGLIRTRSRGAKESRGE---VIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGID 81 (439)
Q Consensus 7 ~~~~~~~-~~~i~~i~~~~n~G~a~arN~G~~~A~g~---~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~-~~~~~~~ 81 (439)
.+.++.. .+++++|.+.+|.|+|+|.|+|++.|.++ |+++||+|+.+++++|+++++++++++..++. +.+...+
T Consensus 47 ~~~~~~~~~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~ 126 (305)
T COG1216 47 LEALKARFFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYD 126 (305)
T ss_pred HHHHHhhcCCcEEEEEcCCCccchhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCC
Confidence 3444443 35999999999999999999999999765 99999999999999999999999998776554 4443332
Q ss_pred CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN 161 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED 161 (439)
........ +. ....+.+... ..+..... ...........++.|+||+++|++|+++|+|||+||+|. ||
T Consensus 127 ~~~~~~~~--~~---~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~-eD 195 (305)
T COG1216 127 ESLYIDRR--GG---ESDGLTGGWR----ASPLLEIA-PDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIYY-ED 195 (305)
T ss_pred CCcchhee--cc---ccccccccce----eccccccc-ccccchhhhhhhcceeeeEEcHHHHHHhCCCCcccceee-hH
Confidence 22211111 00 0000111000 00000000 000000111115789999999999999999999999986 99
Q ss_pred hHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674 162 FELSFKIWMCGGSIEWVPCSRIVSLIRPVF 191 (439)
Q Consensus 162 ~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~ 191 (439)
+|||+|++++|+++.++|.+.++|......
T Consensus 196 ~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~ 225 (305)
T COG1216 196 VDLCLRARKAGYKIYYVPDAIIYHKIGSSK 225 (305)
T ss_pred HHHHHHHHHcCCeEEEeeccEEEEeccCCC
Confidence 999999999999999999999999865443
No 10
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.87 E-value=2.3e-21 Score=184.97 Aligned_cols=116 Identities=25% Similarity=0.361 Sum_probs=105.0
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHH
Q psy8674 267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR 346 (439)
Q Consensus 267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~ 346 (439)
.+|.||||||+||++ +.|.+||+|+++|+++++ |||||||||+|+|.+ +++++.+..+ ++++++ .+|.|.+.|+
T Consensus 4 ~~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~~--EIIiVdDgStD~t~~-i~~~~~~~~~-~i~vi~-~~n~G~~~ar 77 (328)
T PRK10073 4 STPKLSIIIPLYNAG-KDFRAFMESLIAQTWTAL--EIIIVNDGSTDNSVE-IAKHYAENYP-HVRLLH-QANAGVSVAR 77 (328)
T ss_pred CCCeEEEEEeccCCH-HHHHHHHHHHHhCCCCCe--EEEEEeCCCCccHHH-HHHHHHhhCC-CEEEEE-CCCCChHHHH
Confidence 357899999999999 999999999999999887 999999999999987 9999887765 799886 5699999999
Q ss_pred HHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674 347 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 388 (439)
Q Consensus 347 n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 388 (439)
|.|++.|+|+||+|+|+|+.+.|++++.+++.+..++..+++
T Consensus 78 N~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 78 NTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 999999999999999999999999999999998876654444
No 11
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.85 E-value=4.3e-21 Score=180.24 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=115.0
Q ss_pred HHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhc---cCcEEEEecCCcccCCCchHHHHHHHhcCC-Ce-Eeeeeeec
Q psy8674 5 KLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKES---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KI-MTVPVIDG 79 (439)
Q Consensus 5 ~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A---~g~~i~flD~D~~~~~~~l~~l~~~~~~~~-~~-~v~~~~~~ 79 (439)
.+++.+++++ +|+++++++|.|+|+|+|.|++.| .+|||+|||+|+.+++++|+.+++.+++++ .. +++|.+
T Consensus 36 ~~~~~~~~~~-~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-- 112 (281)
T TIGR01556 36 PLKNARLRGQ-KIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRF-- 112 (281)
T ss_pred hHHHHhccCC-CeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeE--
Confidence 4556666665 899999999999999999999998 689999999999999999999999998754 33 444432
Q ss_pred ccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccc
Q psy8674 80 IDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGG 159 (439)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ 159 (439)
++.......+ .....+ +.+ . ... ........+.....++++++||++|+++|+|||.||+++
T Consensus 113 ~~~~~~~~~~----~~~~~~-~~~----~--~~~------~~~~~~~~~~~~~~~sg~li~~~~~~~iG~fde~~fi~~- 174 (281)
T TIGR01556 113 FDRGTSRRLP----AIHLDG-LLL----R--QIS------LDGLTTPQKTSFLISSGCLITREVYQRLGMMDEELFIDH- 174 (281)
T ss_pred EcCCCcccCC----ceeecc-cce----e--eec------ccccCCceeccEEEcCcceeeHHHHHHhCCccHhhcccc-
Confidence 1111100000 000000 000 0 000 000112223334444556899999999999999999875
Q ss_pred hhhHHHHHHHHhCCcEEEecccceecccc
Q psy8674 160 ENFELSFKIWMCGGSIEWVPCSRIVSLIR 188 (439)
Q Consensus 160 ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~ 188 (439)
||+|||+|++++|+++.++|++.++|...
T Consensus 175 ~D~e~~~R~~~~G~~i~~~~~~~~~H~~g 203 (281)
T TIGR01556 175 VDTEWSLRAQNYGIPLYIDPDIVLEHRIG 203 (281)
T ss_pred hHHHHHHHHHHCCCEEEEeCCEEEEEecC
Confidence 99999999999999999999999999754
No 12
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.85 E-value=5.3e-21 Score=178.98 Aligned_cols=166 Identities=23% Similarity=0.379 Sum_probs=115.3
Q ss_pred HHHHHHHHhcCCcEEEEEecCC---CChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHH---HHhcCCCe-Eeeee
Q psy8674 4 KKLEDYIERFNGKVRLIRNTER---EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA---PIYSDRKI-MTVPV 76 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n---~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~---~~~~~~~~-~v~~~ 76 (439)
+.+.++.++.. .+++|..+.+ .|.|.|||+|++.|+|++|+|+|+|++++|++++.++. .+..++.. ++.|.
T Consensus 50 ~~l~~~~~~~~-~~~~i~~~~~~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~ 128 (281)
T PF10111_consen 50 EELKKLCEKNG-FIRYIRHEDNGEPFSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPC 128 (281)
T ss_pred HHHHHHHhccC-ceEEEEcCCCCCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 56777777765 4557766644 59999999999999999999999999999999999999 67665544 44443
Q ss_pred eecccCCC-cccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCC
Q psy8674 77 IDGIDYQT-WEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLL 155 (439)
Q Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~ 155 (439)
. ..+... ...... ....+.. ...... ..............|+|++++|+.|.++|||||+|.
T Consensus 129 ~-yl~~~~~~~~~~~--------~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~ 191 (281)
T PF10111_consen 129 L-YLSEEGSEKFYSQ--------FKNLWDH-----EFLESF---ISGKNSLWEFIAFASSCFLINREDFLEIGGFDERFR 191 (281)
T ss_pred e-eccchhhHHHhhc--------chhcchH-----HHHHHH---hhccccccccccccceEEEEEHHHHHHhCCCCcccc
Confidence 2 221111 100000 0000000 000000 001112222234467999999999999999999999
Q ss_pred CccchhhHHHHHHHHhCCcEEEecccceeccc
Q psy8674 156 VWGGENFELSFKIWMCGGSIEWVPCSRIVSLI 187 (439)
Q Consensus 156 ~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~ 187 (439)
.||+||.||++||.+.|+.+...|+..++|..
T Consensus 192 G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~~~ 223 (281)
T PF10111_consen 192 GWGYEDIDFGYRLKKAGYKFKRSPDYLVYHSH 223 (281)
T ss_pred CCCcchHHHHHHHHHcCCcEecChHHhccccc
Confidence 99999999999999999999999999998864
No 13
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.83 E-value=5.8e-20 Score=163.07 Aligned_cols=118 Identities=18% Similarity=0.341 Sum_probs=102.3
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCC-cEEEEEcCCCCC---HHH
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREG---LIR 344 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~v~~i~~~~~~g---~~~ 344 (439)
|.||||||+||++ ..|.+||+|+.+|+++++ |||||||+|+|+|.+ +++++.+.++. +++++....+.| ++.
T Consensus 1 p~vsviip~~n~~-~~l~~~L~sl~~q~~~~~--eiivVdd~s~d~t~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 76 (196)
T cd02520 1 PGVSILKPLCGVD-PNLYENLESFFQQDYPKY--EILFCVQDEDDPAIP-VVRKLIAKYPNVDARLLIGGEKVGINPKVN 76 (196)
T ss_pred CCeEEEEecCCCC-ccHHHHHHHHHhccCCCe--EEEEEeCCCcchHHH-HHHHHHHHCCCCcEEEEecCCcCCCCHhHH
Confidence 5799999999999 999999999999999886 999999999999987 88888877652 466776666644 456
Q ss_pred HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674 345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV 390 (439)
Q Consensus 345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 390 (439)
++|.|++.++|||++|+|+|+.++|+||+.+++.+.++..++|++.
T Consensus 77 ~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 122 (196)
T cd02520 77 NLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL 122 (196)
T ss_pred HHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee
Confidence 7889999999999999999999999999999999877667777765
No 14
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.83 E-value=5.4e-20 Score=168.79 Aligned_cols=124 Identities=12% Similarity=0.067 Sum_probs=102.2
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHH
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR 348 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~ 348 (439)
|.+|||||+||++ +.|.++|+|+.+|+++...+|||||||+|+|+|.+ +++++......++.++....+.|++.|+|.
T Consensus 1 p~vsIiIp~~Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~-i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~ 78 (241)
T cd06427 1 PVYTILVPLYKEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIA-AARALRLPSIFRVVVVPPSQPRTKPKACNY 78 (241)
T ss_pred CeEEEEEecCCcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHH-HHHHhccCCCeeEEEecCCCCCchHHHHHH
Confidence 6799999999999 99999999999999986445999999999999987 887764321224555555677899999999
Q ss_pred HHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcC-CC-EEEEeeeeee
Q psy8674 349 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD-RK-IMTVPVIDGI 394 (439)
Q Consensus 349 g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~-~~-~~v~~~~~~~ 394 (439)
|++.++||||+|+|+|+.++++||.++++.+.+. +. +++++.+...
T Consensus 79 g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 126 (241)
T cd06427 79 ALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYY 126 (241)
T ss_pred HHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEee
Confidence 9999999999999999999999999999999754 33 4444544333
No 15
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.83 E-value=5.3e-20 Score=158.27 Aligned_cols=123 Identities=33% Similarity=0.509 Sum_probs=103.9
Q ss_pred EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHh
Q psy8674 272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 351 (439)
Q Consensus 272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~ 351 (439)
|||||+||+. +.|.+||+|+++|+...+ |||||||||+|++.+ +++++.+ .+.+++++..+++.|.+.++|.|++
T Consensus 1 Svvip~~n~~-~~l~~~l~sl~~q~~~~~--eiivvdd~s~d~~~~-~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~ 75 (169)
T PF00535_consen 1 SVVIPTYNEA-EYLERTLESLLKQTDPDF--EIIVVDDGSTDETEE-ILEEYAE-SDPNIRYIRNPENLGFSAARNRGIK 75 (169)
T ss_dssp EEEEEESS-T-TTHHHHHHHHHHHSGCEE--EEEEEECS-SSSHHH-HHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHH
T ss_pred CEEEEeeCCH-HHHHHHHHHHhhccCCCE--EEEEecccccccccc-ccccccc-ccccccccccccccccccccccccc
Confidence 8999999998 999999999999976666 999999999999877 8888876 3458999999999999999999999
Q ss_pred hcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCc
Q psy8674 352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTW 399 (439)
Q Consensus 352 ~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~ 399 (439)
.|+++|++++|+|+.+.++||+.+++.+.+++..++++.....+.+..
T Consensus 76 ~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 123 (169)
T PF00535_consen 76 HAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNR 123 (169)
T ss_dssp H--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTE
T ss_pred ccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCcc
Confidence 999999999999999999999999999999888777666555555543
No 16
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.82 E-value=1.5e-19 Score=167.83 Aligned_cols=110 Identities=25% Similarity=0.372 Sum_probs=98.3
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc-CCcEEEEEcCCCCCHHHH
Q psy8674 267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF-NGKVRLIRNTEREGLIRT 345 (439)
Q Consensus 267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~v~~i~~~~~~g~~~a 345 (439)
..|.||||||+||++ +.|.+||+|+++|+++++ |||||||||++ .+ .++++.+.+ +.+++++..+.|.|.+.|
T Consensus 3 ~~p~VSVIip~yN~~-~~l~~~l~Svl~Qt~~~~--EiIVVDDgS~~--~~-~~~~~~~~~~~~ri~~i~~~~n~G~~~a 76 (279)
T PRK10018 3 DNPLISIYMPTWNRQ-QLAIRAIKSVLRQDYSNW--EMIIVDDCSTS--WE-QLQQYVTALNDPRITYIHNDINSGACAV 76 (279)
T ss_pred CCCEEEEEEEeCCCH-HHHHHHHHHHHhCCCCCe--EEEEEECCCCC--HH-HHHHHHHHcCCCCEEEEECCCCCCHHHH
Confidence 468899999999999 999999999999999987 99999999985 23 566666543 347999999999999999
Q ss_pred HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcC
Q psy8674 346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD 382 (439)
Q Consensus 346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~ 382 (439)
+|.|++.|+|+||+|+|+|+.+.|++|+.+++.+...
T Consensus 77 ~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~ 113 (279)
T PRK10018 77 RNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQL 113 (279)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhC
Confidence 9999999999999999999999999999999988763
No 17
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.82 E-value=1.3e-19 Score=165.24 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=103.1
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc---CCcEEEEEcCCCCC-HHH
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF---NGKVRLIRNTEREG-LIR 344 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---~~~v~~i~~~~~~g-~~~ 344 (439)
|+||||||+||++ +.|.+||+|+.+|+++...+||||||| |+|+|.+ +++++...+ ..+++++...++.| ++.
T Consensus 1 p~vSViIp~yNe~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~-~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~ 77 (232)
T cd06437 1 PMVTVQLPVFNEK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVR-LAREIVEEYAAQGVNIKHVRRADRTGYKAG 77 (232)
T ss_pred CceEEEEecCCcH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHH-HHHHHHHHHhhcCCceEEEECCCCCCCchH
Confidence 5799999999999 999999999999999864569999998 8899887 777665432 23577776666667 588
Q ss_pred HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecC
Q psy8674 345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY 396 (439)
Q Consensus 345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~ 396 (439)
++|.|++.++|+||+|+|+|+.++|+||+.+...+.++..+++.+.+...+.
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~ 129 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINA 129 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcC
Confidence 9999999999999999999999999999998887766666677776544443
No 18
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.82 E-value=2e-19 Score=160.32 Aligned_cols=123 Identities=18% Similarity=0.279 Sum_probs=105.7
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHH
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR 348 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~ 348 (439)
|++|||||+||++++.|.+||+|+++|+++++ |||||||||+|++.+++++.+....+ +++++..+.+.|.+.++|.
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~--eiivvd~gs~d~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~a~n~ 77 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNW--ELCIADDASTDPEVKRVLKKYAAQDP-RIKVVFREENGGISAATNS 77 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCe--EEEEEeCCCCChHHHHHHHHHHhcCC-CEEEEEcccCCCHHHHHHH
Confidence 57999999999976889999999999998877 99999999999887767777665544 7888889999999999999
Q ss_pred HHhhcCCCEEEEEcCCCccCCCChHHHHHhhh-cCCCEEEEeeeeee
Q psy8674 349 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY-SDRKIMTVPVIDGI 394 (439)
Q Consensus 349 g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~ 394 (439)
|++.++++|++|+|+|+.++++|++.+++.+. .+...++.+.....
T Consensus 78 g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~ 124 (202)
T cd04184 78 ALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKI 124 (202)
T ss_pred HHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhc
Confidence 99999999999999999999999999999994 45555655544333
No 19
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.82 E-value=2.2e-19 Score=159.99 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=104.2
Q ss_pred EEEEEecCCC-hhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674 272 SVILVFHNEG-FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGA 350 (439)
Q Consensus 272 siiip~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~ 350 (439)
|||||+||++ .+.|.+||+|+++|+++++ |||||||||++++..++++++.++.+ ++++..++|.|.+.|+|.|+
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~--eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~ 76 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPD--EVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGL 76 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCc--EEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHH
Confidence 7999999986 2489999999999999876 99999999844444448888877653 88898899999999999999
Q ss_pred hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCC-CEEEEeeeeeecCCC
Q psy8674 351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQT 398 (439)
Q Consensus 351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~~ 398 (439)
+.++|+|++|+|+|+.++|++|+.+++.+++++ ..++++....++.+.
T Consensus 77 ~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (201)
T cd04195 77 KHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDG 125 (201)
T ss_pred HhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCC
Confidence 999999999999999999999999999997655 466666666655544
No 20
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.82 E-value=2.8e-19 Score=177.63 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=108.4
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 345 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a 345 (439)
...|++|||||+||++ +.|.+||+|+.+|+++....|||||||||+|+|.+ +++++.+.++ +++++..+++.|++.|
T Consensus 46 ~~~P~vsVIIP~yNe~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~-il~~~~~~~~-~v~v~~~~~~~Gka~A 122 (439)
T TIGR03111 46 GKLPDITIIIPVYNSE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQ-VFCRAQNEFP-GLSLRYMNSDQGKAKA 122 (439)
T ss_pred CCCCCEEEEEEeCCCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHH-HHHHHHHhCC-CeEEEEeCCCCCHHHH
Confidence 4578999999999999 99999999999999997556999999999999977 8888877765 6777767788999999
Q ss_pred HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeee
Q psy8674 346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVI 391 (439)
Q Consensus 346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~ 391 (439)
+|.|++.+++||++++|+|+.+++++++++++.+.+++. +++++.+
T Consensus 123 lN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~ 169 (439)
T TIGR03111 123 LNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVI 169 (439)
T ss_pred HHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEE
Confidence 999999999999999999999999999999999986665 4444544
No 21
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.81 E-value=1.9e-19 Score=160.45 Aligned_cols=151 Identities=17% Similarity=0.266 Sum_probs=106.5
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCC-CeEeeeeeecccC
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDY 82 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~ 82 (439)
+.++.+.++.+ +++++.+++|.|++.|+|.|++.|+|+||+|+|+|+.++|+||+.+++.+..++ ..++.+.......
T Consensus 48 ~~~~~~~~~~~-~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~ 126 (202)
T cd04184 48 RVLKKYAAQDP-RIKVVFREENGGISAATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDE 126 (202)
T ss_pred HHHHHHHhcCC-CEEEEEcccCCCHHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccC
Confidence 34555555554 899999999999999999999999999999999999999999999999995444 3444332211111
Q ss_pred CCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhh
Q psy8674 83 QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENF 162 (439)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~ 162 (439)
...... ..+ . . ...... .......++++++||++|+++||||+.+. ++||+
T Consensus 127 ~~~~~~----------~~~--~--~---~~~~~~----------~~~~~~~~~~~~~~r~~~~~iggf~~~~~--~~eD~ 177 (202)
T cd04184 127 GGKRSE----------PFF--K--P---DWSPDL----------LLSQNYIGHLLVYRRSLVRQVGGFREGFE--GAQDY 177 (202)
T ss_pred CCCEec----------ccc--C--C---CCCHHH----------hhhcCCccceEeEEHHHHHHhCCCCcCcc--cchhH
Confidence 110000 000 0 0 000000 01112346678999999999999999874 46999
Q ss_pred HHHHHHHHhCCcEEEeccccee
Q psy8674 163 ELSFKIWMCGGSIEWVPCSRIV 184 (439)
Q Consensus 163 Dl~~Rl~~~G~~i~~~p~~~v~ 184 (439)
||++|+.++|+++.+.|++.+.
T Consensus 178 ~l~~rl~~~g~~~~~~~~~~~~ 199 (202)
T cd04184 178 DLVLRVSEHTDRIAHIPRVLYH 199 (202)
T ss_pred HHHHHHHhccceEEEccHhhhh
Confidence 9999999999999999986443
No 22
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.81 E-value=2.5e-19 Score=161.07 Aligned_cols=120 Identities=23% Similarity=0.300 Sum_probs=105.0
Q ss_pred EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHh
Q psy8674 272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 351 (439)
Q Consensus 272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~ 351 (439)
|||||+||+. +.|.+||+|+++|+++++ |||||||||+|+|.+ +++++..+++..+.++..+.+.|.+.++|.|+.
T Consensus 1 sIvIp~yn~~-~~l~~~l~sl~~q~~~~~--eiiVvddgS~d~t~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~ 76 (214)
T cd04196 1 AVLMATYNGE-KYLREQLDSILAQTYKND--ELIISDDGSTDGTVE-IIKEYIDKDPFIIILIRNGKNLGVARNFESLLQ 76 (214)
T ss_pred CEEEEecCcH-HHHHHHHHHHHhCcCCCe--EEEEEeCCCCCCcHH-HHHHHHhcCCceEEEEeCCCCccHHHHHHHHHH
Confidence 6999999999 999999999999998876 999999999999877 899988876556788888999999999999999
Q ss_pred hcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeeec
Q psy8674 352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGID 395 (439)
Q Consensus 352 ~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~ 395 (439)
.++|+|++|+|+|+.+.|++|..+++.+..++. .++++.....+
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 121 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVD 121 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEEC
Confidence 999999999999999999999999999655444 55555444333
No 23
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.81 E-value=3.4e-19 Score=164.53 Aligned_cols=127 Identities=22% Similarity=0.255 Sum_probs=112.6
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 345 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a 345 (439)
..+|++|||||+||++ +.|.+||+|+.+|+++...+|||||||+|+|.|.+ +++++.+. +++++..+++.|++.+
T Consensus 26 ~~~~~isVvip~~n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~-~~~~~~~~---~v~~i~~~~~~g~~~a 100 (251)
T cd06439 26 AYLPTVTIIIPAYNEE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAE-IAREYADK---GVKLLRFPERRGKAAA 100 (251)
T ss_pred CCCCEEEEEEecCCcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHH-HHHHHhhC---cEEEEEcCCCCChHHH
Confidence 5678899999999999 99999999999999876335999999999999877 88877554 5888888999999999
Q ss_pred HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCC
Q psy8674 346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQ 397 (439)
Q Consensus 346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~ 397 (439)
+|.|++.+++||++|+|+|+.++++|++++++.+.++...++++.+...+.+
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~ 152 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGG 152 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCc
Confidence 9999999999999999999999999999999999877778888777665554
No 24
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.81 E-value=3.3e-19 Score=174.28 Aligned_cols=123 Identities=18% Similarity=0.269 Sum_probs=105.8
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC--CcEEEEEcCC----C
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN--GKVRLIRNTE----R 339 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~v~~i~~~~----~ 339 (439)
...|+||||||+||++ +.|.+||+|+.+|+++. .+|||||||+|+|+|.+ +++++.++++ .++++++.+. .
T Consensus 37 ~~~p~VSVIIpa~Ne~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~-i~~~~~~~~~~~~~i~vi~~~~~~~g~ 113 (384)
T TIGR03469 37 EAWPAVVAVVPARNEA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTAD-IARAAARAYGRGDRLTVVSGQPLPPGW 113 (384)
T ss_pred CCCCCEEEEEecCCcH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHH-HHHHHHHhcCCCCcEEEecCCCCCCCC
Confidence 4678999999999999 99999999999999984 24999999999999987 8898877654 2688886432 2
Q ss_pred CCHHHHHHHHHhhcC-----CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674 340 EGLIRTRSRGAKESR-----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 340 ~g~~~a~n~g~~~a~-----~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
.|++.|+|.|++.|+ +|+++|+|+|+.++|+|++++++.+++++..++++..
T Consensus 114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~ 170 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMV 170 (384)
T ss_pred cchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecc
Confidence 588899999999999 9999999999999999999999999887766665443
No 25
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.81 E-value=1.7e-19 Score=164.98 Aligned_cols=155 Identities=15% Similarity=0.101 Sum_probs=109.3
Q ss_pred CcEEEEEecCCCChhHHHHhhhhhccC---cEEEEecCCcccCCCchHHHH---HHHhcCCCeEee-eeeecccCCCccc
Q psy8674 15 GKVRLIRNTEREGLIRTRSRGAKESRG---EVIVFLDAHCEVGLNWLPPLL---APIYSDRKIMTV-PVIDGIDYQTWEF 87 (439)
Q Consensus 15 ~~i~~i~~~~n~G~a~arN~G~~~A~g---~~i~flD~D~~~~~~~l~~l~---~~~~~~~~~~v~-~~~~~~~~~~~~~ 87 (439)
++++++..++|.|+++|+|.|++.|+| +||+|+|+|+.++|+||+.++ ..+..++...+. +............
T Consensus 47 ~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (237)
T cd02526 47 EKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSP 126 (237)
T ss_pred CcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeecc
Confidence 479999999999999999999999998 999999999999999999995 555555544333 3222111110000
Q ss_pred ccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHH
Q psy8674 88 RSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFK 167 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~R 167 (439)
. .....+.. .. ...............++++++||++|+++||||+.+++ ++||+||++|
T Consensus 127 ~---------~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~-~~eD~d~~~r 185 (237)
T cd02526 127 G---------VRKSGYKL-RI----------QKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDLFI-DYVDTEWCLR 185 (237)
T ss_pred c---------eeccCccc-ee----------cccccCCceEeeeeeccceEEcHHHHHHhCCCCHHHcC-ccchHHHHHH
Confidence 0 00000000 00 00001112233455677899999999999999999975 4599999999
Q ss_pred HHHhCCcEEEecccceecccccc
Q psy8674 168 IWMCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 168 l~~~G~~i~~~p~~~v~H~~~~~ 190 (439)
+.++|+++.++|.+.++|.....
T Consensus 186 ~~~~G~~~~~~~~~~v~h~~~~~ 208 (237)
T cd02526 186 ARSKGYKIYVVPDAVLKHELGDK 208 (237)
T ss_pred HHHcCCcEEEEcCeEEEecccCc
Confidence 99999999999999999986544
No 26
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.80 E-value=4.3e-19 Score=162.98 Aligned_cols=121 Identities=22% Similarity=0.269 Sum_probs=104.8
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHhcC--CcCCcceEEEEeCCCChhhHHHHHHHHHHHcC-CcEEEEEcCCCCCHH
Q psy8674 267 DLPKASVILVFHNEGFSSLMRTVHSIIKRT--PAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIRNTEREGLI 343 (439)
Q Consensus 267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~--~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~v~~i~~~~~~g~~ 343 (439)
.+|+||||||+||++ +.|..+++++.++. +.++ |||||||||+|+|.+ +++++.+.++ ..+.++..++|.|++
T Consensus 7 ~~~~vsVvIp~yne~-~~l~~~l~~l~~~~~~~~~~--eiivvDdgS~D~t~~-i~~~~~~~~~~~~v~~~~~~~n~G~~ 82 (243)
T PLN02726 7 GAMKYSIIVPTYNER-LNIALIVYLIFKALQDVKDF--EIIVVDDGSPDGTQD-VVKQLQKVYGEDRILLRPRPGKLGLG 82 (243)
T ss_pred CCceEEEEEccCCch-hhHHHHHHHHHHHhccCCCe--EEEEEeCCCCCCHHH-HHHHHHHhcCCCcEEEEecCCCCCHH
Confidence 467899999999999 99999999887643 3344 999999999999987 8888877654 368888888999999
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674 344 RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 344 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
.|+|.|++.|+|+|++++|+|+.++|++|+.+++.+.+++..+|++..
T Consensus 83 ~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r 130 (243)
T PLN02726 83 TAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTR 130 (243)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEcc
Confidence 999999999999999999999999999999999999877766666543
No 27
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.80 E-value=6.8e-19 Score=174.91 Aligned_cols=123 Identities=19% Similarity=0.273 Sum_probs=109.2
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 345 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a 345 (439)
...|.+|||||+||++ +.+.+|++|+.+|+++++ |||||||||+|+|.+ .++++.++++ ++++++.++|.|++.|
T Consensus 51 ~~~p~vsViIp~yne~-~~i~~~l~sl~~q~yp~~--eiiVvdD~s~d~t~~-~l~~~~~~~~-~v~~i~~~~n~Gka~a 125 (420)
T PRK11204 51 KEYPGVSILVPCYNEG-ENVEETISHLLALRYPNY--EVIAINDGSSDNTGE-ILDRLAAQIP-RLRVIHLAENQGKANA 125 (420)
T ss_pred CCCCCEEEEEecCCCH-HHHHHHHHHHHhCCCCCe--EEEEEECCCCccHHH-HHHHHHHhCC-cEEEEEcCCCCCHHHH
Confidence 3568999999999999 999999999999999977 999999999999877 8888887765 7999988899999999
Q ss_pred HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeee
Q psy8674 346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDG 393 (439)
Q Consensus 346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~ 393 (439)
+|.|++.+++|+++++|+|+.++|++|+.+++.+++++. ++|++....
T Consensus 126 ln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~ 174 (420)
T PRK11204 126 LNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRI 174 (420)
T ss_pred HHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCcee
Confidence 999999999999999999999999999999999976555 555544433
No 28
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.80 E-value=2.5e-19 Score=159.61 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=111.7
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC-eEeeeeeecc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGI 80 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~ 80 (439)
+.+.+++|.++++ ++++.+++|.|+++|+|.|++.|+|+||+|+|+|++++|++|+.+++.+++++. .++++....+
T Consensus 44 t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 121 (201)
T cd04195 44 LNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEF 121 (201)
T ss_pred HHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEE
Confidence 4556777777765 999999999999999999999999999999999999999999999999987654 4554444333
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
.......... . . ............ ....+.++++++||++|+++|||++.. ++|
T Consensus 122 ~~~~~~~~~~----------~------~--~~~~~~~~~~~~-----~~~~~~~~~~~~rr~~~~~~g~~~~~~---~~e 175 (201)
T cd04195 122 DSDGNDIGKR----------R------L--PTSHDDILKFAR-----RRSPFNHPTVMFRKSKVLAVGGYQDLP---LVE 175 (201)
T ss_pred CCCCCeeccc----------c------C--CCCHHHHHHHhc-----cCCCCCChHHhhhHHHHHHcCCcCCCC---Cch
Confidence 2222111000 0 0 000000000000 011234557899999999999999872 459
Q ss_pred hhHHHHHHHHhCCcEEEecccceec
Q psy8674 161 NFELSFKIWMCGGSIEWVPCSRIVS 185 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~p~~~v~H 185 (439)
|++|++|+..+|+++.++|+..++|
T Consensus 176 D~~~~~r~~~~g~~~~~~~~~~~~y 200 (201)
T cd04195 176 DYALWARMLANGARFANLPEILVKA 200 (201)
T ss_pred HHHHHHHHHHcCCceecccHHHhhc
Confidence 9999999999999999999988765
No 29
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.80 E-value=2.7e-19 Score=162.71 Aligned_cols=169 Identities=21% Similarity=0.340 Sum_probs=99.9
Q ss_pred hhHHHHHHHHhcC-CcEEEEEecCCCC---hhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674 2 LDKKLEDYIERFN-GKVRLIRNTEREG---LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 77 (439)
Q Consensus 2 ~~~~l~~~~~~~~-~~i~~i~~~~n~G---~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 77 (439)
+.+.++++.++++ .+++++..+.|.| .+.|+|.|++.+++++|+|+|+|++++|+||+.+++.++.....++++..
T Consensus 44 ~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~ 123 (228)
T PF13641_consen 44 TAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPV 123 (228)
T ss_dssp GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEE
T ss_pred HHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeE
Confidence 3456778888887 3579998877666 68899999999999999999999999999999999999555556666554
Q ss_pred ecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674 78 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW 157 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~ 157 (439)
........ .. ....+......... ...........+.|+++++||++|+++||||+ +..
T Consensus 124 ~~~~~~~~-~~----------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~--~~~ 182 (228)
T PF13641_consen 124 FPDNDRNW-LT----------RLQDLFFARWHLRF--------RSGRRALGVAFLSGSGMLFRRSALEEVGGFDP--FIL 182 (228)
T ss_dssp EETTCCCE-EE----------E-TT--S-EETTTS---------TT-B----S-B--TEEEEEHHHHHHH-S--S--SSS
T ss_pred eecCCCCH-HH----------HHHHHHHhhhhhhh--------hhhhcccceeeccCcEEEEEHHHHHHhCCCCC--CCc
Confidence 33221111 00 00000000000000 00111223445679999999999999999999 333
Q ss_pred cchhhHHHHHHHHhCCcEEEecccceecccccccc
Q psy8674 158 GGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFK 192 (439)
Q Consensus 158 ~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~~ 192 (439)
+||.||++|++++|+++.+.|++.++|.....++
T Consensus 183 -~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~~~~~ 216 (228)
T PF13641_consen 183 -GEDFDLCLRLRAAGWRIVYAPDALVYHEEPSSLK 216 (228)
T ss_dssp -SHHHHHHHHHHHTT--EEEEEEEEEEE--SSSTH
T ss_pred -ccHHHHHHHHHHCCCcEEEECCcEEEEeCCCCHH
Confidence 4999999999999999999999999999665443
No 30
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.80 E-value=7.5e-19 Score=175.12 Aligned_cols=126 Identities=22% Similarity=0.290 Sum_probs=110.0
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHH
Q psy8674 267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR 346 (439)
Q Consensus 267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~ 346 (439)
..|.+|||||+|||+ ..+.+||+|+++|+|+++ |||||||||+|+|.+ .++++.++++ ++++++.++|.|++.|+
T Consensus 73 ~~p~vsViIP~yNE~-~~i~~~l~sll~q~yp~~--eIivVdDgs~D~t~~-~~~~~~~~~~-~v~vv~~~~n~Gka~Al 147 (444)
T PRK14583 73 GHPLVSILVPCFNEG-LNARETIHAALAQTYTNI--EVIAINDGSSDDTAQ-VLDALLAEDP-RLRVIHLAHNQGKAIAL 147 (444)
T ss_pred CCCcEEEEEEeCCCH-HHHHHHHHHHHcCCCCCe--EEEEEECCCCccHHH-HHHHHHHhCC-CEEEEEeCCCCCHHHHH
Confidence 458899999999999 999999999999999976 999999999999877 8888877765 79999888999999999
Q ss_pred HHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeeecCC
Q psy8674 347 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGIDYQ 397 (439)
Q Consensus 347 n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~ 397 (439)
|.|++.+++|+++++|+|+.++++++..+++.+.+++. +++++.....+.+
T Consensus 148 N~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~ 199 (444)
T PRK14583 148 RMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRS 199 (444)
T ss_pred HHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCC
Confidence 99999999999999999999999999999999976655 5555444443333
No 31
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.80 E-value=5.9e-19 Score=161.35 Aligned_cols=165 Identities=17% Similarity=0.180 Sum_probs=112.7
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCCh-hHHHHhhhhhcc--CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGL-IRTRSRGAKESR--GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI 80 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~-a~arN~G~~~A~--g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 80 (439)
+.++++.++++++++++...+|.|. ++|+|.|++.|+ +|||+|+|+|++++|+||..++..+++...+++.+.....
T Consensus 45 ~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 124 (236)
T cd06435 45 KPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYR 124 (236)
T ss_pred HHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCcccc
Confidence 4567777776668999998888886 899999999986 6999999999999999999999999743334443321111
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
.... ........|. + ....................|+++++||++|+++||||+.+. +|
T Consensus 125 ~~~~----------~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~~~~~---~e 183 (236)
T cd06435 125 DGEE----------SLFKRMCYAE----Y----KGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWDEWCI---TE 183 (236)
T ss_pred CCCc----------cHHHHHHhHH----H----HHHHHHHhccccccCceEEecceEEEEHHHHHHhCCCCCccc---cc
Confidence 1100 0000000010 0 000000000001112334578899999999999999999863 49
Q ss_pred hhHHHHHHHHhCCcEEEecccceeccccc
Q psy8674 161 NFELSFKIWMCGGSIEWVPCSRIVSLIRP 189 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~ 189 (439)
|+||++|+++.|+++.+.|++.++|....
T Consensus 184 D~dl~~r~~~~G~~~~~~~~~~~~~~~~~ 212 (236)
T cd06435 184 DSELGLRMHEAGYIGVYVAQSYGHGLIPD 212 (236)
T ss_pred hHHHHHHHHHCCcEEEEcchhhccCcCcc
Confidence 99999999999999999999887765433
No 32
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.79 E-value=1e-18 Score=170.26 Aligned_cols=122 Identities=16% Similarity=0.287 Sum_probs=104.5
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCC-cEEEEEcCCCCC---H
Q psy8674 267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREG---L 342 (439)
Q Consensus 267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~v~~i~~~~~~g---~ 342 (439)
..|.||||||+||++ +.|.+||+|+.+|+|+++ ||||+||+|+|.|.+ +++++.++++. +++++..+++.| +
T Consensus 39 ~~p~VSViiP~~nee-~~l~~~L~Sl~~q~Yp~~--EIivvdd~s~D~t~~-iv~~~~~~~p~~~i~~v~~~~~~G~~~K 114 (373)
T TIGR03472 39 AWPPVSVLKPLHGDE-PELYENLASFCRQDYPGF--QMLFGVQDPDDPALA-VVRRLRADFPDADIDLVIDARRHGPNRK 114 (373)
T ss_pred CCCCeEEEEECCCCC-hhHHHHHHHHHhcCCCCe--EEEEEeCCCCCcHHH-HHHHHHHhCCCCceEEEECCCCCCCChH
Confidence 468899999999999 999999999999999987 999999999999877 99998887763 477777666555 5
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674 343 IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID 392 (439)
Q Consensus 343 ~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 392 (439)
..+.+.+++.|++|+++|+|+|+.++|+||++++..+++++.++|++...
T Consensus 115 ~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~ 164 (373)
T TIGR03472 115 VSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYR 164 (373)
T ss_pred HHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEecccc
Confidence 55666688999999999999999999999999999998767666665443
No 33
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.79 E-value=4.6e-19 Score=157.32 Aligned_cols=135 Identities=19% Similarity=0.302 Sum_probs=106.8
Q ss_pred hhHHHHHHHHhcC-CcEEEEEecCCCCh---hHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674 2 LDKKLEDYIERFN-GKVRLIRNTEREGL---IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 77 (439)
Q Consensus 2 ~~~~l~~~~~~~~-~~i~~i~~~~n~G~---a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 77 (439)
+.+.++++.++++ .+++++.++.|.|. +.+.|.|++.|+|||++|+|+|+.++|+||+.+++.+......++++.
T Consensus 44 t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~- 122 (196)
T cd02520 44 AIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL- 122 (196)
T ss_pred HHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee-
Confidence 4567788888876 35778887777665 346789999999999999999999999999999999864444444221
Q ss_pred ecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674 78 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW 157 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~ 157 (439)
...|+++++||++|+++|||++-...
T Consensus 123 -----------------------------------------------------~~~g~~~~~r~~~~~~~ggf~~~~~~- 148 (196)
T cd02520 123 -----------------------------------------------------CAFGKSMALRREVLDAIGGFEAFADY- 148 (196)
T ss_pred -----------------------------------------------------cccCceeeeEHHHHHhccChHHHhHH-
Confidence 23578999999999999999864333
Q ss_pred cchhhHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674 158 GGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVF 191 (439)
Q Consensus 158 ~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~ 191 (439)
.+||+||++|+.++|+++.+.|.+.++|.....+
T Consensus 149 ~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~~~~~ 182 (196)
T cd02520 149 LAEDYFLGKLIWRLGYRVVLSPYVVMQPLGSTSL 182 (196)
T ss_pred HHHHHHHHHHHHHcCCeEEEcchheeccCCcccH
Confidence 3599999999999999999999987777654443
No 34
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.79 E-value=1.1e-18 Score=157.76 Aligned_cols=119 Identities=15% Similarity=0.218 Sum_probs=100.3
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC-CcEEEEE----cCCCCCHHHHHH
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIR----NTEREGLIRTRS 347 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~v~~i~----~~~~~g~~~a~n 347 (439)
||||+||++ +.|.+||+||.+|++++ .+|||||||||+|+|.+ +++++.++++ .+++++. .+.+.|.+.|+|
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~-~~eiiVvDd~S~d~t~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N 77 (219)
T cd06913 1 IILPVHNGE-QWLDECLESVLQQDFEG-TLELSVFNDASTDKSAE-IIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKN 77 (219)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCCCC-CEEEEEEeCCCCccHHH-HHHHHHHhCcccCeEEEEecccCCCCccHHHHHH
Confidence 699999999 99999999999999873 24999999999999977 8888877643 2566654 235689999999
Q ss_pred HHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeee
Q psy8674 348 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI 394 (439)
Q Consensus 348 ~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 394 (439)
.|++.|+|||++|+|+|+.++|++++.++..+.+++..++++.+...
T Consensus 78 ~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~ 124 (219)
T cd06913 78 QAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRI 124 (219)
T ss_pred HHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEec
Confidence 99999999999999999999999999999888877776666655443
No 35
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.79 E-value=1.5e-18 Score=159.06 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=93.0
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhc---CCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKR---TPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 345 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q---~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a 345 (439)
|+||||||+||++ +.|.+||+|+..| .+.++ |||||||||+|+|.+ +++++.... +++++.. ++.|.+.|
T Consensus 1 ~~vSVIi~~yN~~-~~l~~~l~sl~~~~~~~~~~~--EiIVvDdgStD~t~~-i~~~~~~~~--~i~~i~~-~~~G~~~A 73 (248)
T PRK10063 1 MLLSVITVAFRNL-EGIVKTHASLRHLAQDPGISF--EWIVVDGGSNDGTRE-FLENLNGIF--NLRFVSE-PDNGIYDA 73 (248)
T ss_pred CeEEEEEEeCCCH-HHHHHHHHHHHHHHhCCCCCE--EEEEEECcCcccHHH-HHHHhcccC--CEEEEEC-CCCCHHHH
Confidence 6899999999999 9999999999853 34555 999999999999987 888875432 4888865 46799999
Q ss_pred HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674 346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV 390 (439)
Q Consensus 346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 390 (439)
+|.|++.|+|+|++|||+|+.+.|+.++.+......++..++++.
T Consensus 74 ~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~ 118 (248)
T PRK10063 74 MNKGIAMAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGD 118 (248)
T ss_pred HHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEee
Confidence 999999999999999999999999876654444444455555544
No 36
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.79 E-value=4.3e-19 Score=161.88 Aligned_cols=170 Identities=13% Similarity=0.180 Sum_probs=111.4
Q ss_pred hHHHHHHHHhc---CCcEEEEEecCCCCh-hHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeee
Q psy8674 3 DKKLEDYIERF---NGKVRLIRNTEREGL-IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID 78 (439)
Q Consensus 3 ~~~l~~~~~~~---~~~i~~i~~~~n~G~-a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 78 (439)
.+.++++.+++ .++++++...+|.|+ ++|+|.|++.|+|+||+|+|+|++++|+||+.+...+......++.+...
T Consensus 46 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~ 125 (232)
T cd06437 46 VRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWG 125 (232)
T ss_pred HHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEeccee
Confidence 34555555432 247888887777785 78999999999999999999999999999999887775444445544332
Q ss_pred cccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCcc
Q psy8674 79 GIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWG 158 (439)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~ 158 (439)
..+... .... ....+.....+. . ... ..........+.|+++++||++|+++||||+...
T Consensus 126 ~~~~~~-~~~~-------~~~~~~~~~~~~---~---~~~---~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~~~~--- 185 (232)
T cd06437 126 HINANY-SLLT-------RVQAMSLDYHFT---I---EQV---ARSSTGLFFNFNGTAGVWRKECIEDAGGWNHDTL--- 185 (232)
T ss_pred eEcCCC-chhh-------HhhhhhHHhhhh---H---hHh---hHhhcCCeEEeccchhhhhHHHHHHhCCCCCCcc---
Confidence 221111 0000 000000000000 0 000 0001111123467778899999999999999752
Q ss_pred chhhHHHHHHHHhCCcEEEecccceecccccccc
Q psy8674 159 GENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFK 192 (439)
Q Consensus 159 ~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~~ 192 (439)
.||+||++|++.+|+++.+.|++.++|.....+.
T Consensus 186 ~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~~~ 219 (232)
T cd06437 186 TEDLDLSYRAQLKGWKFVYLDDVVVPAELPASMS 219 (232)
T ss_pred hhhHHHHHHHHHCCCeEEEeccceeeeeCCcCHH
Confidence 4999999999999999999999999988655543
No 37
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.79 E-value=9.6e-19 Score=158.12 Aligned_cols=168 Identities=16% Similarity=0.223 Sum_probs=113.6
Q ss_pred hhHHHHHHHHhcC-CcEEEEEe----cCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeee
Q psy8674 2 LDKKLEDYIERFN-GKVRLIRN----TEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV 76 (439)
Q Consensus 2 ~~~~l~~~~~~~~-~~i~~i~~----~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 76 (439)
+.+.+++|.++++ ++++++.. +.|.|++.|+|.|++.|+|+||+|||+|+.++|++|+.++..+.+++..++++.
T Consensus 41 t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 120 (219)
T cd06913 41 SAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ 120 (219)
T ss_pred HHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence 4567888887755 46777753 456899999999999999999999999999999999999998887766555544
Q ss_pred eecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCC
Q psy8674 77 IDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLV 156 (439)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~ 156 (439)
........... . . .+. ..+.......... .. ..+......+++||++|+++|||||.+..
T Consensus 121 ~~~~~~~~~~~---------~-~--~~~-----~~~~~~~~~~~~~-~~--~~~~~~~~~~~~rr~~~~~~g~f~~~~~~ 180 (219)
T cd06913 121 VRRIPEDSTER---------Y-T--RWI-----NTLTREQLLTQVY-TS--HGPTVIMPTWFCSREWFSHVGPFDEGGKG 180 (219)
T ss_pred EEecCcccchh---------h-H--HHH-----HhcCHHHHHHHHH-hh--cCCccccccceeehhHHhhcCCccchhcc
Confidence 33222111000 0 0 000 0000000000000 00 00112223468999999999999998764
Q ss_pred ccchhhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674 157 WGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 157 ~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~ 190 (439)
+ +||+||++|+.++|+++.++|...+.+..++.
T Consensus 181 ~-~eD~~l~~r~~~~g~~i~~~~~~~~~yr~~~~ 213 (219)
T cd06913 181 V-PEDLLFFYEHLRKGGGVYRVDRCLLLYRYHPG 213 (219)
T ss_pred c-hhHHHHHHHHHHcCCceEEEcceeeeeeecCC
Confidence 4 49999999999999999999998887766544
No 38
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.79 E-value=1.4e-18 Score=152.19 Aligned_cols=141 Identities=14% Similarity=0.244 Sum_probs=103.8
Q ss_pred hhHHHHHHHHhcCC-cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674 2 LDKKLEDYIERFNG-KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI 80 (439)
Q Consensus 2 ~~~~l~~~~~~~~~-~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 80 (439)
+.+.++++.+..+. .+.+++.+.+.|.++++|.|++.|+|+||+|||+|+.++|+||+.+++.+. +..++.+.....
T Consensus 40 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~--~~~~v~g~~~~~ 117 (182)
T cd06420 40 TKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAE--PGVFLSGSRVLL 117 (182)
T ss_pred HHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhC--CCcEEecceeec
Confidence 34556666664442 344455555678899999999999999999999999999999999999883 222332211111
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
.... ......|++++++|+.|.++||||+.+..+++|
T Consensus 118 ~~~~-------------------------------------------~~~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~e 154 (182)
T cd06420 118 NEKL-------------------------------------------TERGIRGCNMSFWKKDLLAVNGFDEEFTGWGGE 154 (182)
T ss_pred cccc-------------------------------------------ceeEeccceEEEEHHHHHHhCCCCcccccCCcc
Confidence 0000 002446788999999999999999999888889
Q ss_pred hhHHHHHHHHhCCcEEEe-cccceeccc
Q psy8674 161 NFELSFKIWMCGGSIEWV-PCSRIVSLI 187 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~-p~~~v~H~~ 187 (439)
|+||++|++++|+++... |.+.++|++
T Consensus 155 D~~l~~r~~~~g~~~~~~~~~~~~~h~~ 182 (182)
T cd06420 155 DSELVARLLNSGIKFRKLKFAAIVFHLW 182 (182)
T ss_pred hHHHHHHHHHcCCcEEEecccceeeecC
Confidence 999999999999665555 588889874
No 39
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.79 E-value=1.5e-18 Score=158.28 Aligned_cols=122 Identities=12% Similarity=0.099 Sum_probs=100.6
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCC-HHHHHH
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG-LIRTRS 347 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g-~~~a~n 347 (439)
|+||||||+||++.+.|++||+|++.|++++..+|||||||||+|+|.+ +++++.... .++++..+.+.| +++++|
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~n 77 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRA-LAAELGVEY--GYRYLTRPDNRHAKAGNLN 77 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHH-HHHHhhccc--CceEEEeCCCCCCcHHHHH
Confidence 5799999999986367999999999999987224999999999999877 888876543 456666666655 577899
Q ss_pred HHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCC-CEEEEeeeee
Q psy8674 348 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDG 393 (439)
Q Consensus 348 ~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~ 393 (439)
.|++.+++||++|+|+|+.++|++|+.+++.+.+++ .+++++....
T Consensus 78 ~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~ 124 (234)
T cd06421 78 NALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFF 124 (234)
T ss_pred HHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEE
Confidence 999999999999999999999999999999998844 4566554433
No 40
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.79 E-value=1.6e-18 Score=148.97 Aligned_cols=124 Identities=25% Similarity=0.412 Sum_probs=106.7
Q ss_pred HHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCccc
Q psy8674 8 DYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEF 87 (439)
Q Consensus 8 ~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~ 87 (439)
+.+++..++++++..++|.|.++|+|.|++.|++++++|+|+|+.++|+|++.+++.+.+.+...+.+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------- 111 (166)
T cd04186 42 ELLRELFPEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------- 111 (166)
T ss_pred HHHHHhCCCeEEEecCCCcChHHHhhHHHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc----------
Confidence 3344433479999999999999999999999999999999999999999999999988776544332110
Q ss_pred ccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHH
Q psy8674 88 RSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFK 167 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~R 167 (439)
..|++++++|++|+++||||+.+.. ++||.||++|
T Consensus 112 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~ 146 (166)
T cd04186 112 --------------------------------------------VSGAFLLVRREVFEEVGGFDEDFFL-YYEDVDLCLR 146 (166)
T ss_pred --------------------------------------------CceeeEeeeHHHHHHcCCCChhhhc-cccHHHHHHH
Confidence 3678999999999999999999876 4599999999
Q ss_pred HHHhCCcEEEecccceecc
Q psy8674 168 IWMCGGSIEWVPCSRIVSL 186 (439)
Q Consensus 168 l~~~G~~i~~~p~~~v~H~ 186 (439)
+.+.|+++.+.|+..++|.
T Consensus 147 ~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 147 ARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred HHHcCCeEEEccceEEEec
Confidence 9999999999999999996
No 41
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.78 E-value=1.3e-18 Score=157.72 Aligned_cols=112 Identities=26% Similarity=0.401 Sum_probs=99.8
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCC-cCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHh
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTP-AQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 351 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~-~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~ 351 (439)
||||+||++ ..|.++|+|+.+|++ .++ |||||||||+|+|.+ +++++.+..+ .++++..+.+.|++.|+|.|++
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~~--eiiiVDd~S~d~t~~-~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~ 75 (224)
T cd06442 1 IIIPTYNER-ENIPELIERLDAALKGIDY--EIIVVDDNSPDGTAE-IVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFK 75 (224)
T ss_pred CeEeccchh-hhHHHHHHHHHHhhcCCCe--EEEEEeCCCCCChHH-HHHHHHHhCC-ceEEEecCCCCChHHHHHHHHH
Confidence 699999999 999999999999987 555 999999999999977 8888877765 6888889999999999999999
Q ss_pred hcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674 352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 389 (439)
Q Consensus 352 ~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~ 389 (439)
.|+|||++|+|+|+.++|+||+.+++.+..++..++++
T Consensus 76 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 76 AARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred HcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 99999999999999999999999999976655544443
No 42
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.78 E-value=2.6e-18 Score=157.13 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=100.2
Q ss_pred EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCC-HHHHHHHHH
Q psy8674 272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG-LIRTRSRGA 350 (439)
Q Consensus 272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g-~~~a~n~g~ 350 (439)
|||||+||++.+.|.+||+|+.+|+++++ |||||||+|+|+|..+.++++.++.+.+++++...++.| ++.|+|.|+
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~--eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~ 78 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNF--EVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYAL 78 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCc--EEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHH
Confidence 79999999974689999999999999877 999999999999864477777766665788888777777 489999999
Q ss_pred hhcC--CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674 351 KESR--GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV 390 (439)
Q Consensus 351 ~~a~--~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 390 (439)
+.+. +|||+|+|+|+.++|++|..++..++++..++|.+.
T Consensus 79 ~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (236)
T cd06435 79 ERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAP 120 (236)
T ss_pred HhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecC
Confidence 9986 799999999999999999999999976555666554
No 43
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.78 E-value=2.8e-18 Score=163.77 Aligned_cols=125 Identities=21% Similarity=0.217 Sum_probs=105.5
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHhcCC------cCCcceEEEEeCCCChhhHHHHHHHHHHHc---CCcEEEEEc
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTP------AQYLEEIILVDDFSSKADLDQKLEDYIQRF---NGKVRLIRN 336 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~------~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---~~~v~~i~~ 336 (439)
...|.+|||||+||++ +.|.++|+++.++.. +...+|||||||||+|+|.+ +++++.+.. ..+++++..
T Consensus 67 ~~~~~isVVIP~yNe~-~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~-i~~~~~~~~~~~~~~i~vi~~ 144 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEE-DRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLK-VAKDFWRQNINPNIDIRLLSL 144 (333)
T ss_pred CCCeEEEEEEeeCCCH-HHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHH-HHHHHHHhcCCCCCcEEEEEc
Confidence 4678999999999999 999999999876532 22245999999999999988 888887663 135999999
Q ss_pred CCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhc---CCCEEEEeeee
Q psy8674 337 TEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS---DRKIMTVPVID 392 (439)
Q Consensus 337 ~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~---~~~~~v~~~~~ 392 (439)
+.|.|++.|+|.|++.|+||+++++|+|+..+++.+..+++.+.+ ++.++|++...
T Consensus 145 ~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~ 203 (333)
T PTZ00260 145 LRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRN 203 (333)
T ss_pred CCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeecc
Confidence 999999999999999999999999999999999999999998864 55566666543
No 44
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.77 E-value=2.1e-18 Score=154.92 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=101.1
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCC----cCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHH
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTP----AQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR 348 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~----~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~ 348 (439)
||||+||++ +.|.+||+++.+|.. .++ |||||||||+|+|.+ +++++.+.++..++++..+.|.|++.|+|.
T Consensus 1 iiip~yN~~-~~l~~~l~~l~~~~~~~~~~~~--eiivvdd~S~D~t~~-~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~ 76 (211)
T cd04188 1 VVIPAYNEE-KRLPPTLEEAVEYLEERPSFSY--EIIVVDDGSKDGTAE-VARKLARKNPALIRVLTLPKNRGKGGAVRA 76 (211)
T ss_pred CEEcccChH-HHHHHHHHHHHHHHhccCCCCE--EEEEEeCCCCCchHH-HHHHHHHhCCCcEEEEEcccCCCcHHHHHH
Confidence 699999999 999999999998864 445 999999999999987 899888776644689989999999999999
Q ss_pred HHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674 349 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 349 g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
|++.|+||||+++|+|+.+++++++.+++.+..++..++++..
T Consensus 77 g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 77 GMLAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEe
Confidence 9999999999999999999999999999997666665555443
No 45
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.77 E-value=4.6e-18 Score=161.90 Aligned_cols=118 Identities=25% Similarity=0.256 Sum_probs=100.1
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHH---hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHH
Q psy8674 268 LPKASVILVFHNEGFSSLMRTVHSII---KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIR 344 (439)
Q Consensus 268 ~p~vsiiip~~n~~~~~l~~~l~sl~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~ 344 (439)
++++|||||+||++ +.|.++++++. +|...++ |||||||||+|+|.+ +++++.+..+.++..+....|.|++.
T Consensus 5 ~~~vSVVIP~yNE~-~~i~~~l~~l~~~~~~~~~~~--EIIvVDDgS~D~T~~-il~~~~~~~~~~v~~i~~~~n~G~~~ 80 (325)
T PRK10714 5 IKKVSVVIPVYNEQ-ESLPELIRRTTAACESLGKEY--EILLIDDGSSDNSAE-MLVEAAQAPDSHIVAILLNRNYGQHS 80 (325)
T ss_pred CCeEEEEEcccCch-hhHHHHHHHHHHHHHhCCCCE--EEEEEeCCCCCcHHH-HHHHHHhhcCCcEEEEEeCCCCCHHH
Confidence 46799999999999 99999988875 3554445 999999999999988 88887665444677777889999999
Q ss_pred HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674 345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV 390 (439)
Q Consensus 345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 390 (439)
|+|.|++.|+||+++++|+|+..+|+++.++++.++++. ++|++.
T Consensus 81 A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~-DvV~~~ 125 (325)
T PRK10714 81 AIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGY-DVVGTV 125 (325)
T ss_pred HHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhC-CEEEEE
Confidence 999999999999999999999999999999999997654 445544
No 46
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.76 E-value=2.5e-18 Score=170.88 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=119.7
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCe-Eeeeeeecc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGI 80 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~-~v~~~~~~~ 80 (439)
+.+.++++.++++ +++++++++|.|.++|+|.|++.|+|||++++|+|+.++|++|+.+++.+++++.. ++.+.....
T Consensus 97 t~~~l~~~~~~~~-~v~~i~~~~n~Gka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~ 175 (420)
T PRK11204 97 TGEILDRLAAQIP-RLRVIHLAENQGKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIR 175 (420)
T ss_pred HHHHHHHHHHhCC-cEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceec
Confidence 4567778888876 89999999999999999999999999999999999999999999999999776654 343322221
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
+..+.... ...+.+.. ......... ........++|+++++||++++++||||+.+. .|
T Consensus 176 ~~~~~~~~-------~~~~~~~~-----~~~~~~~~~------~~~~~~~~~~G~~~~~rr~~l~~vgg~~~~~~---~E 234 (420)
T PRK11204 176 NRSTLLGR-------IQVGEFSS-----IIGLIKRAQ------RVYGRVFTVSGVITAFRKSALHEVGYWSTDMI---TE 234 (420)
T ss_pred cchhHHHH-------HHHHHHHH-----hhhHHHHHH------HHhCCceEecceeeeeeHHHHHHhCCCCCCcc---cc
Confidence 11110000 00000000 000000000 00112234579999999999999999999873 49
Q ss_pred hhHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674 161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPVF 191 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~ 191 (439)
|.|+++|++++|+++.+.|++.++|.....+
T Consensus 235 D~~l~~rl~~~G~~i~~~p~~~~~~~~p~t~ 265 (420)
T PRK11204 235 DIDISWKLQLRGWDIRYEPRALCWILMPETL 265 (420)
T ss_pred hHHHHHHHHHcCCeEEeccccEEEeECcccH
Confidence 9999999999999999999999998865543
No 47
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.76 E-value=9.5e-18 Score=149.00 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=99.4
Q ss_pred EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHh
Q psy8674 272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 351 (439)
Q Consensus 272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~ 351 (439)
|||||+||++ +.|.+||.|+.+|+++++ |||||||+|+|++.+ +++++... +.++...++.|.+.++|.|++
T Consensus 1 sivi~~~n~~-~~l~~~l~sl~~q~~~~~--evivvDd~s~d~~~~-~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~ 72 (202)
T cd06433 1 SIITPTYNQA-ETLEETIDSVLSQTYPNI--EYIVIDGGSTDGTVD-IIKKYEDK----ITYWISEPDKGIYDAMNKGIA 72 (202)
T ss_pred CEEEeccchH-HHHHHHHHHHHhCCCCCc--eEEEEeCCCCccHHH-HHHHhHhh----cEEEEecCCcCHHHHHHHHHH
Confidence 6999999999 999999999999999876 999999999999877 88877543 344456788999999999999
Q ss_pred hcCCCEEEEEcCCCccCCCChHHHHHhhhc-CCCEEEEeeeeeecCC
Q psy8674 352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYS-DRKIMTVPVIDGIDYQ 397 (439)
Q Consensus 352 ~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~ 397 (439)
.|+++|++++|+|+.+.++++..++..+.. +...++++.....+.+
T Consensus 73 ~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 119 (202)
T cd06433 73 LATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDEN 119 (202)
T ss_pred HcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCC
Confidence 999999999999999999999999966644 4456666665544433
No 48
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.76 E-value=6.8e-18 Score=150.51 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=107.4
Q ss_pred hHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhc---cCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeec
Q psy8674 3 DKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKES---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG 79 (439)
Q Consensus 3 ~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A---~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~ 79 (439)
.+.++++.+..+ ++++.+++|.|.+.|+|.|+..| ++||++|+|+|++++|+||+.+++.+.+....++.+....
T Consensus 41 ~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 118 (202)
T cd04185 41 AEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLD 118 (202)
T ss_pred HHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEc
Confidence 334444443332 89999999999999999999876 6999999999999999999999999984444444332211
Q ss_pred ccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccc
Q psy8674 80 IDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGG 159 (439)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ 159 (439)
.+. .+++++++|++|+++|+|++.+++++
T Consensus 119 ~~~--------------------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~- 147 (202)
T cd04185 119 PDG--------------------------------------------------SFVGVLISRRVVEKIGLPDKEFFIWG- 147 (202)
T ss_pred CCC--------------------------------------------------ceEEEEEeHHHHHHhCCCChhhhccc-
Confidence 000 23568999999999999999988765
Q ss_pred hhhHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674 160 ENFELSFKIWMCGGSIEWVPCSRIVSLIRPVF 191 (439)
Q Consensus 160 ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~ 191 (439)
||+||++|++++|+++ +.|.+.++|......
T Consensus 148 eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~~ 178 (202)
T cd04185 148 DDTEYTLRASKAGPGI-YVPDAVVVHKTAINK 178 (202)
T ss_pred hHHHHHHHHHHcCCcE-EecceEEEEcccccc
Confidence 9999999999999999 999999999975543
No 49
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.76 E-value=6.7e-18 Score=155.42 Aligned_cols=169 Identities=18% Similarity=0.209 Sum_probs=117.3
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 81 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 81 (439)
+.+.++++.++.+ .++++.++ +.|.+.|+|.|++.|+|||++|+|+|+.++|+||+.+++.+.+.+..++.+......
T Consensus 45 ~~~~~~~~~~~~~-~v~~i~~~-~~~~~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~ 122 (249)
T cd02525 45 TREIVQEYAAKDP-RIRLIDNP-KRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIG 122 (249)
T ss_pred HHHHHHHHHhcCC-eEEEEeCC-CCCchHHHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCC
Confidence 4566777766664 89999854 568999999999999999999999999999999999999888766666554433222
Q ss_pred CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN 161 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED 161 (439)
...... .+.+...... .... . ..............|++++++|++|+++|+||+.+. .+||
T Consensus 123 ~~~~~~------------~~~~~~~~~~-~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~eD 183 (249)
T cd02525 123 ESKFQK------------AIAVAQSSPL-GSGG--S--AYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDESLV--RNED 183 (249)
T ss_pred CChHHH------------HHHHHhhchh-ccCC--c--cccccccccccccccccceEEHHHHHHhCCCCcccC--ccch
Confidence 111100 0000000000 0000 0 000000000224468889999999999999999975 3599
Q ss_pred hHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674 162 FELSFKIWMCGGSIEWVPCSRIVSLIRPVF 191 (439)
Q Consensus 162 ~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~ 191 (439)
.||++|+.++|+++.+.|++.+.|..+..+
T Consensus 184 ~~l~~r~~~~G~~~~~~~~~~~~~~~~~s~ 213 (249)
T cd02525 184 AELNYRLRKAGYKIWLSPDIRVYYYPRSTL 213 (249)
T ss_pred hHHHHHHHHcCcEEEEcCCeEEEEcCCCCH
Confidence 999999999999999999999999876544
No 50
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.74 E-value=9.9e-18 Score=157.86 Aligned_cols=122 Identities=21% Similarity=0.270 Sum_probs=97.2
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEE-EcCCCCCHHHH
Q psy8674 267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLI-RNTEREGLIRT 345 (439)
Q Consensus 267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i-~~~~~~g~~~a 345 (439)
..|++|||||+||++ +.|.+||+++.+|.......|||||||||+|+|.+ +++++....-....++ ..+.|.|++.|
T Consensus 29 ~~~~vSVVIPayNee-~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~-ia~~~~~~v~~~~~~~~~~~~n~Gkg~A 106 (306)
T PRK13915 29 AGRTVSVVLPALNEE-ETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAE-RAAAAGARVVSREEILPELPPRPGKGEA 106 (306)
T ss_pred CCCCEEEEEecCCcH-HHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHH-HHHHhcchhhcchhhhhccccCCCHHHH
Confidence 467899999999999 99999999999887522234999999999999987 7776533211111122 23678999999
Q ss_pred HHHHHhhcCCCEEEEEcCCCc-cCCCChHHHHHhhh-cCCCEEEEee
Q psy8674 346 RSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIY-SDRKIMTVPV 390 (439)
Q Consensus 346 ~n~g~~~a~~d~i~~ld~D~~-~~~~~l~~l~~~~~-~~~~~~v~~~ 390 (439)
+|.|+..++||+++|+|+|+. ++|+||..+++.+. ++...+|.+.
T Consensus 107 ~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 107 LWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred HHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 999999999999999999997 89999999999997 4455666654
No 51
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.74 E-value=1.8e-17 Score=152.53 Aligned_cols=121 Identities=22% Similarity=0.314 Sum_probs=103.8
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHH
Q psy8674 270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 349 (439)
Q Consensus 270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g 349 (439)
++|||||+||++ +.|.++|+|+.+|+++...+|||||||+|+|+|.+ .++.+.+..+ .++++..+ +.|.+.|+|.|
T Consensus 1 ~~sIiip~~n~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~-~~~~~~~~~~-~v~~i~~~-~~~~~~a~N~g 76 (249)
T cd02525 1 FVSIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTRE-IVQEYAAKDP-RIRLIDNP-KRIQSAGLNIG 76 (249)
T ss_pred CEEEEEEcCCch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHH-HHHHHHhcCC-eEEEEeCC-CCCchHHHHHH
Confidence 489999999999 99999999999999853344999999999999877 8888876644 68888654 56889999999
Q ss_pred HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeee
Q psy8674 350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI 394 (439)
Q Consensus 350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 394 (439)
++.+++||++|+|+|+.++|+||+.+++.+.+++..++++.....
T Consensus 77 ~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~ 121 (249)
T cd02525 77 IRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETI 121 (249)
T ss_pred HHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecC
Confidence 999999999999999999999999999998887777666555433
No 52
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.74 E-value=1.6e-17 Score=150.85 Aligned_cols=117 Identities=26% Similarity=0.363 Sum_probs=98.5
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc-CCcEEEEEcC--CCCCHHHHHHHH
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF-NGKVRLIRNT--EREGLIRTRSRG 349 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~v~~i~~~--~~~g~~~a~n~g 349 (439)
||||+||+. +.|.+||+|++.|++++..+|||||||||+|+|.+ +++ +.... ..+++++..+ .+.|++.++|.|
T Consensus 1 viip~~n~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~-~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g 77 (229)
T cd04192 1 VVIAARNEA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQ-ILE-FAAAKPNFQLKILNNSRVSISGKKNALTTA 77 (229)
T ss_pred CEEEecCcH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHH-HHH-HHHhCCCcceEEeeccCcccchhHHHHHHH
Confidence 699999999 99999999999999987234999999999999877 666 33222 2367777766 478899999999
Q ss_pred HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674 350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID 392 (439)
Q Consensus 350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 392 (439)
++.+++||++|+|+|+.+.|+||+.+++.+.+++..++++...
T Consensus 78 ~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 120 (229)
T cd04192 78 IKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVI 120 (229)
T ss_pred HHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeee
Confidence 9999999999999999999999999999988877766665443
No 53
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.74 E-value=1.5e-17 Score=146.01 Aligned_cols=115 Identities=24% Similarity=0.310 Sum_probs=100.2
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 352 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~ 352 (439)
||||+||++ +.|.+||+|+.+|.++...+|||||||+|+|++.+ +++++..+.+ .++++..+++.|++.++|.|++.
T Consensus 1 iii~~~n~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~-~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~ 77 (185)
T cd04179 1 VVIPAYNEE-ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAE-IARELAARVP-RVRVIRLSRNFGKGAAVRAGFKA 77 (185)
T ss_pred CeecccChH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHH-HHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHH
Confidence 689999999 99999999999998732234999999999999877 8888887765 67889899999999999999999
Q ss_pred cCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674 353 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV 390 (439)
Q Consensus 353 a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 390 (439)
|+|||++|+|+|+.+.|+||++++..+...+..++++.
T Consensus 78 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 78 ARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 99999999999999999999999999666555544443
No 54
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.74 E-value=1.3e-17 Score=148.62 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=102.4
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 352 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~ 352 (439)
||||+||++ +.|.+||+|+.+|+++.+ |||||||||+|.|.+ +++++.... +++++..++|.|.+.++|.|++.
T Consensus 1 viI~~~n~~-~~l~~~l~sl~~q~~~~~--eiiivD~~s~d~t~~-~~~~~~~~~--~i~~~~~~~n~g~~~~~n~~~~~ 74 (202)
T cd04185 1 AVVVTYNRL-DLLKECLDALLAQTRPPD--HIIVIDNASTDGTAE-WLTSLGDLD--NIVYLRLPENLGGAGGFYEGVRR 74 (202)
T ss_pred CEEEeeCCH-HHHHHHHHHHHhccCCCc--eEEEEECCCCcchHH-HHHHhcCCC--ceEEEECccccchhhHHHHHHHH
Confidence 699999999 999999999999998876 999999999999877 888775543 37889899999999999999987
Q ss_pred c---CCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeec
Q psy8674 353 S---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 395 (439)
Q Consensus 353 a---~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 395 (439)
+ ++||++|+|+|+.++++|++.+++.+.++..+++.|.+...+
T Consensus 75 a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 120 (202)
T cd04185 75 AYELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPD 120 (202)
T ss_pred HhccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCC
Confidence 5 699999999999999999999999998666777777665544
No 55
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.74 E-value=2.1e-17 Score=142.94 Aligned_cols=121 Identities=24% Similarity=0.358 Sum_probs=102.5
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 352 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~ 352 (439)
||||+||++ +.|.+||+|+++|+++++ |||||||+|+|.|.+ .+.++....+..+.++..+++.|++.++|.|++.
T Consensus 1 Viip~~n~~-~~l~~~l~sl~~q~~~~~--~iivvdd~s~d~t~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~ 76 (180)
T cd06423 1 IIVPAYNEE-AVIERTIESLLALDYPKL--EVIVVDDGSTDDTLE-ILEELAALYIRRVLVVRDKENGGKAGALNAGLRH 76 (180)
T ss_pred CeecccChH-HHHHHHHHHHHhCCCCce--EEEEEeCCCccchHH-HHHHHhccccceEEEEEecccCCchHHHHHHHHh
Confidence 689999999 999999999999998766 999999999999877 7777665543357778888999999999999999
Q ss_pred cCCCEEEEEcCCCccCCCChHHHHHhhhcCC-CEEEEeeeeeecCC
Q psy8674 353 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQ 397 (439)
Q Consensus 353 a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~ 397 (439)
++++|++|+|+|+.+.+++|+.++..+...+ ..++++.....+..
T Consensus 77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (180)
T cd06423 77 AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGS 122 (180)
T ss_pred cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCc
Confidence 9999999999999999999999966665544 46666666555444
No 56
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.74 E-value=8.3e-18 Score=167.62 Aligned_cols=168 Identities=20% Similarity=0.220 Sum_probs=119.1
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCe-Eeeeeeecc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGI 80 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~-~v~~~~~~~ 80 (439)
+.+.++++.++++ ++++++.++|.|.++|+|.|++.|+|||++++|+|++++|++|+.+++.+.+++.. ++.+.....
T Consensus 118 t~~~~~~~~~~~~-~v~vv~~~~n~Gka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~ 196 (444)
T PRK14583 118 TAQVLDALLAEDP-RLRVIHLAHNQGKAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIR 196 (444)
T ss_pred HHHHHHHHHHhCC-CEEEEEeCCCCCHHHHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceec
Confidence 4567778888886 89999999999999999999999999999999999999999999999999876654 333222221
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
...+.... ...+.+... + ...... .. .......++|+++++||++++++||||++.. .|
T Consensus 197 ~~~~~~~~-------~~~~e~~~~--~---~~~~~~---~~---~~g~~~~~sG~~~~~rr~al~~vGg~~~~~i---~E 255 (444)
T PRK14583 197 TRSTLIGR-------VQVGEFSSI--I---GLIKRT---QR---VYGQVFTVSGVVAAFRRRALADVGYWSPDMI---TE 255 (444)
T ss_pred CCCcchhh-------HHHHHHHHH--H---HHHHHH---HH---HhCCceEecCceeEEEHHHHHHcCCCCCCcc---cc
Confidence 11110000 000000000 0 000000 00 0012234579999999999999999999863 49
Q ss_pred hhHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674 161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPVF 191 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~ 191 (439)
|.|+++|++.+||++.+.|++.+++.....+
T Consensus 256 D~dl~~rl~~~G~~i~~~p~a~~~~~~p~t~ 286 (444)
T PRK14583 256 DIDISWKLQLKHWSVFFEPRGLCWILMPETL 286 (444)
T ss_pred cHHHHHHHHHcCCeEEEeeccEEeeeCCCCH
Confidence 9999999999999999999999988755443
No 57
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.73 E-value=1.3e-17 Score=151.50 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=106.4
Q ss_pred CcEEEEEec--CCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccC
Q psy8674 15 GKVRLIRNT--EREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYE 92 (439)
Q Consensus 15 ~~i~~i~~~--~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 92 (439)
++++++..+ .|.|.+.|+|.|++.|+|+||+|+|+|+.+.|+||+.+++.+.+++..++++.........+...
T Consensus 55 ~~v~~~~~~~~~~~g~~~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~---- 130 (229)
T cd04192 55 FQLKILNNSRVSISGKKNALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAK---- 130 (229)
T ss_pred cceEEeeccCcccchhHHHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHH----
Confidence 589999876 58899999999999999999999999999999999999999887766665544333211110000
Q ss_pred CCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhC
Q psy8674 93 PDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCG 172 (439)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G 172 (439)
. ..+.+.... ..... ...........|+++++||++|+++||||+.++.. .||.|+++|+.++|
T Consensus 131 ----~-~~~~~~~~~-------~~~~~---~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~~~~~-~eD~~~~~~~~~~g 194 (229)
T cd04192 131 ----F-QRLDWLSLL-------GLIAG---SFGLGKPFMCNGANMAYRKEAFFEVGGFEGNDHIA-SGDDELLLAKVASK 194 (229)
T ss_pred ----H-HHHHHHHHH-------HHHhh---HHHhcCccccccceEEEEHHHHHHhcCCccccccc-cCCHHHHHHHHHhC
Confidence 0 000000000 00000 00001112346889999999999999999987654 59999999999999
Q ss_pred C-cEEEe--cccceecccccc
Q psy8674 173 G-SIEWV--PCSRIVSLIRPV 190 (439)
Q Consensus 173 ~-~i~~~--p~~~v~H~~~~~ 190 (439)
+ ++.+. |.+.++|.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~ 215 (229)
T cd04192 195 YPKVAYLKNPEALVTTQPVTS 215 (229)
T ss_pred CCCEEEeeCcchheecCCchh
Confidence 9 88876 556655554443
No 58
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.73 E-value=1.5e-17 Score=151.79 Aligned_cols=166 Identities=12% Similarity=0.112 Sum_probs=111.5
Q ss_pred hHHHHHHHHhcCCcEEEEEecCCCCh-hHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC-eEeeeeeecc
Q psy8674 3 DKKLEDYIERFNGKVRLIRNTEREGL-IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGI 80 (439)
Q Consensus 3 ~~~l~~~~~~~~~~i~~i~~~~n~G~-a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~ 80 (439)
.+.++++..++ +++++..+.|.|. ++++|.|++.|+||||+|+|+|+.++|+||+.++..+.+++. +++.+.....
T Consensus 48 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~ 125 (234)
T cd06421 48 RALAAELGVEY--GYRYLTRPDNRHAKAGNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFY 125 (234)
T ss_pred HHHHHHhhccc--CceEEEeCCCCCCcHHHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEe
Confidence 34455554443 4677877777764 667899999999999999999999999999999999987554 4454433222
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
...... .....+.+.. ..+....... ........+.|+++++||++|+++|||++.+. +|
T Consensus 126 ~~~~~~---------~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~g~~~~~r~~~~~~ig~~~~~~~---~e 185 (234)
T cd06421 126 NPDPFD---------WLADGAPNEQ----ELFYGVIQPG----RDRWGAAFCCGSGAVVRREALDEIGGFPTDSV---TE 185 (234)
T ss_pred cCCcch---------hHHHHHHHHH----HHHHHHHHHH----HhhcCCceecCceeeEeHHHHHHhCCCCccce---ec
Confidence 111100 0000000000 0000000000 00122446678999999999999999998763 49
Q ss_pred hhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674 161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~ 190 (439)
|++|++|+.++|+++.+.|++.++|.....
T Consensus 186 D~~l~~r~~~~g~~i~~~~~~~~~~~~~~~ 215 (234)
T cd06421 186 DLATSLRLHAKGWRSVYVPEPLAAGLAPET 215 (234)
T ss_pred cHHHHHHHHHcCceEEEecCccccccCCcc
Confidence 999999999999999999999998875444
No 59
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.73 E-value=3.1e-17 Score=149.82 Aligned_cols=119 Identities=21% Similarity=0.288 Sum_probs=99.9
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHH
Q psy8674 270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 349 (439)
Q Consensus 270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g 349 (439)
+||||||+||++.+.|.+||+|+.+|+ .+ |||||||+|+|++.+ .+.... .. ..+.++ ..++.|++.++|.|
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~--~~--eiivvdd~s~d~~~~-~l~~~~-~~-~~~~v~-~~~~~g~~~a~n~g 72 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK--PL--EIIVVTDGDDEPYLS-ILSQTV-KY-GGIFVI-TVPHPGKRRALAEG 72 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC--CC--EEEEEeCCCChHHHH-HHHhhc-cC-CcEEEE-ecCCCChHHHHHHH
Confidence 489999999997689999999999998 35 999999999999876 553322 22 246665 56788999999999
Q ss_pred HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecC
Q psy8674 350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY 396 (439)
Q Consensus 350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~ 396 (439)
++.+++||++|+|+|+.++++||+++++.+.++..+++++.+...+.
T Consensus 73 ~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~ 119 (235)
T cd06434 73 IRHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRP 119 (235)
T ss_pred HHHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecC
Confidence 99999999999999999999999999999996666777777665554
No 60
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.73 E-value=3.3e-17 Score=144.71 Aligned_cols=117 Identities=19% Similarity=0.255 Sum_probs=96.3
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC---CCCCHHHHHHHH
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT---EREGLIRTRSRG 349 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~---~~~g~~~a~n~g 349 (439)
||||+||++ +.|.+||+||.+|+ +.+ |||||||+|+|.|.+ +++ +... ..++++++.. .+.|++.|+|.|
T Consensus 1 ViIp~~Ne~-~~l~~~l~sl~~~~-~~~--eIivvdd~S~D~t~~-~~~-~~~~-~~~v~~i~~~~~~~~~Gk~~aln~g 73 (191)
T cd06436 1 VLVPCLNEE-AVIQRTLASLLRNK-PNF--LVLVIDDASDDDTAG-IVR-LAIT-DSRVHLLRRHLPNARTGKGDALNAA 73 (191)
T ss_pred CEEeccccH-HHHHHHHHHHHhCC-CCe--EEEEEECCCCcCHHH-HHh-heec-CCcEEEEeccCCcCCCCHHHHHHHH
Confidence 699999999 99999999999998 655 999999999999987 766 3222 2368888653 568999999999
Q ss_pred HhhcC-----------CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecC
Q psy8674 350 AKESR-----------GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY 396 (439)
Q Consensus 350 ~~~a~-----------~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~ 396 (439)
++.++ +++++++|+|+.++|++|+.+...+.++...++.+.+...+.
T Consensus 74 ~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~ 131 (191)
T cd06436 74 YDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNR 131 (191)
T ss_pred HHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecC
Confidence 99875 379999999999999999998888876655666666655554
No 61
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.73 E-value=7.8e-18 Score=154.47 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=99.7
Q ss_pred cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcC-CCe-EeeeeeecccCCCcccccccCC
Q psy8674 16 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD-RKI-MTVPVIDGIDYQTWEFRSVYEP 93 (439)
Q Consensus 16 ~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~-~~~-~v~~~~~~~~~~~~~~~~~~~~ 93 (439)
+|+++.+.+|.|.++|+|.|++.|+||||+|+|+|+.++|+||.++++.+.++ +.. ++++.+........ ...
T Consensus 60 ~i~~~~~~~~~G~~~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~---- 134 (241)
T cd06427 60 RVVVVPPSQPRTKPKACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNAREN-WLT---- 134 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCcc-HHH----
Confidence 56666777889999999999999999999999999999999999999999864 333 33333222111100 000
Q ss_pred CCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCC
Q psy8674 94 DHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGG 173 (439)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~ 173 (439)
......+...+ ....... ........+.|+|+++||++|+++||||+.. + .||.||++|+..+|+
T Consensus 135 ---~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~g~~~~~rr~~~~~vgg~~~~~--~-~eD~~l~~rl~~~G~ 199 (241)
T cd06427 135 ---RMFALEYAAWF------DYLLPGL---ARLGLPIPLGGTSNHFRTDVLRELGGWDPFN--V-TEDADLGLRLARAGY 199 (241)
T ss_pred ---HHHHHHHHHHH------HHHHHHH---HhcCCeeecCCchHHhhHHHHHHcCCCCccc--c-hhhHHHHHHHHHCCc
Confidence 00000000000 0000000 0000111346788999999999999999843 3 499999999999999
Q ss_pred cEEEecccceeccc
Q psy8674 174 SIEWVPCSRIVSLI 187 (439)
Q Consensus 174 ~i~~~p~~~v~H~~ 187 (439)
++.++|...+.|.+
T Consensus 200 r~~~~~~~~~~~~~ 213 (241)
T cd06427 200 RTGVLNSTTLEEAN 213 (241)
T ss_pred eEEEecccccccCc
Confidence 99999886655543
No 62
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.72 E-value=4.5e-17 Score=142.53 Aligned_cols=113 Identities=24% Similarity=0.294 Sum_probs=97.1
Q ss_pred EEEEecCCChhHHHHHHHHHHhcC---CcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHH
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRT---PAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 349 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~---~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g 349 (439)
||||+||++ +.|.++|+++..+. +..+ |||||||||+|+|.+ +++.+....+ +++++...+|.|.+.|+|.|
T Consensus 1 viIp~~n~~-~~l~~~l~sl~~~~~~~~~~~--eiivvdd~s~d~t~~-~~~~~~~~~~-~i~~i~~~~n~G~~~a~n~g 75 (181)
T cd04187 1 IVVPVYNEE-ENLPELYERLKAVLESLGYDY--EIIFVDDGSTDRTLE-ILRELAARDP-RVKVIRLSRNFGQQAALLAG 75 (181)
T ss_pred CEEeecCch-hhHHHHHHHHHHHHHhcCCCe--EEEEEeCCCCccHHH-HHHHHHhhCC-CEEEEEecCCCCcHHHHHHH
Confidence 699999999 99999999887654 3445 999999999999877 8888877665 79999889999999999999
Q ss_pred HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674 350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
++.++++|++++|+|+.++++||+.+++.+..+. .+|.+..
T Consensus 76 ~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~v~g~~ 116 (181)
T cd04187 76 LDHARGDAVITMDADLQDPPELIPEMLAKWEEGY-DVVYGVR 116 (181)
T ss_pred HHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCCC-cEEEEEe
Confidence 9999999999999999999999999999965544 4444443
No 63
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.72 E-value=6.6e-17 Score=141.77 Aligned_cols=109 Identities=21% Similarity=0.207 Sum_probs=90.7
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 352 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~ 352 (439)
||||+||++ +.|.+||+++.+|+++...+|||||||||+|+|.+ +++++ ...+.+...+.+.|++.|+|.|+..
T Consensus 1 VvIp~~ne~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~-~~~~~----~~~~~~~~~~~~~gk~~aln~g~~~ 74 (183)
T cd06438 1 ILIPAHNEE-AVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQ-VARAA----GATVLERHDPERRGKGYALDFGFRH 74 (183)
T ss_pred CEEeccchH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHH-HHHHc----CCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 699999999 99999999999999864345999999999999876 66543 2234444456788999999999987
Q ss_pred c-----CCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEE
Q psy8674 353 S-----RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMT 387 (439)
Q Consensus 353 a-----~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v 387 (439)
+ ++|+++++|+|+.++|+||..++..+.++...+.
T Consensus 75 a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~ 114 (183)
T cd06438 75 LLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQ 114 (183)
T ss_pred HHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeE
Confidence 6 4999999999999999999999999987654433
No 64
>KOG2978|consensus
Probab=99.71 E-value=9.1e-17 Score=132.50 Aligned_cols=147 Identities=21% Similarity=0.247 Sum_probs=115.7
Q ss_pred CCceEEEEEecCCChhHHHHHH---HHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC-CcEEEEEcCCCCCHH
Q psy8674 268 LPKASVILVFHNEGFSSLMRTV---HSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIRNTEREGLI 343 (439)
Q Consensus 268 ~p~vsiiip~~n~~~~~l~~~l---~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~v~~i~~~~~~g~~ 343 (439)
+++.|||+|+|||. +.|.-++ .....+...+ +|||||||+|.|+|.+ .++.+++.+. .++.+.......|.+
T Consensus 2 ~~kYsvilPtYnEk-~Nlpi~~~li~~~~~e~~~~--~eiIivDD~SpDGt~~-~a~~L~k~yg~d~i~l~pR~~klGLg 77 (238)
T KOG2978|consen 2 SIKYSVILPTYNEK-ENLPIITRLIAKYMSEEGKK--YEIIIVDDASPDGTQE-VAKALQKIYGEDNILLKPRTKKLGLG 77 (238)
T ss_pred CcceeEEeccccCC-CCCeeeHHHHHhhhhhhcCc--eEEEEEeCCCCCccHH-HHHHHHHHhCCCcEEEEeccCcccch
Confidence 35789999999998 6665333 3333333334 4999999999999988 8888876654 478888888889999
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCCCCCceeeeeccceeEe
Q psy8674 344 RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKE 423 (439)
Q Consensus 344 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~ 423 (439)
.|.-.|++.|+|+|+++||+|...+|.++.++++...++..++|.+. .|.++ -|.+-|.|..+.
T Consensus 78 tAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GT---------RYa~~-------ggV~gW~mkRk~ 141 (238)
T KOG2978|consen 78 TAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGT---------RYAGG-------GGVYGWDMKRKI 141 (238)
T ss_pred HHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeee---------eEcCC-------CceecchhhHHH
Confidence 99999999999999999999999999999999999999887777664 56533 155668888776
Q ss_pred ecCCHHHHhhc
Q psy8674 424 NELPEREAKKR 434 (439)
Q Consensus 424 ~~~~~~~~~~~ 434 (439)
...-++-+.+.
T Consensus 142 IS~gAn~la~~ 152 (238)
T KOG2978|consen 142 ISRGANFLARI 152 (238)
T ss_pred HhhhhHHHHHH
Confidence 66666655543
No 65
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.71 E-value=8.4e-17 Score=140.83 Aligned_cols=114 Identities=15% Similarity=0.337 Sum_probs=94.0
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEE-EEEcCCCCCHHHHHHHHHh
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR-LIRNTEREGLIRTRSRGAK 351 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~-~i~~~~~~g~~~a~n~g~~ 351 (439)
||||+||+. +.|.+||+|+.+|+++++ |||||||+|+|.|.+ +++++....+.++. +++.+.+.|.+.++|.|++
T Consensus 1 ivip~~n~~-~~l~~~l~sl~~q~~~~~--eiivvdd~s~d~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~ 76 (182)
T cd06420 1 LIITTYNRP-EALELVLKSVLNQSILPF--EVIIADDGSTEETKE-LIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIA 76 (182)
T ss_pred CEEeecCCh-HHHHHHHHHHHhccCCCC--EEEEEeCCCchhHHH-HHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHH
Confidence 699999999 999999999999998877 999999999999876 88887664433333 4444455678999999999
Q ss_pred hcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674 352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 352 ~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
.++|+|++|+|+|+.++++||+.+++.+ .....++++.+
T Consensus 77 ~a~g~~i~~lD~D~~~~~~~l~~~~~~~-~~~~~v~g~~~ 115 (182)
T cd06420 77 AAKGDYLIFIDGDCIPHPDFIADHIELA-EPGVFLSGSRV 115 (182)
T ss_pred HhcCCEEEEEcCCcccCHHHHHHHHHHh-CCCcEEeccee
Confidence 9999999999999999999999999988 33344444443
No 66
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.71 E-value=1.5e-16 Score=141.19 Aligned_cols=155 Identities=14% Similarity=0.200 Sum_probs=108.0
Q ss_pred HHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCC-CeEeeeeeecccCCCcc
Q psy8674 8 DYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQTWE 86 (439)
Q Consensus 8 ~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~~~~ 86 (439)
++++++..++.++.+++|.|++.|+|.|++.|+|+||+|+|+|+.+.++++..++..+...+ ..++.+...........
T Consensus 43 ~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~ 122 (202)
T cd06433 43 DIIKKYEDKITYWISEPDKGIYDAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV 122 (202)
T ss_pred HHHHHhHhhcEEEEecCCcCHHHHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc
Confidence 33444332344555689999999999999999999999999999999999999996665554 44554443332221110
Q ss_pred cccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHH
Q psy8674 87 FRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSF 166 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~ 166 (439)
... . . . .... .........+.++++++||++|+++|+|++.+.. +||.||++
T Consensus 123 ~~~-----------~-~----~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~D~~~~~ 174 (202)
T cd06433 123 IGR-----------R-R----P-PPFL---------DKFLLYGMPICHQATFFRRSLFEKYGGFDESYRI--AADYDLLL 174 (202)
T ss_pred ccC-----------C-C----C-cchh---------hhHHhhcCcccCcceEEEHHHHHHhCCCchhhCc--hhhHHHHH
Confidence 000 0 0 0 0000 0001112244567889999999999999999853 48999999
Q ss_pred HHHHhCCcEEEecccceecccccc
Q psy8674 167 KIWMCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 167 Rl~~~G~~i~~~p~~~v~H~~~~~ 190 (439)
|+++.|+++.+.|...++|..+..
T Consensus 175 r~~~~g~~~~~~~~~~~~~~~~~~ 198 (202)
T cd06433 175 RLLLAGKIFKYLPEVLAAFRLGGV 198 (202)
T ss_pred HHHHcCCceEecchhhhhheecCC
Confidence 999999999999999998887654
No 67
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.71 E-value=1.4e-17 Score=151.49 Aligned_cols=125 Identities=26% Similarity=0.378 Sum_probs=92.3
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCC-cEEEEEcCCCCC---HHH
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREG---LIR 344 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~v~~i~~~~~~g---~~~ 344 (439)
|.||||||+||+. +.|.++|+|+++|+++.+ ||+||||+|++++.+ .++++.+.++. +++++..+.+.| ++.
T Consensus 1 P~v~Vvip~~~~~-~~l~~~l~sl~~~~~~~~--~v~vvd~~~~~~~~~-~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~ 76 (228)
T PF13641_consen 1 PRVSVVIPAYNED-DVLRRCLESLLAQDYPRL--EVVVVDDGSDDETAE-ILRALAARYPRVRVRVIRRPRNPGPGGKAR 76 (228)
T ss_dssp --EEEE--BSS-H-HHHHHHHHHHTTSHHHTE--EEEEEEE-SSS-GCT-THHHHHHTTGG-GEEEEE----HHHHHHHH
T ss_pred CEEEEEEEecCCH-HHHHHHHHHHHcCCCCCe--EEEEEECCCChHHHH-HHHHHHHHcCCCceEEeecCCCCCcchHHH
Confidence 6799999999999 999999999999998766 999999999999876 88888877764 578887777654 788
Q ss_pred HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCC
Q psy8674 345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQ 397 (439)
Q Consensus 345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~ 397 (439)
++|.|++.+++|+|+|+|+|+.++|+||..+++.+.++...+|.+.+...+.+
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~ 129 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR 129 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC
Confidence 99999999999999999999999999999999999777777777666444433
No 68
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.71 E-value=6.4e-17 Score=146.56 Aligned_cols=165 Identities=20% Similarity=0.161 Sum_probs=113.1
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 81 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 81 (439)
+.+.++++.++.+ +++++.+++|.|.++|+|.|++.|+|+||+|||+|+.++|+||+.+++.+..++..++.+......
T Consensus 41 t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~ 119 (224)
T cd06442 41 TAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEG 119 (224)
T ss_pred hHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecC
Confidence 4566777877776 889999999999999999999999999999999999999999999999976655555544322111
Q ss_pred CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhC-CCCCCCCCccch
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG-GYDPGLLVWGGE 160 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG-gfde~~~~~~~E 160 (439)
. .. ..|............ ...... .........|+++++||++|+++| ++++..+ .+
T Consensus 120 ~-~~---------------~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~r~~~~~ig~~~~~~~~---~~ 177 (224)
T cd06442 120 G-GV---------------EGWGLKRKLISRGAN-LLARLL--LGRKVSDPTSGFRAYRREVLEKLIDSLVSKGY---KF 177 (224)
T ss_pred C-cc---------------CCCcHHHHHHHHHHH-HHHHHH--cCCCCCCCCCccchhhHHHHHHHhhhccCCCc---EE
Confidence 0 00 001100000000000 000000 011233456888999999999998 5554332 26
Q ss_pred hhHHHHHHHHhCCcEEEecccceeccccc
Q psy8674 161 NFELSFKIWMCGGSIEWVPCSRIVSLIRP 189 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~ 189 (439)
|+||++|++++|+++.+.|.+.+.|....
T Consensus 178 ~~~l~~~~~~~g~~i~~~p~~~~~~~~g~ 206 (224)
T cd06442 178 QLELLVRARRLGYRIVEVPITFVDREHGE 206 (224)
T ss_pred eHHHHHHHHHcCCeEEEeCeEEeccCCCc
Confidence 89999999999999999999888776543
No 69
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.70 E-value=1.5e-16 Score=144.75 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=94.6
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHH
Q psy8674 270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 349 (439)
Q Consensus 270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g 349 (439)
+||||||+||++ +.|.+||+|+..|+ . |||||||||+|+|.+ +++++ +++++.. .+.|.+.++|.|
T Consensus 1 ~isvii~~~Ne~-~~l~~~l~sl~~~~---~--eiivvD~gStD~t~~-i~~~~------~~~v~~~-~~~g~~~~~n~~ 66 (229)
T cd02511 1 TLSVVIITKNEE-RNIERCLESVKWAV---D--EIIVVDSGSTDRTVE-IAKEY------GAKVYQR-WWDGFGAQRNFA 66 (229)
T ss_pred CEEEEEEeCCcH-HHHHHHHHHHhccc---C--EEEEEeCCCCccHHH-HHHHc------CCEEEEC-CCCChHHHHHHH
Confidence 489999999999 99999999998774 2 999999999999877 66642 4777766 889999999999
Q ss_pred HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeee
Q psy8674 350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGI 394 (439)
Q Consensus 350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~ 394 (439)
+..|+++||+++|+|+.+++++++.+++.+..++. ....+.....
T Consensus 67 ~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 112 (229)
T cd02511 67 LELATNDWVLSLDADERLTPELADEILALLATDDYDGYYVPRRNFF 112 (229)
T ss_pred HHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEEEEEEEEEE
Confidence 99999999999999999999999999999988764 3444444333
No 70
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.69 E-value=2.1e-16 Score=142.79 Aligned_cols=111 Identities=24% Similarity=0.357 Sum_probs=93.7
Q ss_pred eEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674 271 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGA 350 (439)
Q Consensus 271 vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~ 350 (439)
||||||+||++ +.|.+||+|+.+|+++.+ |||||||+|+|++.+ ++++ ..+.++. .+.|.+.++|.|+
T Consensus 1 vsvii~~~n~~-~~l~~~l~sl~~q~~~~~--evivvdd~s~d~~~~-~~~~------~~~~~~~--~~~g~~~a~n~g~ 68 (221)
T cd02522 1 LSIIIPTLNEA-ENLPRLLASLRRLNPLPL--EIIVVDGGSTDGTVA-IARS------AGVVVIS--SPKGRARQMNAGA 68 (221)
T ss_pred CEEEEEccCcH-HHHHHHHHHHHhccCCCc--EEEEEeCCCCccHHH-HHhc------CCeEEEe--CCcCHHHHHHHHH
Confidence 69999999999 899999999999998666 999999999999876 5544 2466664 4578999999999
Q ss_pred hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeee
Q psy8674 351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG 393 (439)
Q Consensus 351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~ 393 (439)
..+++++++++|+|+.++++|+++++..+......++++....
T Consensus 69 ~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 111 (221)
T cd02522 69 AAARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRF 111 (221)
T ss_pred HhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeee
Confidence 9999999999999999999999999888877666555544433
No 71
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.69 E-value=7.2e-17 Score=160.48 Aligned_cols=174 Identities=16% Similarity=0.140 Sum_probs=115.3
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeE-eeeeeecc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM-TVPVIDGI 80 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~-v~~~~~~~ 80 (439)
+.+.++++.++++ +++++..++|.|.++|+|.|++.|+||||+++|+|+.++|++|+.+++.+.+++... +++....
T Consensus 94 T~~il~~~~~~~~-~v~v~~~~~~~Gka~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~- 171 (439)
T TIGR03111 94 SFQVFCRAQNEFP-GLSLRYMNSDQGKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILT- 171 (439)
T ss_pred HHHHHHHHHHhCC-CeEEEEeCCCCCHHHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEec-
Confidence 4455666777776 888888888999999999999999999999999999999999999999998776543 3333221
Q ss_pred cCCCcccccccCCCCccccccccccc-cccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccc
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGML-YKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGG 159 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ 159 (439)
..+..... .+.+.+... .............+............+|+++++||++++++||||+... +
T Consensus 172 ~~~~~~~~---------~~~~~~~~~~~~~~~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~~~i---~ 239 (439)
T TIGR03111 172 DKELIEKT---------KGRFLKLIRRCEYFEYAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNSETV---G 239 (439)
T ss_pred Cchhhhhh---------cchhhhHhHHhHHHHHHHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCCCCc---C
Confidence 11110000 000000000 0000000000000000011112234578889999999999999998763 4
Q ss_pred hhhHHHHHHHH-hCCcEEEecccceeccccc
Q psy8674 160 ENFELSFKIWM-CGGSIEWVPCSRIVSLIRP 189 (439)
Q Consensus 160 ED~Dl~~Rl~~-~G~~i~~~p~~~v~H~~~~ 189 (439)
||.|+++|++. .|+++.++|++.++|.+..
T Consensus 240 ED~~l~~rl~~~~g~kv~~~~~a~~~~~~p~ 270 (439)
T TIGR03111 240 EDTDMTFQIRELLDGKVYLCENAIFYVDPID 270 (439)
T ss_pred ccHHHHHHHHHhcCCeEEECCCCEEEEECCc
Confidence 99999999975 5999999999999997633
No 72
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.68 E-value=3.6e-16 Score=162.82 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=98.0
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC-CCHHH
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-EGLIR 344 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~-~g~~~ 344 (439)
...|+|||+||+|||+.+.+.+++.++++++|+...+||+||||||+|++.+ +++++ +++++..++| .|+++
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~-la~~~------~v~yI~R~~n~~gKAG 329 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQ-FAQEV------GVKYIARPTHEHAKAG 329 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHH-HHHHC------CcEEEEeCCCCcchHH
Confidence 3468999999999998446788999999999986556999999999998755 54442 5888876655 56899
Q ss_pred HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEee
Q psy8674 345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPV 390 (439)
Q Consensus 345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~ 390 (439)
++|.|++.++||||+++|+|+.+.+++|+.++..+.+++. ++|.+.
T Consensus 330 nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp 376 (852)
T PRK11498 330 NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTP 376 (852)
T ss_pred HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcc
Confidence 9999999999999999999999999999999998766555 555543
No 73
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.67 E-value=1.7e-16 Score=155.17 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=110.1
Q ss_pred hhHHHHHHHHhcC--CcEEEEEecC----CCChhHHHHhhhhhcc-----CcEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674 2 LDKKLEDYIERFN--GKVRLIRNTE----REGLIRTRSRGAKESR-----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 70 (439)
Q Consensus 2 ~~~~l~~~~~~~~--~~i~~i~~~~----n~G~a~arN~G~~~A~-----g~~i~flD~D~~~~~~~l~~l~~~~~~~~~ 70 (439)
+.+.++++.+++| +++++++.++ +.|.+.|+|.|++.|+ ||||+|+|+|+.++|+||+++++.+++++.
T Consensus 84 T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~ 163 (384)
T TIGR03469 84 TADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGL 163 (384)
T ss_pred HHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCC
Confidence 4567788877775 3799998533 2477889999999999 999999999999999999999999987766
Q ss_pred eEeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCC
Q psy8674 71 IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGY 150 (439)
Q Consensus 71 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgf 150 (439)
+++++............. ....+.+.. .. ..+.. .. ......+....|+|+++||++|+++|||
T Consensus 164 ~~vs~~~~~~~~~~~~~~--------~~~~~~~~~--~~-~~~~~----~~-~~~~~~~~~~~G~~~lirr~~~~~vGGf 227 (384)
T TIGR03469 164 DLVSLMVRLRCESFWEKL--------LIPAFVFFF--QK-LYPFR----WV-NDPRRRTAAAAGGCILIRREALERIGGI 227 (384)
T ss_pred CEEEecccccCCCHHHHH--------HHHHHHHHH--HH-hcchh----hh-cCCCccceeecceEEEEEHHHHHHcCCH
Confidence 655433221111000000 000000000 00 00000 00 0011123456799999999999999999
Q ss_pred CCCCCCccchhhHHHHHHHHhCCcEEEecccce
Q psy8674 151 DPGLLVWGGENFELSFKIWMCGGSIEWVPCSRI 183 (439)
Q Consensus 151 de~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v 183 (439)
|+..+.+ .||++|+.|++++|+++.+.+....
T Consensus 228 ~~~~~~~-~ED~~L~~r~~~~G~~v~~~~~~~~ 259 (384)
T TIGR03469 228 AAIRGAL-IDDCTLAAAVKRSGGRIWLGLAART 259 (384)
T ss_pred HHHhhCc-ccHHHHHHHHHHcCCcEEEEecCce
Confidence 9866544 4999999999999999998665443
No 74
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.67 E-value=6.6e-16 Score=161.68 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=100.0
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhH-------------HHHHHHHHHHcCCcEE
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADL-------------DQKLEDYIQRFNGKVR 332 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~-------------~~~~~~~~~~~~~~v~ 332 (439)
...|+|||+||+|||+.+.+++|+.++.+++|+...+||+||||||+|+|. .+.+++++++. +++
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~--~v~ 205 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL--GVN 205 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc--CcE
Confidence 456899999999999834557899999999999545599999999999872 23566666664 588
Q ss_pred EEEcCCC-CCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEE
Q psy8674 333 LIRNTER-EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTV 388 (439)
Q Consensus 333 ~i~~~~~-~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~ 388 (439)
++..++| .++++++|.|++.++|||++++|+|+.+.+++|++++..+.+++. ++|.
T Consensus 206 yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vq 263 (713)
T TIGR03030 206 YITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQ 263 (713)
T ss_pred EEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEe
Confidence 8877776 468999999999999999999999999999999999999976665 4443
No 75
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.67 E-value=4.3e-16 Score=143.06 Aligned_cols=165 Identities=14% Similarity=0.083 Sum_probs=114.1
Q ss_pred hhHHHHHHHHhcC-CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674 2 LDKKLEDYIERFN-GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI 80 (439)
Q Consensus 2 ~~~~l~~~~~~~~-~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 80 (439)
+.+.++++.++++ .+++++.+++|.|+++|+|.|++.|+|+||+|+|+|+.++|++|+.+++.+.+++.+++.+.....
T Consensus 54 t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~ 133 (243)
T PLN02726 54 TQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVK 133 (243)
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccC
Confidence 4566777777665 579999999999999999999999999999999999999999999999999876666665432211
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
.... .+..+.. .+.....................|+++++||++++++|.+.+... + ..
T Consensus 134 ~~~~--------------~~~~~~r-----~~~~~~~~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i~~~~~~~~-~-~~ 192 (243)
T PLN02726 134 GGGV--------------HGWDLRR-----KLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDLVSSVVSKG-Y-VF 192 (243)
T ss_pred CCCc--------------CCccHHH-----HHHHHHHHHHHHHHhCCCCCcCCCcccceeHHHHHHHHhhccCCC-c-EE
Confidence 1000 0000000 000000000000000113334578899999999999987655432 2 36
Q ss_pred hhHHHHHHHHhCCcEEEecccceeccc
Q psy8674 161 NFELSFKIWMCGGSIEWVPCSRIVSLI 187 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~ 187 (439)
|+||++|+..+|+++..+|...+.|..
T Consensus 193 ~~el~~~~~~~g~~i~~vp~~~~~r~~ 219 (243)
T PLN02726 193 QMEIIVRASRKGYRIEEVPITFVDRVY 219 (243)
T ss_pred ehHHHHHHHHcCCcEEEeCcEEeCCCC
Confidence 899999999999999999988877664
No 76
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.66 E-value=6.8e-16 Score=132.56 Aligned_cols=109 Identities=28% Similarity=0.413 Sum_probs=95.0
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 352 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~ 352 (439)
||||+||+. +.|.++|+|+.+|+++.. |||||||||++++.+ .++++. .+++++..+.+.|.+.++|.|++.
T Consensus 1 vii~~~~~~-~~l~~~l~sl~~~~~~~~--~iiivdd~s~~~~~~-~~~~~~----~~~~~~~~~~~~g~~~a~n~~~~~ 72 (166)
T cd04186 1 IIIVNYNSL-EYLKACLDSLLAQTYPDF--EVIVVDNASTDGSVE-LLRELF----PEVRLIRNGENLGFGAGNNQGIRE 72 (166)
T ss_pred CEEEecCCH-HHHHHHHHHHHhccCCCe--EEEEEECCCCchHHH-HHHHhC----CCeEEEecCCCcChHHHhhHHHhh
Confidence 699999998 999999999999988666 999999999998866 555432 258888888999999999999999
Q ss_pred cCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEe
Q psy8674 353 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVP 389 (439)
Q Consensus 353 a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~ 389 (439)
+++++++|+|+|+.++++++..+++.+...+. .++.+
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 110 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGP 110 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEc
Confidence 99999999999999999999999998877665 44444
No 77
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.66 E-value=2.6e-16 Score=153.45 Aligned_cols=167 Identities=15% Similarity=0.153 Sum_probs=109.2
Q ss_pred hhHHHHHHHHhcC-CcEEEEEecCCCChh---HHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674 2 LDKKLEDYIERFN-GKVRLIRNTEREGLI---RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 77 (439)
Q Consensus 2 ~~~~l~~~~~~~~-~~i~~i~~~~n~G~a---~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 77 (439)
+.+.++++.+++| .+|+++..+++.|.. .+.+.++++|+||+|+|+|+|+.++|+||+.+++.+++....++++..
T Consensus 84 t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~ 163 (373)
T TIGR03472 84 ALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLY 163 (373)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccc
Confidence 3567888888887 358888877777753 345557899999999999999999999999999999754445554321
Q ss_pred ecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674 78 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW 157 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~ 157 (439)
......++ ...+... .......+....... . .......|++|++||++|+++|||++-....
T Consensus 164 ~~~~~~~~------------~~~l~~~-~~~~~~~~~~~~~~~---~--~~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~ 225 (373)
T TIGR03472 164 RGRPVPGF------------WSRLGAM-GINHNFLPSVMVARA---L--GRARFCFGATMALRRATLEAIGGLAALAHHL 225 (373)
T ss_pred cCCCCCCH------------HHHHHHH-HhhhhhhHHHHHHHh---c--cCCccccChhhheeHHHHHHcCChHHhcccc
Confidence 11111110 0000000 000001111000000 0 0112356899999999999999999754433
Q ss_pred cchhhHHHHHHHHhCCcEEEecccceeccc
Q psy8674 158 GGENFELSFKIWMCGGSIEWVPCSRIVSLI 187 (439)
Q Consensus 158 ~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~ 187 (439)
.||++|+.|+.++|+++.+.|....++..
T Consensus 226 -~ED~~l~~~i~~~G~~v~~~~~~v~~~~~ 254 (373)
T TIGR03472 226 -ADDYWLGELVRALGLRVVLAPVVVDTDVH 254 (373)
T ss_pred -hHHHHHHHHHHHcCCeEEecchhhhcCCC
Confidence 49999999999999999999987555554
No 78
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1.2e-15 Score=152.56 Aligned_cols=122 Identities=29% Similarity=0.369 Sum_probs=108.5
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc-CCCCCHHHHH
Q psy8674 268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN-TEREGLIRTR 346 (439)
Q Consensus 268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~-~~~~g~~~a~ 346 (439)
.|++||+||+|||+.+.+++++.|+.+|+|+.+ ||+||||+|+|++.+ ++++...+++++++++.. .++.|+++|.
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~--evivv~d~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~gK~~al 129 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRY--EVIVVDDGSTDETYE-ILEELGAEYGPNFRVIYPEKKNGGKAGAL 129 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCc--eEEEECCCCChhHHH-HHHHHHhhcCcceEEEeccccCccchHHH
Confidence 589999999999994499999999999999987 999999999999988 999888887446676644 5788999999
Q ss_pred HHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674 347 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID 392 (439)
Q Consensus 347 n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 392 (439)
|.|+..+++|+|+++|+|..+++++|.+++..+.+++.++++....
T Consensus 130 ~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~ 175 (439)
T COG1215 130 NNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPR 175 (439)
T ss_pred HHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCce
Confidence 9999999999999999999999999999999999988876664443
No 79
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=1.5e-15 Score=136.34 Aligned_cols=107 Identities=33% Similarity=0.389 Sum_probs=94.9
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHH
Q psy8674 268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRS 347 (439)
Q Consensus 268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n 347 (439)
+|++|||||+||++ ..|.++|+|+.+|++.++ |||||||||+|+|.+ ++.++.... ..+.......+.|.+.++|
T Consensus 2 ~~~~siiip~~n~~-~~l~~~l~s~~~q~~~~~--eiivvddgs~d~t~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~~~ 76 (291)
T COG0463 2 MPKVSVVIPTYNEE-EYLPEALESLLNQTYKDF--EIIVVDDGSTDGTTE-IAIEYGAKD-VRVIRLINERNGGLGAARN 76 (291)
T ss_pred CccEEEEEeccchh-hhHHHHHHHHHhhhhcce--EEEEEeCCCCCChHH-HHHHHhhhc-ceEEEeecccCCChHHHHH
Confidence 57999999999999 999999999999999876 999999999999988 888887654 2466666789999999999
Q ss_pred HHHhhcCCCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674 348 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY 380 (439)
Q Consensus 348 ~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~ 380 (439)
.|+..+.+++++++|+|+. .+..+..++....
T Consensus 77 ~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~~ 108 (291)
T COG0463 77 AGLEYARGDYIVFLDADDQ-HPPELIPLVAAGG 108 (291)
T ss_pred hhHHhccCCEEEEEccCCC-CCHHHHHHHHHhh
Confidence 9999999999999999999 9888888555554
No 80
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.63 E-value=2.6e-15 Score=135.64 Aligned_cols=136 Identities=20% Similarity=0.237 Sum_probs=92.5
Q ss_pred cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCCCC
Q psy8674 16 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDH 95 (439)
Q Consensus 16 ~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 95 (439)
+++++. .+.|.+.|+|.|+..|+|++|+|+|+|+.++|+|++.++..+......++.......+.... ..
T Consensus 50 ~~~~~~--~~~g~~~a~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~------- 119 (221)
T cd02522 50 GVVVIS--SPKGRARQMNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRFDDPGPR-LR------- 119 (221)
T ss_pred CeEEEe--CCcCHHHHHHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeeecCCccc-hh-------
Confidence 466654 46789999999999999999999999999999999999877765554443322222111110 00
Q ss_pred ccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCCcE
Q psy8674 96 HYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSI 175 (439)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~~i 175 (439)
.....+.... ..... ...++++++||++|+++||||+.+ + +||+||++|++++|+++
T Consensus 120 --~~~~~~~~~~-----------------~~~~~-~~~~~~~~~r~~~~~~~G~fd~~~--~-~ED~d~~~r~~~~G~~~ 176 (221)
T cd02522 120 --LLELGANLRS-----------------RLFGL-PYGDQGLFIRRELFEELGGFPELP--L-MEDVELVRRLRRRGRPA 176 (221)
T ss_pred --hhhhccccee-----------------cccCC-CcCCceEEEEHHHHHHhCCCCccc--c-ccHHHHHHHHHhCCCEE
Confidence 0000000000 00111 123458999999999999999998 3 49999999999999998
Q ss_pred EEecccceec
Q psy8674 176 EWVPCSRIVS 185 (439)
Q Consensus 176 ~~~p~~~v~H 185 (439)
.+ |...+.+
T Consensus 177 ~~-~~~~~~~ 185 (221)
T cd02522 177 LL-PSPVTTS 185 (221)
T ss_pred Ec-Cceeeec
Confidence 77 6554443
No 81
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.62 E-value=3e-15 Score=141.98 Aligned_cols=121 Identities=30% Similarity=0.407 Sum_probs=104.2
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHH
Q psy8674 268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRS 347 (439)
Q Consensus 268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n 347 (439)
+|++++||++||.. +.+.+||.++.+|+++.. ++++|||+|+|++.+ .++... + ++++++.+.+|.|.+++.|
T Consensus 2 ~~~i~~iiv~yn~~-~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~-~~~~~~--~-~~v~~i~~~~NlG~agg~n 74 (305)
T COG1216 2 MPKISIIIVTYNRG-EDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLE-ALKARF--F-PNVRLIENGENLGFAGGFN 74 (305)
T ss_pred CcceEEEEEecCCH-HHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHH-HHHhhc--C-CcEEEEEcCCCccchhhhh
Confidence 57899999999999 999999999999999876 777899999999877 554422 3 3899999999999999999
Q ss_pred HHHhhcCCC---EEEEEcCCCccCCCChHHHHHhhhcCCCEE-EEeeeeeec
Q psy8674 348 RGAKESRGE---VIVFLDAHCEVGLNWLPPLLAPIYSDRKIM-TVPVIDGID 395 (439)
Q Consensus 348 ~g~~~a~~d---~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~-v~~~~~~~~ 395 (439)
.|++.|.++ |+++||+|+.+.+++|++|++.++..+... +.|.+...+
T Consensus 75 ~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~ 126 (305)
T COG1216 75 RGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYD 126 (305)
T ss_pred HHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCC
Confidence 999998765 999999999999999999999999987754 445554443
No 82
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.62 E-value=5.5e-15 Score=137.32 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=104.8
Q ss_pred HHHHHHHHhcC-CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC-eEeeeeeeccc
Q psy8674 4 KKLEDYIERFN-GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGID 81 (439)
Q Consensus 4 ~~l~~~~~~~~-~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~ 81 (439)
+.++++++++. ++|++++++.|.|.++|+|.|++.|+|+||+|||+|+.+.|++|+.+++.+.+... .++.+.. ...
T Consensus 48 ~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~-~~~ 126 (279)
T PRK10018 48 EQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYAND-YVC 126 (279)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccc-eee
Confidence 56788887643 59999999999999999999999999999999999999999999999999876332 2332211 111
Q ss_pred CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN 161 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED 161 (439)
.+.. . +... . .. .+......... +....+.|+..++++..+. .|+|||.+. .+||
T Consensus 127 ~~~~-~----~~~~----~--~~-~~p~~~~~~~~----------~~~~n~ig~~~~~~~~~~~-~~~fd~~~~--~~eD 181 (279)
T PRK10018 127 QGEV-Y----SQPA----S--LP-LYPKSPYSRRL----------FYKRNIIGNQVFTWAWRFK-ECLFDTELK--AAQD 181 (279)
T ss_pred cCcc-c----cccc----c--cC-CCCCCCCCHHH----------HHHhcCcCceeeehhhhhh-hcccCCCCC--cccc
Confidence 1000 0 0000 0 00 00000000000 0011234555566666665 567999985 3599
Q ss_pred hHHHHHHHHhCCcEEEeccc-ceeccccc
Q psy8674 162 FELSFKIWMCGGSIEWVPCS-RIVSLIRP 189 (439)
Q Consensus 162 ~Dl~~Rl~~~G~~i~~~p~~-~v~H~~~~ 189 (439)
+||++|+...|+.++.+|++ .++|+.+.
T Consensus 182 ydlwlrl~~~~~~~~~~~~~l~~y~~~~~ 210 (279)
T PRK10018 182 YDIFLRMVVEYGEPWKVEEATQILHINHG 210 (279)
T ss_pred HHHHHHHHHhcCceEeeccceEEEEcCCC
Confidence 99999999999999999887 44666433
No 83
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.62 E-value=1.9e-15 Score=157.46 Aligned_cols=165 Identities=13% Similarity=0.172 Sum_probs=110.3
Q ss_pred hHHHHHHHHhcCCcEEEEEecCCC-ChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEee-eeeecc
Q psy8674 3 DKKLEDYIERFNGKVRLIRNTERE-GLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGI 80 (439)
Q Consensus 3 ~~~l~~~~~~~~~~i~~i~~~~n~-G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~-~~~~~~ 80 (439)
.+.+.+++++. ++++++.++|. |.++++|.|++.|+||||+++|+|+++.+++|+.++..+.+++...++ +.....
T Consensus 303 ~D~t~~la~~~--~v~yI~R~~n~~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~ 380 (852)
T PRK11498 303 REEFRQFAQEV--GVKYIARPTHEHAKAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFF 380 (852)
T ss_pred ChHHHHHHHHC--CcEEEEeCCCCcchHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceecc
Confidence 34567777776 49999877655 579999999999999999999999999999999999998777765443 222222
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
+.+.+.... +.+.. .......+. .... ..........+.|+|+++||++|+++||||++. . .|
T Consensus 381 n~dp~~rnl---------~~~~~-~~~e~~~fy-~~iq---~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~t--i-tE 443 (852)
T PRK11498 381 SPDPFERNL---------GRFRK-TPNEGTLFY-GLVQ---DGNDMWDATFFCGSCAVIRRKPLDEIGGIAVET--V-TE 443 (852)
T ss_pred CCchHHHhh---------HHHhh-cccchhHHH-HHHH---hHHHhhcccccccceeeeEHHHHHHhcCCCCCc--c-Cc
Confidence 111110000 00000 000000000 0000 000112234567999999999999999999985 2 49
Q ss_pred hhHHHHHHHHhCCcEEEecccceecc
Q psy8674 161 NFELSFKIWMCGGSIEWVPCSRIVSL 186 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~ 186 (439)
|.|+++|+.++||++.|.|+..+...
T Consensus 444 D~dlslRL~~~Gyrv~yl~~~~a~gl 469 (852)
T PRK11498 444 DAHTSLRLHRRGYTSAYMRIPQAAGL 469 (852)
T ss_pred cHHHHHHHHHcCCEEEEEeccceeEE
Confidence 99999999999999999987766654
No 84
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.62 E-value=5.6e-15 Score=132.64 Aligned_cols=166 Identities=15% Similarity=0.067 Sum_probs=114.2
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCe-Eeeeeeecc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGI 80 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~-~v~~~~~~~ 80 (439)
+.+.++++.++++..++++.+++|.|.++++|.|+..|+|+||+|+|+|+.+.|++|+.+++.+..++.. ++.+.....
T Consensus 41 t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (214)
T cd04196 41 TVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELV 120 (214)
T ss_pred cHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEE
Confidence 5677888888876678899999999999999999999999999999999999999999999996655543 443332222
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
+.+...... .......... ..... .......+.|+++++||++++++|+|++.+. ..|
T Consensus 121 ~~~~~~~~~----------~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~ 178 (214)
T cd04196 121 DENGNPIGE----------SFFEYQKIKP-GTSFN---------NLLFQNVVTGCTMAFNRELLELALPFPDADV--IMH 178 (214)
T ss_pred CCCCCCccc----------ccccccccCC-ccCHH---------HHHHhCccCCceeeEEHHHHHhhcccccccc--ccc
Confidence 211100000 0000000000 00000 0111234568899999999999999999852 249
Q ss_pred hhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674 161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~ 190 (439)
|.++.+++.. |+++.+.|...+.|..+..
T Consensus 179 D~~~~~~~~~-~~~~~~~~~~~~~~r~~~~ 207 (214)
T cd04196 179 DWWLALLASA-FGKVVFLDEPLILYRQHGN 207 (214)
T ss_pred hHHHHHHHHH-cCceEEcchhHHHHhcccc
Confidence 9999998877 7789999988886665444
No 85
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.61 E-value=5.3e-15 Score=135.17 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=89.3
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 352 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~ 352 (439)
+|||+||++.+.|.+||+|+.+| .. |||||||+|+|.+.. ..+ + . ..+++++..+.|.|.+.|+|.|++.
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q---~~--~iivvDn~s~~~~~~-~~~-~--~-~~~i~~i~~~~n~G~~~a~N~g~~~ 70 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ---VD--KVVVVDNSSGNDIEL-RLR-L--N-SEKIELIHLGENLGIAKALNIGIKA 70 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc---CC--EEEEEeCCCCccHHH-Hhh-c--c-CCcEEEEECCCceehHHhhhHHHHH
Confidence 58999999879999999999998 34 999999999876543 322 2 1 2478999999999999999999999
Q ss_pred cCC---CEEEEEcCCCccCCCChHHHH---HhhhcCCC-EEEEeeee
Q psy8674 353 SRG---EVIVFLDAHCEVGLNWLPPLL---APIYSDRK-IMTVPVID 392 (439)
Q Consensus 353 a~~---d~i~~ld~D~~~~~~~l~~l~---~~~~~~~~-~~v~~~~~ 392 (439)
|++ ||++|+|+|+.++|+||+.++ ..+..++. .+++|.+.
T Consensus 71 a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 117 (237)
T cd02526 71 ALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRII 117 (237)
T ss_pred HHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEE
Confidence 987 999999999999999999995 55554544 45556544
No 86
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.61 E-value=6.5e-16 Score=141.05 Aligned_cols=157 Identities=15% Similarity=0.090 Sum_probs=105.3
Q ss_pred CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCCC
Q psy8674 15 GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPD 94 (439)
Q Consensus 15 ~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (439)
+.++++. .+|.|.+.|+|.|++.|+|+||+|+|+|+.++|+||+.+++.+..+...++++...........
T Consensus 53 ~~~~v~~-~~~~g~~~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~~~-------- 123 (235)
T cd06434 53 GGIFVIT-VPHPGKRRALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRDSK-------- 123 (235)
T ss_pred CcEEEEe-cCCCChHHHHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcccH--------
Confidence 3677775 7899999999999999999999999999999999999999999844445555443332221000
Q ss_pred CccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCC--------CCccchhhHHHH
Q psy8674 95 HHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGL--------LVWGGENFELSF 166 (439)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~--------~~~~~ED~Dl~~ 166 (439)
....+.... +.... .. ............+.|+++++||++++++| |++.| ....+||.+|+.
T Consensus 124 ~~~~~~~~~-----~~~~~--~~--~~~~~~~~~~~~~~G~~~~~rr~~l~~~~-~~~~~~~~~~~~~~~~~~eD~~l~~ 193 (235)
T cd06434 124 WSFLAAEYL-----ERRNE--EI--RAAMSYDGGVPCLSGRTAAYRTEILKDFL-FLEEFTNETFMGRRLNAGDDRFLTR 193 (235)
T ss_pred HHHHHHHHH-----HHHHH--HH--HHHHhhCCCEEEccCcHHHHHHHHHhhhh-hHHHhhhhhhcCCCCCcCchHHHHH
Confidence 000000000 00000 00 00001111234567889999999999985 44433 223469999999
Q ss_pred HHHHhCCcEEEecccceecccccc
Q psy8674 167 KIWMCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 167 Rl~~~G~~i~~~p~~~v~H~~~~~ 190 (439)
|+.+.|+++.+.|.+.++|.....
T Consensus 194 ~~~~~g~~~~~~~~~~~~~~~~~~ 217 (235)
T cd06434 194 YVLSHGYKTVYQYTSEAYTETPEN 217 (235)
T ss_pred HHHHCCCeEEEecCCeEEEEcchh
Confidence 999999999999999999874443
No 87
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.60 E-value=1.9e-15 Score=139.41 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=111.7
Q ss_pred hHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccC
Q psy8674 3 DKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY 82 (439)
Q Consensus 3 ~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~ 82 (439)
.+.++++.++ +++++.+++|.|.++|+|.|++.|+||||+|+|+|+.++|+||+.+++.++++...++++.......
T Consensus 75 ~~~~~~~~~~---~v~~i~~~~~~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~ 151 (251)
T cd06439 75 AEIAREYADK---GVKLLRFPERRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDG 151 (251)
T ss_pred HHHHHHHhhC---cEEEEEcCCCCChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCC
Confidence 3444444433 4999999999999999999999999999999999999999999999999975555666665544332
Q ss_pred CCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhh
Q psy8674 83 QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENF 162 (439)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~ 162 (439)
.. .. ....+.|.+. ...... ...........|+++++||++|+ +|++.. ..||.
T Consensus 152 ~~---~~-------~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~g~~~~~rr~~~~---~~~~~~---~~eD~ 205 (251)
T cd06439 152 GG---SG-------SGEGLYWKYE-------NWLKRA---ESRLGSTVGANGAIYAIRRELFR---PLPADT---INDDF 205 (251)
T ss_pred cc---cc-------hhHHHHHHHH-------HHHHHH---HHhcCCeeeecchHHHhHHHHhc---CCCccc---chhHH
Confidence 21 00 0000111100 000000 00111223457888899999999 676654 24999
Q ss_pred HHHHHHHHhCCcEEEecccceeccccccc
Q psy8674 163 ELSFKIWMCGGSIEWVPCSRIVSLIRPVF 191 (439)
Q Consensus 163 Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~ 191 (439)
++++|+..+|+++.+.|.+.++|......
T Consensus 206 ~l~~~~~~~G~~~~~~~~~~~~~~~~~~~ 234 (251)
T cd06439 206 VLPLRIARQGYRVVYEPDAVAYEEVAEDG 234 (251)
T ss_pred HHHHHHHHcCCeEEeccccEEEEeCcccH
Confidence 99999999999999999999998876554
No 88
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.58 E-value=1.1e-14 Score=152.51 Aligned_cols=168 Identities=16% Similarity=0.171 Sum_probs=112.7
Q ss_pred HHHHHHHHhcCCcEEEEEecCCC-ChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEee-eeeeccc
Q psy8674 4 KKLEDYIERFNGKVRLIRNTERE-GLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGID 81 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~-G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~-~~~~~~~ 81 (439)
+.++++.++. ++++++.++|. |.+++.|.|+++|+||||+++|+|++++|++|+.++..+.+++..+.+ +.....+
T Consensus 193 ~~~~~l~~~~--~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~ 270 (713)
T TIGR03030 193 EELKEFCRKL--GVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVS 270 (713)
T ss_pred HHHHHHHHHc--CcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccC
Confidence 4566677766 59999888885 568899999999999999999999999999999999999877665332 2111111
Q ss_pred CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN 161 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED 161 (439)
.+.....- +.+....... ..+....... ........+.|+|+++||++++++|||++... .||
T Consensus 271 p~~~~~nl---------~~~~~~~~e~-~~f~~~i~~g----~~~~~~~~~~Gs~~~iRR~al~~iGGf~~~~v---tED 333 (713)
T TIGR03030 271 PDPIERNL---------GTFRRMPNEN-ELFYGLIQDG----NDFWNAAFFCGSAAVLRREALDEIGGIAGETV---TED 333 (713)
T ss_pred CCHHhhhh---------HHHHHhhhHH-HHHHHHHHHH----HhhhCCeeecCceeEEEHHHHHHcCCCCCCCc---CcH
Confidence 11110000 0000000000 0000000000 01112335678899999999999999998753 499
Q ss_pred hHHHHHHHHhCCcEEEecccceecccccc
Q psy8674 162 FELSFKIWMCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 162 ~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~ 190 (439)
+|+++|++++||++.|.|++.+++.....
T Consensus 334 ~~l~~rL~~~G~~~~y~~~~~~~g~~p~s 362 (713)
T TIGR03030 334 AETALKLHRRGWNSAYLDRPLIAGLAPET 362 (713)
T ss_pred HHHHHHHHHcCCeEEEeccccccccCCCC
Confidence 99999999999999999999888775544
No 89
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.54 E-value=1.1e-14 Score=127.71 Aligned_cols=142 Identities=16% Similarity=0.060 Sum_probs=97.9
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 81 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 81 (439)
+.+.++++.++.+ .++++.+++|.|+++|+|.|++.|+|||++|+|+|+.+.|+||+.++..+...+..++.+......
T Consensus 42 ~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~ 120 (185)
T cd04179 42 TAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVRG 120 (185)
T ss_pred hHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecCC
Confidence 4567778888786 889999999999999999999999999999999999999999999999966665555544332221
Q ss_pred CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHh--CCCCCCCCCccc
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL--GGYDPGLLVWGG 159 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~i--Ggfde~~~~~~~ 159 (439)
... . .........+.. ................|+++++||++|+++ |+|+++|.
T Consensus 121 ~~~--~------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~~~---- 176 (185)
T cd04179 121 GGA--G------MPLLRRLGSRLF------------NFLIRLLLGVRISDTQSGFRLFRREVLEALLSLLESNGFE---- 176 (185)
T ss_pred Ccc--c------chHHHHHHHHHH------------HHHHHHHcCCCCcCCCCceeeeHHHHHHHHHhhccccCcc----
Confidence 110 0 000000000000 000000012334556788999999999999 78888874
Q ss_pred hhhHHHHHH
Q psy8674 160 ENFELSFKI 168 (439)
Q Consensus 160 ED~Dl~~Rl 168 (439)
.|.|+++|+
T Consensus 177 ~~~~~~~~~ 185 (185)
T cd04179 177 FGLELLVGA 185 (185)
T ss_pred eeeEeeecC
Confidence 677888773
No 90
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.54 E-value=1.8e-14 Score=137.56 Aligned_cols=169 Identities=17% Similarity=0.132 Sum_probs=109.0
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 81 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 81 (439)
+.+.+++|.++++ +|++++ ++|.|.++|||.|++.|+|+||+|+|+|+.+.|++++.+++.+.+++.+++.+......
T Consensus 49 t~~i~~~~~~~~~-~i~vi~-~~n~G~~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~~~~~~~ 126 (328)
T PRK10073 49 SVEIAKHYAENYP-HVRLLH-QANAGVSVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQCNADWCF 126 (328)
T ss_pred HHHHHHHHHhhCC-CEEEEE-CCCCChHHHHHHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEEccEEEE
Confidence 4577888888886 999997 67999999999999999999999999999999999999999988766555433222111
Q ss_pred CCCcccccccCCCCccccccccccccccCCCch-HHHhhccCCCCCccCccccceEEEEeHHHHHHhC-CCCCCCCCccc
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPE-REAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG-GYDPGLLVWGG 159 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG-gfde~~~~~~~ 159 (439)
.......... ........ ..+.. ....... .... .. ...++-++||+++++.| .|++++. .
T Consensus 127 ~~~~~~~~~~-----~~~~~~~~-----~~~~~~~~l~~~l-~~~~--~~-~~~~~~l~Rr~~l~~~~~~f~~~~~---~ 189 (328)
T PRK10073 127 RDTGETWQSI-----PSDRLRST-----GVLSGPDWLRMAL-SSRR--WT-HVVWLGVYRRDFIVKNNIKFEPGLH---H 189 (328)
T ss_pred eCCCcccccc-----cccccccc-----ceechHHHHHHHH-hhCC--CC-ccHhHHHHHHHHHHHcCCccCCCCE---e
Confidence 1110000000 00000000 00000 0000000 0000 00 11223478999999998 5777763 4
Q ss_pred hhhHHHHHHHHhCCcEEEecccceeccccc
Q psy8674 160 ENFELSFKIWMCGGSIEWVPCSRIVSLIRP 189 (439)
Q Consensus 160 ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~ 189 (439)
||.++.+++...+.++.++|+...++..|.
T Consensus 190 eD~~~~~~~~~~~~~v~~~~~~ly~Yr~~~ 219 (328)
T PRK10073 190 QDIPWTTEVMFNALRVRYTEQSLYKYYLHD 219 (328)
T ss_pred ccHHHHHHHHHHCCEEEEECCCEEEEEecC
Confidence 999999999999999999998766554443
No 91
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.54 E-value=1.5e-13 Score=126.16 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=95.9
Q ss_pred hHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccC
Q psy8674 3 DKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY 82 (439)
Q Consensus 3 ~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~ 82 (439)
.+.++++..+. +++++. .+|.|+++|+|.|++.|+|+||+|||+|+.+.|+.++.+......++..++++.......
T Consensus 48 ~~i~~~~~~~~--~i~~i~-~~~~G~~~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 124 (248)
T PRK10063 48 REFLENLNGIF--NLRFVS-EPDNGIYDAMNKGIAMAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGDALLDFG 124 (248)
T ss_pred HHHHHHhcccC--CEEEEE-CCCCCHHHHHHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEeeeEEEcC
Confidence 34444443322 589997 457799999999999999999999999999999987665544444444454443321111
Q ss_pred CCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhh
Q psy8674 83 QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENF 162 (439)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~ 162 (439)
+..... .. ..+..... ... ...+.+++++|+.|. .|+||+.+.. .||+
T Consensus 125 ~~~~~~--------------~~------~~~~~~~~--------~~~-~~~~~~~~~~~~~~~-~~~fd~~~~~--~~Dy 172 (248)
T PRK10063 125 DGHKIK--------------RS------AKPGWYIY--------HSL-PASHQAIFFPVSGLK-KWRYDLQYKV--SSDY 172 (248)
T ss_pred CCcEEE--------------Ec------cCChhHHh--------cCC-CCCCcEEEEEHHHHh-cCCCCcccch--HHhH
Confidence 100000 00 00000000 000 123446788999987 4789998852 5999
Q ss_pred HHHHHHHHhCCcEEEecccceecc
Q psy8674 163 ELSFKIWMCGGSIEWVPCSRIVSL 186 (439)
Q Consensus 163 Dl~~Rl~~~G~~i~~~p~~~v~H~ 186 (439)
||.+|+..+|+++.++|.....+.
T Consensus 173 dl~lrl~~~g~~~~~v~~~l~~y~ 196 (248)
T PRK10063 173 ALAARLYKAGYAFKKLNGLVSEFS 196 (248)
T ss_pred HHHHHHHHcCCcEEEcCceeEEEe
Confidence 999999999999999998776543
No 92
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.54 E-value=2.2e-14 Score=131.74 Aligned_cols=100 Identities=20% Similarity=0.124 Sum_probs=81.1
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCc--------CCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHH-
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPA--------QYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLI- 343 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~--------~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~- 343 (439)
||||+|||+...|.++|+|+++|+|+ ...+|||||||||+| .|.|+.
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~gk~~ 56 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRGKRD 56 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCcchH
Confidence 69999999636899999999999998 334599999999998 112222
Q ss_pred ------HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeeecC
Q psy8674 344 ------RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGIDY 396 (439)
Q Consensus 344 ------~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~ 396 (439)
.+.|.++..+++|||+++|+|+.+++++|..++..|..++. ++|++.+...+.
T Consensus 57 ~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~ 116 (244)
T cd04190 57 SQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGK 116 (244)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCC
Confidence 36788888999999999999999999999999999965554 666776655544
No 93
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.53 E-value=3.8e-14 Score=133.14 Aligned_cols=106 Identities=21% Similarity=0.257 Sum_probs=87.4
Q ss_pred EecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChh-hHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc-
Q psy8674 276 VFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKA-DLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES- 353 (439)
Q Consensus 276 p~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a- 353 (439)
++||++.+.|.+||+|+.+|. . +||||||||+++ +++ .+.+.. +++++++.++|.|.+.|+|.|++.|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~---~--~iiVVDN~S~~~~~~~----~~~~~~-~~i~~i~~~~N~G~a~a~N~Gi~~a~ 70 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQV---D--RIIAVDNSPHSDQPLK----NARLRG-QKIALIHLGDNQGIAGAQNQGLDASF 70 (281)
T ss_pred CccCccHHHHHHHHHHHHhcC---C--EEEEEECcCCCcHhHH----HHhccC-CCeEEEECCCCcchHHHHHHHHHHHH
Confidence 479985489999999999985 3 999999999764 333 333333 3799999999999999999999998
Q ss_pred --CCCEEEEEcCCCccCCCChHHHHHhhhcCC--CEEEEeee
Q psy8674 354 --RGEVIVFLDAHCEVGLNWLPPLLAPIYSDR--KIMTVPVI 391 (439)
Q Consensus 354 --~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~--~~~v~~~~ 391 (439)
.+|||++||+|+.+++++|+.+++.++.++ .++++|.+
T Consensus 71 ~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 112 (281)
T TIGR01556 71 RRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRF 112 (281)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeE
Confidence 689999999999999999999999998764 45555654
No 94
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.53 E-value=3.5e-14 Score=127.46 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=103.8
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 81 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 81 (439)
+.+.++++.++++..|+++++++|.|.++|+|.|++.|+|+||+|+|+|+.++|++++.+++.+.+++.+++.+......
T Consensus 44 t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~ 123 (211)
T cd04188 44 TAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLA 123 (211)
T ss_pred hHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccC
Confidence 45677888887774469999999999999999999999999999999999999999999999977666665554432211
Q ss_pred CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN 161 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED 161 (439)
...... ....+....... ..... . ..... ......+..+++|+++.++++..+.. .++ +|
T Consensus 124 ~~~~~~------~~~~~~~~~~~~--------~~~~~-~-~~~~~--~~d~~~g~~~~~r~~~~~~~~~~~~~-~~~-~d 183 (211)
T cd04188 124 SAAVVK------RSWLRNLLGRGF--------NFLVR-L-LLGLG--IKDTQCGFKLFTRDAARRLFPRLHLE-RWA-FD 183 (211)
T ss_pred Cccccc------ccHHHHHHHHHH--------HHHHH-H-HcCCC--CcccccCceeEcHHHHHHHHhhhhcc-ceE-ee
Confidence 110000 000000000000 00000 0 00011 11112345789999999997543221 233 79
Q ss_pred hHHHHHHHHhCCcEEEec
Q psy8674 162 FELSFKIWMCGGSIEWVP 179 (439)
Q Consensus 162 ~Dl~~Rl~~~G~~i~~~p 179 (439)
+||++|+.++|+++..+|
T Consensus 184 ~el~~r~~~~g~~~~~vp 201 (211)
T cd04188 184 VELLVLARRLGYPIEEVP 201 (211)
T ss_pred HHHHHHHHHcCCeEEEcC
Confidence 999999999999999999
No 95
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.50 E-value=2e-13 Score=127.81 Aligned_cols=116 Identities=27% Similarity=0.436 Sum_probs=90.3
Q ss_pred EEEEEecCCCh-----hHHHHHHHHHHhc-CCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC---CCCH
Q psy8674 272 SVILVFHNEGF-----SSLMRTVHSIIKR-TPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE---REGL 342 (439)
Q Consensus 272 siiip~~n~~~-----~~l~~~l~sl~~q-~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~---~~g~ 342 (439)
|||||++++.. +.|..||.++..+ ..+++ ||||||+||++.+.+ .+.++.+... ...++..+. ..|.
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~--eiIvvd~~s~~~~~~-~l~~~~~~~~-~~~~i~~~~~~~~f~~ 76 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDF--EIIVVDDGSSDEFDE-ELKKLCEKNG-FIRYIRHEDNGEPFSR 76 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCE--EEEEEECCCchhHHH-HHHHHHhccC-ceEEEEcCCCCCCcCH
Confidence 79999999871 3466678888774 34444 999999999987655 6777776644 343555543 3699
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHH---hhhcCCC-EEEEeee
Q psy8674 343 IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA---PIYSDRK-IMTVPVI 391 (439)
Q Consensus 343 ~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~---~~~~~~~-~~v~~~~ 391 (439)
+.|+|.|++.|++++|+|+|+|+.++|++++.++. .+..++. .++.|..
T Consensus 77 a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~ 129 (281)
T PF10111_consen 77 AKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCL 129 (281)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 99999999999999999999999999999999999 6766554 5566654
No 96
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.49 E-value=4.3e-13 Score=123.01 Aligned_cols=126 Identities=13% Similarity=0.170 Sum_probs=94.2
Q ss_pred eEEEEEecCCChhHHHHHHHHHHh----cCC-cCCcceEEEEeCCCChhhHH---HHHHHHHHHcC--CcEEEEEcCCCC
Q psy8674 271 ASVILVFHNEGFSSLMRTVHSIIK----RTP-AQYLEEIILVDDFSSKADLD---QKLEDYIQRFN--GKVRLIRNTERE 340 (439)
Q Consensus 271 vsiiip~~n~~~~~l~~~l~sl~~----q~~-~~~~~eiivvdd~s~d~t~~---~~~~~~~~~~~--~~v~~i~~~~~~ 340 (439)
|||+||+||+++..|.++|.++.+ |.+ +.+ ||+|+||++++.... +.+.++.++++ .++++++.+++.
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~--eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~ 78 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHF--DFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENT 78 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCce--EEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCC
Confidence 699999999995568999988775 665 556 999999998764321 12233444443 368888888887
Q ss_pred CH-HHHHHHHHhh--cCCCEEEEEcCCCccCCCChHHHHHhhhcCC-CEEEEeeeeeecCCC
Q psy8674 341 GL-IRTRSRGAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQT 398 (439)
Q Consensus 341 g~-~~a~n~g~~~--a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~~ 398 (439)
|. ++++|.++.. +++|||+++|+|..+.|++|..++..+..++ .++|.......+.++
T Consensus 79 g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~ 140 (254)
T cd04191 79 GRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAET 140 (254)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCC
Confidence 75 6677777765 7889999999999999999999999997544 466655555666655
No 97
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.48 E-value=5e-13 Score=132.93 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=91.2
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHH-hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC--CCCCHH
Q psy8674 267 DLPKASVILVFHNEGFSSLMRTVHSII-KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--EREGLI 343 (439)
Q Consensus 267 ~~p~vsiiip~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~g~~ 343 (439)
+.|.++|+||+|||+ +.|.++|+|++ +++|+++ ||+|++|+|+|+|.+ .++++.++++ +++++..+ ...|++
T Consensus 64 ~~p~vaIlIPA~NE~-~vI~~~l~s~L~~ldY~~~--eIiVv~d~ndd~T~~-~v~~l~~~~p-~v~~vv~~~~gp~~Ka 138 (504)
T PRK14716 64 PEKRIAIFVPAWREA-DVIGRMLEHNLATLDYENY--RIFVGTYPNDPATLR-EVDRLAARYP-RVHLVIVPHDGPTSKA 138 (504)
T ss_pred CCCceEEEEeccCch-hHHHHHHHHHHHcCCCCCe--EEEEEECCCChhHHH-HHHHHHHHCC-CeEEEEeCCCCCCCHH
Confidence 467899999999999 99999999965 5678876 999999999999987 8898888877 56654433 235699
Q ss_pred HHHHHHHhhc------CC---CEEEEEcCCCccCCCChHHHHHhhhc
Q psy8674 344 RTRSRGAKES------RG---EVIVFLDAHCEVGLNWLPPLLAPIYS 381 (439)
Q Consensus 344 ~a~n~g~~~a------~~---d~i~~ld~D~~~~~~~l~~l~~~~~~ 381 (439)
.++|.|++.+ +| |+++++|+|+.++|++|..+...+.+
T Consensus 139 ~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~~ 185 (504)
T PRK14716 139 DCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLPR 185 (504)
T ss_pred HHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcCC
Confidence 9999998754 45 99999999999999999987666543
No 98
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=5.4e-13 Score=133.52 Aligned_cols=165 Identities=19% Similarity=0.197 Sum_probs=113.6
Q ss_pred hhHHHHHHHHhcCCcEEEEEe-cCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRN-TEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI 80 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~-~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 80 (439)
+.+.++++.++++++++++.. .+|.|.++|.|.|+..|+||+|+++|+|++++|++|.+++..+..++..++++.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~ 177 (439)
T COG1215 98 TYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIR 177 (439)
T ss_pred HHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceee
Confidence 456677777777457888843 5889999999999999999999999999999999999999999977766443322211
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
..... ....+...- . .....................+.|++.++||++++++|||++..- .|
T Consensus 178 ~~~~~---------~~~l~~~~~-~-----~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~~~~i---~E 239 (439)
T COG1215 178 NRPDP---------SNLLGRIQA-I-----EYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGGWLEDTI---TE 239 (439)
T ss_pred ecCCh---------hhhcchhcc-h-----hhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCCCCCCce---ec
Confidence 11000 000000000 0 000000000011111123456789999999999999999999873 49
Q ss_pred hhHHHHHHHHhCCcEEEeccccee
Q psy8674 161 NFELSFKIWMCGGSIEWVPCSRIV 184 (439)
Q Consensus 161 D~Dl~~Rl~~~G~~i~~~p~~~v~ 184 (439)
|.++++|+..+|+++.+.|++.++
T Consensus 240 D~~lt~~l~~~G~~~~~~~~~~~~ 263 (439)
T COG1215 240 DADLTLRLHLRGYRVVYVPEAIVW 263 (439)
T ss_pred cHHHHHHHHHCCCeEEEeecceEe
Confidence 999999999999999999998444
No 99
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.45 E-value=3.1e-13 Score=118.20 Aligned_cols=138 Identities=16% Similarity=0.094 Sum_probs=94.0
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 81 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 81 (439)
+.+.++++.++++ +++++.+.+|.|.++|+|.|++.|+|+|++|+|+|+.++++||+.+++.+..+ ..++.+......
T Consensus 43 t~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~v~g~~~~~~ 120 (181)
T cd04187 43 TLEILRELAARDP-RVKVIRLSRNFGQQAALLAGLDHARGDAVITMDADLQDPPELIPEMLAKWEEG-YDVVYGVRKNRK 120 (181)
T ss_pred HHHHHHHHHhhCC-CEEEEEecCCCCcHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCC-CcEEEEEecCCc
Confidence 4567778877776 89999999999999999999999999999999999999999999999996544 344443322211
Q ss_pred CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN 161 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED 161 (439)
... ......+.. . .... . ......+...++++++||++|+++|+|||.+.. ..+
T Consensus 121 ~~~------------~~~~~~~~~--~------~~~~-~---~~~~~~~~~~~~~~~~~r~~~~~i~~~d~~~~~--~~~ 174 (181)
T cd04187 121 ESW------------LKRLTSKLF--Y------RLIN-K---LSGVDIPDNGGDFRLMDRKVVDALLLLPERHRF--LRG 174 (181)
T ss_pred chH------------HHHHHHHHH--H------HHHH-H---HcCCCCCCCCCCEEEEcHHHHHHHHhcCCCCcc--HHH
Confidence 000 000000000 0 0000 0 011233445678899999999999999999863 366
Q ss_pred hHHHHH
Q psy8674 162 FELSFK 167 (439)
Q Consensus 162 ~Dl~~R 167 (439)
.++.++
T Consensus 175 ~~~~~~ 180 (181)
T cd04187 175 LIAWVG 180 (181)
T ss_pred HHHHhc
Confidence 666543
No 100
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=99.45 E-value=3.4e-13 Score=120.46 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=91.6
Q ss_pred HHHHHHhc--C--CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCccc-CCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674 6 LEDYIERF--N--GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVIDGI 80 (439)
Q Consensus 6 l~~~~~~~--~--~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~-~~~~l~~l~~~~~~~~~~~v~~~~~~~ 80 (439)
+.+++++. | ..|.++......+.+.|.|.|++.|+++|++||+.|+.+ .++|+..+++.+++++...+.|.....
T Consensus 16 ~~~~i~~~~~~~~~~i~i~~~~~~~s~~~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~ 95 (217)
T PF13712_consen 16 CLRSIKRLIGPPGELIEIDNVRNAKSMAAAYNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSK 95 (217)
T ss_dssp HHHHHHHTT--TEEEEEEE-SSS-S-TTTHHHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEE
T ss_pred HHHHHHhhCCCCceEEEEeccCCCcCHHHHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCC
Confidence 44555554 2 467788777779999999999999999999999999997 689999999999777776554443321
Q ss_pred cCCCcccccccCCCCccccccccc-ccccc--CCCchHHHhhcc----CCCCCccCccccceEEEEeHHHHHHhCCCCCC
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWG-MLYKE--NELPEREAKKRK----YNSEPYKSPTHAGGLFAMDRAFFLELGGYDPG 153 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~ 153 (439)
.... .+..+......+. ..+.. ...+........ ....+.++.++-|++|+++|+++ +|||.
T Consensus 96 ~~~~-------~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~----~fde~ 164 (217)
T PF13712_consen 96 RLPP-------NGVWWESPNKVGKVREYGRIMHGHGPNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP----RFDED 164 (217)
T ss_dssp SS-S--------TTS---EEEEEETTEEEE----E-------------ES-SSEEEEEE-TTEEEEETTB---------S
T ss_pred cCCC-------CCcccccccccccccccccccccccccccccccccccccCCceeEEEecceEEEEEcccC----CCCcc
Confidence 1110 0000000000000 00000 000000000000 11346677788999999999999 89999
Q ss_pred -CCCccchhhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674 154 -LLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 154 -~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~ 190 (439)
|+.|.+-|+|+|++++++|+++ +.+...+.|.....
T Consensus 165 ~~~gfH~Ydvd~cl~~~~~G~~v-~~~~~~~~H~s~g~ 201 (217)
T PF13712_consen 165 LFTGFHFYDVDQCLEARRAGYRV-VVPPPWCIHFSGGS 201 (217)
T ss_dssp S--SSSSHHHHHHHHHHHTT-EE-EE-----EE-S---
T ss_pred ccCCcchHHHHHHHHHHHhCCEE-EecCceEEEcCCCC
Confidence 5566679999999999999998 44557788875443
No 101
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.44 E-value=4e-13 Score=115.16 Aligned_cols=129 Identities=26% Similarity=0.353 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 81 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 81 (439)
+.+.++++.+.. .+++++++++|.|+++++|.|++.|+|+|++|+|+|+.++|+||+.+++.+++.+.+++.+......
T Consensus 41 ~~~~~~~~~~~~-~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 119 (169)
T PF00535_consen 41 TEEILEEYAESD-PNIRYIRNPENLGFSAARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYID 119 (169)
T ss_dssp HHHHHHHHHCCS-TTEEEEEHCCCSHHHHHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEE
T ss_pred cccccccccccc-cccccccccccccccccccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEec
Confidence 456677776633 4899999999999999999999999999999999999999999999999999977776655544433
Q ss_pred CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhC
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG 148 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG 148 (439)
........... + + .+....... .............++|+++||++|+++|
T Consensus 120 ~~~~~~~~~~~--------~-~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~rr~~~~~~~ 169 (169)
T PF00535_consen 120 DDNRYPDRRLR--------F-S----FWNRFERKI----FNNIRFWKISFFIGSCALFRRSVFEEIG 169 (169)
T ss_dssp CTTETEECCCT--------S-E----EEECCHCHH----HHTTHSTTSSEESSSCEEEEEHHHHHCH
T ss_pred CCccccccccc--------h-h----hhhhhhhHH----HHhhhcCCcccccccEEEEEHHHHHhhC
Confidence 22211111000 0 0 000000000 0112233455678899999999999987
No 102
>KOG2977|consensus
Probab=99.43 E-value=2.1e-12 Score=114.15 Aligned_cols=125 Identities=24% Similarity=0.270 Sum_probs=95.4
Q ss_pred CceEEEEEecCCC---hhHHHHHHHHHHhc--CCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC-CcEEEEEcCCCCCH
Q psy8674 269 PKASVILVFHNEG---FSSLMRTVHSIIKR--TPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIRNTEREGL 342 (439)
Q Consensus 269 p~vsiiip~~n~~---~~~l~~~l~sl~~q--~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~v~~i~~~~~~g~ 342 (439)
+.+|||||+||++ ...+.+|+.++... ..+++.+|||||||||+|.|.+ ++-++..++. .+++++...+|.|+
T Consensus 67 ~~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~-~a~k~s~K~~~d~irV~~l~~nrgK 145 (323)
T KOG2977|consen 67 MYLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVE-VALKFSRKLGDDNIRVIKLKKNRGK 145 (323)
T ss_pred ceeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHH-HHHHHHHHcCcceEEEeehhccCCC
Confidence 3799999999998 24456666666543 2345778999999999999988 8888875543 58999999999999
Q ss_pred HHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhc-----CCCEEEEeeeeee
Q psy8674 343 IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS-----DRKIMTVPVIDGI 394 (439)
Q Consensus 343 ~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~-----~~~~~v~~~~~~~ 394 (439)
+.|...|+-.++|++++|.|+|..-.-..++.|.+.+.+ ....++|+.....
T Consensus 146 GgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p~~r~~va~GsrahL 202 (323)
T KOG2977|consen 146 GGAVRKGMLSSRGQKILFADADGATKFADLEKLEKALNDKAGPGPRDDVACGSRAHL 202 (323)
T ss_pred CcceehhhHhccCceEEEEcCCCCccCCCHHHHHHHHHhhcCCCCCCceeecCHHHh
Confidence 999999999999999999999988654446666665542 2235566554333
No 103
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.43 E-value=2.3e-13 Score=117.48 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=90.0
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCe-Eeeeeeecc
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGI 80 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~-~v~~~~~~~ 80 (439)
+.+.+.++...++..+.++.+++|.|.+.|+|.|++.++|+|++|+|+|+.++|+||+.++..+.+++.. ++++.....
T Consensus 40 t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~ 119 (180)
T cd06423 40 TLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVR 119 (180)
T ss_pred hHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEe
Confidence 3455666665554467888889999999999999999999999999999999999999997777665544 444443332
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
.... ... ..........+.... ............+.|+++++||++|+++||||+.+. + |
T Consensus 120 ~~~~-~~~----------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~ggf~~~~~--~-e 179 (180)
T cd06423 120 NGSE-NLL----------TRLQAIEYLSIFRLG------RRAQSALGGVLVLSGAFGAFRREALREVGGWDEDTL--T-E 179 (180)
T ss_pred cCcC-cce----------eccchheecceeeee------eehhheecceeecCchHHHHHHHHHHHhCCccccCc--C-C
Confidence 2210 000 000000000000000 000011223345688999999999999999999974 3 7
Q ss_pred h
Q psy8674 161 N 161 (439)
Q Consensus 161 D 161 (439)
|
T Consensus 180 D 180 (180)
T cd06423 180 D 180 (180)
T ss_pred C
Confidence 6
No 104
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.41 E-value=7.6e-13 Score=121.51 Aligned_cols=172 Identities=15% Similarity=0.084 Sum_probs=108.0
Q ss_pred hHHHHHHHHhcCC----------cEEEEEe-----cCCCChhH-------HHHhhhhhccCcEEEEecCCcccCCCchHH
Q psy8674 3 DKKLEDYIERFNG----------KVRLIRN-----TEREGLIR-------TRSRGAKESRGEVIVFLDAHCEVGLNWLPP 60 (439)
Q Consensus 3 ~~~l~~~~~~~~~----------~i~~i~~-----~~n~G~a~-------arN~G~~~A~g~~i~flD~D~~~~~~~l~~ 60 (439)
.+.|+..+++.-| ++.+|-- +.|.|... +.|.|+..|+||||+++|+|+.++|+||+.
T Consensus 14 ~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d~~~gk~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~ 93 (244)
T cd04190 14 ARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIKKNRGKRDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQ 93 (244)
T ss_pred HHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCcccccCcchHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHH
Confidence 4556666665333 5666551 14556543 678999999999999999999999999999
Q ss_pred HHHHHhcCCCe-EeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEE
Q psy8674 61 LLAPIYSDRKI-MTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAM 139 (439)
Q Consensus 61 l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i 139 (439)
++..|..++.. ++++......... .... ....+.+.. .... .+........+..++|+++++
T Consensus 94 l~~~~~~~p~vg~v~g~~~~~~~~~-~~~~-------~~q~~ey~~--------~~~~-~~~~~s~~g~~~~~~G~~~~~ 156 (244)
T cd04190 94 LYKAMDKDPEIGGVCGEIHPMGKKQ-GPLV-------MYQVFEYAI--------SHWL-DKAFESVFGFVTCLPGCFSMY 156 (244)
T ss_pred HHHHHHhCCCEEEEEeeeEEcCCcc-hhHH-------HhHheehhh--------hhhh-cccHHHcCCceEECCCceEEE
Confidence 99999766654 4444433322100 0000 000000000 0000 000011112234568999999
Q ss_pred eHHHHHHhCCCCCCC----------C-------CccchhhHHHHHHHHhCCcEEE--ecccceeccccccc
Q psy8674 140 DRAFFLELGGYDPGL----------L-------VWGGENFELSFKIWMCGGSIEW--VPCSRIVSLIRPVF 191 (439)
Q Consensus 140 rr~~f~~iGgfde~~----------~-------~~~~ED~Dl~~Rl~~~G~~i~~--~p~~~v~H~~~~~~ 191 (439)
|+++++++|++...+ . ..-+||.+|++|+..+|+++.+ .|++.++......+
T Consensus 157 R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~a~~~~~~p~s~ 227 (244)
T cd04190 157 RIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKYLYVPGAVAETDVPETF 227 (244)
T ss_pred EehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEEEEecccEEEEECCCCH
Confidence 999999998875421 0 0125999999999999999999 99999887765543
No 105
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.38 E-value=1.3e-12 Score=115.59 Aligned_cols=128 Identities=21% Similarity=0.285 Sum_probs=83.5
Q ss_pred EEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccC
Q psy8674 43 VIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKY 122 (439)
Q Consensus 43 ~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (439)
||+++|+|+.++|++|+++++.++.+..+++.+.+......+. .. ....+.+.. .. ...+..
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~--~~-------~~~~~~~~~----~~-----~~~~~~ 62 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSL--LT-------RLQDFEYAI----SH-----GLSRLS 62 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCCh--hh-------eeehhhhhh----hh-----hhhHHH
Confidence 6899999999999999999999993334555444433211110 00 001111100 00 000001
Q ss_pred CCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674 123 NSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 123 ~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~ 190 (439)
.........++|+++++|+++++++|||| .....+ ||.|+++|+.++|+++.+.|++.++|...+.
T Consensus 63 ~~~~~~~~~~~G~~~~~r~~~l~~vg~~~-~~~~~~-ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t 128 (193)
T PF13632_consen 63 QSSLGRPLFLSGSGMLFRREALREVGGFD-DPFSIG-EDMDLGFRLRRAGYRIVYVPDAIVYTEAPPT 128 (193)
T ss_pred HHhcCCCccccCcceeeeHHHHHHhCccc-cccccc-chHHHHHHHHHCCCEEEEecccceeeeCCCC
Confidence 11122334568999999999999999999 444444 9999999999999999999999887775444
No 106
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.38 E-value=4.6e-12 Score=131.25 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=96.7
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHH-hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC--CCCH
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSII-KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGL 342 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~g~ 342 (439)
...|.+||+||+|||+ ..+.+++++++ .++||++ ||+++++++++.|.+ .++++.++++ +++++..+. +.|+
T Consensus 60 ~~~~~vsIlVPa~nE~-~vi~~~i~~ll~~ldYP~~--eI~vi~~~nD~~T~~-~~~~l~~~~p-~~~~v~~~~~g~~gK 134 (727)
T PRK11234 60 PDEKPLAIMVPAWNET-GVIGNMAELAATTLDYENY--HIFVGTYPNDPATQA-DVDAVCARFP-NVHKVVCARPGPTSK 134 (727)
T ss_pred CCCCCEEEEEecCcch-hhHHHHHHHHHHhCCCCCe--EEEEEecCCChhHHH-HHHHHHHHCC-CcEEEEeCCCCCCCH
Confidence 4568899999999999 99999999986 6899987 999999988888777 8999988886 566554444 7899
Q ss_pred HHHHHHHHhhc-------C--CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674 343 IRTRSRGAKES-------R--GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 389 (439)
Q Consensus 343 ~~a~n~g~~~a-------~--~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~ 389 (439)
+.|+|.|+..+ . .+.+++.|+|+.++|+.|. ++..+..+...+-+|
T Consensus 135 a~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p 189 (727)
T PRK11234 135 ADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIP 189 (727)
T ss_pred HHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeec
Confidence 99999999987 3 3568889999999999998 667776655444444
No 107
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.37 E-value=3.8e-12 Score=116.77 Aligned_cols=160 Identities=16% Similarity=0.068 Sum_probs=98.6
Q ss_pred HHHHHhcC--CcEEEEEecCCCCh-hHHHHhhhhh--ccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEee-eeeecc
Q psy8674 7 EDYIERFN--GKVRLIRNTEREGL-IRTRSRGAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGI 80 (439)
Q Consensus 7 ~~~~~~~~--~~i~~i~~~~n~G~-a~arN~G~~~--A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~-~~~~~~ 80 (439)
.+..++++ .+|++++.++|.|. +++.|.++.. +++|||+++|+|+.++|++|..++..+..++...++ +.....
T Consensus 57 ~~l~~~~~~~~~v~~~~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~ 136 (254)
T cd04191 57 LDLCEELGAQGRIYYRRRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLI 136 (254)
T ss_pred HHHHHHhCCCCcEEEEEcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeE
Confidence 33444443 58999999999887 4455555554 788999999999999999999999999877655432 222222
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCC--CCCCc-
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDP--GLLVW- 157 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde--~~~~~- 157 (439)
+...+-.. ...+... .+..... ............+.|+++++||+.|+++|+|.+ ++..|
T Consensus 137 n~~~~~~~---------~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~ 199 (254)
T cd04191 137 GAETLFAR---------LQQFANR------LYGPVFG--RGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFG 199 (254)
T ss_pred CCCCHHHH---------HHHHHHH------HHHHHHH--HHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCC
Confidence 21111000 0000000 0000000 000000012235679999999999999766543 11111
Q ss_pred ---cchhhHHHHHHHHhCCcEEEecccce
Q psy8674 158 ---GGENFELSFKIWMCGGSIEWVPCSRI 183 (439)
Q Consensus 158 ---~~ED~Dl~~Rl~~~G~~i~~~p~~~v 183 (439)
-.||+++++++..+||++.|.|.+..
T Consensus 200 ~~~l~eD~~l~~~~~~~G~ri~~~~~~~~ 228 (254)
T cd04191 200 GHILSHDFVEAALMRRAGWEVRLAPDLEG 228 (254)
T ss_pred CCeecHHHHHHHHHHHcCCEEEEccCCcc
Confidence 25999999999999999999998754
No 108
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.36 E-value=1.2e-11 Score=103.97 Aligned_cols=112 Identities=35% Similarity=0.490 Sum_probs=92.4
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 352 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~ 352 (439)
||||++|+. +.+..++.|+.++.+... ||+|+||++++.+.+ .+.++.... ..+..+....+.|.+.++|.++..
T Consensus 1 iii~~~~~~-~~l~~~l~s~~~~~~~~~--~i~i~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~ 75 (156)
T cd00761 1 VIIPAYNEE-PYLERCLESLLAQTYPNF--EVIVVDDGSTDGTLE-ILEEYAKKD-PRVIRVINEENQGLAAARNAGLKA 75 (156)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCccce--EEEEEeCCCCccHHH-HHHHHHhcC-CCeEEEEecCCCChHHHHHHHHHH
Confidence 689999999 999999999999987655 999999999988766 666665432 246667788899999999999999
Q ss_pred cCCCEEEEEcCCCccCCCChHHHHHhhhcCC-CEEEEe
Q psy8674 353 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVP 389 (439)
Q Consensus 353 a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~v~~ 389 (439)
+.+++++++|+|+.+.++++..++..+...+ ..++.+
T Consensus 76 ~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (156)
T cd00761 76 ARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG 113 (156)
T ss_pred hcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec
Confidence 9999999999999999999999855554444 444443
No 109
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.34 E-value=2.6e-11 Score=125.10 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=100.0
Q ss_pred CCCCceEEEEEecCCCh----hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHH---HHHHHHHHcC--CcEEEEEc
Q psy8674 266 LDLPKASVILVFHNEGF----SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQ---KLEDYIQRFN--GKVRLIRN 336 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~----~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~---~~~~~~~~~~--~~v~~i~~ 336 (439)
...|+++|+||+|||+. +.|+.+++|+.+|.+++ .+||+|+||++++++... .+.++.++++ .++.+.+.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~-~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R 199 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGA-HFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRR 199 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCC-CEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 45689999999999984 25889999999998764 349999999999886431 2345555553 36788776
Q ss_pred CCCCC-HHHHHHHHHhh--cCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeeecCCC
Q psy8674 337 TEREG-LIRTRSRGAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGIDYQT 398 (439)
Q Consensus 337 ~~~~g-~~~a~n~g~~~--a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~ 398 (439)
..|.| ++++.|.+++. +++||++++|+|..++++++.+++..++.++. ++|......++.++
T Consensus 200 ~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~s 265 (691)
T PRK05454 200 RRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGADT 265 (691)
T ss_pred CcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCCC
Confidence 66654 66777777887 56799999999999999999999999985554 56655555555555
No 110
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.29 E-value=5.8e-12 Score=108.81 Aligned_cols=143 Identities=17% Similarity=0.276 Sum_probs=94.9
Q ss_pred EEEEecCCCCh---hHHHHhhhhh-ccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCC
Q psy8674 18 RLIRNTEREGL---IRTRSRGAKE-SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEP 93 (439)
Q Consensus 18 ~~i~~~~n~G~---a~arN~G~~~-A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (439)
+++-.+...|. ....-.|+++ |++|+|+|+|+|+.++|+||..++..+++....+|.+.........+
T Consensus 5 ~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~-------- 76 (175)
T PF13506_consen 5 RLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGF-------- 76 (175)
T ss_pred EEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCH--------
Confidence 36666666665 3344456777 99999999999999999999999999997555555433222211111
Q ss_pred CCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCC
Q psy8674 94 DHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGG 173 (439)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~ 173 (439)
...+.-.+. ......... .....+..|.+|++||+.++++|||+.=-. +-+||+.|..+++++|+
T Consensus 77 ----~~~l~~~~~----~~~~~~~~a------~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~-~ladD~~l~~~~~~~G~ 141 (175)
T PF13506_consen 77 ----WSRLEAAFF----NFLPGVLQA------LGGAPFAWGGSMAFRREALEEIGGFEALAD-YLADDYALGRRLRARGY 141 (175)
T ss_pred ----HHHHHHHHH----hHHHHHHHH------hcCCCceecceeeeEHHHHHHcccHHHHhh-hhhHHHHHHHHHHHCCC
Confidence 000000000 000000000 113456789999999999999999988211 22599999999999999
Q ss_pred cEEEecccce
Q psy8674 174 SIEWVPCSRI 183 (439)
Q Consensus 174 ~i~~~p~~~v 183 (439)
++...|...+
T Consensus 142 ~v~~~~~~v~ 151 (175)
T PF13506_consen 142 RVVLSPYPVV 151 (175)
T ss_pred eEEEcchhee
Confidence 9999997644
No 111
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=99.24 E-value=1.1e-11 Score=90.97 Aligned_cols=58 Identities=36% Similarity=0.638 Sum_probs=44.9
Q ss_pred ccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCCcEEEecccce-eccc
Q psy8674 130 PTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRI-VSLI 187 (439)
Q Consensus 130 ~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v-~H~~ 187 (439)
+.+.|++++++|+.|.+||||||.|..||+||.||+.|+..+|.++...+...+ +|+.
T Consensus 17 ~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~~yh~~ 75 (78)
T PF02709_consen 17 PNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIGRYHLW 75 (78)
T ss_dssp TT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTTEEEEE
T ss_pred CCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCceEEEEEe
Confidence 466899999999999999999999999999999999999999999999877777 5776
No 112
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=99.24 E-value=7.5e-11 Score=103.36 Aligned_cols=137 Identities=19% Similarity=0.255 Sum_probs=94.2
Q ss_pred HHHHHHhcC--CcEEEEEecC--CCChhHHHHhhhhhcc----CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674 6 LEDYIERFN--GKVRLIRNTE--REGLIRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 77 (439)
Q Consensus 6 l~~~~~~~~--~~i~~i~~~~--n~G~a~arN~G~~~A~----g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 77 (439)
+..|+++.. -+|-||.-.. .+..|...|.|...|. .++++|-|-|..+..+++. ..+ .+.+..+.. .+
T Consensus 24 ~~~~L~rq~~~~~i~vi~Q~~~~~FNR~~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~--y~~-~~~p~H~s~-~~ 99 (219)
T cd00899 24 LHPFLQRQQLDYRIFVIEQVGNFRFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNL--YGC-EEGPRHLSV-PL 99 (219)
T ss_pred HHHHHHhcCCcEEEEEEEecCCccchhhhhhhHHHHHHhhcCCccEEEEecccccccCcccc--ccC-CCCCeEEEE-ee
Confidence 456776644 2566776333 3567889999998884 4789999999998887743 111 222211111 10
Q ss_pred ecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674 78 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW 157 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~ 157 (439)
. .+...+ +...+.||+++++|+.|.+|||||+.|..|
T Consensus 100 ~---------------------~~~~~l----------------------py~~~~Gg~~~~~k~~f~~VNGf~n~f~GW 136 (219)
T cd00899 100 D---------------------KFHYKL----------------------PYKTYFGGVLALTREQFRKVNGFSNAYWGW 136 (219)
T ss_pred c---------------------cccccc----------------------CcccccccceeeEHHHHHHhCCcCCcCccC
Confidence 0 011111 112457899999999999999999999999
Q ss_pred cchhhHHHHHHHHhCCcEEEecccc--eeccccc
Q psy8674 158 GGENFELSFKIWMCGGSIEWVPCSR--IVSLIRP 189 (439)
Q Consensus 158 ~~ED~Dl~~Rl~~~G~~i~~~p~~~--v~H~~~~ 189 (439)
|+||.||+.|+..+|.++...+... ..|++|.
T Consensus 137 GgEDdd~~~Rl~~~g~~~~r~~~~~~~~~hL~H~ 170 (219)
T cd00899 137 GGEDDDLYNRIKAAGLKITRPSGDTGRYKMIRHI 170 (219)
T ss_pred CcchHHHHHHHHHCCCeEEeccCcccceeeeecC
Confidence 9999999999999999999887654 3555553
No 113
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.23 E-value=4.7e-11 Score=118.94 Aligned_cols=160 Identities=17% Similarity=0.136 Sum_probs=98.3
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCC--CChhHHHHhhhhhc------cC---cEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTER--EGLIRTRSRGAKES------RG---EVIVFLDAHCEVGLNWLPPLLAPIYSDRK 70 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n--~G~a~arN~G~~~A------~g---~~i~flD~D~~~~~~~l~~l~~~~~~~~~ 70 (439)
|.+.+++..+++| +++++..+.+ .|.+.|.|.|++.+ +| |+|+++|+|++++|++|+.+...+. +.
T Consensus 110 T~~~v~~l~~~~p-~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~-~~- 186 (504)
T PRK14716 110 TLREVDRLAARYP-RVHLVIVPHDGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP-RH- 186 (504)
T ss_pred HHHHHHHHHHHCC-CeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC-CC-
Confidence 5667888888887 7876664433 35788999998754 56 9999999999999999998766553 22
Q ss_pred eEee-eeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHh--
Q psy8674 71 IMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL-- 147 (439)
Q Consensus 71 ~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~i-- 147 (439)
.++. +.. ....... ....+.+ +. .+.....+...............|.++++||++++++
T Consensus 187 ~~VQ~pv~-~~~~~~~---------~~~ag~y-~~------ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~ 249 (504)
T PRK14716 187 DFVQLPVF-SLPRDWG---------EWVAGTY-MD------EFAESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAA 249 (504)
T ss_pred CEEeccee-ccCCchh---------HHHHHHH-HH------HHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHh
Confidence 2222 221 1110000 0000000 00 0000000000000000111234688999999999998
Q ss_pred ---CC-CCCCCCCccchhhHHHHHHHHhCCcEEEeccccee
Q psy8674 148 ---GG-YDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIV 184 (439)
Q Consensus 148 ---Gg-fde~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~ 184 (439)
|+ ||++.- .||+|+++|+.++|+++.+.|.+..+
T Consensus 250 ~~GG~~fd~~sL---TED~dLglRL~~~G~rv~y~p~ai~~ 287 (504)
T PRK14716 250 ERGGQPFDSDSL---TEDYDIGLRLKRAGFRQIFVRVRADD 287 (504)
T ss_pred hcCCCCCCCCCc---chHHHHHHHHHHCCCEEEEecccccc
Confidence 43 998742 49999999999999999999988544
No 114
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.20 E-value=1.8e-11 Score=107.24 Aligned_cols=137 Identities=17% Similarity=0.131 Sum_probs=81.0
Q ss_pred HHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc-----CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674 6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR-----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI 80 (439)
Q Consensus 6 l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~-----g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 80 (439)
..+.++++...+.+...++|.|.+.|+|.|++.|+ |++|+|+|+|+.++|+||..+++.+.++.. ++.+.....
T Consensus 42 t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~-~v~g~~~~~ 120 (183)
T cd06438 42 TAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGAR-VVQAYYNSK 120 (183)
T ss_pred HHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCC-eeEEEEeee
Confidence 34455555534444445678999999999998774 999999999999999999999999986543 333222221
Q ss_pred cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674 81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E 160 (439)
.... .+......+...+.. .+.. .. . ........+.|+++++||++|++ |||++.-. .|
T Consensus 121 ~~~~----------~~~~~~~~~~~~~~~-~~~~-~~--~---~~~~~~~~~~G~~~~~rr~~l~~-~g~~~~~l---~E 179 (183)
T cd06438 121 NPDD----------SWITRLYAFAFLVFN-RLRP-LG--R---SNLGLSCQLGGTGMCFPWAVLRQ-APWAAHSL---TE 179 (183)
T ss_pred CCcc----------CHHHHHHHHHHHHHH-HHHH-HH--H---HHcCCCeeecCchhhhHHHHHHh-CCCCCCCc---cc
Confidence 1100 000000000000000 0000 00 0 00111224578899999999999 88987532 39
Q ss_pred hhHH
Q psy8674 161 NFEL 164 (439)
Q Consensus 161 D~Dl 164 (439)
|+||
T Consensus 180 D~~~ 183 (183)
T cd06438 180 DLEF 183 (183)
T ss_pred ccCC
Confidence 9875
No 115
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.19 E-value=2.6e-10 Score=116.96 Aligned_cols=120 Identities=9% Similarity=0.127 Sum_probs=91.2
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHH-hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC--CCHH
Q psy8674 267 DLPKASVILVFHNEGFSSLMRTVHSII-KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER--EGLI 343 (439)
Q Consensus 267 ~~p~vsiiip~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~--~g~~ 343 (439)
..|.+||+||+|||+ +.+.+++++++ .++||++ ||+|+....+.+|.+ .++++...+| +++++..+.+ .|++
T Consensus 69 ~~~~vsIlVPa~nE~-~VI~~~v~~ll~~ldYp~~--~I~v~~~~nD~~T~~-~~~~~~~~~p-~~~~v~~~~~gp~gKa 143 (703)
T PRK15489 69 DEQPLAIMVPAWKEY-DVIAKMIENMLATLDYRRY--VIFVGTYPNDAETIT-EVERMRRRYK-RLVRVEVPHDGPTCKA 143 (703)
T ss_pred CCCceEEEEeCCCcH-HHHHHHHHHHHhcCCCCCe--EEEEEecCCCccHHH-HHHHHhccCC-cEEEEEcCCCCCCCHH
Confidence 456899999999999 99999999976 7799977 999953222335555 7777776666 6777766554 7899
Q ss_pred HHHHHHHhhc-------CCCE--EEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674 344 RTRSRGAKES-------RGEV--IVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID 392 (439)
Q Consensus 344 ~a~n~g~~~a-------~~d~--i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 392 (439)
.|+|.|+..+ .+++ +++.|+|+.++|+.|..+ ..+...+..+.+|+..
T Consensus 144 ~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~~~iQ~pV~~ 200 (703)
T PRK15489 144 DCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRKDLVQLPVLS 200 (703)
T ss_pred HHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCcceeeeeecc
Confidence 9999999875 3334 899999999999999766 5555555555556554
No 116
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.12 E-value=6.2e-10 Score=93.38 Aligned_cols=101 Identities=31% Similarity=0.478 Sum_probs=83.6
Q ss_pred cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCe-EeeeeeecccCCCcccccccCCC
Q psy8674 16 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGIDYQTWEFRSVYEPD 94 (439)
Q Consensus 16 ~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~ 94 (439)
.+..+...++.|.+.++|.|+..+++++++++|+|+.+.|++++.++..+..++.. ++.+.
T Consensus 53 ~~~~~~~~~~~g~~~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------ 114 (156)
T cd00761 53 RVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP------------------ 114 (156)
T ss_pred CeEEEEecCCCChHHHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc------------------
Confidence 47777789999999999999999999999999999999999999986555544332 22100
Q ss_pred CccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCCc
Q psy8674 95 HHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGS 174 (439)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~~ 174 (439)
++++++++.|+++|+|++..+.+ +||.+++.++...|+.
T Consensus 115 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~ed~~~~~~~~~~g~~ 153 (156)
T cd00761 115 ----------------------------------------GNLLFRRELLEEIGGFDEALLSG-EEDDDFLLRLLRGGKV 153 (156)
T ss_pred ----------------------------------------chheeeHHHHHHhCCcchHhcCC-cchHHHHHHHHhhccc
Confidence 46899999999999999998754 5999999999988876
Q ss_pred E
Q psy8674 175 I 175 (439)
Q Consensus 175 i 175 (439)
+
T Consensus 154 ~ 154 (156)
T cd00761 154 A 154 (156)
T ss_pred c
Confidence 4
No 117
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.05 E-value=4.4e-10 Score=99.12 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=50.0
Q ss_pred CcEEEEEec---CCCChhHHHHhhhhhcc-----------CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674 15 GKVRLIRNT---EREGLIRTRSRGAKESR-----------GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 77 (439)
Q Consensus 15 ~~i~~i~~~---~n~G~a~arN~G~~~A~-----------g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 77 (439)
+++++++.. .|.|.+.|+|.|++.++ +++|+|+|+|+.++|+||+.+...+......++.+..
T Consensus 50 ~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~ 126 (191)
T cd06436 50 SRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRV 126 (191)
T ss_pred CcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeE
Confidence 489999753 57899999999999885 3799999999999999999988877633334444433
No 118
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.03 E-value=2.6e-09 Score=102.30 Aligned_cols=159 Identities=14% Similarity=0.080 Sum_probs=100.4
Q ss_pred hhHHHHHHHHhc--C-CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhc---CCCeEeee
Q psy8674 2 LDKKLEDYIERF--N-GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS---DRKIMTVP 75 (439)
Q Consensus 2 ~~~~l~~~~~~~--~-~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~---~~~~~v~~ 75 (439)
+.+.++++.+++ + .+++++.+++|.|.++|+|.|++.|+|+||+++|+|+..+++.+..+++.+.+ ++.+++++
T Consensus 121 T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~G 200 (333)
T PTZ00260 121 TLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFG 200 (333)
T ss_pred hHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEe
Confidence 456677777764 2 46999999999999999999999999999999999999999999999999874 44455554
Q ss_pred eeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhC--CCCCC
Q psy8674 76 VIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG--GYDPG 153 (439)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG--gfde~ 153 (439)
.......+.. . ......+....+...+ .. ..... ....-...+.-+++|++++.+= ...++
T Consensus 201 sR~~~~~~~~--~---~~~~~~r~~~~~~~~~--------l~--~~~~~--~~i~D~~~Gfk~~~r~~~~~i~~~~~~~~ 263 (333)
T PTZ00260 201 SRNHLVDSDV--V---AKRKWYRNILMYGFHF--------IV--NTICG--TNLKDTQCGFKLFTRETARIIFPSLHLER 263 (333)
T ss_pred eccccccCcc--c---ccCcHHHHHHHHHHHH--------HH--HHHcC--CCcccCCCCeEEEeHHHHHHHhhhccccC
Confidence 4322111100 0 0000010000010000 00 00000 1122223446789999998771 11223
Q ss_pred CCCccchhhHHHHHHHHhCCcEEEeccc
Q psy8674 154 LLVWGGENFELSFKIWMCGGSIEWVPCS 181 (439)
Q Consensus 154 ~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~ 181 (439)
+ .-|+|+.+++.+.|++|..+|-.
T Consensus 264 ~----~fd~Ell~~a~~~g~~I~EvPv~ 287 (333)
T PTZ00260 264 W----AFDIEIVMIAQKLNLPIAEVPVN 287 (333)
T ss_pred c----cchHHHHHHHHHcCCCEEEEcee
Confidence 2 25899999999999999999853
No 119
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.99 E-value=4.8e-09 Score=98.71 Aligned_cols=113 Identities=13% Similarity=0.210 Sum_probs=86.4
Q ss_pred eEEEEEecCCChhHHHHHHHHHHhc--CCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC----C-----
Q psy8674 271 ASVILVFHNEGFSSLMRTVHSIIKR--TPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE----R----- 339 (439)
Q Consensus 271 vsiiip~~n~~~~~l~~~l~sl~~q--~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~----~----- 339 (439)
+.|||.+||+. +.|.+||+||++| ....+ +|||++||+.+++.+ .++.+. ..++++.... +
T Consensus 2 ~PVlv~ayNRp-~~l~r~LesLl~~~p~~~~~--~liIs~DG~~~~~~~-~v~~~~----~~i~~i~~~~~~~~~~~~~~ 73 (334)
T cd02514 2 IPVLVIACNRP-DYLRRMLDSLLSYRPSAEKF--PIIVSQDGGYEEVAD-VAKSFG----DGVTHIQHPPISIKNVNPPH 73 (334)
T ss_pred cCEEEEecCCH-HHHHHHHHHHHhccccCCCc--eEEEEeCCCchHHHH-HHHhhc----cccEEEEcccccccccCccc
Confidence 56999999999 9999999999998 44455 999999999877655 555552 2466665422 2
Q ss_pred -----CCHHH----HHHHHHhhcCCCEEEEEcCCCccCCCCh---HHHHHhhhcCCCEEEEeee
Q psy8674 340 -----EGLIR----TRSRGAKESRGEVIVFLDAHCEVGLNWL---PPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 340 -----~g~~~----a~n~g~~~a~~d~i~~ld~D~~~~~~~l---~~l~~~~~~~~~~~v~~~~ 391 (439)
.+.+. |+|.++..+.++++++|++|+.+.|+++ ++++..++.++...+++..
T Consensus 74 ~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~ 137 (334)
T cd02514 74 KFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAW 137 (334)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEee
Confidence 12233 8999998889999999999999999955 7778888888776555443
No 120
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=98.96 E-value=3.9e-09 Score=109.78 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=97.5
Q ss_pred hhHHHHHHHHhcCCcEEEEEecC--CCChhHHHHhhhhhc-------cC--cEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTE--REGLIRTRSRGAKES-------RG--EVIVFLDAHCEVGLNWLPPLLAPIYSDRK 70 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~--n~G~a~arN~G~~~A-------~g--~~i~flD~D~~~~~~~l~~l~~~~~~~~~ 70 (439)
|.+.++++.+++| +++++.+++ |.|.+.|.|.|++.+ ++ +++++.|+|+.++|++|. +++.+....
T Consensus 107 T~~~~~~l~~~~p-~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~- 183 (727)
T PRK11234 107 TQADVDAVCARFP-NVHKVVCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERK- 183 (727)
T ss_pred HHHHHHHHHHHCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCC-
Confidence 5678889888897 787766565 789999999999987 33 568889999999999998 566665433
Q ss_pred eEe-eeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEE-eH--HHHHH
Q psy8674 71 IMT-VPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAM-DR--AFFLE 146 (439)
Q Consensus 71 ~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i-rr--~~f~~ 146 (439)
.++ ++.. ........... ..+...|.+ +....... +..... ...+.|..+++ || +++.+
T Consensus 184 ~~VQ~p~~-p~~~~~~~~~~-----~~~~~EFa~-----~~~~~~~~---~~~lgg---~~~l~G~~~af~Rr~l~al~~ 246 (727)
T PRK11234 184 DLIQIPVY-PFEREWTHFTS-----GTYIDEFAE-----LHGKDVPV---REALAG---QVPSAGVGTCFSRRAVTALLE 246 (727)
T ss_pred CeEeeccc-CCCccHHHHHH-----HHHHHHHHH-----HhhhhhHH---HHHcCC---CcccCCceEEEecccHHHHHH
Confidence 333 2211 10000000000 000001100 00000000 000011 12456888999 77 56888
Q ss_pred hC---CCCCCCCCccchhhHHHHHHHHhCCcEEEeccc
Q psy8674 147 LG---GYDPGLLVWGGENFELSFKIWMCGGSIEWVPCS 181 (439)
Q Consensus 147 iG---gfde~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~ 181 (439)
+| +|+++.- .||+|+++|+..+|+++.+.|..
T Consensus 247 ~ggg~~~~~~~l---TED~dlg~rL~~~G~~v~f~~~~ 281 (727)
T PRK11234 247 DGDGIAFDVQSL---TEDYDIGFRLKEKGMREIFVRFP 281 (727)
T ss_pred hcCCCCcCCCcc---hHHHHHHHHHHHCCCEEEEcccc
Confidence 88 6888763 39999999999999999999933
No 121
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=98.91 E-value=5.9e-09 Score=107.82 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=97.1
Q ss_pred HHHHHHhcC--CcEEEEEecCCCChhHHHHhh--hhh--ccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee-e
Q psy8674 6 LEDYIERFN--GKVRLIRNTEREGLIRTRSRG--AKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI-D 78 (439)
Q Consensus 6 l~~~~~~~~--~~i~~i~~~~n~G~a~arN~G--~~~--A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~-~ 78 (439)
+.+..++++ .+|.+.+.+.|.|. +|-|++ ++. +++||++.+|+|+.+++++|.+++..++.++...+.... .
T Consensus 181 ~~~L~~~~~~~~~i~yr~R~~n~~~-KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~ 259 (691)
T PRK05454 181 WLELRAELGGEGRIFYRRRRRNVGR-KAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPV 259 (691)
T ss_pred HHHHHHhcCCCCcEEEEECCcCCCc-cHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCcc
Confidence 445556653 48999988888876 444665 676 566999999999999999999999999877765443211 1
Q ss_pred cccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCC--CCCC
Q psy8674 79 GIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDP--GLLV 156 (439)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde--~~~~ 156 (439)
....+++-... ..|.-.. +. ......... .......+.|+|.++|++.|.++||+.+ +...
T Consensus 260 ~~n~~slfaR~---------qqf~~~~-y~------~~~~~G~~~-w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p 322 (691)
T PRK05454 260 AVGADTLFARL---------QQFATRV-YG------PLFAAGLAW-WQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGP 322 (691)
T ss_pred CcCCCCHHHHH---------HHHHHHH-HH------HHHHhhhhh-hccCccccccceEEEEHHHHHHhcCCccccccCC
Confidence 11111100000 0000000 00 000000000 0012234679999999999998876432 1111
Q ss_pred c----cchhhHHHHHHHHhCCcEEEecccc
Q psy8674 157 W----GGENFELSFKIWMCGGSIEWVPCSR 182 (439)
Q Consensus 157 ~----~~ED~Dl~~Rl~~~G~~i~~~p~~~ 182 (439)
+ -.||.+++.+++.+||++.+.|+..
T Consensus 323 ~~~~~LseD~~~a~~l~~~GyrV~~~pd~~ 352 (691)
T PRK05454 323 FGGHILSHDFVEAALMRRAGWGVWLAPDLP 352 (691)
T ss_pred CCCCcccHHHHHHHHHHHCCCEEEEcCccc
Confidence 1 1599999999999999999999953
No 122
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=98.77 E-value=2.6e-08 Score=102.48 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=94.7
Q ss_pred ChhHHHHHHHHhcCCcEEEEEecCC--CChhHHHHhhhhhc-------cCcE--EEEecCCcccCCCchHHHHHHHhcCC
Q psy8674 1 DLDKKLEDYIERFNGKVRLIRNTER--EGLIRTRSRGAKES-------RGEV--IVFLDAHCEVGLNWLPPLLAPIYSDR 69 (439)
Q Consensus 1 ~~~~~l~~~~~~~~~~i~~i~~~~n--~G~a~arN~G~~~A-------~g~~--i~flD~D~~~~~~~l~~l~~~~~~~~ 69 (439)
+|.+.+++..+++| ++++|..+.+ .|.+.|.|.|++.+ .++| ++..|+|+.++|+.|..+ ..+..++
T Consensus 114 ~T~~~~~~~~~~~p-~~~~v~~~~~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~ 191 (703)
T PRK15489 114 ETITEVERMRRRYK-RLVRVEVPHDGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRK 191 (703)
T ss_pred cHHHHHHHHhccCC-cEEEEEcCCCCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCc
Confidence 46677888888887 8888886655 78999999999886 4455 899999999999999876 4554444
Q ss_pred CeEeeeeeecccCCCcccccccCCCCccccccccccccccCC--CchHHHhhccCCCCCccCccccceEEEEeHHHHHHh
Q psy8674 70 KIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENE--LPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL 147 (439)
Q Consensus 70 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~i 147 (439)
..+-+|.... ....... ..+.+.-.+ ..++. ++.. ..... .+ .+.|...++||++++++
T Consensus 192 ~~iQ~pV~~~-~~~~~~~---------l~~~~~~Ef-a~~~~~~l~~r-----~~l~~--~i-pl~Gv~~~frr~aL~~l 252 (703)
T PRK15489 192 DLVQLPVLSL-ERKWYEW---------VAGTYMDEF-AEWHQKDLVVR-----ESLTG--TV-PSAGVGTCFSRRALLAL 252 (703)
T ss_pred ceeeeeeccC-CCccccH---------HHHHHHHHH-HHHhhhHHHHH-----HHcCC--ce-eccCcceeeeHHHHHHH
Confidence 3322222211 1110000 000000000 00111 1111 11111 22 25677889999999877
Q ss_pred ---C---CCCCCCCCccchhhHHHHHHHHhCCcEEE
Q psy8674 148 ---G---GYDPGLLVWGGENFELSFKIWMCGGSIEW 177 (439)
Q Consensus 148 ---G---gfde~~~~~~~ED~Dl~~Rl~~~G~~i~~ 177 (439)
| +|+.+-- -||+|+++|+.+.|++..+
T Consensus 253 ~~~gg~~~~n~~sL---TED~Dlg~RL~~~G~r~~f 285 (703)
T PRK15489 253 MKERGNQPFNTSSL---TEDYDFSFRLAELGMQEIF 285 (703)
T ss_pred HHhcCCCCCCCCCc---hHhHHHHHHHHHCCCceEE
Confidence 5 4665442 2999999999999999988
No 123
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.76 E-value=1.6e-08 Score=95.54 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=81.6
Q ss_pred ecCCCChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHHHHHhcCC-CeEeeeeeecccCCCcccccccCCCCcccc
Q psy8674 22 NTEREGLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQTWEFRSVYEPDHHYRG 99 (439)
Q Consensus 22 ~~~n~G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (439)
++.|.|.+.|+|.|++.|+||||+|+|+|+. ++|+||..+++.+..++ .+++.+.............. ..+
T Consensus 97 ~~~n~Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~-------~~~ 169 (306)
T PRK13915 97 LPPRPGKGEALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDA-------TGG 169 (306)
T ss_pred cccCCCHHHHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCc-------CCC
Confidence 4788999999999999999999999999997 89999999999997444 44554321110000000000 000
Q ss_pred ccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHH-hCC-cEEE
Q psy8674 100 IFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWM-CGG-SIEW 177 (439)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~-~G~-~i~~ 177 (439)
+........ .+..... .. ...+ ... .++.+++||++++++. |+++| | .|+++...+.. .|. ++..
T Consensus 170 gr~~~~~~~--~l~~~~~---~~-l~~i-~dp-~sG~~a~rr~~l~~l~-~~~~y---g-~e~~~l~~~~~~~g~~~i~~ 236 (306)
T PRK13915 170 GRVTELVAR--PLLNLLR---PE-LAGF-VQP-LGGEYAGRRELLESLP-FVPGY---G-VEIGLLIDTLDRLGLDAIAQ 236 (306)
T ss_pred CchHHHHHH--HHHHHHH---Hh-hhcc-cCc-chHhHHHHHHHHHhCC-CCCCC---e-ehHHHHHHHHHHhCcCceEE
Confidence 000000000 0000000 00 0011 112 3446899999999995 77764 3 69999999875 576 6666
Q ss_pred ec
Q psy8674 178 VP 179 (439)
Q Consensus 178 ~p 179 (439)
++
T Consensus 237 V~ 238 (306)
T PRK13915 237 VD 238 (306)
T ss_pred EE
Confidence 55
No 124
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=98.74 E-value=6.4e-08 Score=92.42 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=61.2
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeee
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 75 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 75 (439)
+.+.++++.++..++++++.++.|.|.++|.|.|++.|+||+++++|+|+..+|+++..+++.++++ .++|++
T Consensus 52 T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~-~DvV~~ 124 (325)
T PRK10714 52 SAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEG-YDVVGT 124 (325)
T ss_pred HHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhh-CCEEEE
Confidence 4566777666544578888889999999999999999999999999999999999999999999754 345543
No 125
>KOG3588|consensus
Probab=98.69 E-value=7.4e-08 Score=88.36 Aligned_cols=167 Identities=19% Similarity=0.223 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcE-EEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCC
Q psy8674 5 KLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEV-IVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQ 83 (439)
Q Consensus 5 ~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~-i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~ 83 (439)
.+..+..+++ +++.+....-+..+.|.-.|++.-+.+. +.|+|-|..++.++|+....--. ...-+-.|.+......
T Consensus 278 ~~tslra~f~-~~q~l~lngeFSRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~Nt~-~gkqiyfPivFS~ynp 355 (494)
T KOG3588|consen 278 TITSLRASFI-PVQFLGLNGEFSRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLNTI-LGKQIYFPIVFSQYNP 355 (494)
T ss_pred HHHHHhhcCC-ceEEecccchhhhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHhhccC-CCceEEEEEEEeecCc
Confidence 3456666775 6766665555667788889998886655 55679999999999887643222 1223334444332222
Q ss_pred CcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhH
Q psy8674 84 TWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFE 163 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~D 163 (439)
..-+. . ....| .+..........+.-.+-- +..+.-|+.|..|||||..+..||+||+|
T Consensus 356 ~ivy~-~------------------~~~~p-~e~~~~~~~~tGfwRdfGf-Gmtc~yrsd~~~vgGFD~~I~GWG~EDV~ 414 (494)
T KOG3588|consen 356 EIVYE-Q------------------DKPLP-AEQQLVIKKDTGFWRDFGF-GMTCQYRSDFLTVGGFDMEIKGWGGEDVD 414 (494)
T ss_pred ceeec-C------------------CCCCc-hhHheeeccccccccccCC-ceeEEeeccceeecCcceeeeccCcchHH
Confidence 11110 0 00011 1110000000111111111 23467899999999999999999999999
Q ss_pred HHHHHHHhCCcEEEecccceecccccccccC
Q psy8674 164 LSFKIWMCGGSIEWVPCSRIVSLIRPVFKAD 194 (439)
Q Consensus 164 l~~Rl~~~G~~i~~~p~~~v~H~~~~~~~~~ 194 (439)
|.-+..+.|.++.-.|+.-+.|++|+..-.+
T Consensus 415 Ly~K~v~~~l~viR~p~pGl~H~~H~~~C~~ 445 (494)
T KOG3588|consen 415 LYRKYVHSGLKVIRTPEPGLFHLWHPKRCDD 445 (494)
T ss_pred HHHHHHhcCcEEEecCCCceEEeecccccCC
Confidence 9999999999999999999999999987655
No 126
>KOG2547|consensus
Probab=98.64 E-value=5.6e-07 Score=83.09 Aligned_cols=118 Identities=16% Similarity=0.303 Sum_probs=101.7
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCC-cEEEEEcCCCCCHH--
Q psy8674 267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREGLI-- 343 (439)
Q Consensus 267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~v~~i~~~~~~g~~-- 343 (439)
++|.||||.|..+-+ +.+...++|.....|+.+ |++.+-+.++|+..+ .++++.+++|. ..+++...+..|.+
T Consensus 83 ~LPgVSiikPl~G~d-~nl~~Nlesffts~Y~~~--ElLfcv~s~eDpAi~-vv~~Ll~kyp~VdAklf~gG~~vg~npK 158 (431)
T KOG2547|consen 83 KLPGVSIIKPLKGVD-PNLYHNLESFFTSQYHKY--ELLFCVESSEDPAIE-VVERLLKKYPNVDAKLFFGGEKVGLNPK 158 (431)
T ss_pred CCCCceEEeecccCC-chhHHhHHHHHhhccCce--EEEEEEccCCCcHHH-HHHHHHhhCCCcceEEEEcccccccChh
Confidence 689999999999999 999999999999999966 999999999999888 99999999973 45677677766644
Q ss_pred -HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674 344 -RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 388 (439)
Q Consensus 344 -~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 388 (439)
.+.--|.+.|+.|+|++.|+|..+.|+.+..|...+.+++....+
T Consensus 159 InN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalv 204 (431)
T KOG2547|consen 159 INNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALV 204 (431)
T ss_pred hhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeee
Confidence 344458889999999999999999999999999999988874433
No 127
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=5.6e-07 Score=79.18 Aligned_cols=152 Identities=18% Similarity=0.255 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCCh---hHHHHhhhhhcc----CcEEEEecCCcccCCCchHHHHHHHh-----cCC-C
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGL---IRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLLAPIY-----SDR-K 70 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~---a~arN~G~~~A~----g~~i~flD~D~~~~~~~l~~l~~~~~-----~~~-~ 70 (439)
..+..|+...+ ++-++.......+ +..+|.|+..|- .++|+|||.||..+.+-.++++..+. .+- +
T Consensus 52 ~~i~~~i~~~~-~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a 130 (346)
T COG4092 52 RLIRSYIDPMP-RVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDA 130 (346)
T ss_pred HHHHHHhcccc-ceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCc
Confidence 45677887776 8888875443333 568999998886 89999999999998655555554332 221 2
Q ss_pred eEeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCC
Q psy8674 71 IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGY 150 (439)
Q Consensus 71 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgf 150 (439)
-.+.|....-...+... ......-|..... ...-........+-.+. ..+.+++.|..|-..||+
T Consensus 131 ~~vlPV~~LNk~~~~v~--------f~~~d~f~d~~i~------es~~~~~~~~~~ff~~~-~T~~~liN~~~F~~tgGy 195 (346)
T COG4092 131 PLVLPVYHLNKADTQVF--------FDVEDMFLDAMIF------ESPLAEFRKEDNFFIAP-YTNIFLINRRMFSLTGGY 195 (346)
T ss_pred ceeeeeeecchhhhhHH--------HHHHHHhhhhHhh------hhHHHHhCccccccccc-ccceEEEehhHHHHhcCC
Confidence 23333321100000000 0000011111100 00000011111122222 344689999999999999
Q ss_pred CCCCCCccchhhHHHHHHHHh
Q psy8674 151 DPGLLVWGGENFELSFKIWMC 171 (439)
Q Consensus 151 de~~~~~~~ED~Dl~~Rl~~~ 171 (439)
||+|..+|+||.|+.-|+...
T Consensus 196 dE~F~GhG~EDfe~~~R~~l~ 216 (346)
T COG4092 196 DERFRGHGSEDFEFLTRLGLY 216 (346)
T ss_pred ccccccCCchhHHHHHHHHHH
Confidence 999999999999999998654
No 128
>KOG2978|consensus
Probab=98.51 E-value=1.2e-06 Score=73.18 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=105.5
Q ss_pred hHHHHHHHHhcC-CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674 3 DKKLEDYIERFN-GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 81 (439)
Q Consensus 3 ~~~l~~~~~~~~-~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 81 (439)
.+.+++..+-+. ++|.++......|++.|.-.|+.+|+|+|++.+|+|.--+|.++..+++...+..-+++.+....
T Consensus 50 ~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa-- 127 (238)
T KOG2978|consen 50 QEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYA-- 127 (238)
T ss_pred HHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEc--
Confidence 344555544444 68999998889999999999999999999999999999999999999999887765666443222
Q ss_pred CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCC--CCCCCCCccc
Q psy8674 82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGG--YDPGLLVWGG 159 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGg--fde~~~~~~~ 159 (439)
+ ..|.+.|.+..+ -+....... ........+.-++|++-+.+|++++..-- -..+|.
T Consensus 128 -------~-------~ggV~gW~mkRk--~IS~gAn~l-a~~ll~~~~sdltGsFrLykk~vl~~li~e~vSkGyv---- 186 (238)
T KOG2978|consen 128 -------G-------GGGVYGWDMKRK--IISRGANFL-ARILLNPGVSDLTGSFRLYKKEVLEKLIEESVSKGYV---- 186 (238)
T ss_pred -------C-------CCceecchhhHH--HHhhhhHHH-HHHhccCCCccCcceeeeehHHHHHhhHHHhhccchh----
Confidence 1 013344544222 111111100 00011112345678889999999876521 122332
Q ss_pred hhhHHHHHHHHhCCcEEEeccccee
Q psy8674 160 ENFELSFKIWMCGGSIEWVPCSRIV 184 (439)
Q Consensus 160 ED~Dl~~Rl~~~G~~i~~~p~~~v~ 184 (439)
=-.|+..|+.+.||.|-.+|-+.+.
T Consensus 187 fqmEll~ra~~~~y~IgEvPitFvd 211 (238)
T KOG2978|consen 187 FQMELLARARQHGYTIGEVPITFVD 211 (238)
T ss_pred hhHHHHHhccccCceEeecceEEEe
Confidence 2568999999999999988866544
No 129
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=98.48 E-value=2.4e-06 Score=85.95 Aligned_cols=168 Identities=15% Similarity=0.221 Sum_probs=113.0
Q ss_pred hHHHHHHHHhcC-CcEEEEEec-CCCChhHHHHhhhhhcc-CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeec
Q psy8674 3 DKKLEDYIERFN-GKVRLIRNT-EREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG 79 (439)
Q Consensus 3 ~~~l~~~~~~~~-~~i~~i~~~-~n~G~a~arN~G~~~A~-g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~ 79 (439)
++.++++.++++ .+|++|... +++-.++|.+.|++... .++++|+|.|+.+++++|..+...-..+ .-+..|..-.
T Consensus 301 k~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g-~qvy~PI~Fs 379 (499)
T PF05679_consen 301 KELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPG-KQVYFPIVFS 379 (499)
T ss_pred HHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcC-cEEEEeeecc
Confidence 457778888876 689999988 88889999999998654 5788888999999999999886543322 2233343322
Q ss_pred ccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHh--CCCCCCCCCc
Q psy8674 80 IDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL--GGYDPGLLVW 157 (439)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~i--Ggfde~~~~~ 157 (439)
.......+.. .......+.. . ......+ ...-+.+++=++.|.++ ||||.....|
T Consensus 380 ~y~p~~~~~~----~~~~~~~~~i----~-------------~~~G~w~--~~gfg~~~~YksDy~~~~~~~~~~~~~gw 436 (499)
T PF05679_consen 380 QYNPDIVYAG----KPPEPDQFDI----S-------------KDTGFWR--RFGFGMVCFYKSDYMRIRGGGFDLSIRGW 436 (499)
T ss_pred ccCCcccccC----CCCccccCcc----C-------------CCCCccc--cCCCceEEEEhhhhhhhcccccccccccc
Confidence 1111110000 0000000000 0 0000000 01123578899999999 9999999999
Q ss_pred cchhhHHHHHHHHhC--CcEEEecccceecccccccccC
Q psy8674 158 GGENFELSFKIWMCG--GSIEWVPCSRIVSLIRPVFKAD 194 (439)
Q Consensus 158 ~~ED~Dl~~Rl~~~G--~~i~~~p~~~v~H~~~~~~~~~ 194 (439)
|+||+||.-++.+.| .+|.-.++.-+.|.+|+..-..
T Consensus 437 g~ED~~l~~~~l~~~~~l~V~Ra~ep~L~h~yh~~~C~~ 475 (499)
T PF05679_consen 437 GGEDVDLYDKFLKSGHKLHVFRAVEPGLVHRYHPKHCDP 475 (499)
T ss_pred cccHHHHHHHHHhCCCceEEEEccCCCeEEEecccCCCC
Confidence 999999999999999 8999999999999988765543
No 130
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=98.31 E-value=1.4e-06 Score=79.21 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=54.3
Q ss_pred HHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674 6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 70 (439)
Q Consensus 6 l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~ 70 (439)
..+.++++ +++++.. .|.|+++|+|.|+..|+|+||+++|+|..++|++++.+.+.+++++.
T Consensus 40 t~~i~~~~--~~~v~~~-~~~g~~~~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 40 TVEIAKEY--GAKVYQR-WWDGFGAQRNFALELATNDWVLSLDADERLTPELADEILALLATDDY 101 (229)
T ss_pred HHHHHHHc--CCEEEEC-CCCChHHHHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCC
Confidence 34555555 4888886 89999999999999999999999999999999999999999987664
No 131
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.24 E-value=3.4e-06 Score=75.52 Aligned_cols=91 Identities=19% Similarity=0.313 Sum_probs=63.3
Q ss_pred eEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674 271 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGA 350 (439)
Q Consensus 271 vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~ 350 (439)
||||+++.| + +.+.+|+.+|.++..++. |+|-|++-. ...+.+.+.|.|+
T Consensus 1 isiI~c~n~-~-~~~~~~~~~i~~~~~~~~--~~i~i~~~~--------------------------~~~s~~~~yN~a~ 50 (217)
T PF13712_consen 1 ISIIICVND-E-ELYEECLRSIKRLIGPPG--ELIEIDNVR--------------------------NAKSMAAAYNEAM 50 (217)
T ss_dssp EEEEEEES--H-HHHHHHHHHHHHTT--TE--EEEEEE-SS--------------------------S-S-TTTHHHHHG
T ss_pred CEEEEEECC-H-HHHHHHHHHHHhhCCCCc--eEEEEeccC--------------------------CCcCHHHHHHHHH
Confidence 455555544 4 788999999999877765 777665432 2245778999999
Q ss_pred hhcCCCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEeee
Q psy8674 351 KESRGEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 351 ~~a~~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
+.|+++|++|+++|..+ .++|+..+++.+++++...++++.
T Consensus 51 ~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGva 92 (217)
T PF13712_consen 51 EKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVA 92 (217)
T ss_dssp GG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESE
T ss_pred HhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEee
Confidence 99999999999999998 589999999999776765444443
No 132
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=98.21 E-value=8.8e-06 Score=77.32 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=108.7
Q ss_pred CcEEEEEec--CCCChhHHHHhhhhhccC-cEEEEecCCcccCCCchHHHHHHHhcC--CCeEeeeeeecccCCCccccc
Q psy8674 15 GKVRLIRNT--EREGLIRTRSRGAKESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSD--RKIMTVPVIDGIDYQTWEFRS 89 (439)
Q Consensus 15 ~~i~~i~~~--~n~G~a~arN~G~~~A~g-~~i~flD~D~~~~~~~l~~l~~~~~~~--~~~~v~~~~~~~~~~~~~~~~ 89 (439)
.+|++++.+ +-.|...||+++.+.=+| +|++-+|+.+++.++|=+.+++-+..- +..+.+.....+....-....
T Consensus 88 ~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~~~~~~~~~~~ 167 (343)
T PF11397_consen 88 DQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPGYEPDGGQPEP 167 (343)
T ss_pred CeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCCcccccCCccc
Confidence 467777654 568999999999998887 899999999999999999999988863 333443222222210000000
Q ss_pred ccC-CCCccccccccccccccCCCchHH---HhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCC-CCccchhhHH
Q psy8674 90 VYE-PDHHYRGIFEWGMLYKENELPERE---AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGL-LVWGGENFEL 164 (439)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~-~~~~~ED~Dl 164 (439)
... ........+ ...++.... .........|...++..+++++-+-++..+| .||+.+ +++.+||+-+
T Consensus 168 ~~~~~~~lc~~~~------~~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eV-P~DP~lp~lF~GEE~~~ 240 (343)
T PF11397_consen 168 EKTTVPRLCAARF------GPDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREV-PYDPHLPFLFDGEEISM 240 (343)
T ss_pred cCCcccEEEEeEE------CCCCcEeecceecccccccCCCeeeceecccEEEcchhheecC-CCCCCcccccccHHHHH
Confidence 000 000000111 111111110 0111122356677777777777777777777 599988 2233599999
Q ss_pred HHHHHHhCCcEEEecccceeccccccccc
Q psy8674 165 SFKIWMCGGSIEWVPCSRIVSLIRPVFKA 193 (439)
Q Consensus 165 ~~Rl~~~G~~i~~~p~~~v~H~~~~~~~~ 193 (439)
+.|+|..||.++.-+...++|.+....+.
T Consensus 241 aaRlwT~GYD~Y~P~~~v~~H~Y~r~~~p 269 (343)
T PF11397_consen 241 AARLWTHGYDFYSPTRNVLFHLYSRSKRP 269 (343)
T ss_pred HHHHHHcCCccccCCCceeEEEccCCCCC
Confidence 99999999999999999999998764443
No 133
>KOG3916|consensus
Probab=98.00 E-value=1.2e-05 Score=73.59 Aligned_cols=127 Identities=18% Similarity=0.320 Sum_probs=81.3
Q ss_pred HHHHHHh--cCCcEEEEEecCCC--ChhHHHHhhhhhccC----cEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674 6 LEDYIER--FNGKVRLIRNTERE--GLIRTRSRGAKESRG----EVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 77 (439)
Q Consensus 6 l~~~~~~--~~~~i~~i~~~~n~--G~a~arN~G~~~A~g----~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 77 (439)
|-.++++ ..-+|-||+--.|. ..|.-.|.|...|-- |-++|-|-|..+..|- ..-.|+..
T Consensus 173 LhP~LqrQrL~y~iyVieQ~g~~~FNRakL~NVGf~eAlkd~~wdCfIFHDVDllPenDr------------NlY~C~~~ 240 (372)
T KOG3916|consen 173 LHPFLQRQRLDYRIYVIEQAGNKPFNRAKLLNVGFLEALKDYGWDCFIFHDVDLLPENDR------------NLYGCPEQ 240 (372)
T ss_pred hhHHHHhhhhceeEEEEEecCCCcccHHHhhhhHHHHHHHhcCCCEEEEecccccccCCC------------CccCCCCC
Confidence 3445543 11368788744444 457778999988854 5588888888775542 11111111
Q ss_pred ecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674 78 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW 157 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~ 157 (439)
. .+.. .....+.+.+. ...+-|+..++.++-|.+|.||...|..|
T Consensus 241 P-------RH~s------va~dk~gy~LP----------------------Y~~~FGGVsalt~~qf~kINGFsN~fWGW 285 (372)
T KOG3916|consen 241 P-------RHMS------VALDKFGYRLP----------------------YKEYFGGVSALTKEQFRKINGFSNAFWGW 285 (372)
T ss_pred C-------cchh------hhhhhcccccc----------------------chhhhCchhhccHHHHHHhcCCCchhccc
Confidence 0 0000 00111222211 12446788899999999999999999999
Q ss_pred cchhhHHHHHHHHhCCcEEEec
Q psy8674 158 GGENFELSFKIWMCGGSIEWVP 179 (439)
Q Consensus 158 ~~ED~Dl~~Rl~~~G~~i~~~p 179 (439)
|+||-|+.-|+..+|++|---|
T Consensus 286 GGEDDDl~nRv~~ag~~IsRp~ 307 (372)
T KOG3916|consen 286 GGEDDDLWNRVQLAGMKISRPP 307 (372)
T ss_pred CCcchHHHHHHHhcCceeecCC
Confidence 9999999999999999975433
No 134
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=97.89 E-value=9.9e-05 Score=57.04 Aligned_cols=82 Identities=20% Similarity=0.110 Sum_probs=56.6
Q ss_pred cCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCC---H-HHHHHHHHhh-
Q psy8674 278 HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG---L-IRTRSRGAKE- 352 (439)
Q Consensus 278 ~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g---~-~~a~n~g~~~- 352 (439)
+|+. ..|.+.|......... .|+|+||||+|+|.+ +++++ + .+.++....... . ...++...+.
T Consensus 1 rne~-~~L~~wl~~~~~lG~d----~i~i~d~~s~D~t~~-~l~~~----~-~v~i~~~~~~~~~~~~~~~~~~~~~~~~ 69 (97)
T PF13704_consen 1 RNEA-DYLPEWLAHHLALGVD----HIYIYDDGSTDGTRE-ILRAL----P-GVGIIRWVDPYRDERRQRAWRNALIERA 69 (97)
T ss_pred CChH-HHHHHHHHHHHHcCCC----EEEEEECCCCccHHH-HHHhC----C-CcEEEEeCCCccchHHHHHHHHHHHHhC
Confidence 4777 8899999988765432 799999999999977 77765 2 466665544332 1 2233333333
Q ss_pred cCCCEEEEEcCCCccCCC
Q psy8674 353 SRGEVIVFLDAHCEVGLN 370 (439)
Q Consensus 353 a~~d~i~~ld~D~~~~~~ 370 (439)
..++|++++|+|..+.+.
T Consensus 70 ~~~dWvl~~D~DEfl~~~ 87 (97)
T PF13704_consen 70 FDADWVLFLDADEFLVPP 87 (97)
T ss_pred CCCCEEEEEeeeEEEecC
Confidence 468999999999987543
No 135
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=97.85 E-value=0.00025 Score=70.96 Aligned_cols=123 Identities=14% Similarity=0.115 Sum_probs=80.7
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCC-----ChhhHHHHHHHHHHH------------c----
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFS-----SKADLDQKLEDYIQR------------F---- 327 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s-----~d~t~~~~~~~~~~~------------~---- 327 (439)
+.+-..||||||..+.|+++|+||..++|++..-=|+||.||- .+.+..+++-+.... +
T Consensus 25 ~~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (527)
T PF03142_consen 25 KFVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSYVSLG 104 (527)
T ss_pred ceEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcceEEec
Confidence 3466789999998799999999999999997665677777762 233333355444330 0
Q ss_pred -------------------C------------CcEEEEE----------cCCCCCHHHHHHH------------------
Q psy8674 328 -------------------N------------GKVRLIR----------NTEREGLIRTRSR------------------ 348 (439)
Q Consensus 328 -------------------~------------~~v~~i~----------~~~~~g~~~a~n~------------------ 348 (439)
. +-+.+++ .+.|.|+--..-.
T Consensus 105 ~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~~~~~~~ 184 (527)
T PF03142_consen 105 EGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNNPMTPLE 184 (527)
T ss_pred cCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCCCCchHH
Confidence 0 0122333 2556663211111
Q ss_pred -----------HHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeee
Q psy8674 349 -----------GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVI 391 (439)
Q Consensus 349 -----------g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~ 391 (439)
|+.....||++.+|+|+.+.|+.+..|+..+.+++. +.+|+..
T Consensus 185 ~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t 239 (527)
T PF03142_consen 185 LELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGET 239 (527)
T ss_pred HHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEecee
Confidence 122233689999999999999999999999987666 6666654
No 136
>PLN02893 Cellulose synthase-like protein
Probab=97.79 E-value=0.00016 Score=74.47 Aligned_cols=53 Identities=8% Similarity=0.010 Sum_probs=46.1
Q ss_pred CcEEEEEecCCCC-----hhHHHHhhhhh----ccCcEEEEecCCccc-CCCchHHHHHHHhc
Q psy8674 15 GKVRLIRNTEREG-----LIRTRSRGAKE----SRGEVIVFLDAHCEV-GLNWLPPLLAPIYS 67 (439)
Q Consensus 15 ~~i~~i~~~~n~G-----~a~arN~G~~~----A~g~~i~flD~D~~~-~~~~l~~l~~~~~~ 67 (439)
|.+.++..+++.| .|+|.|.+++. +.|+||+.+|+|..+ .|++|.+.+-.+.+
T Consensus 264 P~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~D 326 (734)
T PLN02893 264 PNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLD 326 (734)
T ss_pred CceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcC
Confidence 4899999888743 69999999995 789999999999997 68999999988874
No 137
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.72 E-value=0.00085 Score=61.01 Aligned_cols=120 Identities=17% Similarity=0.174 Sum_probs=83.4
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCC--hhhHHHHHHHHHHHcC---------CcEEEE
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS--KADLDQKLEDYIQRFN---------GKVRLI 334 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~---------~~v~~i 334 (439)
...++|-|++|..|.+ .++..-++.|...+||...+.+-++.+.++ |.+.+ .+++..++.. ..++++
T Consensus 22 ~~~e~VLILtplrna~-~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~-~l~~~~~~~q~~~~~~~~F~~itIl 99 (269)
T PF03452_consen 22 RNKESVLILTPLRNAA-SFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLK-ILEAALKKLQSHGPESKRFRSITIL 99 (269)
T ss_pred ccCCeEEEEEecCCch-HHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHH-HHHHHHHHHhccCcccCCcceEEEE
Confidence 3557899999999999 999999999999999987667744445555 56655 6665543321 157776
Q ss_pred EcCCCC--C------------------HHHHHHHHHhhcC---CCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEee
Q psy8674 335 RNTERE--G------------------LIRTRSRGAKESR---GEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPV 390 (439)
Q Consensus 335 ~~~~~~--g------------------~~~a~n~g~~~a~---~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~ 390 (439)
+.+-.. | .+.++|..+-.+- .+|++++|+|..- +++.|+.| ..++..+++|.
T Consensus 100 ~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dl----i~~~kdIivPn 175 (269)
T PF03452_consen 100 RKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDL----IAHDKDIIVPN 175 (269)
T ss_pred cCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHH----HhCCCCEEccc
Confidence 543211 1 5677888776654 5899999999995 45544444 45667777776
Q ss_pred e
Q psy8674 391 I 391 (439)
Q Consensus 391 ~ 391 (439)
+
T Consensus 176 ~ 176 (269)
T PF03452_consen 176 C 176 (269)
T ss_pred e
Confidence 5
No 138
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=97.64 E-value=0.00021 Score=67.61 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=74.8
Q ss_pred HHHhhhhhccCcEEEEecCCcccCCCch---HHHHHHHhcCCCeEeeeeeecccCCCcccccccCCCCcccccccccccc
Q psy8674 31 TRSRGAKESRGEVIVFLDAHCEVGLNWL---PPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY 107 (439)
Q Consensus 31 arN~G~~~A~g~~i~flD~D~~~~~~~l---~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (439)
|+|.++..++++++++|+.|+.+.|+++ +.++..++.++....+..... ....... .
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd---nG~~~~~---------~-------- 147 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND---NGKEHFV---------D-------- 147 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc---CCccccc---------C--------
Confidence 9999999999999999999999999955 777777777776544322110 0000000 0
Q ss_pred ccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHH--HHhCCcEEEecccceec
Q psy8674 108 KENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKI--WMCGGSIEWVPCSRIVS 185 (439)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl--~~~G~~i~~~p~~~v~H 185 (439)
......+++.++.|..+|++|+.|+++ ++.+.. -|+|+.+|+ .++|-.+..---++.+|
T Consensus 148 -------------~~~~~lyrs~ff~glGWml~r~~W~e~---~~~wp~---~~WD~w~R~~~~rkgr~cirPeisRt~~ 208 (334)
T cd02514 148 -------------DTPSLLYRTDFFPGLGWMLTRKLWKEL---EPKWPK---AFWDDWMRLPEQRKGRECIRPEISRTYH 208 (334)
T ss_pred -------------CCcceEEEecCCCchHHHHHHHHHHHh---CCCCCC---CChHHhhcchhhhcCCccccCCcchhee
Confidence 001122344566677789999999997 665532 599999997 44454433333344455
Q ss_pred cc
Q psy8674 186 LI 187 (439)
Q Consensus 186 ~~ 187 (439)
..
T Consensus 209 ~g 210 (334)
T cd02514 209 FG 210 (334)
T ss_pred cc
Confidence 54
No 139
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=97.45 E-value=0.0003 Score=60.75 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=52.7
Q ss_pred EEEcCCCC---CHHHHHHHHHhh-cCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCC
Q psy8674 333 LIRNTERE---GLIRTRSRGAKE-SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQT 398 (439)
Q Consensus 333 ~i~~~~~~---g~~~a~n~g~~~-a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~ 398 (439)
++..+... ++..++..+++. +++|+++++|+|..++|++|..|+..++++..++|+......+.++
T Consensus 6 lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~ 75 (175)
T PF13506_consen 6 LVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARG 75 (175)
T ss_pred EEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcC
Confidence 44444443 367778888898 9999999999999999999999999999988888876655555554
No 140
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=97.44 E-value=0.0017 Score=59.51 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=96.2
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc-------CCC--C
Q psy8674 270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN-------TER--E 340 (439)
Q Consensus 270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~-------~~~--~ 340 (439)
..+-.|-+.||. .+|++||+|++... .|.||.=|.|+|+|.+ ++.++++.+|.-+.+... ++. -
T Consensus 88 ~~~~~iRvKnE~-~tl~~si~S~Lpai-----~~gVI~yNdc~D~t~E-iil~fckkyP~fip~~Ypy~v~~~n~~~~~n 160 (347)
T PF06306_consen 88 NPWAFIRVKNEA-MTLAESIESILPAI-----DEGVIGYNDCTDGTEE-IILEFCKKYPSFIPIKYPYEVIIKNPKSEEN 160 (347)
T ss_pred CcceEEEEcchh-hhHHHHHHHHHHHH-----hccEEEeecCCCCHHH-HHHHHHHhCcccccccCcchhhccCCchhhh
Confidence 578899999999 99999999998633 2888888999999966 999999999864444221 111 1
Q ss_pred CHHHHHHHHHhhc-CCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCCCCCceeeeeccc
Q psy8674 341 GLIRTRSRGAKES-RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGM 419 (439)
Q Consensus 341 g~~~a~n~g~~~a-~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~ 419 (439)
....=.|.++... +.+|++-+|+|-+..+.-|-+..-...+..+++..+.|+-+=.+.-.|--+.+....+.+..||.+
T Consensus 161 ~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~pk~~~~~v~YsRINF~v~D~eifI~n~g~~~~l~~~gDqlL 240 (347)
T PF06306_consen 161 SLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYIPKNDYDVVSYSRINFHVFDGEIFIQNNGNFGFLIAGGDQLL 240 (347)
T ss_pred hhhhhhhhhhcccccceEEEEeccceeecHHHHhhhheeeccccceEEecceeEEEECCeEEEEecCCcccccCCCceEE
Confidence 1334456666654 589999999999988766544433334444566668886655554445444443333444555544
Q ss_pred e
Q psy8674 420 L 420 (439)
Q Consensus 420 ~ 420 (439)
.
T Consensus 241 I 241 (347)
T PF06306_consen 241 I 241 (347)
T ss_pred E
Confidence 3
No 141
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.44 E-value=0.0015 Score=63.42 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=66.4
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC---------
Q psy8674 267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--------- 337 (439)
Q Consensus 267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~--------- 337 (439)
..+.+-|+|.++|+. +.|.+||++|++.......+.|||..||+...+.+ .++.+.. .+++++..
T Consensus 91 ~~~~~pVlV~AcNRp-~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~-vi~~y~~----~v~~i~~~~~~~i~~~~ 164 (434)
T PF03071_consen 91 KEPVIPVLVFACNRP-DYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAE-VIKSYGD----QVTYIQHPDFSPITIPP 164 (434)
T ss_dssp ------EEEEESS-T-T-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHH-HHHGGGG----GSEEEE-S--S-----T
T ss_pred CCCcceEEEEecCCc-HHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHH-HHHHhhh----hheeeecCCcCCceeCc
Confidence 456788999999999 99999999999865433234799999998877655 6666532 24444322
Q ss_pred CC------CCHH----HHHHHHHhhcCCCEEEEEcCCCccCCCChHHH---HHhhhcCCCEEEEee
Q psy8674 338 ER------EGLI----RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPL---LAPIYSDRKIMTVPV 390 (439)
Q Consensus 338 ~~------~g~~----~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l---~~~~~~~~~~~v~~~ 390 (439)
.. .+.+ .|++..+..-..+.++++.+|..+.|++++-+ ...+++++...++..
T Consensus 165 ~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSa 230 (434)
T PF03071_consen 165 KEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISA 230 (434)
T ss_dssp T-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES
T ss_pred ccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEc
Confidence 11 0112 23333333345789999999999999999655 455566777655543
No 142
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.0026 Score=56.62 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=68.4
Q ss_pred CCceEEEEEecCCC--hhHHHHHHH--HHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC---C
Q psy8674 268 LPKASVILVFHNEG--FSSLMRTVH--SIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER---E 340 (439)
Q Consensus 268 ~p~vsiiip~~n~~--~~~l~~~l~--sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~---~ 340 (439)
|+.+++|||+--.. +..-.+.+. +++.--.+....+||++++.+.-+ ..+..+.+..+ ++.++..... .
T Consensus 1 m~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d---~~i~~~i~~~~-~~~yl~~~s~~~F~ 76 (346)
T COG4092 1 MQPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD---RLIRSYIDPMP-RVLYLDFGSPEPFA 76 (346)
T ss_pred CCCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchhHH---HHHHHHhcccc-ceEEEecCCCcccc
Confidence 46789999987543 122233333 222221223345999998876433 26777777665 6666654322 2
Q ss_pred CHHHHHHHHHhhcC----CCEEEEEcCCCccCCCChHHHHHh
Q psy8674 341 GLIRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLLAP 378 (439)
Q Consensus 341 g~~~a~n~g~~~a~----~d~i~~ld~D~~~~~~~l~~l~~~ 378 (439)
..+.+.|.|+.++. +++++|||.||..+.+-..+++..
T Consensus 77 s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~ 118 (346)
T COG4092 77 SETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSI 118 (346)
T ss_pred chhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHH
Confidence 34778999998876 999999999999986656666543
No 143
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=97.15 E-value=0.0024 Score=60.57 Aligned_cols=160 Identities=12% Similarity=0.103 Sum_probs=94.0
Q ss_pred CCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcC----CCeEeeeeeecccCCCcc-----ccc--ccCC
Q psy8674 25 REGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD----RKIMTVPVIDGIDYQTWE-----FRS--VYEP 93 (439)
Q Consensus 25 n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~~~~~-----~~~--~~~~ 93 (439)
-+-+...||.|...|+.++++.+|.|..++++.-+.+.+.+... ..+.|.|........... ... ..+.
T Consensus 112 ~YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaFE~~~~~~~P~~K~eL~~~~~~~~ 191 (317)
T PF13896_consen 112 LYPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAFETREGADIPRTKKELLELLKNGK 191 (317)
T ss_pred CCChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeeeecccCcCCCCCHHHHHHHHHhCc
Confidence 34567999999999999999999999999999888887766643 234444543321110000 000 0000
Q ss_pred CCccccccccccccccCCCchHHHhhccCC----CCCccCccccc--eEEEEeHHHHHHhCCCCCCCCCccchhhHHHHH
Q psy8674 94 DHHYRGIFEWGMLYKENELPEREAKKRKYN----SEPYKSPTHAG--GLFAMDRAFFLELGGYDPGLLVWGGENFELSFK 167 (439)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g--~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~R 167 (439)
.. .|....-...+..+....|..... ..++.+.+-.+ -.+.++| .+-.|||+|..+|..-+-..+-
T Consensus 192 ~~----~Fh~~~~~~~h~~t~~~~W~~~~~~~~~~~~y~v~~~~~~EP~~I~~~----~~P~yDErF~~yg~nk~s~~~e 263 (317)
T PF13896_consen 192 AR----PFHHKVCPQGHGPTNYDRWFSAPESDELDVPYEVKYEDGWEPYYIGRR----NVPLYDERFRGYGFNKISQIYE 263 (317)
T ss_pred hh----hccccccccCcCCccHHHHhccCCcCCCcceEEEccCCCccCEEEccC----CCCCCcccccccccchHHHHHH
Confidence 00 010000001111111122221111 11222221111 1234443 5678999999999989999999
Q ss_pred HHHhCCcEEEecccceecccccccc
Q psy8674 168 IWMCGGSIEWVPCSRIVSLIRPVFK 192 (439)
Q Consensus 168 l~~~G~~i~~~p~~~v~H~~~~~~~ 192 (439)
|..+||+....|++.+.|.++....
T Consensus 264 L~~~gy~F~VL~~aFlVH~~h~~~~ 288 (317)
T PF13896_consen 264 LCAAGYRFHVLPNAFLVHRPHKPSN 288 (317)
T ss_pred HHHcCCEEEEcCCeeEEecCCCCcc
Confidence 9999999999999999999766544
No 144
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.11 E-value=0.0013 Score=58.10 Aligned_cols=62 Identities=31% Similarity=0.318 Sum_probs=50.9
Q ss_pred hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHH
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 65 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~ 65 (439)
+.+.++++.++.+ ++.......|.|.+.|+|.|+..+.|++++|+|+|+. .+..+..++...
T Consensus 46 t~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 46 TTEIAIEYGAKDV-RVIRLINERNGGLGAARNAGLEYARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred hHHHHHHHhhhcc-eEEEeecccCCChHHHHHhhHHhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 4556666666553 5777777999999999999999999999999999999 998888855444
No 145
>KOG2547|consensus
Probab=96.99 E-value=0.0019 Score=60.30 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=94.5
Q ss_pred HHHHHHHHhcC-CcEEEEEecCCCChhHHHH---hhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeec
Q psy8674 4 KKLEDYIERFN-GKVRLIRNTEREGLIRTRS---RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG 79 (439)
Q Consensus 4 ~~l~~~~~~~~-~~i~~i~~~~n~G~a~arN---~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~ 79 (439)
+.++..+++|| -.-+++--.+..|...-.| .|.+.|+-|+|+++|+|..+.||.+-.|+..+..+...+.+.+...
T Consensus 130 ~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py 209 (431)
T KOG2547|consen 130 EVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPY 209 (431)
T ss_pred HHHHHHHhhCCCcceEEEEcccccccChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCce
Confidence 56788889998 4557777666677655444 4789999999999999999999999999999997665544322222
Q ss_pred -ccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCcc
Q psy8674 80 -IDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWG 158 (439)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~ 158 (439)
.+.+.+.. .....-++......+++.. .......+|-.-++||+++++.||+. .|.-|-
T Consensus 210 ~~dr~Gf~a---------tle~~~fgTsh~r~yl~~n----------~~~~~c~tgms~~mrK~~ld~~ggi~-~f~~yL 269 (431)
T KOG2547|consen 210 CKDRQGFDA---------TLEQVYFGTSHPRIYLSGN----------VLGFNCSTGMSSMMRKEALDECGGIS-AFGGYL 269 (431)
T ss_pred eeccccchh---------hhhheeeccCCceEEEccc----------cccccccccHHHHHHHHHHHHhccHH-HHHHHH
Confidence 11111100 0000001111111111100 01111223444578999999999974 343345
Q ss_pred chhhHHHHHHHHhCCcE
Q psy8674 159 GENFELSFKIWMCGGSI 175 (439)
Q Consensus 159 ~ED~Dl~~Rl~~~G~~i 175 (439)
.||+=+.--+...|++-
T Consensus 270 aedyFaaksllSRG~ks 286 (431)
T KOG2547|consen 270 AEDYFAAKSLLSRGWKS 286 (431)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 79999999999999883
No 146
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.96 E-value=0.0088 Score=58.52 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=79.7
Q ss_pred CceEEEEEecCCCh----hHHHHHHHHHHhcCC-cCCcceEEEEeCCCChhh-HH--HHHHHHHHHcC--CcEEEEEcCC
Q psy8674 269 PKASVILVFHNEGF----SSLMRTVHSIIKRTP-AQYLEEIILVDDFSSKAD-LD--QKLEDYIQRFN--GKVRLIRNTE 338 (439)
Q Consensus 269 p~vsiiip~~n~~~----~~l~~~l~sl~~q~~-~~~~~eiivvdd~s~d~t-~~--~~~~~~~~~~~--~~v~~i~~~~ 338 (439)
.+..|++|+|||+. .-|+.+-+|+.+... .+| .+.|+.|.-+.+- +. +....++++.. .+|-+-+..+
T Consensus 144 hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~F--D~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr~ 221 (736)
T COG2943 144 HRTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHF--DFFVLSDSRDPDIALAEQKAWAELCRELGGEGNIFYRRRRR 221 (736)
T ss_pred cceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccc--eEEEEcCCCCchhhhhHHHHHHHHHHHhCCCCceeeehHhh
Confidence 35889999999985 445666677776542 344 7777766543321 11 12223444444 3555554444
Q ss_pred CCCH-HHHHHHHHhh--cCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeeecCCC
Q psy8674 339 REGL-IRTRSRGAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGIDYQT 398 (439)
Q Consensus 339 ~~g~-~~a~n~g~~~--a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~ 398 (439)
|.+. +++..-=.+. ...++.++||+|..++.+.+..|++.++.++. +++-.....++.++
T Consensus 222 n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~T 285 (736)
T COG2943 222 NVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGDT 285 (736)
T ss_pred hhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcch
Confidence 4432 2211111222 34789999999999999999999999999887 45555555666666
No 147
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=96.90 E-value=0.0013 Score=65.96 Aligned_cols=135 Identities=18% Similarity=0.153 Sum_probs=81.6
Q ss_pred hhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeE-eeeeeecccCCCcccccccCCCCccccccccccccccCCCc
Q psy8674 35 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM-TVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP 113 (439)
Q Consensus 35 G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (439)
|+....-+||+.+|+|+.+.|+.+..|+..+.+++..+ +++.... ..... .. |......++.-
T Consensus 196 g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i-~n~~~--------s~-------~t~~Q~fEY~i 259 (527)
T PF03142_consen 196 GVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRI-DNKGQ--------SW-------WTMYQVFEYAI 259 (527)
T ss_pred ccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEE-cCCCC--------CH-------hhheeccchhH
Confidence 55555679999999999999999999999999888764 4443332 11110 00 11111111222
Q ss_pred hHHHhhccCCCCCccCccccceEEEEeHHHHHH--------------hCCCCCC----C----CCccchhhHHHHHHHHh
Q psy8674 114 EREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLE--------------LGGYDPG----L----LVWGGENFELSFKIWMC 171 (439)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~--------------iGgfde~----~----~~~~~ED~Dl~~Rl~~~ 171 (439)
.+.. .+...+-...+..++||+-++|-+.... +.+|.+. + ...-+||--||--+.+.
T Consensus 260 sh~l-~Ka~Es~fG~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~~lGEDR~LttLlLk~ 338 (527)
T PF03142_consen 260 SHHL-QKAFESVFGSVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLLDLGEDRWLTTLLLKQ 338 (527)
T ss_pred HHHH-HHHHHHHhCceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhhhcchhHHHHHHHHhh
Confidence 1111 1112222234557789998888777654 1122221 1 01236999999777777
Q ss_pred --CCcEEEecccceecc
Q psy8674 172 --GGSIEWVPCSRIVSL 186 (439)
Q Consensus 172 --G~~i~~~p~~~v~H~ 186 (439)
++++.|+|.+..+-.
T Consensus 339 ~~~~k~~y~~~A~a~T~ 355 (527)
T PF03142_consen 339 FPGYKTEYVPSAVAYTD 355 (527)
T ss_pred CCCceEEEccccccccc
Confidence 789999999977655
No 148
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=96.83 E-value=0.014 Score=54.60 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=54.0
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCC---hhhHH--HHHHHHHHHcCCcEEEEEcC------
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS---KADLD--QKLEDYIQRFNGKVRLIRNT------ 337 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~---d~t~~--~~~~~~~~~~~~~v~~i~~~------ 337 (439)
-+.+||||+.||.... |+.++..-+.+. -||||-|++. |.... +.++.+.......+.+++..
T Consensus 50 ~~maIVVP~KnE~l~l----leGVL~gIPh~C--~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA~ 123 (381)
T PF09488_consen 50 SKMAIVVPCKNEKLKL----LEGVLSGIPHDC--LIIVVSNSSREPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLAE 123 (381)
T ss_dssp TTEEEEEEESS--HHH----HHHHHHCS-TTS--EEEEEE---CSSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHHH
T ss_pred hCcEEEEECCCCchhh----hhhhhhcCCCCC--eEEEEECCCCCCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHHH
Confidence 3689999999998443 444454444444 7899988877 43221 26666666543456666542
Q ss_pred ----------------CCCCHHHHHHHHHhhcC---CCEEEEEcCCCccC
Q psy8674 338 ----------------EREGLIRTRSRGAKESR---GEVIVFLDAHCEVG 368 (439)
Q Consensus 338 ----------------~~~g~~~a~n~g~~~a~---~d~i~~ld~D~~~~ 368 (439)
-+-|++.++-.|+-.|+ .+||-|+|+|..++
T Consensus 124 Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiP 173 (381)
T PF09488_consen 124 AFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIP 173 (381)
T ss_dssp HHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-H
T ss_pred HHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCc
Confidence 12468888888876654 69999999998875
No 149
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=96.54 E-value=0.018 Score=51.95 Aligned_cols=90 Identities=11% Similarity=0.172 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh---cCCCEEEE--E
Q psy8674 287 RTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE---SRGEVIVF--L 361 (439)
Q Consensus 287 ~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~---a~~d~i~~--l 361 (439)
-||.||..|+.++| .+||+-+........+.+.++.+.++ .++++..+... ...+...+++. ..+++++. |
T Consensus 46 ~~LpSl~~QTd~dF--~~lv~~~~~~P~~~~~rL~~l~~~~p-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~RL 121 (234)
T PF11316_consen 46 YCLPSLRAQTDQDF--TWLVLFDDDLPEPYRERLRDLLADYP-QFRIVFRPPGP-HRDAMRRAINAARRDGADPVLQFRL 121 (234)
T ss_pred HHhhHHHhccCCCe--EEEEEECCCCCHHHHHHHHHHhccCC-CcEEEecCCch-HHHHHHHHHhhhccCCCCEEEEEEE
Confidence 47899999999998 77765444444444558888887776 56666554433 45555555533 23555443 6
Q ss_pred cCCCccCCCChHHHHHhhh
Q psy8674 362 DAHCEVGLNWLPPLLAPIY 380 (439)
Q Consensus 362 d~D~~~~~~~l~~l~~~~~ 380 (439)
|+|+.+..++++.+-+.+.
T Consensus 122 DdDDAl~~dFV~rlr~~a~ 140 (234)
T PF11316_consen 122 DDDDALHRDFVARLRRAAA 140 (234)
T ss_pred CCcchhhHHHHHHHHHHHH
Confidence 9999999999999999874
No 150
>KOG3917|consensus
Probab=96.31 E-value=0.006 Score=52.80 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=42.5
Q ss_pred cccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCCcEEE
Q psy8674 131 THAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEW 177 (439)
Q Consensus 131 ~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~~i~~ 177 (439)
.+.|+.++++++-|.++.|+...|..||-||-||.+|+..+|..+.-
T Consensus 180 ~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltR 226 (310)
T KOG3917|consen 180 KFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTR 226 (310)
T ss_pred hhcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEec
Confidence 45788999999999999999999999999999999999999977543
No 151
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=96.20 E-value=0.052 Score=50.59 Aligned_cols=105 Identities=15% Similarity=0.195 Sum_probs=63.6
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCC---hhhH--HHHHHHHHHHcCCcEEEEEcCC-----
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS---KADL--DQKLEDYIQRFNGKVRLIRNTE----- 338 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~---d~t~--~~~~~~~~~~~~~~v~~i~~~~----- 338 (439)
-+..||||+.||.... |+.++.--+.+. -||||.|++. |... .+.++.+..-....+.+++...
T Consensus 50 ~~maIVVP~KdE~l~l----leGVL~gIPh~c--~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~r~~i~vHQkDp~la~ 123 (381)
T TIGR02460 50 GKTAIVVPVKNEKLHL----LEGVLSGIPHEC--PIIIVSNSKREPPDRFKMEVDLIRHFSNLTHRKIIIIHQKDPALAE 123 (381)
T ss_pred hCcEEEEEcCCCchhH----HhhHhhcCCCCC--eEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHH
Confidence 3689999999998443 444444444444 7888888764 2211 1145555543233455554311
Q ss_pred -----------------CCCHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674 339 -----------------REGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIY 380 (439)
Q Consensus 339 -----------------~~g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~ 380 (439)
+.|++.++-.|+-.|+ .+||-|+|+|..++ +.+.+.++.+.
T Consensus 124 Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiP-GaV~EYvk~yA 184 (381)
T TIGR02460 124 AFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFP-GAVNEYVKIYA 184 (381)
T ss_pred HHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCC-chHHHHHHHHH
Confidence 1367777777776554 69999999998875 44555554443
No 152
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=96.17 E-value=0.052 Score=50.89 Aligned_cols=105 Identities=12% Similarity=0.183 Sum_probs=63.2
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCC---hhhH--HHHHHHHHHHcCCcEEEEEcCC-----
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS---KADL--DQKLEDYIQRFNGKVRLIRNTE----- 338 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~---d~t~--~~~~~~~~~~~~~~v~~i~~~~----- 338 (439)
-...||||+.||.... |+.++.--+.+. -||||.|++. |... .+.++.+..-....+.+++...
T Consensus 51 ~~mAIVVP~KdE~l~l----leGVL~gIPh~c--~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~r~~i~vHQkDp~la~ 124 (393)
T PRK14503 51 GRMAIVVPVKNERLKL----LEGVLKGIPHEC--PIIVVSNSKREPPDRFKLEVDLVRHFYRLTQRPIIIVHQKDPGLAE 124 (393)
T ss_pred hCcEEEEEcCCCchhH----HhhHhhcCCCCC--eEEEEeCCCCCCchHHHHHHHHHHHHHhhhcCceEEEEcCCHHHHH
Confidence 3689999999998443 444454444444 7888887754 2211 1145555543323455554311
Q ss_pred -----------------CCCHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674 339 -----------------REGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIY 380 (439)
Q Consensus 339 -----------------~~g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~ 380 (439)
+.|++.++-.|+-.|+ .+||-|+|+|..++ +.+.+.++.+.
T Consensus 125 Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiP-GaV~EYvk~yA 185 (393)
T PRK14503 125 ALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIP-GAVNEYVKIYA 185 (393)
T ss_pred HHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCC-chHHHHHHHHH
Confidence 1367777777766554 69999999998875 44555554443
No 153
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=96.04 E-value=0.071 Score=54.07 Aligned_cols=124 Identities=13% Similarity=0.168 Sum_probs=84.8
Q ss_pred CCCCceEEEEEecCC-ChhHHHHHHHHHHhcCC-cCCcceEEEEeCCC-Chh----hHHHHHHHHHHHcC-CcEEEEEcC
Q psy8674 266 LDLPKASVILVFHNE-GFSSLMRTVHSIIKRTP-AQYLEEIILVDDFS-SKA----DLDQKLEDYIQRFN-GKVRLIRNT 337 (439)
Q Consensus 266 ~~~p~vsiiip~~n~-~~~~l~~~l~sl~~q~~-~~~~~eiivvdd~s-~d~----t~~~~~~~~~~~~~-~~v~~i~~~ 337 (439)
.....|.||||..++ . +.+.+-|+...+-.. ++....++||..++ .|. .+.+.+.++..+++ .++.++...
T Consensus 244 ~~~~~V~iIvPl~~r~~-~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~ 322 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREA-DWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVK 322 (499)
T ss_pred cCCCEEEEEEEecCccH-HHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEec
Confidence 345789999999999 6 788777776554321 12223555555544 222 12336677777764 368888887
Q ss_pred -CCCCHHHHHHHHHhhcC-CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674 338 -EREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 338 -~~~g~~~a~n~g~~~a~-~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
.++..+.++..|++... .++++|+|.|..+++++|.+.-..-..+ ..+-.|++
T Consensus 323 ~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g-~qvy~PI~ 377 (499)
T PF05679_consen 323 TGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPG-KQVYFPIV 377 (499)
T ss_pred CCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcC-cEEEEeee
Confidence 88889999999998665 5688889999999999999876554433 23444544
No 154
>KOG2977|consensus
Probab=95.48 E-value=0.034 Score=50.34 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=50.7
Q ss_pred hhHHHHHHHHhcC-CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHh
Q psy8674 2 LDKKLEDYIERFN-GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY 66 (439)
Q Consensus 2 ~~~~l~~~~~~~~-~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~ 66 (439)
+.+..-+|..++. ++|+|+...+|+|.++|.-.|+-.++|++++|.|+|---.=--++.+...+.
T Consensus 118 T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al~ 183 (323)
T KOG2977|consen 118 TVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQKILFADADGATKFADLEKLEKALN 183 (323)
T ss_pred HHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCceEEEEcCCCCccCCCHHHHHHHHH
Confidence 3455556666665 7999999999999999999999999999999999998642222455555555
No 155
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=95.41 E-value=0.27 Score=44.50 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=72.1
Q ss_pred EEEEEecCCChhHHHHHHH-HHH---hcCCcCCcceEEEEeCCCChhhHHHHHHHHH---HHcCCcEEEEEcCCCC----
Q psy8674 272 SVILVFHNEGFSSLMRTVH-SII---KRTPAQYLEEIILVDDFSSKADLDQKLEDYI---QRFNGKVRLIRNTERE---- 340 (439)
Q Consensus 272 siiip~~n~~~~~l~~~l~-sl~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~---~~~~~~v~~i~~~~~~---- 340 (439)
-|..-.||.+ +.|..... +++ ....+. .+=|-|+++||.|.|.+ .++.+. ...+.+-.++..+...
T Consensus 3 fIA~~l~~~~-~iL~~~~~~~ll~li~~LGp~-nv~vSIyE~~S~D~T~~-~L~~L~~~L~~lgv~~~i~~~~~~~~~~~ 79 (241)
T PF11735_consen 3 FIAANLYNNE-DILPSLWGDALLELIRFLGPE-NVFVSIYESGSWDGTKE-ALRALDAELDALGVPHSIVLSDITHRDEI 79 (241)
T ss_pred EEEEEcccCH-hHHHHHHHHHHHHHHHHhCcC-eEEEEEEeCCCCccHHH-HHHHHHHHHHhCCCCeEEEeCCCcccccc
Confidence 3455567776 66654444 433 333332 34678999999999977 888776 4444333443322111
Q ss_pred ----------CHHHHHHHHHhhc---------CCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674 341 ----------GLIRTRSRGAKES---------RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 389 (439)
Q Consensus 341 ----------g~~~a~n~g~~~a---------~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~ 389 (439)
-.+..+|.+++-. ..+-|+||| |..+++..+-+|+..-......++|.
T Consensus 80 ~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aCa 146 (241)
T PF11735_consen 80 ERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNRGNYDMACA 146 (241)
T ss_pred cccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCcccccchhh
Confidence 1478899998632 246799999 88898888888887766555555554
No 156
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=95.35 E-value=0.045 Score=49.99 Aligned_cols=122 Identities=13% Similarity=0.176 Sum_probs=75.5
Q ss_pred eEEEEEe-cCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHH
Q psy8674 271 ASVILVF-HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 349 (439)
Q Consensus 271 vsiiip~-~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g 349 (439)
+||||.+ |++. +.|.+.|.++..... ..||+||=++....- . . ..+... ...++++..+.|. -..+-.-
T Consensus 1 fTvvi~t~~~R~-~~L~~~l~~l~~~~~---l~~IvVvWn~~~~~P-~-~-~~~~~~-~vpV~~~~~~~ns--LnnRF~p 70 (247)
T PF09258_consen 1 FTVVINTSYKRS-DLLKRLLRHLASSPS---LRKIVVVWNNPNPPP-P-S-SKWPST-GVPVRVVRSSRNS--LNNRFLP 70 (247)
T ss_dssp EEEEEEE-SS-H-HHHHHHHHHHTTSTT---EEEEEEEEE-TS--T-H-H-HHHT----S-EEEEEESSHH--GGGGGS-
T ss_pred CEEEEEecccch-HHHHHHHHHHHcCCC---CCeEEEEeCCCCCCC-c-c-cccCCC-CceEEEEecCCcc--HHhcCcC
Confidence 4789999 9998 999999999954433 448999976633221 1 1 222222 1368888755541 1233334
Q ss_pred HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE--eeeeee--cCCCceEE
Q psy8674 350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV--PVIDGI--DYQTWEFR 402 (439)
Q Consensus 350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~--~~~~~~--~~~~~~~~ 402 (439)
....+++.|+.+|+|..++.+.|+......+..+..+|+ |..-.. +...+.|.
T Consensus 71 ~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~ 127 (247)
T PF09258_consen 71 DPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYT 127 (247)
T ss_dssp -TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE
T ss_pred ccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccc
Confidence 456779999999999999999999999999999887777 322222 34446665
No 157
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=95.01 E-value=0.1 Score=44.00 Aligned_cols=102 Identities=16% Similarity=0.287 Sum_probs=72.5
Q ss_pred EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhhc
Q psy8674 275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKES 353 (439)
Q Consensus 275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~a 353 (439)
++. +.. ..|..+++.+.+.... +|+||-.. +. +.. ..... .++++..+ ...|...++-.|+...
T Consensus 19 ~~i-~g~-~li~~~l~~l~~~~~~----~Ivvv~~~--~~----~~~-~~~~~--~~~~v~~~~~~~G~~~sl~~a~~~~ 83 (160)
T PF12804_consen 19 LPI-GGK-PLIERVLEALREAGVD----DIVVVTGE--EE----IYE-YLERY--GIKVVVDPEPGQGPLASLLAALSQL 83 (160)
T ss_dssp SEE-TTE-EHHHHHHHHHHHHTES----EEEEEEST--HH----HHH-HHTTT--TSEEEE-STSSCSHHHHHHHHHHTS
T ss_pred eeE-CCc-cHHHHHHHHhhccCCc----eEEEecCh--HH----HHH-HHhcc--CceEEEeccccCChHHHHHHHHHhc
Confidence 444 555 7899999988776422 78887655 22 112 22222 46777665 4689999999999998
Q ss_pred -CCCEEEEEcCCCc-cCCCChHHHHHhhhcCCCEEEEeee
Q psy8674 354 -RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 354 -~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
..+.++++..|.. ++++.+..+++.+.+.+..++++..
T Consensus 84 ~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 84 PSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp TTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 8999999999996 5899999999999876666665543
No 158
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=94.72 E-value=0.24 Score=43.87 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=63.2
Q ss_pred CceEEEEEecCCCh--hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC-------
Q psy8674 269 PKASVILVFHNEGF--SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER------- 339 (439)
Q Consensus 269 p~vsiiip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~------- 339 (439)
|.|-||.|+|.+.. ..|.+.-++|..- +++ -.|||+|+... | . ...++.++.+-..+.+..+.+
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lV--p~l--~WIVVEd~~~~-t-~-~va~lL~~sgl~y~HL~~~~~~~~~~~~ 73 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLV--PPL--HWIVVEDSEEK-T-P-LVAELLRRSGLMYTHLNAKTPSDPTWLK 73 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcC--Cce--EEEEEeCCCCC-C-H-HHHHHHHHcCCceEEeccCCCCCcccCC
Confidence 46889999998751 4455555555532 355 88999998732 1 1 334444444434444433322
Q ss_pred -CCHHHHHHHHHhhcC-------CCEEEEEcCCCccCCCChHHHH
Q psy8674 340 -EGLIRTRSRGAKESR-------GEVIVFLDAHCEVGLNWLPPLL 376 (439)
Q Consensus 340 -~g~~~a~n~g~~~a~-------~d~i~~ld~D~~~~~~~l~~l~ 376 (439)
.| ...+|.|++..+ .-++.|.|+|..++-..+++|-
T Consensus 74 ~rg-~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR 117 (223)
T cd00218 74 PRG-VEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR 117 (223)
T ss_pred ccc-HHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence 33 467999987542 3588999999988877777743
No 159
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=94.56 E-value=0.29 Score=50.69 Aligned_cols=105 Identities=10% Similarity=0.153 Sum_probs=63.7
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCC---hhhH--HHHHHHHHHHcCCcEEEEEcC------
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS---KADL--DQKLEDYIQRFNGKVRLIRNT------ 337 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~---d~t~--~~~~~~~~~~~~~~v~~i~~~------ 337 (439)
-+..||||+.||.... |+.++.--+.+. -||||.|++. |... .+.++.+..-....+.+++..
T Consensus 55 ~~~aivvp~k~e~~~~----~~gvl~~ip~~c--~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~~~~~~vhq~dp~~a~ 128 (694)
T PRK14502 55 KKMAIVLPIKDEDLKV----FEGVLSGIPHDC--LMIVISNSSKQEVDNFKNEKDIVNRFCRITHRQAIVVHQKNPELAN 128 (694)
T ss_pred hCcEEEEEcCCCchhH----HhhHhhcCCCCC--eEEEEeCCCCCchHHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHH
Confidence 3689999999998333 444454444444 7888877764 3211 114555554332345555431
Q ss_pred ----------------CCCCHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674 338 ----------------EREGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIY 380 (439)
Q Consensus 338 ----------------~~~g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~ 380 (439)
-+.|++.++-.|+-.|+ .+||-|+|+|..++ +.+.+.++.+.
T Consensus 129 a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~p-g~v~ey~~~ya 189 (694)
T PRK14502 129 AIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIP-GAVWEYAKHFA 189 (694)
T ss_pred HHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCC-chHHHHHHHHH
Confidence 11467777777776655 69999999998875 44555554443
No 160
>KOG1476|consensus
Probab=94.52 E-value=0.34 Score=44.69 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCceEEEEEecCCCh--hHHHHHHHHHHhcCCcCCcceEEEEeCCC-ChhhHHHHHHHHHHHcCCcEEEEEcCCCCCH--
Q psy8674 268 LPKASVILVFHNEGF--SSLMRTVHSIIKRTPAQYLEEIILVDDFS-SKADLDQKLEDYIQRFNGKVRLIRNTEREGL-- 342 (439)
Q Consensus 268 ~p~vsiiip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~-- 342 (439)
.|.|-||.|+|.+.- ..|.+.-++|.. . +++ ..|||+||+ ... ....+.++.+-..+++..+...+.
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~-V-~nL--hWIVVEd~~~~~p----~v~~~L~rtgl~ythl~~~t~~~~~~ 157 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLRL-V-PNL--HWIVVEDGEGTTP----EVSGILRRTGLPYTHLVHKTPMGYKA 157 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHhh-c-CCe--eEEEEecCCCCCH----HHHHHHHHcCCceEEEeccCCCCCcc
Confidence 688999999999861 344444455543 2 366 889999995 222 334444444434555555555442
Q ss_pred ---HHHHHHHHhhcC---------CCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674 343 ---IRTRSRGAKESR---------GEVIVFLDAHCEVGLNWLPPLLAPIY 380 (439)
Q Consensus 343 ---~~a~n~g~~~a~---------~d~i~~ld~D~~~~~~~l~~l~~~~~ 380 (439)
-..+|.|++..+ .-++.|-|+|...+-+..++ +..+.
T Consensus 158 ~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v~ 206 (330)
T KOG1476|consen 158 RRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNVK 206 (330)
T ss_pred ccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhccc
Confidence 367888887543 45888889998888776666 44333
No 161
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.52 E-value=0.36 Score=41.63 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhhcC--C
Q psy8674 279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKESR--G 355 (439)
Q Consensus 279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~a~--~ 355 (439)
+.. ..|..+++.+..... . +|+||-+... . ......... .+.++..+ ...|...+...|++.+. .
T Consensus 24 ~g~-~li~~~i~~l~~~~~--~--~i~vv~~~~~-~----~~~~~~~~~--~~~~~~~~~~~~G~~~~i~~al~~~~~~~ 91 (186)
T cd04182 24 DGK-PLLRHALDAALAAGL--S--RVIVVLGAEA-D----AVRAALAGL--PVVVVINPDWEEGMSSSLAAGLEALPADA 91 (186)
T ss_pred CCe-eHHHHHHHHHHhCCC--C--cEEEECCCcH-H----HHHHHhcCC--CeEEEeCCChhhCHHHHHHHHHHhccccC
Confidence 344 688888888876521 1 6766643321 1 112222222 35545443 33688889999999886 7
Q ss_pred CEEEEEcCCCc-cCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674 356 EVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVID 392 (439)
Q Consensus 356 d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~ 392 (439)
++++++.+|.- +++..+..+++.+...+..+++|..+
T Consensus 92 ~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~~~ 129 (186)
T cd04182 92 DAVLILLADQPLVTAETLRALIDAFREDGAGIVAPVYQ 129 (186)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Confidence 99999999995 68899999999887666667777654
No 162
>KOG2571|consensus
Probab=94.49 E-value=0.032 Score=58.61 Aligned_cols=135 Identities=15% Similarity=0.079 Sum_probs=76.3
Q ss_pred HhhhhhccC--cEEEEecCCcccCCCchHHHHHHHhcCCCeE-eeeeeecccCCCcccccccCCCCcccccccccccccc
Q psy8674 33 SRGAKESRG--EVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM-TVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKE 109 (439)
Q Consensus 33 N~G~~~A~g--~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (439)
+........ +||+++|+|+.+.|+.|-.|++.++.++..+ ++|.+....+.- ......|....
T Consensus 431 y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~I~~~~~~w----------~v~~Q~FEY~I---- 496 (862)
T KOG2571|consen 431 YTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGRILNKGGSW----------VVAYQNFEYAI---- 496 (862)
T ss_pred HHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceeccccccCCCce----------EEeHHHHHHHH----
Confidence 334444443 4779999999999999999999999888754 444322211100 00001111110
Q ss_pred CCCchHHHhhccCCCCCccCccccceEEEEeHHHHHH-h-----C-CCCC---CCCCccchhhHHHHHHHHhCCcEEEec
Q psy8674 110 NELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLE-L-----G-GYDP---GLLVWGGENFELSFKIWMCGGSIEWVP 179 (439)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~-i-----G-gfde---~~~~~~~ED~Dl~~Rl~~~G~~i~~~p 179 (439)
. ....+...+-..-+..++||.-++|-+++.. - | .+.+ ..+.--+||-=||.++..+||.+.|++
T Consensus 497 ----s-h~l~Ka~ESvFG~VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~a 571 (862)
T KOG2571|consen 497 ----S-HNLQKATESVFGCVSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYVA 571 (862)
T ss_pred ----H-HHHHHhhhhhceeEEecCchhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeeec
Confidence 0 0011111112222345578777788755422 1 1 0111 011112699999999999999999999
Q ss_pred ccceecc
Q psy8674 180 CSRIVSL 186 (439)
Q Consensus 180 ~~~v~H~ 186 (439)
.+...-.
T Consensus 572 ~s~a~t~ 578 (862)
T KOG2571|consen 572 ASDAETE 578 (862)
T ss_pred ccccccc
Confidence 9887544
No 163
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=94.40 E-value=0.37 Score=41.83 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHHHHHHHHh-hcCCCEEEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAK-ESRGEVIVF 360 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~a~n~g~~-~a~~d~i~~ 360 (439)
..|...++.+.+... + +|+||-+...+. ..+.+...+ .+.++..+. ..|...+...|++ ....+++++
T Consensus 26 pll~~~i~~l~~~~~-~---~iivv~~~~~~~----~~~~~~~~~--~v~~v~~~~~~~g~~~si~~~l~~~~~~~~vlv 95 (188)
T TIGR03310 26 TILEHVVDNALRLFF-D---EVILVLGHEADE----LVALLANHS--NITLVHNPQYAEGQSSSIKLGLELPVQSDGYLF 95 (188)
T ss_pred eHHHHHHHHHHHcCC-C---cEEEEeCCcHHH----HHHHhccCC--CeEEEECcChhcCHHHHHHHHhcCCCCCCEEEE
Confidence 688888888876432 1 666664433221 333333222 466665443 2577788888887 456789999
Q ss_pred EcCCCc-cCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674 361 LDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVID 392 (439)
Q Consensus 361 ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~ 392 (439)
+++|.- ++++.+..+++.+...+..+++|...
T Consensus 96 ~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 128 (188)
T TIGR03310 96 LLGDQPFVTPDIIQLLLEAFALKNDEIVVPLYK 128 (188)
T ss_pred EeCCcCCCCHHHHHHHHHHHHhCCCcEEEeecC
Confidence 999985 58899999999887777666776544
No 164
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=94.37 E-value=0.11 Score=48.36 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=67.9
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHH----HHcCCcEEEEEcC--CCCCHH
Q psy8674 270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYI----QRFNGKVRLIRNT--EREGLI 343 (439)
Q Consensus 270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~----~~~~~~v~~i~~~--~~~g~~ 343 (439)
.|.||||+-........+.-.+++ ..+ .+|||-|+...+.+. +.+-+- .+.+ -.+++-.+ -.+.-.
T Consensus 9 ~~divi~~~~~~l~~~~~~wr~~~----~~~--hliiv~d~~~~~~~~-~p~g~~~~~y~~~d-i~~~lg~~~~i~~~~~ 80 (348)
T PF03214_consen 9 EVDIVIPALRPNLTDFLEEWRPFF----SPY--HLIIVQDPDPNEEIK-VPEGFDYEVYNRND-IERVLGAKTLIPFKGD 80 (348)
T ss_pred cccEEeecccccHHHHHHHHHHhh----cce--eEEEEeCCCcccccc-CCcccceeeecHhh-HHhhcCCccccccccc
Confidence 589999999865212222223333 334 899999887654332 222110 0000 00111111 112346
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674 344 RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 389 (439)
Q Consensus 344 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~ 389 (439)
+++|.|.-.++.+|++++|+|+.+..++.-..++.+.++.....+|
T Consensus 81 a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~ 126 (348)
T PF03214_consen 81 ACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTP 126 (348)
T ss_pred chhhhHhhhcccceEEEEccccccccCCccceehhhhccceeeecc
Confidence 7899999999999999999999998888888888887765544443
No 165
>KOG3588|consensus
Probab=94.32 E-value=0.5 Score=44.53 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=78.1
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCC-ChhhHH-HHHHHHHHHcCCcEEEEEcCCCCCHH
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFS-SKADLD-QKLEDYIQRFNGKVRLIRNTEREGLI 343 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s-~d~t~~-~~~~~~~~~~~~~v~~i~~~~~~g~~ 343 (439)
.+.|.|.+|+|...+. ..+.+...++......+. +++||-=|+ .++... +.+..+...+. ++.++.....+..+
T Consensus 226 i~~pgih~i~pl~gr~-~~f~rf~q~~c~~~d~~l--~l~vv~f~~se~e~ak~e~~tslra~f~-~~q~l~lngeFSRa 301 (494)
T KOG3588|consen 226 IEDPGIHMIMPLRGRA-AIFARFAQSICARGDDRL--ALSVVYFGYSEDEMAKRETITSLRASFI-PVQFLGLNGEFSRA 301 (494)
T ss_pred ccCCCceEEEeccchH-HHhhhhhHHHhccCCCce--EEEEEEecCCChHHHhhhHHHHHhhcCC-ceEEecccchhhhh
Confidence 4667899999999999 889998888776555555 666655454 333221 24445666665 57777666667889
Q ss_pred HHHHHHHhhcCCCE-EEEEcCCCccCCCChHHHHH
Q psy8674 344 RTRSRGAKESRGEV-IVFLDAHCEVGLNWLPPLLA 377 (439)
Q Consensus 344 ~a~n~g~~~a~~d~-i~~ld~D~~~~~~~l~~l~~ 377 (439)
.|+..|.+.-+.+. +.|+|.|..++.++|...-.
T Consensus 302 ~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~ 336 (494)
T KOG3588|consen 302 KALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRL 336 (494)
T ss_pred HHHHhhHHHhccceeEEEeccceeehHHHHHHHhh
Confidence 99999999887665 55679999999888877643
No 166
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=93.92 E-value=1.1 Score=40.77 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=70.7
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
++|+|+.+ .|.-+|..|...... +|+||-.--+..+..+.+-. -+.+..+++++..++..|.+.|.-.|-...
T Consensus 25 LlpV~~KP--mi~y~l~~L~~aGI~----dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~Q~~p~GlA~Av~~a~~fv 97 (286)
T COG1209 25 LLPVYDKP--MIYYPLETLMLAGIR----DILIVVGPEDKPTFKELLGD-GSDFGVDITYAVQPEPDGLAHAVLIAEDFV 97 (286)
T ss_pred cceecCcc--hhHhHHHHHHHcCCc----eEEEEecCCchhhhhhhhcC-ccccCcceEEEecCCCCcHHHHHHHHHhhc
Confidence 78999975 888899988875543 67666443232222211111 123445899999999999999999999999
Q ss_pred CCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 354 RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 354 ~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
..+=++++=.|..+.. -+.+++..+.....
T Consensus 98 ~~~~f~l~LGDNi~~~-~l~~~~~~~~~~~~ 127 (286)
T COG1209 98 GDDDFVLYLGDNIFQD-GLSELLEHFAEEGS 127 (286)
T ss_pred CCCceEEEecCceecc-ChHHHHHHHhccCC
Confidence 8555555556666666 78888888876333
No 167
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=93.91 E-value=0.08 Score=48.38 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=34.6
Q ss_pred hhHHHHhhhhhccC---cEEEEecCCccc-CCCchHHHHHHHhcCCCeEeeeeee
Q psy8674 28 LIRTRSRGAKESRG---EVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVID 78 (439)
Q Consensus 28 ~a~arN~G~~~A~g---~~i~flD~D~~~-~~~~l~~l~~~~~~~~~~~v~~~~~ 78 (439)
+|+|||.-+..|-+ +|+++||+|++- +|+.|+.| .....++++|.+.
T Consensus 127 mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dl----i~~~kdIivPn~~ 177 (269)
T PF03452_consen 127 MARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDL----IAHDKDIIVPNCW 177 (269)
T ss_pred HHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHH----HhCCCCEEcccee
Confidence 58999999888754 999999999996 55554444 4456666666553
No 168
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=93.80 E-value=0.7 Score=41.50 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=66.9
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
++|.-+. ..|..+|+++.+... . +|+||-... .+ .+.++...+ ++.++..+...|.+.+.-.|+...
T Consensus 20 l~~v~gk--pli~~~i~~l~~~~i--~--~i~iv~~~~-~~----~i~~~~~~~--~~~~~~~~~~~g~~~ai~~a~~~~ 86 (229)
T cd02540 20 LHPLAGK--PMLEHVLDAARALGP--D--RIVVVVGHG-AE----QVKKALANP--NVEFVLQEEQLGTGHAVKQALPAL 86 (229)
T ss_pred cceeCCc--cHHHHHHHHHHhCCC--C--eEEEEECCC-HH----HHHHHhCCC--CcEEEECCCCCCCHHHHHHHHHhh
Confidence 3455454 688899999887442 2 666654322 22 334443332 466676666678888888888876
Q ss_pred C--CCEEEEEcCCCc-cCCCChHHHHHhhhcCCCEE
Q psy8674 354 R--GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIM 386 (439)
Q Consensus 354 ~--~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~ 386 (439)
. .+.++++++|.. +.+..+..+++.+.+.+..+
T Consensus 87 ~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~ 122 (229)
T cd02540 87 KDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADV 122 (229)
T ss_pred ccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcE
Confidence 5 689999999984 57888999998887654433
No 169
>PLN02458 transferase, transferring glycosyl groups
Probab=93.68 E-value=0.43 Score=44.42 Aligned_cols=102 Identities=12% Similarity=0.126 Sum_probs=64.4
Q ss_pred CCceEEEEEecC-CC--hhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCC---
Q psy8674 268 LPKASVILVFHN-EG--FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG--- 341 (439)
Q Consensus 268 ~p~vsiiip~~n-~~--~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g--- 341 (439)
.+.|-||.|||. +. ...|.+.-++|.. ..+++ -.|||+|++.-.. +.++.++.+-..+.+..+.+..
T Consensus 111 ~rlIivVTPTY~rR~~Q~a~LTRLahTL~l-Vp~pL--~WIVVEd~~~t~~----va~lLrrsGl~y~HL~~k~~~~~~~ 183 (346)
T PLN02458 111 RRLVIIVTPISTKDRYQGVLLRRLANTLRL-VPPPL--LWIVVEGQSDSEE----VSEMLRKTGIMYRHLVFKENFTDPE 183 (346)
T ss_pred CceEEEECCCCCCcchhHHHHHHHHHHHhc-CCCCc--eEEEEeCCCCCHH----HHHHHHHcCCceEEeccCCCCCCcc
Confidence 456899999997 33 1445555555543 33356 7899998764332 3444444443455554444431
Q ss_pred --HHHHHHHHHhhcC----CCEEEEEcCCCccCCCChHHHH
Q psy8674 342 --LIRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLL 376 (439)
Q Consensus 342 --~~~a~n~g~~~a~----~d~i~~ld~D~~~~~~~l~~l~ 376 (439)
....+|.|++..+ .-++.|.|+|..++-+.+++|-
T Consensus 184 ~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR 224 (346)
T PLN02458 184 AELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIR 224 (346)
T ss_pred chhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHh
Confidence 2456999998764 4689999999888877666643
No 170
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=93.63 E-value=0.14 Score=45.42 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC--CCHHHHHHHHHhhcCCCEEEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER--EGLIRTRSRGAKESRGEVIVF 360 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~--~g~~~a~n~g~~~a~~d~i~~ 360 (439)
+.|.++|++|.+.... |++||-+|=-.+ .++.+..+++-..+++.++.- .+-+..+-.|.+..+++ +++
T Consensus 32 ~ii~~~i~~L~~~gi~----e~vvV~~g~~~~----lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-fii 102 (239)
T COG1213 32 EIIYRTIENLAKAGIT----EFVVVTNGYRAD----LVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-FIL 102 (239)
T ss_pred EeHHHHHHHHHHcCCc----eEEEEeccchHH----HHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhcCc-EEE
Confidence 6889999999876643 889998776433 677777777756788776532 22345666777788877 788
Q ss_pred EcCCCccCCCChHHHHHhh
Q psy8674 361 LDAHCEVGLNWLPPLLAPI 379 (439)
Q Consensus 361 ld~D~~~~~~~l~~l~~~~ 379 (439)
+++|..++|..++.+++.-
T Consensus 103 ~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 103 VMSDHVYEPSILERLLEAP 121 (239)
T ss_pred EeCCEeecHHHHHHHHhCc
Confidence 9999999999999998864
No 171
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=93.40 E-value=1.5 Score=41.20 Aligned_cols=98 Identities=9% Similarity=0.176 Sum_probs=65.3
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH---HcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGA 350 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~g~~~a~n~g~ 350 (439)
.+|+++. ..|...|.++..... .+|+||-.....+ .++++.. .++.++.++..++..|.+.|...|.
T Consensus 28 Llpv~gk--PmI~~~l~~l~~aGi----~~I~ii~~~~~~~----~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~ 97 (292)
T PRK15480 28 LLPIYDK--PMIYYPLSTLMLAGI----RDILIISTPQDTP----RFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGE 97 (292)
T ss_pred EeEECCE--EHHHHHHHHHHHCCC----CEEEEEecCCchH----HHHHHHcCccccCceeEEEECCCCCCHHHHHHHHH
Confidence 7788887 488888888887543 2777665443222 2333332 2333577777777889999999888
Q ss_pred hhcCC-CEEEEEcCCCccCCCChHHHHHhhhcC
Q psy8674 351 KESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSD 382 (439)
Q Consensus 351 ~~a~~-d~i~~ld~D~~~~~~~l~~l~~~~~~~ 382 (439)
..... ++++ +.+|..+....+..+++.....
T Consensus 98 ~~i~~~~~~l-v~gD~i~~~~~l~~ll~~~~~~ 129 (292)
T PRK15480 98 EFIGGDDCAL-VLGDNIFYGHDLPKLMEAAVNK 129 (292)
T ss_pred HHhCCCCEEE-EECCeeeeccCHHHHHHHHHhC
Confidence 87654 5555 5577777666688888866543
No 172
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=93.09 E-value=0.64 Score=40.79 Aligned_cols=146 Identities=12% Similarity=0.052 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCcEEEEEecCCC-Chh----HHHHhhhhhcc-CcEEEEecCCcccCCCchHHHHHHHhcCC-CeEeeee
Q psy8674 4 KKLEDYIERFNGKVRLIRNTERE-GLI----RTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPV 76 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~-G~a----~arN~G~~~A~-g~~i~flD~D~~~~~~~l~~l~~~~~~~~-~~~v~~~ 76 (439)
+.|.+-.+++. .|-.+...+.+ +.+ .+.+-..+... .+|++.+|+|+.+.+.-|...+....... .....+.
T Consensus 39 ~~l~~E~~~y~-Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~ 117 (195)
T PF01762_consen 39 EALQEEAEKYG-DILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGG 117 (195)
T ss_pred HHhhhhhhhcC-ceEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccc
Confidence 33444455565 56556655443 232 45555555555 79999999999998777666666551111 1122111
Q ss_pred eecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCC
Q psy8674 77 IDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLV 156 (439)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~ 156 (439)
+..-.. . .......|..... .......-++..|++.++++++...+...-.....
T Consensus 118 ~~~~~~-~-----------~r~~~~kw~v~~~-------------~y~~~~yP~y~~G~~yvls~~~v~~i~~~~~~~~~ 172 (195)
T PF01762_consen 118 CIKNGP-P-----------IRDPSSKWYVSEE-------------EYPDDYYPPYCSGGGYVLSSDVVKRIYKASSHTPF 172 (195)
T ss_pred cccCCc-c-----------ccccccCceeeee-------------ecccccCCCcCCCCeEEecHHHHHHHHHHhhcCCC
Confidence 111000 0 0001112221110 01111233466899999999999888754444444
Q ss_pred ccchhhHHHHHHHHhCCcE
Q psy8674 157 WGGENFELSFKIWMCGGSI 175 (439)
Q Consensus 157 ~~~ED~Dl~~Rl~~~G~~i 175 (439)
...||+-+++=+.+.|.+.
T Consensus 173 ~~~eDv~iGi~~~~~~i~~ 191 (195)
T PF01762_consen 173 FPLEDVFIGILAEKLGIKP 191 (195)
T ss_pred CCchHHHHHHHHHHCCCCc
Confidence 4569999998888888763
No 173
>PLN02195 cellulose synthase A
Probab=93.06 E-value=0.26 Score=52.64 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=45.3
Q ss_pred CcEEEEEecCCCC-----hhHHHHhhhhhc----cCcEEEEecCCcccCC-CchHHHHHHHhc
Q psy8674 15 GKVRLIRNTEREG-----LIRTRSRGAKES----RGEVIVFLDAHCEVGL-NWLPPLLAPIYS 67 (439)
Q Consensus 15 ~~i~~i~~~~n~G-----~a~arN~G~~~A----~g~~i~flD~D~~~~~-~~l~~l~~~~~~ 67 (439)
|++.+|..+++.| .|+|.|.+++.+ .|+||+.||+|..+.+ ++|.+.+-.|..
T Consensus 419 P~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D 481 (977)
T PLN02195 419 PRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMD 481 (977)
T ss_pred ceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccC
Confidence 4899999998887 489999999855 5999999999998854 799998888874
No 174
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=93.06 E-value=0.52 Score=41.19 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC--CCCHHHHHHHHHhhcCCC
Q psy8674 279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGLIRTRSRGAKESRGE 356 (439)
Q Consensus 279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~g~~~a~n~g~~~a~~d 356 (439)
+.. ..|..+++.+. .. ..+|+||-+.. .+ .+. .. .++++.... ..|...+...|++....+
T Consensus 28 ~g~-~ll~~~i~~l~-~~----~~~i~vv~~~~----~~-~~~----~~--~~~~v~~~~~~~~g~~~~i~~~l~~~~~~ 90 (193)
T PRK00317 28 NGK-PLIQHVIERLA-PQ----VDEIVINANRN----LA-RYA----AF--GLPVIPDSLADFPGPLAGILAGLKQARTE 90 (193)
T ss_pred CCE-EHHHHHHHHHh-hh----CCEEEEECCCC----hH-HHH----hc--CCcEEeCCCCCCCCCHHHHHHHHHhcCCC
Confidence 445 68888888876 21 12777774322 11 121 11 244554432 367778888899888889
Q ss_pred EEEEEcCCCc-cCCCChHHHHHhhhcCCCEEEE
Q psy8674 357 VIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTV 388 (439)
Q Consensus 357 ~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~ 388 (439)
+++++++|.- ++++.+..+++.+.+....+++
T Consensus 91 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 123 (193)
T PRK00317 91 WVLVVPCDTPFIPPDLVARLAQAAGKDDADVAW 123 (193)
T ss_pred eEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE
Confidence 9999999996 5899999999987655544443
No 175
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=92.97 E-value=2 Score=38.00 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=62.8
Q ss_pred EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC
Q psy8674 275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR 354 (439)
Q Consensus 275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~ 354 (439)
+|..+ . ..|..+|+++...... +|+||-+...+. ..+.+.... ..+..+.++..+...|.+.+...++....
T Consensus 24 l~v~g-~-pli~~~l~~l~~~g~~----~i~vv~~~~~~~-i~~~~~~~~-~~~~~i~~~~~~~~~g~~~al~~~~~~~~ 95 (217)
T cd04181 24 LPIAG-K-PILEYIIERLARAGID----EIILVVGYLGEQ-IEEYFGDGS-KFGVNIEYVVQEEPLGTAGAVRNAEDFLG 95 (217)
T ss_pred cEECC-e-eHHHHHHHHHHHCCCC----EEEEEeccCHHH-HHHHHcChh-hcCceEEEEeCCCCCccHHHHHHhhhhcC
Confidence 34444 4 6888899988875422 666666543221 221222110 02234666655566788899999988877
Q ss_pred CCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 355 GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 355 ~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
.+.++++++|..+..+ +.++++.....+.
T Consensus 96 ~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~ 124 (217)
T cd04181 96 DDDFLVVNGDVLTDLD-LSELLRFHREKGA 124 (217)
T ss_pred CCCEEEEECCeecCcC-HHHHHHHHHhcCC
Confidence 7899999999987665 6666665554443
No 176
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=92.85 E-value=2.2 Score=37.87 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=61.9
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA 350 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~v~~i~~~~~~g~~~a~n~g~ 350 (439)
++|.-+. ..|...|+.+.+.... +|+|+-+... + .+.++... ++..+.+.......|.+.+.-.++
T Consensus 23 ll~i~g~--pli~~~l~~l~~~g~~----~v~vv~~~~~-~----~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~ 91 (223)
T cd06915 23 LAPVAGR--PFLEYLLEYLARQGIS----RIVLSVGYLA-E----QIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNAL 91 (223)
T ss_pred ccEECCc--chHHHHHHHHHHCCCC----EEEEEcccCH-H----HHHHHHcCccccCceEEEEECCCCCcchHHHHHHH
Confidence 3444454 5888888888765321 6666654332 2 22222221 122344444456678888888888
Q ss_pred hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
+....+.++++++|..++ ..+..+++.+.....
T Consensus 92 ~~~~~~~~lv~~~D~~~~-~~~~~~l~~~~~~~~ 124 (223)
T cd06915 92 PKLPEDQFLVLNGDTYFD-VDLLALLAALRASGA 124 (223)
T ss_pred hhcCCCCEEEEECCcccC-CCHHHHHHHHHhCCC
Confidence 887778899999999774 457888887765444
No 177
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=92.84 E-value=1.3 Score=38.61 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHHHHHHHHhhc---C
Q psy8674 279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKES---R 354 (439)
Q Consensus 279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~a~n~g~~~a---~ 354 (439)
+.. ..|..+++.++.... .+|+||-+... .... .+...... ...+.++..+. ..|.+.+.-.|++.+ .
T Consensus 24 ~g~-~ll~~~i~~~~~~~~----~~i~vv~~~~~-~~~~-~~~~~~~~-~~~~~~~~~~~~~~G~~~si~~gl~~~~~~~ 95 (190)
T TIGR03202 24 GET-TLGSASLKTALSSRL----SKVIVVIGEKY-AHLS-WLDPYLLA-DERIMLVCCRDACEGQAHSLKCGLRKAEAMG 95 (190)
T ss_pred CCc-cHHHHHHHHHHhCCC----CcEEEEeCCcc-chhh-hhhHhhhc-CCCeEEEECCChhhhHHHHHHHHHHHhccCC
Confidence 445 688888877655321 27777765432 2122 22221111 12355554333 357788888898875 4
Q ss_pred CCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEeee
Q psy8674 355 GEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 355 ~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
.++++++++|.-+ +++.+..|++.+...+..++++..
T Consensus 96 ~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~~~~ 133 (190)
T TIGR03202 96 ADAVVILLADQPFLTADVINALLALAKRRPDDYVAASF 133 (190)
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEEEec
Confidence 7999999999985 799999999988766655556544
No 178
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=92.45 E-value=0.6 Score=42.50 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=70.1
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC---CcEEEEEcCCCCCHHHHHHHHH
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN---GKVRLIRNTEREGLIRTRSRGA 350 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~---~~v~~i~~~~~~g~~~a~n~g~ 350 (439)
.+|..+.. ..|...|+.+...... ++|+|-.+.... .+.++..... ..+.++..+...|.+.|.-.+.
T Consensus 24 ll~i~g~~-pli~~~l~~l~~~g~~----~ii~V~~~~~~~----~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~ 94 (248)
T PF00483_consen 24 LLPIGGKY-PLIDYVLENLANAGIK----EIIVVVNGYKEE----QIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQAL 94 (248)
T ss_dssp GSEETTEE-EHHHHHHHHHHHTTCS----EEEEEEETTTHH----HHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTH
T ss_pred cceecCCC-cchhhhhhhhcccCCc----eEEEEEeecccc----cccccccccccccccceeeecccccchhHHHHHHH
Confidence 45666775 6888899988875432 755555544433 3334433322 2477877788889999999999
Q ss_pred hhcCCCE----EEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 351 KESRGEV----IVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 351 ~~a~~d~----i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
.....+. ++++.+|..++. .+..+++...+...
T Consensus 95 ~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~ 131 (248)
T PF00483_consen 95 DFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNA 131 (248)
T ss_dssp HHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSS
T ss_pred HHhhhccccceEEEEeccccccc-hhhhHHHhhhcccc
Confidence 9888665 899999998877 67888877765444
No 179
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=92.38 E-value=1.6 Score=39.47 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=60.2
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|..+. ..|..+|+++..+... +|+||-....+ ...+.+.++....+..+.+.......|.+.+...+....
T Consensus 25 llpv~g~--pli~~~l~~l~~~g~~----~v~iv~~~~~~-~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~ 97 (233)
T cd06425 25 LVEFCNK--PMIEHQIEALAKAGVK----EIILAVNYRPE-DMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLL 97 (233)
T ss_pred cCeECCc--chHHHHHHHHHHCCCc----EEEEEeeeCHH-HHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHh
Confidence 3455554 5888999998876432 56666543332 222234333122221233322345578888888888776
Q ss_pred CC--CEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 354 RG--EVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 354 ~~--d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
+. +-++++++|.....+ +..+++.....+.
T Consensus 98 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~ 129 (233)
T cd06425 98 GDDDEPFFVLNSDVICDFP-LAELLDFHKKHGA 129 (233)
T ss_pred ccCCCCEEEEeCCEeeCCC-HHHHHHHHHHcCC
Confidence 53 446777999877655 6888887765444
No 180
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=92.38 E-value=0.46 Score=39.98 Aligned_cols=68 Identities=16% Similarity=0.330 Sum_probs=52.9
Q ss_pred HHHHHHhcCCcEEEEEec-CCCChhHHHHhhhhhc-cCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeee
Q psy8674 6 LEDYIERFNGKVRLIRNT-EREGLIRTRSRGAKES-RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVP 75 (439)
Q Consensus 6 l~~~~~~~~~~i~~i~~~-~n~G~a~arN~G~~~A-~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 75 (439)
+.+++.+. .++++.++ ...|...+.=.|+... ..+.++++.+|.. ++++.++.+++.+++++..++++
T Consensus 51 ~~~~~~~~--~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~ 121 (160)
T PF12804_consen 51 IYEYLERY--GIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVP 121 (160)
T ss_dssp HHHHHTTT--TSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHhcc--CceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEE
Confidence 44444444 48888865 4689999999999999 8999999999996 69999999999998766655543
No 181
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=92.28 E-value=2 Score=40.19 Aligned_cols=99 Identities=9% Similarity=0.131 Sum_probs=63.3
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH---HcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGA 350 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~g~~~a~n~g~ 350 (439)
.+|+++. ..|.-.|..+...... +|+||-.....+ .++++.. .++-++.++..++..|.+.|.-.|.
T Consensus 24 Llpv~gk--PmI~~~L~~l~~aGi~----~I~iv~~~~~~~----~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~ 93 (286)
T TIGR01207 24 LLPIYDK--PMIYYPLSTLMLAGIR----DILIISTPQDTP----RFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGE 93 (286)
T ss_pred eeEECCE--EhHHHHHHHHHHCCCC----EEEEEecCCcHH----HHHHHhccccccCceEEEEEccCCCCHHHHHHHHH
Confidence 6788886 5888888888875432 676664332222 2233332 2233566676667789999999998
Q ss_pred hhcCCCEEEEEcCCCccCCCChHHHHHhhhcC
Q psy8674 351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD 382 (439)
Q Consensus 351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~ 382 (439)
.....+-++++.+|..+....+..+++.....
T Consensus 94 ~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~ 125 (286)
T TIGR01207 94 DFIGGDPSALVLGDNIFYGHDLSDLLKRAAAR 125 (286)
T ss_pred HHhCCCCEEEEECCEeccccCHHHHHHHHHhc
Confidence 87664434444588777667788888766443
No 182
>PLN02189 cellulose synthase
Probab=92.13 E-value=1.2 Score=48.08 Aligned_cols=93 Identities=8% Similarity=0.147 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHh--cCCcCCcceEEEEeCCCC--------hhhHHHHHHHHHH----------HcCCcEEEEEcCCCCC-
Q psy8674 283 SSLMRTVHSIIK--RTPAQYLEEIILVDDFSS--------KADLDQKLEDYIQ----------RFNGKVRLIRNTEREG- 341 (439)
Q Consensus 283 ~~l~~~l~sl~~--q~~~~~~~eiivvdd~s~--------d~t~~~~~~~~~~----------~~~~~v~~i~~~~~~g- 341 (439)
+.++..++++.+ +.++. |--+.+||+. ..+ +++-+.+ +.| .+.++..+++.|
T Consensus 439 Ee~kvRI~~l~a~~~~~p~---~~~~m~dGt~W~g~~~~dHp~---IiQVll~~~~~~d~~g~~lP-~LVYVSREKrPg~ 511 (1040)
T PLN02189 439 EEFKVRINAIVAKAQKVPP---EGWIMQDGTPWPGNNTRDHPG---MIQVFLGHSGGHDTEGNELP-RLVYVSREKRPGF 511 (1040)
T ss_pred HHHHHHHHHHHhhcCccCC---ccceeccCccCCCCCCCCCHH---HHHHHhcCCCCccccccccc-eeEEEeccCCCCC
Confidence 555666666653 23332 4466788871 222 3443332 122 477887777655
Q ss_pred ----HHHHHHHHHh----hcCCCEEEEEcCCCccC-CCChHHHHHhhhcC
Q psy8674 342 ----LIRTRSRGAK----ESRGEVIVFLDAHCEVG-LNWLPPLLAPIYSD 382 (439)
Q Consensus 342 ----~~~a~n~g~~----~a~~d~i~~ld~D~~~~-~~~l~~l~~~~~~~ 382 (439)
+++|+|..++ .++++||+.+|.|..+. +..+.+.+-.|.+.
T Consensus 512 ~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp 561 (1040)
T PLN02189 512 QHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDP 561 (1040)
T ss_pred CcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCC
Confidence 8999999995 45799999999999985 69999999988875
No 183
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=92.00 E-value=1.1 Score=38.58 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=64.8
Q ss_pred CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhhcCCCE
Q psy8674 279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKESRGEV 357 (439)
Q Consensus 279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~a~~d~ 357 (439)
+.. ..|..+++.+... . . +|+||-+..... + ... .++++..+ ...|...+...|++....++
T Consensus 24 ~g~-~ll~~~i~~l~~~-~--~--~iivv~~~~~~~--------~-~~~--~~~~v~~~~~~~G~~~si~~~l~~~~~~~ 86 (181)
T cd02503 24 GGK-PLLEHVLERLKPL-V--D--EVVISANRDQER--------Y-ALL--GVPVIPDEPPGKGPLAGILAALRAAPADW 86 (181)
T ss_pred CCE-EHHHHHHHHHHhh-c--C--EEEEECCCChHH--------H-hhc--CCcEeeCCCCCCCCHHHHHHHHHhcCCCe
Confidence 345 6888888887753 1 2 677775433211 1 111 35666554 35788899999999988999
Q ss_pred EEEEcCCCc-cCCCChHHHHHhhhcCCCEEEEee
Q psy8674 358 IVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPV 390 (439)
Q Consensus 358 i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~ 390 (439)
++++.+|.- ++++.+..+++.+ +.+..+++|.
T Consensus 87 vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~ 119 (181)
T cd02503 87 VLVLACDMPFLPPELLERLLAAA-EEGADAVVPK 119 (181)
T ss_pred EEEEeCCcCCCCHHHHHHHHHhh-ccCCCEEEEe
Confidence 999999997 5899999999888 4444555554
No 184
>PLN02893 Cellulose synthase-like protein
Probab=91.87 E-value=0.46 Score=49.68 Aligned_cols=55 Identities=7% Similarity=-0.019 Sum_probs=46.5
Q ss_pred cCCcEEEEEcCCC-----CCHHHHHHHHHhh----cCCCEEEEEcCCCcc-CCCChHHHHHhhhcC
Q psy8674 327 FNGKVRLIRNTER-----EGLIRTRSRGAKE----SRGEVIVFLDAHCEV-GLNWLPPLLAPIYSD 382 (439)
Q Consensus 327 ~~~~v~~i~~~~~-----~g~~~a~n~g~~~----a~~d~i~~ld~D~~~-~~~~l~~l~~~~~~~ 382 (439)
.| .+.++..+++ .-+++|+|.+++. ++|++|+.+|+|... .|+.+.+.+-.|.+.
T Consensus 263 lP-~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp 327 (734)
T PLN02893 263 MP-NLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDP 327 (734)
T ss_pred CC-ceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCC
Confidence 44 7888888776 3389999999995 779999999999997 589999999988764
No 185
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=91.32 E-value=0.23 Score=43.33 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=31.8
Q ss_pred EEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeec
Q psy8674 357 VIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID 395 (439)
Q Consensus 357 ~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~ 395 (439)
||+++|+|+.++++++++++..+++++.+++.+.+...+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~ 39 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN 39 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC
Confidence 689999999999999999999999656667766555443
No 186
>PLN02189 cellulose synthase
Probab=91.21 E-value=0.56 Score=50.56 Aligned_cols=53 Identities=8% Similarity=0.103 Sum_probs=46.0
Q ss_pred CcEEEEEecCCCC-----hhHHHHhhhhh----ccCcEEEEecCCccc-CCCchHHHHHHHhc
Q psy8674 15 GKVRLIRNTEREG-----LIRTRSRGAKE----SRGEVIVFLDAHCEV-GLNWLPPLLAPIYS 67 (439)
Q Consensus 15 ~~i~~i~~~~n~G-----~a~arN~G~~~----A~g~~i~flD~D~~~-~~~~l~~l~~~~~~ 67 (439)
|++.+|..+++.| .|+|.|..++. ..|+||+-||+|..+ +|..|.+.+-.|..
T Consensus 498 P~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflD 560 (1040)
T PLN02189 498 PRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 560 (1040)
T ss_pred ceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcC
Confidence 4899999999888 59999999954 479999999999999 56999999988874
No 187
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=91.21 E-value=0.79 Score=37.13 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=46.8
Q ss_pred ceEEEEEecCCChhHHHHHHHHH---H-hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674 270 KASVILVFHNEGFSSLMRTVHSI---I-KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 345 (439)
Q Consensus 270 ~vsiiip~~n~~~~~l~~~l~sl---~-~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a 345 (439)
++.||||.+|++ +.|...|..+ + +|. ..+.|+||+-..+ ..++.|.-
T Consensus 48 kvAiIIPyRdR~-~hL~~fl~~l~~~L~rQ~---~~y~I~vieQ~~~-------------------------~~FNRg~L 98 (136)
T PF13733_consen 48 KVAIIIPYRDRE-EHLRIFLPHLHPFLQRQQ---LDYRIFVIEQVDN-------------------------GPFNRGKL 98 (136)
T ss_dssp EEEEEEEESS-H-HHHHHHHHHHHHHHHHTT----EEEEEEEEE-SS-------------------------S---HHHH
T ss_pred ceEEEEEeCCHH-HHHHHHHHHHHHHHhhCc---ceEEEEEEeeccC-------------------------CCCchhhh
Confidence 799999999999 8888877654 3 333 2348888864322 12346778
Q ss_pred HHHHHhhcC----CCEEEEEcCCCccCCC
Q psy8674 346 RSRGAKESR----GEVIVFLDAHCEVGLN 370 (439)
Q Consensus 346 ~n~g~~~a~----~d~i~~ld~D~~~~~~ 370 (439)
+|.|+..|. .|+++|-|.|..+..+
T Consensus 99 ~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 99 MNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhHHHHHHhhccCCCEEEEecccccccCC
Confidence 888877663 6899999999887544
No 188
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=91.16 E-value=4 Score=38.10 Aligned_cols=105 Identities=12% Similarity=0.080 Sum_probs=64.2
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC---CC------C
Q psy8674 270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT---ER------E 340 (439)
Q Consensus 270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~---~~------~ 340 (439)
.++||....|-. ..+..+|.|++.....++ .+-|++|+.+++..+ .+.+.....+..+.++..+ .. .
T Consensus 2 ~~~iv~~~~~y~-~~~~~~i~Sil~n~~~~~--~fhii~d~~s~~~~~-~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~ 77 (280)
T cd06431 2 HVAIVCAGYNAS-RDVVTLVKSVLFYRRNPL--HFHLITDEIARRILA-TLFQTWMVPAVEVSFYNAEELKSRVSWIPNK 77 (280)
T ss_pred EEEEEEccCCcH-HHHHHHHHHHHHcCCCCE--EEEEEECCcCHHHHH-HHHHhccccCcEEEEEEhHHhhhhhccCccc
Confidence 467787775545 888999999998754444 888998887766555 3433333333345555432 10 1
Q ss_pred CHHHH----HHHHHhhc--CCCEEEEEcCCCccCCCChHHHHHhh
Q psy8674 341 GLIRT----RSRGAKES--RGEVIVFLDAHCEVGLNWLPPLLAPI 379 (439)
Q Consensus 341 g~~~a----~n~g~~~a--~~d~i~~ld~D~~~~~~~l~~l~~~~ 379 (439)
..+.. +-..-+.- .-+-++.||+|..+..+ |..|.+.+
T Consensus 78 ~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d-i~eL~~~~ 121 (280)
T cd06431 78 HYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATD-IAELWKIF 121 (280)
T ss_pred chhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC-HHHHHHHh
Confidence 11111 22222333 36899999999988654 77777764
No 189
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=90.98 E-value=4 Score=36.35 Aligned_cols=97 Identities=10% Similarity=0.097 Sum_probs=58.7
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhh
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKE 352 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~ 352 (439)
.+|..+. ..|...|+++.+.... +|+||-+... ....+.+.. ...+..+.+.... +..|.+.+...++..
T Consensus 24 llpi~g~--~li~~~l~~l~~~gi~----~i~iv~~~~~-~~i~~~~~~--~~~~~~i~~~~~~~~~~g~~~~l~~~~~~ 94 (221)
T cd06422 24 LVPVAGK--PLIDHALDRLAAAGIR----RIVVNTHHLA-DQIEAHLGD--SRFGLRITISDEPDELLETGGGIKKALPL 94 (221)
T ss_pred eeeECCE--EHHHHHHHHHHHCCCC----EEEEEccCCH-HHHHHHHhc--ccCCceEEEecCCCcccccHHHHHHHHHh
Confidence 4455554 6888999998876432 6666654332 222212221 1122234444433 456788889888888
Q ss_pred cCCCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674 353 SRGEVIVFLDAHCEVGLNWLPPLLAPIY 380 (439)
Q Consensus 353 a~~d~i~~ld~D~~~~~~~l~~l~~~~~ 380 (439)
...+.++++++|..+..+.. .+++...
T Consensus 95 ~~~~~~lv~~~D~i~~~~~~-~~~~~~~ 121 (221)
T cd06422 95 LGDEPFLVVNGDILWDGDLA-PLLLLHA 121 (221)
T ss_pred cCCCCEEEEeCCeeeCCCHH-HHHHHHH
Confidence 76688999999998877644 4555443
No 190
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=90.93 E-value=2.2 Score=39.80 Aligned_cols=107 Identities=16% Similarity=0.100 Sum_probs=70.0
Q ss_pred eEEEE-EecC-CC-hhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC---------
Q psy8674 271 ASVIL-VFHN-EG-FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--------- 338 (439)
Q Consensus 271 vsiii-p~~n-~~-~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~--------- 338 (439)
++|++ |.|. +. +..|.+-|+....+.. ..+++-++++++...+ +|+.+.+. +.++++..+.
T Consensus 3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~G~----~~~~~Y~~~~~~~~~~-vL~~Y~~~--g~v~~~~w~~~~~~~~~~~ 75 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWLQLIEWIEYHRLLGV----DHFYFYDNSSSPSVRK-VLKEYERS--GYVEVIPWPLRPKFPDFPS 75 (285)
T ss_pred EEEEccchhcccccHHHHHHHHHHHHHhCC----CEEEEEEccCCHHHHH-hHHHHhhc--CeEEEEEcccccccCCccc
Confidence 56666 5554 43 1366666666555422 2677777778777655 89988765 3677776640
Q ss_pred ----------CCCHHHHHHHHHhhcC--CCEEEEEcCCCccCCCC----hHHHHHhhhcCCC
Q psy8674 339 ----------REGLIRTRSRGAKESR--GEVIVFLDAHCEVGLNW----LPPLLAPIYSDRK 384 (439)
Q Consensus 339 ----------~~g~~~a~n~g~~~a~--~d~i~~ld~D~~~~~~~----l~~l~~~~~~~~~ 384 (439)
..|...+.|-.+-..+ .+|++|+|-|..+-|.. .+.+...+++.+.
T Consensus 76 ~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~ 137 (285)
T PF01697_consen 76 PFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPN 137 (285)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhccc
Confidence 1245667777776655 78999999999975444 6777777776544
No 191
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=90.74 E-value=4.3 Score=36.66 Aligned_cols=88 Identities=11% Similarity=0.203 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc--CCCCCHHHHHHHHHhhcCCCEEEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN--TEREGLIRTRSRGAKESRGEVIVF 360 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~g~~~a~n~g~~~a~~d~i~~ 360 (439)
..|..+++.+.+.... .+|+|+-+. + .+.++.+.++ ++++.. ....|.+ ..-.++.....+.+++
T Consensus 28 Pli~~~i~~l~~~~~~---~~ivv~t~~---~----~i~~~~~~~~--~~v~~~~~~~~~g~~-~~~~a~~~~~~d~~lv 94 (238)
T PRK13368 28 PMIQHVYERAAQAAGV---EEVYVATDD---Q----RIEDAVEAFG--GKVVMTSDDHLSGTD-RLAEVMLKIEADIYIN 94 (238)
T ss_pred CHHHHHHHHHHhcCCC---CeEEEECCh---H----HHHHHHHHcC--CeEEecCccCCCccH-HHHHHHHhCCCCEEEE
Confidence 5888888888775221 267776431 2 2333344443 333332 2223444 3333555555689999
Q ss_pred EcCCCc-cCCCChHHHHHhhhcCC
Q psy8674 361 LDAHCE-VGLNWLPPLLAPIYSDR 383 (439)
Q Consensus 361 ld~D~~-~~~~~l~~l~~~~~~~~ 383 (439)
+++|.- +.+..+..+++.+...+
T Consensus 95 ~~~D~P~i~~~~i~~l~~~~~~~~ 118 (238)
T PRK13368 95 VQGDEPMIRPRDIDTLIQPMLDDP 118 (238)
T ss_pred EcCCcCcCCHHHHHHHHHHHHHCC
Confidence 999984 68999999999886544
No 192
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=90.64 E-value=4.4 Score=36.41 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC---CCEEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR---GEVIV 359 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~---~d~i~ 359 (439)
..++.+|+.++.... ..+||||-+...+........ ...+.++.++. ...........|+...+ .+|++
T Consensus 33 pll~~tl~~f~~~~~---i~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v~--GG~~R~~SV~~gL~~~~~~~~~~Vl 104 (230)
T COG1211 33 PLLEHTLEAFLESPA---IDEIVVVVSPEDDPYFEKLPK---LSADKRVEVVK--GGATRQESVYNGLQALSKYDSDWVL 104 (230)
T ss_pred EehHHHHHHHHhCcC---CCeEEEEEChhhhHHHHHhhh---hccCCeEEEec--CCccHHHHHHHHHHHhhccCCCEEE
Confidence 578889988876543 238999877766655442222 22234677774 33346777777888776 78999
Q ss_pred EEcCCCcc-CCCChHHHHHhhhcCCC-EEEEeeeeee
Q psy8674 360 FLDAHCEV-GLNWLPPLLAPIYSDRK-IMTVPVIDGI 394 (439)
Q Consensus 360 ~ld~D~~~-~~~~l~~l~~~~~~~~~-~~v~~~~~~~ 394 (439)
+-|+==-+ +++.|++++........ +.+.|..|.+
T Consensus 105 vHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~DTi 141 (230)
T COG1211 105 VHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTL 141 (230)
T ss_pred EeccccCCCCHHHHHHHHHhhccCCcEEEEeeccCcE
Confidence 88887554 68888999955554333 5566776665
No 193
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=90.63 E-value=4.7 Score=37.83 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=66.5
Q ss_pred CceEEEEEecCCC-hhHHHHHHHHHHhcCCcCCcce-EEEEeCCCChhh-HHHHHHHHHHHc-----CCcEEEEEcCCC-
Q psy8674 269 PKASVILVFHNEG-FSSLMRTVHSIIKRTPAQYLEE-IILVDDFSSKAD-LDQKLEDYIQRF-----NGKVRLIRNTER- 339 (439)
Q Consensus 269 p~vsiiip~~n~~-~~~l~~~l~sl~~q~~~~~~~e-iivvdd~s~d~t-~~~~~~~~~~~~-----~~~v~~i~~~~~- 339 (439)
++++|=||+-.++ ...|..+|.||+....+.-.-+ +|||-=+.+|.+ ...+.+.+...+ .+.+.+|..+..
T Consensus 52 ~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~~ 131 (297)
T PF04666_consen 52 KKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPSY 131 (297)
T ss_pred CeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEeccccc
Confidence 4588888887543 2789999999998765532111 222222223322 222333333221 124555554332
Q ss_pred -------------------------CCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 340 -------------------------EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 340 -------------------------~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
..++-.++.+ ...|+|++.|.+|....++|+..+...+..-..
T Consensus 132 Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~--~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~ 199 (297)
T PF04666_consen 132 YPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYC--QNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWES 199 (297)
T ss_pred CCChhhhhhcccChhhhhhHHHhhcccHHHHHHHH--HhcCCeEEEecCCeEechhHHHHHHHHHHHhcC
Confidence 1123333333 235899999999999999999999998876443
No 194
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=90.39 E-value=4.3 Score=37.20 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=62.2
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|.-+. ..|...|+++.+.... .+|+||-.... ....+.+..........+.++...+..|.+.+...+....
T Consensus 25 llpv~g~--plI~~~l~~l~~~~gi---~~i~iv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l 98 (257)
T cd06428 25 LFPVAGK--PMIHHHIEACAKVPDL---KEVLLIGFYPE-SVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQI 98 (257)
T ss_pred cCeECCe--eHHHHHHHHHHhcCCC---cEEEEEecCCH-HHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHh
Confidence 4555565 5888889888863211 16777755432 2222233322212222455555555678887777666553
Q ss_pred ---CCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 354 ---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 354 ---~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
..+.++++.+|..... .+..+++.......
T Consensus 99 ~~~~~~~~lv~~gD~~~~~-dl~~~~~~h~~~~~ 131 (257)
T cd06428 99 LAGNPSAFFVLNADVCCDF-PLQELLEFHKKHGA 131 (257)
T ss_pred hccCCCCEEEEcCCeecCC-CHHHHHHHHHHcCC
Confidence 2467888999988654 48888887765544
No 195
>PLN02917 CMP-KDO synthetase
Probab=90.11 E-value=4 Score=38.35 Aligned_cols=92 Identities=12% Similarity=0.168 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc--CCCCCHHHHHHHHHhhcC--CCEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN--TEREGLIRTRSRGAKESR--GEVI 358 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~g~~~a~n~g~~~a~--~d~i 358 (439)
..|...++.+...... . +|||+ . +++.. ......+ .+.++.. ....|.+.+ ..|++... .|++
T Consensus 73 PLL~~vi~~a~~~~~~-~--~VVV~-~--~~e~I----~~~~~~~--~v~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~V 139 (293)
T PLN02917 73 PMIQRTWERAKLATTL-D--HIVVA-T--DDERI----AECCRGF--GADVIMTSESCRNGTERC-NEALKKLEKKYDIV 139 (293)
T ss_pred EHHHHHHHHHHcCCCC-C--EEEEE-C--ChHHH----HHHHHHc--CCEEEeCCcccCCchHHH-HHHHHhccCCCCEE
Confidence 5677777777654321 1 44443 2 22222 2233333 3444433 233455555 45666553 6899
Q ss_pred EEEcCCCcc-CCCChHHHHHhhhcCCCEEE
Q psy8674 359 VFLDAHCEV-GLNWLPPLLAPIYSDRKIMT 387 (439)
Q Consensus 359 ~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v 387 (439)
+++++|.-+ +++.|..+++.+.++...++
T Consensus 140 lil~gD~PlI~~~tI~~li~~~~~~~~~iv 169 (293)
T PLN02917 140 VNIQGDEPLIEPEIIDGVVKALQAAPDAVF 169 (293)
T ss_pred EEecCCcCCCCHHHHHHHHHHHHhcCCceE
Confidence 999999984 89999999998876554333
No 196
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=89.91 E-value=3.4 Score=39.64 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=76.3
Q ss_pred eEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCCh-hhHHH----------------HHHHHHHH-------
Q psy8674 271 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSK-ADLDQ----------------KLEDYIQR------- 326 (439)
Q Consensus 271 vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d-~t~~~----------------~~~~~~~~------- 326 (439)
|-|.|.+|... .+..+|.+++++.......-|-||+-...+ ..... ....+...
T Consensus 2 IFvsiasyRD~--~c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 79 (343)
T PF11397_consen 2 IFVSIASYRDP--ECAPTLKDLFARATNPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWP 79 (343)
T ss_pred EEEEEeeecCc--hHHHHHHHHHHhcCCCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhcccccccc
Confidence 66889999876 488889998877544334455555543222 21100 01111111
Q ss_pred ------cCCcEEEEEcC--CCCCHHHHHHHHHhhcCC-CEEEEEcCCCccCCCChHHHHHhhhc--CCCEEEE
Q psy8674 327 ------FNGKVRLIRNT--EREGLIRTRSRGAKESRG-EVIVFLDAHCEVGLNWLPPLLAPIYS--DRKIMTV 388 (439)
Q Consensus 327 ------~~~~v~~i~~~--~~~g~~~a~n~g~~~a~~-d~i~~ld~D~~~~~~~l~~l~~~~~~--~~~~~v~ 388 (439)
...+|++++.+ ...|...|+..+.+.-+| +|++-+|+.+.+.++|=+.|++.+.. ++..+..
T Consensus 80 ~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS 152 (343)
T PF11397_consen 80 DGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLS 152 (343)
T ss_pred cccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEe
Confidence 11356666554 458999999999988775 69999999999999999999998876 3335555
No 197
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=89.84 E-value=2.9 Score=36.51 Aligned_cols=96 Identities=18% Similarity=0.229 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC--CCEEEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVF 360 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~--~d~i~~ 360 (439)
..|..+++.+..... . +|+||.+. ... .++.... .+.++..+. .|.+.++..|++... ++.+++
T Consensus 31 ~ll~~~l~~l~~~~~--~--~vvvv~~~---~~~----~~~~~~~--~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv 96 (195)
T TIGR03552 31 AMLRDVITALRGAGA--G--AVLVVSPD---PAL----LEAARNL--GAPVLRDPG-PGLNNALNAALAEAREPGGAVLI 96 (195)
T ss_pred HHHHHHHHHHHhcCC--C--CEEEECCC---HHH----HHHHHhc--CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEE
Confidence 445555665554321 1 56666542 111 2222222 466775544 489999999988754 468999
Q ss_pred EcCCCc-cCCCChHHHHHhhhcCCCEEEEeeeee
Q psy8674 361 LDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVIDG 393 (439)
Q Consensus 361 ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~ 393 (439)
+-+|.- ++++.+..+++.+.. ...+++|..+.
T Consensus 97 ~~~D~P~l~~~~i~~l~~~~~~-~~~vi~p~~~G 129 (195)
T TIGR03552 97 LMADLPLLTPRELKRLLAAATE-GDVVIAPDRGG 129 (195)
T ss_pred EeCCCCCCCHHHHHHHHHhccc-CCEEEEecCCC
Confidence 999988 589999999998754 45677776544
No 198
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=89.82 E-value=10 Score=34.03 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=58.7
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|.-+. ..|...|+++...... +|+||-+. ......+.+.+.. .++..+.++......|.+.+...|....
T Consensus 25 l~~i~g~--~li~~~l~~l~~~~~~----~i~vv~~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~~~g~~~sl~~a~~~i 96 (236)
T cd04189 25 LIPVAGK--PIIQYAIEDLREAGIE----DIGIVVGP-TGEEIKEALGDGS-RFGVRITYILQEEPLGLAHAVLAARDFL 96 (236)
T ss_pred eeEECCc--chHHHHHHHHHHCCCC----EEEEEcCC-CHHHHHHHhcchh-hcCCeEEEEECCCCCChHHHHHHHHHhc
Confidence 4454444 6888888888865322 67766554 2222221222211 1223466665555678888888888876
Q ss_pred CCCEEEEEcCCCccCCCChHHHHHhhhcCC
Q psy8674 354 RGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 383 (439)
Q Consensus 354 ~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~ 383 (439)
..+-++++.+|..+..+ +..++..+....
T Consensus 97 ~~~~~li~~~D~~~~~~-~~~~~~~~~~~~ 125 (236)
T cd04189 97 GDEPFVVYLGDNLIQEG-ISPLVRDFLEED 125 (236)
T ss_pred CCCCEEEEECCeecCcC-HHHHHHHHHhcC
Confidence 53345558889887665 555666554433
No 199
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=89.82 E-value=13 Score=32.73 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=46.0
Q ss_pred HHHHHHHHhc---CCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeE
Q psy8674 4 KKLEDYIERF---NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM 72 (439)
Q Consensus 4 ~~l~~~~~~~---~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~ 72 (439)
+.+.+++.+. ...+.+....+..|.+.+.-.|++....+.++++++|..++++ +..+++.+.+....+
T Consensus 56 ~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~~~-~~~~l~~~~~~~~~~ 126 (223)
T cd06915 56 EQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQFLVLNGDTYFDVD-LLALLAALRASGADA 126 (223)
T ss_pred HHHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhhcCCCCEEEEECCcccCCC-HHHHHHHHHhCCCcE
Confidence 4455666532 2234455556667888888888887777889999999987655 677777776544433
No 200
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=89.81 E-value=4.8 Score=36.42 Aligned_cols=98 Identities=9% Similarity=0.120 Sum_probs=60.6
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH---HcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGA 350 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~g~~~a~n~g~ 350 (439)
.+|.-+ . ..|..+|+++.+.... +|+||-+..... .+.++.. .++..+.+...+...|.+.++..+.
T Consensus 25 llpv~~-~-pli~~~l~~l~~~gi~----~i~vv~~~~~~~----~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~ 94 (240)
T cd02538 25 LLPVYD-K-PMIYYPLSTLMLAGIR----EILIISTPEDLP----LFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGE 94 (240)
T ss_pred eeEECC-E-EhHHHHHHHHHHCCCC----EEEEEeCcchHH----HHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHH
Confidence 345554 4 6888889888864322 677765432212 2223322 1222355554555678888998888
Q ss_pred hhcCCCEEEEEcCCCccCCCChHHHHHhhhc
Q psy8674 351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 381 (439)
Q Consensus 351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~ 381 (439)
.....+-++++.+|..+.+..+..+++....
T Consensus 95 ~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~ 125 (240)
T cd02538 95 EFIGDDPVCLILGDNIFYGQGLSPILQRAAA 125 (240)
T ss_pred HhcCCCCEEEEECCEEEccHHHHHHHHHHHh
Confidence 8776666777788887766667888876653
No 201
>KOG1413|consensus
Probab=89.70 E-value=1.8 Score=40.71 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=79.5
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC--------
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-------- 337 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-------- 337 (439)
..+|.+.||+-+-|+. +.+++|++.|+.+.+....+-|||.-||+...+.+ .+..+.+. +..+.++
T Consensus 64 ~~~~v~pvvVf~csR~-~~lr~~v~kll~yrPsaekfpiiVSQD~~~e~vk~-~~~~~g~~----v~~i~~~~h~~~ei~ 137 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRA-DALRRHVKKLLEYRPSAEKFPIIVSQDCEKEAVKK-KLLSYGSD----VSHIQHPMHLKDEIS 137 (411)
T ss_pred CCCCceeEEEEecCcH-HHHHHHHHHHHHhCcchhhcCEEEeccCCcHHHHH-HHHHhccc----hhhhcCccccccccc
Confidence 4456788888888998 99999999999887655555788888888766544 55555332 2222222
Q ss_pred -----CCCC--------HHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHH---hhhcCCCEEEE
Q psy8674 338 -----EREG--------LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA---PIYSDRKIMTV 388 (439)
Q Consensus 338 -----~~~g--------~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~---~~~~~~~~~v~ 388 (439)
+... +..|+|..+...+.+.++.+.+|..+.|++.+-+.. .+..++...++
T Consensus 138 v~~~~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcv 204 (411)
T KOG1413|consen 138 VPPRHKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCV 204 (411)
T ss_pred cCCcccccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEe
Confidence 1111 345666666667789999999999999999877654 33344444444
No 202
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=89.65 E-value=15 Score=35.65 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=56.8
Q ss_pred hhHHHHHHHHhc---CCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674 2 LDKKLEDYIERF---NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 70 (439)
Q Consensus 2 ~~~~l~~~~~~~---~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~ 70 (439)
..+++++|.... +.+|+++...+..|-++|.=.+...-.++-++.++.|...+-+ +..+++.+.+...
T Consensus 57 ~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~~~ 127 (358)
T COG1208 57 LGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLD-LSELLEFHKKKGA 127 (358)
T ss_pred chHHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccC-HHHHHHHHHhccC
Confidence 356788888762 3689999988889998888888888888889999999999988 9999999987643
No 203
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=89.52 E-value=1 Score=48.84 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=46.2
Q ss_pred CcEEEEEecCCCC-----hhHHHHhhhhhc----cCcEEEEecCCcccC-CCchHHHHHHHhc
Q psy8674 15 GKVRLIRNTEREG-----LIRTRSRGAKES----RGEVIVFLDAHCEVG-LNWLPPLLAPIYS 67 (439)
Q Consensus 15 ~~i~~i~~~~n~G-----~a~arN~G~~~A----~g~~i~flD~D~~~~-~~~l~~l~~~~~~ 67 (439)
|.+.+|..+++.| .|+|.|..++.+ .|+||+-||+|..+. |..|.+.+-.|..
T Consensus 516 P~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lD 578 (1079)
T PLN02638 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMD 578 (1079)
T ss_pred cceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcC
Confidence 4889999999888 599999999655 799999999999985 9999999988874
No 204
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=89.42 E-value=1.1 Score=39.93 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=51.5
Q ss_pred ceEEEEEecCCChhHHHHHHHHHH---hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHH
Q psy8674 270 KASVILVFHNEGFSSLMRTVHSII---KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR 346 (439)
Q Consensus 270 ~vsiiip~~n~~~~~l~~~l~sl~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~ 346 (439)
+++||||.+++. +.|...|..+. +... ..+.|+||..-. ...++.+..+
T Consensus 3 ~~aiivpyr~R~-~~l~~~l~~~~~~L~rq~--~~~~i~vi~Q~~-------------------------~~~FNR~~ll 54 (219)
T cd00899 3 KVAIIVPFRNRF-EHLLIFLPHLHPFLQRQQ--LDYRIFVIEQVG-------------------------NFRFNRAKLL 54 (219)
T ss_pred ceEEEEecCCHH-HHHHHHHHHHHHHHHhcC--CcEEEEEEEecC-------------------------Cccchhhhhh
Confidence 689999999999 88887776543 2221 233666664221 1123466777
Q ss_pred HHHHhhcC----CCEEEEEcCCCccCCCChH
Q psy8674 347 SRGAKESR----GEVIVFLDAHCEVGLNWLP 373 (439)
Q Consensus 347 n~g~~~a~----~d~i~~ld~D~~~~~~~l~ 373 (439)
|.|...|. .++++|-|.|..+..+++.
T Consensus 55 NvG~~~a~k~~~~dc~i~hDVDllP~~~~~~ 85 (219)
T cd00899 55 NVGFLEALKDGDWDCFIFHDVDLLPENDRNL 85 (219)
T ss_pred hHHHHHHhhcCCccEEEEecccccccCcccc
Confidence 88776553 6799999999998887755
No 205
>PLN02248 cellulose synthase-like protein
Probab=89.32 E-value=0.88 Score=49.40 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=44.3
Q ss_pred CcEEEEEecCCCC-----hhHHHHhhhh----hccCcEEEEecCCccc-CCCchHHHHHHHhc
Q psy8674 15 GKVRLIRNTEREG-----LIRTRSRGAK----ESRGEVIVFLDAHCEV-GLNWLPPLLAPIYS 67 (439)
Q Consensus 15 ~~i~~i~~~~n~G-----~a~arN~G~~----~A~g~~i~flD~D~~~-~~~~l~~l~~~~~~ 67 (439)
|.+.+|..+++.| .|+|.|.-++ ...|+||+.||+|..+ ++..|.+.+-.|..
T Consensus 585 P~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 585 PMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred ceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 3888888888877 5899999997 5579999999999998 56699888888874
No 206
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=89.09 E-value=3.3 Score=37.27 Aligned_cols=103 Identities=16% Similarity=0.253 Sum_probs=62.6
Q ss_pred CChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC---CcEEEEEcCCCCCHHHHHHHHHhhcC-C
Q psy8674 280 EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN---GKVRLIRNTEREGLIRTRSRGAKESR-G 355 (439)
Q Consensus 280 ~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~---~~v~~i~~~~~~g~~~a~n~g~~~a~-~ 355 (439)
.. ..|..+++.+......+ +|+||-+... .. .++.+...+. .++.++. ...+...+.-.|+.... .
T Consensus 29 gk-pll~~~i~~~~~~~~~~---~ivVv~~~~~---~~-~~~~~~~~~~~~~~~~~~v~--~g~~r~~sv~~gl~~~~~~ 98 (230)
T PRK13385 29 GE-PIFIHALRPFLADNRCS---KIIIVTQAQE---RK-HVQDLMKQLNVADQRVEVVK--GGTERQESVAAGLDRIGNE 98 (230)
T ss_pred Ce-EHHHHHHHHHHcCCCCC---EEEEEeChhh---HH-HHHHHHHhcCcCCCceEEcC--CCchHHHHHHHHHHhccCC
Confidence 44 68888998887643222 6666654322 12 2333333332 1345553 22344577777777653 5
Q ss_pred CEEEEEcCCCcc-CCCChHHHHHhhhcCCC-EEEEeeee
Q psy8674 356 EVIVFLDAHCEV-GLNWLPPLLAPIYSDRK-IMTVPVID 392 (439)
Q Consensus 356 d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~-~~v~~~~~ 392 (439)
++++++|+|.-+ +++.+.++++.+...+. ..+.|..+
T Consensus 99 d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~d 137 (230)
T PRK13385 99 DVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKD 137 (230)
T ss_pred CeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccc
Confidence 789999999885 79999999999876544 44445443
No 207
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=88.96 E-value=6.4 Score=36.57 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=56.1
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|..+.. ..|..+++.+....... +|+||-+.... . .++++.......+.++..+...|.+.|.-.++...
T Consensus 26 ll~l~g~~-~li~~~l~~l~~~~~~~---~i~vvt~~~~~---~-~v~~~l~~~~~~~~ii~ep~~~gTa~ai~~a~~~~ 97 (274)
T cd02509 26 FLKLFGDK-SLLQQTLDRLKGLVPPD---RILVVTNEEYR---F-LVREQLPEGLPEENIILEPEGRNTAPAIALAALYL 97 (274)
T ss_pred EeEcCCCC-cHHHHHHHHHhcCCCCC---cEEEEechHHH---H-HHHHHHhhcCCCceEEECCCCCCcHHHHHHHHHHH
Confidence 45666656 78999999887653222 67777553211 1 34433333122567776677778888887777654
Q ss_pred C----CCEEEEEcCCCccC
Q psy8674 354 R----GEVIVFLDAHCEVG 368 (439)
Q Consensus 354 ~----~d~i~~ld~D~~~~ 368 (439)
. .++++++.+|..+.
T Consensus 98 ~~~~~~~~vlVl~~D~~i~ 116 (274)
T cd02509 98 AKRDPDAVLLVLPSDHLIE 116 (274)
T ss_pred HhcCCCCeEEEecchhccc
Confidence 3 57899999998875
No 208
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=88.78 E-value=4 Score=36.78 Aligned_cols=100 Identities=16% Similarity=0.262 Sum_probs=60.9
Q ss_pred CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEE
Q psy8674 279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVI 358 (439)
Q Consensus 279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i 358 (439)
+.. ..+..+++.+......+ +|+||-+..... + .+..+.... .+.++..+...+.+ ....+++....+++
T Consensus 22 ~Gk-pli~~~i~~l~~~~~~~---~ivVv~~~~~~~--~-~i~~~~~~~--~v~~v~~~~~~~l~-~~~~~~~~~~~d~v 91 (233)
T cd02518 22 GGK-PLLEHLLDRLKRSKLID---EIVIATSTNEED--D-PLEALAKKL--GVKVFRGSEEDVLG-RYYQAAEEYNADVV 91 (233)
T ss_pred CCc-cHHHHHHHHHHhCCCCC---eEEEECCCCccc--H-HHHHHHHHc--CCeEEECCchhHHH-HHHHHHHHcCCCEE
Confidence 345 68888888887643222 677775544311 1 233333332 46677665543222 22334444567999
Q ss_pred EEEcCCCcc-CCCChHHHHHhhhcCCCEEEE
Q psy8674 359 VFLDAHCEV-GLNWLPPLLAPIYSDRKIMTV 388 (439)
Q Consensus 359 ~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~ 388 (439)
+++++|.-+ +++.++++++.+...+...++
T Consensus 92 li~~~D~P~i~~~~i~~li~~~~~~~~~~~~ 122 (233)
T cd02518 92 VRITGDCPLIDPEIIDAVIRLFLKSGADYTS 122 (233)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 999999985 799999999988765544443
No 209
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=88.59 E-value=6.2 Score=35.35 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc-CCCEEEEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-RGEVIVFL 361 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a-~~d~i~~l 361 (439)
..+..+++.+......+ +|+||-+... .+.+.+.+.... ..+.++... .+.+.+.-.|+... ..++++++
T Consensus 32 pli~~~l~~l~~~~~~~---~ivvv~~~~~---~~~~~~~~~~~~-~~~~~~~~~--~~~~~sv~~~l~~~~~~d~vlv~ 102 (227)
T PRK00155 32 PILEHTLEAFLAHPRID---EIIVVVPPDD---RPDFAELLLAKD-PKVTVVAGG--AERQDSVLNGLQALPDDDWVLVH 102 (227)
T ss_pred EHHHHHHHHHHcCCCCC---EEEEEeChHH---HHHHHHHhhccC-CceEEeCCc--chHHHHHHHHHHhCCCCCEEEEc
Confidence 68888888887543222 6777754322 121222222111 134444322 24677777888775 57899999
Q ss_pred cCCCc-cCCCChHHHHHhhhcCCC-EEEEee
Q psy8674 362 DAHCE-VGLNWLPPLLAPIYSDRK-IMTVPV 390 (439)
Q Consensus 362 d~D~~-~~~~~l~~l~~~~~~~~~-~~v~~~ 390 (439)
++|.- ++++.+..+++.+..++. ..++|.
T Consensus 103 ~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 133 (227)
T PRK00155 103 DAARPFLTPDDIDRLIEAAEETGAAILAVPV 133 (227)
T ss_pred cCccCCCCHHHHHHHHHHHhhCCCEEEEEec
Confidence 99988 589999999998876544 445554
No 210
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.55 E-value=1.7 Score=37.37 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=45.2
Q ss_pred EEEEEec-CCCChhHHHHhhhhhcc--CcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeee
Q psy8674 17 VRLIRNT-EREGLIRTRSRGAKESR--GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVP 75 (439)
Q Consensus 17 i~~i~~~-~n~G~a~arN~G~~~A~--g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 75 (439)
+.++.++ ...|.+.+...|++.+. .++++++.+|+- +++..++.+++.+..++..++.+
T Consensus 64 ~~~~~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~ 126 (186)
T cd04182 64 VVVVINPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGIVAP 126 (186)
T ss_pred eEEEeCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 5555544 33588899999999886 799999999994 68999999999887555545443
No 211
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=88.54 E-value=5.6 Score=39.86 Aligned_cols=100 Identities=9% Similarity=0.055 Sum_probs=62.0
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|.-+ . ..|..+|+.+...... +|+|+-... .+ .+.++.......+.++......|.+.+...++...
T Consensus 27 ll~v~g-k-pli~~~l~~l~~~gi~----~ivvv~~~~-~~----~i~~~~~~~~~~~~~~~~~~~~G~~~sl~~a~~~l 95 (446)
T PRK14353 27 LHPVAG-R-PMLAHVLAAAASLGPS----RVAVVVGPG-AE----AVAAAAAKIAPDAEIFVQKERLGTAHAVLAAREAL 95 (446)
T ss_pred cCEECC-c-hHHHHHHHHHHhCCCC----cEEEEECCC-HH----HHHHHhhccCCCceEEEcCCCCCcHHHHHHHHHHH
Confidence 345445 4 6888899888765422 566554432 22 23333333222344444555677777777777765
Q ss_pred C--CCEEEEEcCCC-ccCCCChHHHHHhhhcCCC
Q psy8674 354 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 354 ~--~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~ 384 (439)
. .+.++++++|. .+++..+..+++.++....
T Consensus 96 ~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~ 129 (446)
T PRK14353 96 AGGYGDVLVLYGDTPLITAETLARLRERLADGAD 129 (446)
T ss_pred hccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCc
Confidence 2 57788899998 5788899999986655433
No 212
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=88.47 E-value=1.4 Score=41.36 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=52.4
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHH------------HHHHHHHHHcCCcEEEEE
Q psy8674 268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD------------QKLEDYIQRFNGKVRLIR 335 (439)
Q Consensus 268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~------------~~~~~~~~~~~~~v~~i~ 335 (439)
...+.||||+-.+. +.|+.-... ...+ .+|||-|+....+.. +-+...... ....|
T Consensus 10 ~~evdIVi~TI~~~-~fL~~~r~~-----l~~~--h~iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~---~~~~I- 77 (346)
T PLN03180 10 KDELDIVIPTIRNL-DFLEMWRPF-----FQPY--HLIIVQDGDPSKEIKVPEGFDYELYNRNDINRILGP---KASCI- 77 (346)
T ss_pred CCcceEEEeccCch-hHHHHHHHh-----cCcc--cEEEEecCCcccceeccCCCceeecCHHHHHhhhcc---ccccc-
Confidence 34699999997666 555544433 2334 566666644322211 001111111 11111
Q ss_pred cCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCC
Q psy8674 336 NTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNW 371 (439)
Q Consensus 336 ~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~ 371 (439)
...-.+.+|.|.-.++.+|++++|+|+.+..+|
T Consensus 78 ---p~~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d~ 110 (346)
T PLN03180 78 ---SFKDSACRCFGYLVSKKKYIFTIDDDCFVAKDP 110 (346)
T ss_pred ---ccCcccchhhhheeecceEEEEECCCCCCCCCC
Confidence 233457899999899999999999999987663
No 213
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=88.38 E-value=9 Score=34.88 Aligned_cols=113 Identities=13% Similarity=0.141 Sum_probs=66.4
Q ss_pred EEEEecC-CChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCC-----------
Q psy8674 273 VILVFHN-EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE----------- 340 (439)
Q Consensus 273 iiip~~n-~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~----------- 340 (439)
|++.+-+ .-...+.-++.||+..+.... .+.|+.++-++...+ .++.+.......++++......
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~--~~~il~~~is~~~~~-~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTKPL--RFHVLTNPLSDTFKA-ALDNLRKLYNFNYELIPVDILDSVDSEHLKRPI 79 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCCCe--EEEEEEccccHHHHH-HHHHHHhccCceEEEEeccccCcchhhhhcCcc
Confidence 4444444 223778889999998765444 899998886665544 6766655433345555442111
Q ss_pred C-HHHHHHHHHhhcC-CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674 341 G-LIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 389 (439)
Q Consensus 341 g-~~~a~n~g~~~a~-~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~ 389 (439)
. .+..+-...+... -+-+++||+|..+. +-|..|.+.-.++...++++
T Consensus 80 ~~~~y~RL~i~~llp~~~kvlYLD~D~iv~-~di~~L~~~~l~~~~~aav~ 129 (246)
T cd00505 80 KIVTLTKLHLPNLVPDYDKILYVDADILVL-TDIDELWDTPLGGQELAAAP 129 (246)
T ss_pred ccceeHHHHHHHHhhccCeEEEEcCCeeec-cCHHHHhhccCCCCeEEEcc
Confidence 0 0112222222233 78899999999887 44777776544444444444
No 214
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=88.30 E-value=8.4 Score=33.59 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHHHHHHHHhhcCCC--EEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKESRGE--VIV 359 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~a~n~g~~~a~~d--~i~ 359 (439)
..+..+++..+..... +||||-..- ..+ ........ ..++++.++. ..|.+..+-.|++++.++ .++
T Consensus 32 plv~~~~~~a~~a~~~----~vivV~g~~---~~~-~~~a~~~~--~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~ 101 (199)
T COG2068 32 PLVRASAETALSAGLD----RVIVVTGHR---VAE-AVEALLAQ--LGVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVV 101 (199)
T ss_pred cHHHHHHHHHHhcCCC----eEEEEeCcc---hhh-HHHhhhcc--CCeEEEeCcchhhhHhHHHHHHHHhcccCCCeEE
Confidence 5677777777654332 788886544 122 33333332 2578887764 589999999999998865 999
Q ss_pred EEcCCCc-cCCCChHHHHHhhhcCCCEEEEeeeeeecCC
Q psy8674 360 FLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQ 397 (439)
Q Consensus 360 ~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~ 397 (439)
++-+|.- +.++.+..++..+.... .++.|........
T Consensus 102 ~~lgDmP~V~~~t~~rl~~~~~~~~-~~v~p~~~g~rG~ 139 (199)
T COG2068 102 LMLGDMPQVTPATVRRLIAAFRARG-AAVRPVYGGARGH 139 (199)
T ss_pred EEeCCCCCCCHHHHHHHHHhccccC-ceeeeeccCCcCC
Confidence 9999988 68999999999998774 5677765554443
No 215
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=88.28 E-value=6.4 Score=38.45 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEc
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 362 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld 362 (439)
..|..+++.+.....-+ +|+||-+.... + ..+.+..... .+.++. ...+...+...|++....+++++.|
T Consensus 34 Pll~~tl~~l~~~~~i~---~IvVVv~~~~~---~-~~~~~~~~~~-~v~~v~--gG~~r~~SV~~gL~~l~~d~VLVhd 103 (378)
T PRK09382 34 PLWLHVLENLSSAPAFK---EIVVVIHPDDI---A-YMKKALPEIK-FVTLVT--GGATRQESVRNALEALDSEYVLIHD 103 (378)
T ss_pred eHHHHHHHHHhcCCCCC---eEEEEeChHHH---H-HHHHhcccCC-eEEEeC--CCchHHHHHHHHHHhcCCCeEEEee
Confidence 68888998887653212 67777543221 1 3333322221 244442 2234566777788887779999999
Q ss_pred CCCc-cCCCChHHHHHhhhcCC
Q psy8674 363 AHCE-VGLNWLPPLLAPIYSDR 383 (439)
Q Consensus 363 ~D~~-~~~~~l~~l~~~~~~~~ 383 (439)
+|.- ++++.++.+++.+....
T Consensus 104 adrPfv~~e~I~~li~~~~~~~ 125 (378)
T PRK09382 104 AARPFVPKELIDRLIEALDKAD 125 (378)
T ss_pred ccccCCCHHHHHHHHHHhhcCC
Confidence 9976 47899999999887543
No 216
>PLN02917 CMP-KDO synthetase
Probab=87.53 E-value=13 Score=34.93 Aligned_cols=163 Identities=11% Similarity=0.120 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCCcEEEEEe--cCCCChhHHHHhhhhhcc--CcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeeeeee
Q psy8674 4 KKLEDYIERFNGKVRLIRN--TEREGLIRTRSRGAKESR--GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVID 78 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~--~~n~G~a~arN~G~~~A~--g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~ 78 (439)
+.+.+++++++ ++++.+ ....|.+.+. .|++... .++++++++|.- +++..|+.+++.+.++...++...+.
T Consensus 98 e~I~~~~~~~~--v~vi~~~~~~~~GT~~~~-~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~ 174 (293)
T PLN02917 98 ERIAECCRGFG--ADVIMTSESCRNGTERCN-EALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT 174 (293)
T ss_pred HHHHHHHHHcC--CEEEeCCcccCCchHHHH-HHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEee
Confidence 44566666553 556543 3445766663 6665553 689999999998 59999999999887554333322222
Q ss_pred cccC-CCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674 79 GIDY-QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW 157 (439)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~ 157 (439)
.+.. +...+.. -.-.+..-+..+.|....++.. ++. . ...........+.++++++.+..+...+++-. -
T Consensus 175 ~~~~~~~~~ygr----v~vv~~~~g~alyfsr~~Ipe~--kd~-~-~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~-e 245 (293)
T PLN02917 175 SLKPEDASDPNR----VKCVVDNQGYAIYFSRGLIPYN--KSG-K-VNPQFPYLLHLGIQSYDAKFLKIYPELPPTPL-Q 245 (293)
T ss_pred ecCHHHhcCCCc----eEEEECCCCeEEEeecCcCCcC--CCc-c-cccccceEEEEEEEEeCHHHHHHHHcCCCCcc-c
Confidence 1111 1111100 0000000000011111111110 000 0 00111234466789999999888776655421 1
Q ss_pred cchhhHHHHHHHHhCCcEEEec
Q psy8674 158 GGENFELSFKIWMCGGSIEWVP 179 (439)
Q Consensus 158 ~~ED~Dl~~Rl~~~G~~i~~~p 179 (439)
.|.+---+|+.+.|++|...+
T Consensus 246 -~e~yLtdl~~le~G~~i~~~~ 266 (293)
T PLN02917 246 -LEEDLEQLKVLENGYKMKVIK 266 (293)
T ss_pred -chhccHHHHHHhCCCceEEEE
Confidence 133333357889999986655
No 217
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=87.53 E-value=8.4 Score=34.19 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=63.0
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc------CCcEEEEEcCCCCCHHHHHH
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF------NGKVRLIRNTEREGLIRTRS 347 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~------~~~v~~i~~~~~~g~~~a~n 347 (439)
.+|.-|. ..|..+|+.+.+... .+|+||-+..... .++.+.+.. ...+.++......|.+.++.
T Consensus 25 Llpv~g~--pli~~~l~~l~~~g~----~~iivv~~~~~~~----~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~ 94 (214)
T cd04198 25 LLPVANK--PMIWYPLDWLEKAGF----EDVIVVVPEEEQA----EISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLR 94 (214)
T ss_pred cCEECCe--eHHHHHHHHHHHCCC----CeEEEEECHHHHH----HHHHHHHhcccccCcceeEEEecCCCCcChHHHHH
Confidence 4555565 588888998887432 2777776432111 334444332 11233343456678899998
Q ss_pred HHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674 348 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 388 (439)
Q Consensus 348 ~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 388 (439)
.+......+ ++++.+|. +.+.-+..+++.....+..+++
T Consensus 95 ~~~~~i~~d-~lv~~~D~-i~~~~l~~~l~~h~~~~~~~t~ 133 (214)
T cd04198 95 HIRKKIKKD-FLVLSCDL-ITDLPLIELVDLHRSHDASLTV 133 (214)
T ss_pred HHHhhcCCC-EEEEeCcc-ccccCHHHHHHHHhccCCcEEE
Confidence 888876555 67778885 4556678888877665554443
No 218
>PLN02190 cellulose synthase-like protein
Probab=87.39 E-value=2.4 Score=44.41 Aligned_cols=54 Identities=7% Similarity=0.026 Sum_probs=45.5
Q ss_pred CcEEEEEecCCCC-----hhHHHHhhhhhc----cCcEEEEecCCccc-CCCchHHHHHHHhcC
Q psy8674 15 GKVRLIRNTEREG-----LIRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIYSD 68 (439)
Q Consensus 15 ~~i~~i~~~~n~G-----~a~arN~G~~~A----~g~~i~flD~D~~~-~~~~l~~l~~~~~~~ 68 (439)
|.+.+|..+++.| .|+|.|.-++.+ .++||+-||+|..+ .|..+.+.+-.+...
T Consensus 252 P~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~ 315 (756)
T PLN02190 252 PHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQK 315 (756)
T ss_pred ceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCC
Confidence 4889999888887 489999998764 69999999999988 788888888877643
No 219
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=87.15 E-value=10 Score=34.32 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCcEEEEE--ecCCCChhHHHHhhhhh--ccCcEEEEecCCc-ccCCCchHHHHHHHhcCCCeEe
Q psy8674 4 KKLEDYIERFNGKVRLIR--NTEREGLIRTRSRGAKE--SRGEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMT 73 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~--~~~n~G~a~arN~G~~~--A~g~~i~flD~D~-~~~~~~l~~l~~~~~~~~~~~v 73 (439)
+.+.+++.+++ ++++. .+...|.+.+....... ...+.++++++|+ .++++.++.+++.+...+..++
T Consensus 52 ~~i~~~~~~~~--~~v~~~~~~~~~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~ 124 (245)
T PRK05450 52 ERIADAVEAFG--GEVVMTSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMA 124 (245)
T ss_pred HHHHHHHHHcC--CEEEECCCcCCCchHHHHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeE
Confidence 34555666554 44443 23334544443322222 2468899999999 6799999999998875544433
No 220
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=86.81 E-value=9.3 Score=34.46 Aligned_cols=93 Identities=12% Similarity=0.206 Sum_probs=55.2
Q ss_pred EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC--CCCCHHHHHHHHHhh
Q psy8674 275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--EREGLIRTRSRGAKE 352 (439)
Q Consensus 275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~g~~~a~n~g~~~ 352 (439)
+|..+ . ..|...|+.+.+.... .+|+|+-+. + .+.++...++ +.++... ...|.+. .-.++..
T Consensus 21 ~~i~g-k-pll~~~l~~l~~~~~i---~~ivvv~~~---~----~i~~~~~~~~--~~~~~~~~~~~~gt~~-~~~~~~~ 85 (239)
T cd02517 21 ADIAG-K-PMIQHVYERAKKAKGL---DEVVVATDD---E----RIADAVESFG--GKVVMTSPDHPSGTDR-IAEVAEK 85 (239)
T ss_pred cccCC-c-CHHHHHHHHHHhCCCC---CEEEEECCc---H----HHHHHHHHcC--CEEEEcCcccCchhHH-HHHHHHh
Confidence 34444 4 6888888888765221 267766331 2 2333334433 4444332 2344443 3334444
Q ss_pred cCC--CEEEEEcCCC-ccCCCChHHHHHhhhcC
Q psy8674 353 SRG--EVIVFLDAHC-EVGLNWLPPLLAPIYSD 382 (439)
Q Consensus 353 a~~--d~i~~ld~D~-~~~~~~l~~l~~~~~~~ 382 (439)
... +.++++++|. .+++..+..+++.+..+
T Consensus 86 ~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~ 118 (239)
T cd02517 86 LDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD 118 (239)
T ss_pred cCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 444 8999999998 57899999999887654
No 221
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=86.46 E-value=9.6 Score=34.51 Aligned_cols=94 Identities=12% Similarity=0.215 Sum_probs=54.4
Q ss_pred EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEE--cCCCCCHHHHHHHHHhh
Q psy8674 275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIR--NTEREGLIRTRSRGAKE 352 (439)
Q Consensus 275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~--~~~~~g~~~a~n~g~~~ 352 (439)
+|.-+ . ..|..+|+.+.... . . +|+|+-+ . + .+.++...++ +.++. .+...|.+.... ++..
T Consensus 22 l~i~G-k-pll~~~l~~l~~~~-i-~--~ivvv~~-~-~-----~i~~~~~~~~--~~v~~~~~~~~~gt~~~~~-~~~~ 85 (245)
T PRK05450 22 ADIGG-K-PMIVRVYERASKAG-A-D--RVVVATD-D-E-----RIADAVEAFG--GEVVMTSPDHPSGTDRIAE-AAAK 85 (245)
T ss_pred cccCC-c-CHHHHHHHHHHhcC-C-C--eEEEECC-c-H-----HHHHHHHHcC--CEEEECCCcCCCchHHHHH-HHHh
Confidence 34444 4 68888888887642 1 2 6776643 1 2 2233333333 34433 233344443333 3322
Q ss_pred ---cCCCEEEEEcCCC-ccCCCChHHHHHhhhcCCC
Q psy8674 353 ---SRGEVIVFLDAHC-EVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 353 ---a~~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~ 384 (439)
...+.++++++|. .++++.+..+++.+...+.
T Consensus 86 ~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~ 121 (245)
T PRK05450 86 LGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEA 121 (245)
T ss_pred cCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCC
Confidence 2468899999999 5789999999998865533
No 222
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=86.26 E-value=11 Score=33.30 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=57.6
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA 350 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~v~~i~~~~~~g~~~a~n~g~ 350 (439)
.+|..+. ..|..+|+.+...... +|+||-+... + .+.++... .+..+.++......|.+.++..+.
T Consensus 23 ll~~~g~--pli~~~l~~l~~~~~~----~iivv~~~~~-~----~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~ 91 (220)
T cd06426 23 MLKVGGK--PILETIIDRFIAQGFR----NFYISVNYLA-E----MIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLP 91 (220)
T ss_pred cCeECCc--chHHHHHHHHHHCCCc----EEEEECccCH-H----HHHHHHCCccccCccEEEEECCCCCcchHHHHHHH
Confidence 3455555 5888899988875432 6666644321 1 23333221 222355554445567677665444
Q ss_pred hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
. ...+.++++.+|... ...+..+++.+.....
T Consensus 92 ~-~~~~~~lv~~~D~i~-~~~~~~l~~~~~~~~~ 123 (220)
T cd06426 92 E-KPTDPFLVMNGDILT-NLNYEHLLDFHKENNA 123 (220)
T ss_pred h-hCCCCEEEEcCCEee-ccCHHHHHHHHHhcCC
Confidence 3 336778888999744 5568888888766544
No 223
>PLN03153 hypothetical protein; Provisional
Probab=86.21 E-value=2.9 Score=41.78 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=30.9
Q ss_pred cccceEEEEeHHHHHHhCCC-CCCCC----CccchhhHHHHHHHHhCCcEEEec
Q psy8674 131 THAGGLFAMDRAFFLELGGY-DPGLL----VWGGENFELSFKIWMCGGSIEWVP 179 (439)
Q Consensus 131 ~~~g~~~~irr~~f~~iGgf-de~~~----~~~~ED~Dl~~Rl~~~G~~i~~~p 179 (439)
...|+.+++++.+.+++-.+ |+-.. .++ +|.-|..-+.+.|.++...|
T Consensus 261 A~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~-gD~rL~~CL~elGV~LT~~~ 313 (537)
T PLN03153 261 AFGGGGIAISYPLAEALSRILDDCLDRYPKLYG-SDDRLHACITELGVPLSREP 313 (537)
T ss_pred ccCCceEEEcHHHHHHHHHHhhhhhhhcccCCC-cHHHHHHHHHHcCCCceecC
Confidence 34577899999666654432 22111 134 78889999988887765554
No 224
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=86.13 E-value=4.6 Score=35.49 Aligned_cols=88 Identities=11% Similarity=0.205 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHHHHHHHHhhcCCCE
Q psy8674 279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKESRGEV 357 (439)
Q Consensus 279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~a~n~g~~~a~~d~ 357 (439)
+.. ..|..+++.+... . . +|+||-+.. + ....+. ..++.++.... ..|...+.-.|+.....++
T Consensus 31 ~g~-~ll~~~i~~l~~~-~--~--~ivvv~~~~-----~-~~~~~~---~~~~~~i~~~~~~~G~~~si~~~l~~~~~~~ 95 (200)
T PRK02726 31 QGV-PLLQRVARIAAAC-A--D--EVYIITPWP-----E-RYQSLL---PPGCHWLREPPPSQGPLVAFAQGLPQIKTEW 95 (200)
T ss_pred CCE-eHHHHHHHHHHhh-C--C--EEEEECCCH-----H-HHHhhc---cCCCeEecCCCCCCChHHHHHHHHHhCCCCc
Confidence 345 6888888888642 1 1 677764321 1 222221 12466665443 3688899999999988899
Q ss_pred EEEEcCCCcc-CCCChHHHHHhhhc
Q psy8674 358 IVFLDAHCEV-GLNWLPPLLAPIYS 381 (439)
Q Consensus 358 i~~ld~D~~~-~~~~l~~l~~~~~~ 381 (439)
++++++|.-+ +++.++.|++.+..
T Consensus 96 vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 96 VLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 9999999985 79999999998765
No 225
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=85.98 E-value=13 Score=36.16 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=73.9
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA 350 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~v~~i~~~~~~g~~~a~n~g~ 350 (439)
.+|.-|.+ .|.-.|++|..+... ||+|+ -+...+ .++++... ++.++.++......|.+.++-.+.
T Consensus 26 llpI~gkP--ii~~~l~~L~~~Gv~----eivi~-~~y~~~----~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~ 94 (358)
T COG1208 26 LLPIAGKP--LIEYVLEALAAAGVE----EIVLV-VGYLGE----QIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNAL 94 (358)
T ss_pred cceeCCcc--HHHHHHHHHHHCCCc----EEEEE-eccchH----HHHHHHhcccccCCceEEEecCCcCccHHHHHHHH
Confidence 56777774 889999999886543 67776 333322 34444433 245788888888899999999999
Q ss_pred hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCC
Q psy8674 351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 383 (439)
Q Consensus 351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~ 383 (439)
....++-++++.+|...+-+ +..+++......
T Consensus 95 ~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~~ 126 (358)
T COG1208 95 DLLGGDDFLVLNGDVLTDLD-LSELLEFHKKKG 126 (358)
T ss_pred HhcCCCcEEEEECCeeeccC-HHHHHHHHHhcc
Confidence 99888899999999999988 999999887764
No 226
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=85.90 E-value=0.58 Score=43.67 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=38.3
Q ss_pred hHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeee
Q psy8674 29 IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 75 (439)
Q Consensus 29 a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 75 (439)
.+.||.|.-.|+-+|++++|.||.+..++.-..++.+.++.....++
T Consensus 80 ~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~ 126 (348)
T PF03214_consen 80 DACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTP 126 (348)
T ss_pred cchhhhHhhhcccceEEEEccccccccCCccceehhhhccceeeecc
Confidence 57899999999999999999999998888777777777664444433
No 227
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=85.58 E-value=2.5 Score=36.53 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=44.1
Q ss_pred cEEEEEecC-CCChhHHHHhhhh-hccCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEee
Q psy8674 16 KVRLIRNTE-REGLIRTRSRGAK-ESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTV 74 (439)
Q Consensus 16 ~i~~i~~~~-n~G~a~arN~G~~-~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~ 74 (439)
.++++..+. ..|.+.+.-.|++ ....++++++++|.- ++++.++.+++.+..++..+++
T Consensus 63 ~v~~v~~~~~~~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 124 (188)
T TIGR03310 63 NITLVHNPQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVV 124 (188)
T ss_pred CeEEEECcChhcCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEE
Confidence 477776543 2577778888887 456799999999995 6899999999987765554443
No 228
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=85.29 E-value=9 Score=34.02 Aligned_cols=98 Identities=9% Similarity=0.219 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC----CCCCHHHHHHHHHhhcC----
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT----EREGLIRTRSRGAKESR---- 354 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~----~~~g~~~a~n~g~~~a~---- 354 (439)
..|..+|+.+.+....+ +|+|+-| ++.. .+....++..+.+++.+ ...|...+...|++...
T Consensus 27 pll~~~l~~l~~~~~~~---~IvV~~~---~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~ 96 (223)
T cd02513 27 PLIAWTIEAALESKLFD---RVVVSTD---DEEI----AEVARKYGAEVPFLRPAELATDTASSIDVILHALDQLEELGR 96 (223)
T ss_pred cHHHHHHHHHHhCCCCC---EEEEECC---cHHH----HHHHHHhCCCceeeCChHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 68888888887643222 5665432 2222 22233332112333221 12355666666776543
Q ss_pred -CCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEee
Q psy8674 355 -GEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPV 390 (439)
Q Consensus 355 -~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~ 390 (439)
.++++++++|.-+ .+..+..+++.+.......+.+.
T Consensus 97 ~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~ 134 (223)
T cd02513 97 DFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSV 134 (223)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 3899999999985 79999999998876544444444
No 229
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=85.20 E-value=13 Score=37.61 Aligned_cols=101 Identities=12% Similarity=0.146 Sum_probs=63.8
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|..+. ..|..+|+++.+.... +++||-.... . .+.++.......+.++..+...|.+.+.-.|+...
T Consensus 26 llpi~gk--pli~~~l~~l~~~g~~----~iivvv~~~~-~----~i~~~~~~~~~~~~~~~~~~~~Gt~~si~~al~~l 94 (482)
T PRK14352 26 LHTLAGR--SMLGHVLHAAAGLAPQ----HLVVVVGHDR-E----RVAPAVAELAPEVDIAVQDEQPGTGHAVQCALEAL 94 (482)
T ss_pred eceeCCc--cHHHHHHHHHHhcCCC----cEEEEECCCH-H----HHHHHhhccCCccEEEeCCCCCCcHHHHHHHHHHh
Confidence 4455554 5888999988865432 5555544322 2 22222222222355555556678788888888775
Q ss_pred C---CCEEEEEcCCC-ccCCCChHHHHHhhhcCCCE
Q psy8674 354 R---GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKI 385 (439)
Q Consensus 354 ~---~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~~ 385 (439)
. .+.++++++|. .+++..+.+|++........
T Consensus 95 ~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~ 130 (482)
T PRK14352 95 PADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNA 130 (482)
T ss_pred ccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 4 37899999998 46788899999887665543
No 230
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=85.17 E-value=13 Score=33.66 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=52.5
Q ss_pred hHHHHHHHHhcC---CcEEEEEecCCCChhHHHHhhhhhccCcE----EEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674 3 DKKLEDYIERFN---GKVRLIRNTEREGLIRTRSRGAKESRGEV----IVFLDAHCEVGLNWLPPLLAPIYSDRK 70 (439)
Q Consensus 3 ~~~l~~~~~~~~---~~i~~i~~~~n~G~a~arN~G~~~A~g~~----i~flD~D~~~~~~~l~~l~~~~~~~~~ 70 (439)
.+.+.++++... .+|+++..++..|.+.|.-.+....+.+- ++++++|...+. -+..+++.+.+...
T Consensus 58 ~~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~ 131 (248)
T PF00483_consen 58 EEQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNA 131 (248)
T ss_dssp HHHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSS
T ss_pred cccccccccccccccccceeeecccccchhHHHHHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhcccc
Confidence 456778887653 24888888888999999999998888765 999999999888 56777777765544
No 231
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=85.10 E-value=6.5 Score=33.84 Aligned_cols=92 Identities=7% Similarity=0.133 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc--CCCCCHHHHHHHHHhhcCCCEEEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN--TEREGLIRTRSRGAKESRGEVIVF 360 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~g~~~a~n~g~~~a~~d~i~~ 360 (439)
..|..+++.+... ..+|+|+-+... . . ... ... .+.++.. +...|...+.-.|+.....+++++
T Consensus 28 pll~~~l~~l~~~-----~~~ivv~~~~~~-~--~-~~~---~~~--~~~~i~~~~~~~~g~~~si~~al~~~~~~~vlv 93 (186)
T TIGR02665 28 PLIEHVLARLRPQ-----VSDLAISANRNP-E--R-YAQ---AGF--GLPVVPDALADFPGPLAGILAGLRWAGTDWVLT 93 (186)
T ss_pred EHHHHHHHHHHhh-----CCEEEEEcCCCH-H--H-Hhh---ccC--CCcEEecCCCCCCCCHHHHHHHHHhcCCCeEEE
Confidence 6888888887632 126777654321 1 1 111 111 3455544 334788888888998888899999
Q ss_pred EcCCCc-cCCCChHHHHHhhhcCCCEEEE
Q psy8674 361 LDAHCE-VGLNWLPPLLAPIYSDRKIMTV 388 (439)
Q Consensus 361 ld~D~~-~~~~~l~~l~~~~~~~~~~~v~ 388 (439)
+++|.- ++++.++.+++.+...+..+++
T Consensus 94 ~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 122 (186)
T TIGR02665 94 VPCDTPFLPEDLVARLAAALEASDADIAV 122 (186)
T ss_pred EecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence 999985 6899999999988764443443
No 232
>KOG3916|consensus
Probab=85.08 E-value=6.2 Score=37.15 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=48.3
Q ss_pred CceEEEEEecCCChhHHHHHHHHHH---hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSII---KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 345 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a 345 (439)
-+|.||||..|++ ++|...|..|. ++.--++ .|+||+-..+ +.++.+.-
T Consensus 151 ~kvAIIIPfR~Re-~HL~~~l~~LhP~LqrQrL~y--~iyVieQ~g~-------------------------~~FNRakL 202 (372)
T KOG3916|consen 151 HKVAIIIPFRNRE-EHLRYLLHHLHPFLQRQRLDY--RIYVIEQAGN-------------------------KPFNRAKL 202 (372)
T ss_pred ceeEEEeecccHH-HHHHHHHHHhhHHHHhhhhce--eEEEEEecCC-------------------------CcccHHHh
Confidence 3799999999999 88888776543 2211223 6777654332 12345667
Q ss_pred HHHHHhhcC----CCEEEEEcCCCccCC
Q psy8674 346 RSRGAKESR----GEVIVFLDAHCEVGL 369 (439)
Q Consensus 346 ~n~g~~~a~----~d~i~~ld~D~~~~~ 369 (439)
+|.|+..|- -|.++|-|-|..+..
T Consensus 203 ~NVGf~eAlkd~~wdCfIFHDVDllPen 230 (372)
T KOG3916|consen 203 LNVGFLEALKDYGWDCFIFHDVDLLPEN 230 (372)
T ss_pred hhhHHHHHHHhcCCCEEEEecccccccC
Confidence 777776553 578999999977643
No 233
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=85.01 E-value=1.6 Score=43.32 Aligned_cols=150 Identities=13% Similarity=0.011 Sum_probs=81.9
Q ss_pred CcEEEEEecCCCChhHHHHhhh--hhc--cCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc-cCCCccccc
Q psy8674 15 GKVRLIRNTEREGLIRTRSRGA--KES--RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI-DYQTWEFRS 89 (439)
Q Consensus 15 ~~i~~i~~~~n~G~a~arN~G~--~~A--~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 89 (439)
.+|-+-+..+|.|. +|=|++= +.= .-++.+.||+|..++.+.+-.+++.++.+|.+......... ..+++....
T Consensus 212 ~~ifYRrRr~n~~R-KaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~TL~AR~ 290 (736)
T COG2943 212 GNIFYRRRRRNVKR-KAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGDTLYARC 290 (736)
T ss_pred CceeeehHhhhhcc-cccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcchHHHHH
Confidence 46766666666554 3334431 111 24889999999999999999999999999877554433332 233321111
Q ss_pred ccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCC--CCCccc----hhhH
Q psy8674 90 VYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPG--LLVWGG----ENFE 163 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~--~~~~~~----ED~D 163 (439)
.. -..-..|..-+ .+..+.. ..-..+.|+|-.||.+.|-+.-|..+- -...|+ -|.-
T Consensus 291 qQ-FatrvYGpl~~----------~GLawW~------~~Es~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfv 353 (736)
T COG2943 291 QQ-FATRVYGPLFT----------AGLAWWQ------LGESHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFV 353 (736)
T ss_pred HH-HHHHHhchHHh----------hhhHHHh------ccccccccccceeechhhHHhcCCCCCCCCCCCCccccchHHH
Confidence 00 00000010000 0111111 111245789999999999776655321 111122 3444
Q ss_pred HHHHHHHhCCcEEEecccc
Q psy8674 164 LSFKIWMCGGSIEWVPCSR 182 (439)
Q Consensus 164 l~~Rl~~~G~~i~~~p~~~ 182 (439)
=+-=++++|+-++..|+..
T Consensus 354 EAALmRRaGW~v~ia~dL~ 372 (736)
T COG2943 354 EAALMRRAGWGVWIAYDLD 372 (736)
T ss_pred HHHHHhhcCceEEEeccCC
Confidence 4455678899887776553
No 234
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=85.00 E-value=3.3 Score=37.03 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc--CcEEEEecCCc-ccCCCchHHHHHHHhcCCCeEe
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMT 73 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~--g~~i~flD~D~-~~~~~~l~~l~~~~~~~~~~~v 73 (439)
+.+.+++.++ +++++..+...|.+.+.-.|+.... .+.++++++|. .+++..+..+++.+.+.+..++
T Consensus 53 ~~i~~~~~~~--~~~~~~~~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~ 123 (229)
T cd02540 53 EQVKKALANP--NVEFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVT 123 (229)
T ss_pred HHHHHHhCCC--CcEEEECCCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEE
Confidence 4455555554 4777777777788888888877654 68999999999 4688899999988876544433
No 235
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=84.88 E-value=9.8 Score=33.69 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=65.4
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH-HcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ-RFNGKVRLIRNTEREGLIRTRSRGAKE 352 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~v~~i~~~~~~g~~~a~n~g~~~ 352 (439)
.++.. .. ..|..+++.+......+ +|+||-+..... ....+.. .....+.++... .+...+...|++.
T Consensus 22 l~~i~-Gk-pll~~~i~~l~~~~~~~---~ivVv~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~si~~al~~ 90 (218)
T cd02516 22 FLELG-GK-PVLEHTLEAFLAHPAID---EIVVVVPPDDID----LAKELAKYGLSKVVKIVEGG--ATRQDSVLNGLKA 90 (218)
T ss_pred eeEEC-Ce-EHHHHHHHHHhcCCCCC---EEEEEeChhHHH----HHHHHHhcccCCCeEEECCc--hHHHHHHHHHHHh
Confidence 34443 45 68889999887643222 677765433222 2222111 112234554332 3567778888887
Q ss_pred c---CCCEEEEEcCCCc-cCCCChHHHHHhhhcCCC-EEEEeee
Q psy8674 353 S---RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRK-IMTVPVI 391 (439)
Q Consensus 353 a---~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~-~~v~~~~ 391 (439)
. ..++++++++|.- ++++.+..+++.+...+. ..+.|..
T Consensus 91 ~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 134 (218)
T cd02516 91 LPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVT 134 (218)
T ss_pred cccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEecc
Confidence 6 4789999999988 589999999998876554 4444543
No 236
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=84.52 E-value=12 Score=37.62 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=65.3
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|..+. ..|...|+++.+.... +|++|-.... + .+.++..... .+.++..+...|.+.+...++...
T Consensus 25 l~pi~g~--pli~~~l~~l~~~gi~----~iiiv~~~~~-~----~i~~~~~~~~-~i~~~~~~~~~Gt~~al~~a~~~l 92 (459)
T PRK14355 25 MHPLAGR--PMVSWPVAAAREAGAG----RIVLVVGHQA-E----KVREHFAGDG-DVSFALQEEQLGTGHAVACAAPAL 92 (459)
T ss_pred eceeCCc--cHHHHHHHHHHhcCCC----eEEEEECCCH-H----HHHHHhccCC-ceEEEecCCCCCHHHHHHHHHHHh
Confidence 5555554 5888888888765322 5666544332 1 2222222221 466766666778888888888776
Q ss_pred C--CCEEEEEcCCC-ccCCCChHHHHHhhhcCCC
Q psy8674 354 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 354 ~--~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~ 384 (439)
. .+.++++++|. .+++..+.++++.+.....
T Consensus 93 ~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~ 126 (459)
T PRK14355 93 DGFSGTVLILCGDVPLLRAETLQGMLAAHRATGA 126 (459)
T ss_pred hccCCcEEEEECCccCcCHHHHHHHHHHHHhcCC
Confidence 4 47899999998 5678889999988765544
No 237
>PLN02190 cellulose synthase-like protein
Probab=84.44 E-value=2.7 Score=44.05 Aligned_cols=55 Identities=20% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCCceEEEEEecC---CChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHH
Q psy8674 267 DLPKASVILVFHN---EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 321 (439)
Q Consensus 267 ~~p~vsiiip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~ 321 (439)
++|.|.|.|+|++ |++..+..++-|+++-+||..+.-+.|.|||...-|.+...+
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~E 148 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKE 148 (756)
T ss_pred cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHH
Confidence 5799999999999 777888999999999999977778899999999888774443
No 238
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=84.37 E-value=9.4 Score=34.21 Aligned_cols=101 Identities=8% Similarity=0.142 Sum_probs=61.5
Q ss_pred CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC----CCCCHHHHHHHHHhhc-
Q psy8674 279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT----EREGLIRTRSRGAKES- 353 (439)
Q Consensus 279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~----~~~g~~~a~n~g~~~a- 353 (439)
+.. ..+..+++.+.+....+ +|+|+-| ++. +.+.+++++..+.+.+.+ ...|...+...|++..
T Consensus 22 ~Gk-pLi~~ti~~a~~s~~~d---~IvVstd---~~~----i~~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~ 90 (222)
T TIGR03584 22 CGK-PMIAYSIEAALNSGLFD---KVVVSTD---DEE----IAEVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELK 90 (222)
T ss_pred CCc-CHHHHHHHHHHhCCCCC---EEEEeCC---CHH----HHHHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHh
Confidence 344 68888999887754322 5555322 222 223344443223333222 2345666777777654
Q ss_pred ---CCCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEee
Q psy8674 354 ---RGEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPV 390 (439)
Q Consensus 354 ---~~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~ 390 (439)
..|.++++++|.-+ .++.+.++++.+.++....++++
T Consensus 91 ~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv 131 (222)
T TIGR03584 91 LQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSV 131 (222)
T ss_pred hcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 36999999999986 79999999999987544444443
No 239
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=83.73 E-value=30 Score=30.89 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=56.5
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEE-EcCCCCCHHHHHHHHHhh
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLI-RNTEREGLIRTRSRGAKE 352 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i-~~~~~~g~~~a~n~g~~~ 352 (439)
.+|..+. ..|..+|+++..+... +++||-. ....... .+.........++.++ ..+...|.+.+.-.|...
T Consensus 23 ll~i~g~--pli~~~l~~l~~~g~~----~ivvv~~-~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~g~~~~l~~a~~~ 94 (231)
T cd04183 23 LIEVDGK--PMIEWVIESLAKIFDS----RFIFICR-DEHNTKF-HLDESLKLLAPNATVVELDGETLGAACTVLLAADL 94 (231)
T ss_pred eeEECCE--EHHHHHHHhhhccCCc----eEEEEEC-hHHhhhh-hHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHHHhh
Confidence 3465564 5888899988875421 5666653 2211111 2222222212234433 234567888888888887
Q ss_pred cC-CCEEEEEcCCCccCCCChHHHHHh
Q psy8674 353 SR-GEVIVFLDAHCEVGLNWLPPLLAP 378 (439)
Q Consensus 353 a~-~d~i~~ld~D~~~~~~~l~~l~~~ 378 (439)
.. .+.++++++|..+..+....+..+
T Consensus 95 l~~~~~~lv~~~D~i~~~~~~~~~~~~ 121 (231)
T cd04183 95 IDNDDPLLIFNCDQIVESDLLAFLAAF 121 (231)
T ss_pred cCCCCCEEEEecceeeccCHHHHHHHh
Confidence 64 477888999998877755444333
No 240
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=83.70 E-value=3.7 Score=37.68 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=52.5
Q ss_pred cCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhh
Q psy8674 40 RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKK 119 (439)
Q Consensus 40 ~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (439)
.-+|++++|+|+.+...-|..++..+..+....++........... .. +..
T Consensus 86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~-~~------------~~~---------------- 136 (252)
T PF02434_consen 86 DKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEII-HR------------FNP---------------- 136 (252)
T ss_dssp T-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE------------------------------------------
T ss_pred CceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceee-cc------------ccc----------------
Confidence 4599999999999987777777776664443333211100000000 00 000
Q ss_pred ccCCCCCccCccc-cceEEEEeHHHHHHhC------CCCCCCC-CccchhhHHHHHHHH-hCCcEEEecccceecccccc
Q psy8674 120 RKYNSEPYKSPTH-AGGLFAMDRAFFLELG------GYDPGLL-VWGGENFELSFKIWM-CGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 120 ~~~~~~~~~~~~~-~g~~~~irr~~f~~iG------gfde~~~-~~~~ED~Dl~~Rl~~-~G~~i~~~p~~~v~H~~~~~ 190 (439)
.........+. .|+.++++|.+..++. .+-+... +...||..+++-+.. .|.++...| ..|..++.
T Consensus 137 --~~~~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~---~fhs~~~~ 211 (252)
T PF02434_consen 137 --NKSKDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSP---LFHSHLEN 211 (252)
T ss_dssp -----------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-T---T---SSS-
T ss_pred --cccCcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeech---hhcccCcc
Confidence 00000111122 4577999999999982 2221111 122599999999988 888765543 45555444
No 241
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=83.57 E-value=17 Score=33.00 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=62.0
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC-----------CC
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-----------EG 341 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~-----------~g 341 (439)
|++.+=+.-...+..++.|++..+.. ..+.|.|+.++-++...+ .++++.......++++..+.. ..
T Consensus 3 I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~-~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 80 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKK-KLKELLKKYNSSIEFIKIDNDDFKFFPATTDHIS 80 (248)
T ss_pred EEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHH-HHHHHHHhcCCeEEEEEcCHHHHhcCCccccccc
Confidence 44444433337788889999986652 133888888887766655 777776654445666554221 10
Q ss_pred -HHHHHHHHHhhc-CCCEEEEEcCCCccCCCChHHHHHh
Q psy8674 342 -LIRTRSRGAKES-RGEVIVFLDAHCEVGLNWLPPLLAP 378 (439)
Q Consensus 342 -~~~a~n~g~~~a-~~d~i~~ld~D~~~~~~~l~~l~~~ 378 (439)
...++-.....- .-+-+++||+|..+.. -|..|.+.
T Consensus 81 ~~~y~rl~l~~ll~~~~rvlylD~D~lv~~-di~~L~~~ 118 (248)
T cd04194 81 YATYYRLLIPDLLPDYDKVLYLDADIIVLG-DLSELFDI 118 (248)
T ss_pred HHHHHHHHHHHHhcccCEEEEEeCCEEecC-CHHHHhcC
Confidence 112223333333 3788999999998765 36666654
No 242
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=83.12 E-value=14 Score=37.04 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=62.4
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|..+ . ..|..+|+++.+.... +++||-.... . .+.++..... .++++..+...|.+.+...++...
T Consensus 23 ll~v~g-k-pli~~~l~~l~~~g~~----~iivvv~~~~-~----~i~~~~~~~~-~i~~v~~~~~~G~~~sv~~~~~~l 90 (450)
T PRK14360 23 LHPLGG-K-SLVERVLDSCEELKPD----RRLVIVGHQA-E----EVEQSLAHLP-GLEFVEQQPQLGTGHAVQQLLPVL 90 (450)
T ss_pred cCEECC-h-hHHHHHHHHHHhCCCC----eEEEEECCCH-H----HHHHHhcccC-CeEEEEeCCcCCcHHHHHHHHHHh
Confidence 344444 4 6888899988875432 5555544322 2 2233333322 477776555667777777777664
Q ss_pred C--CCEEEEEcCCCc-cCCCChHHHHHhhhcCCC
Q psy8674 354 R--GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 354 ~--~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~ 384 (439)
. .+.++++++|.. +.+..+..+++.+.....
T Consensus 91 ~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~ 124 (450)
T PRK14360 91 KGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNA 124 (450)
T ss_pred hccCCcEEEEeCCccccCHHHHHHHHHHHHhcCC
Confidence 3 456788999984 578889999988876554
No 243
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=83.07 E-value=28 Score=31.29 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCcEEEEEec--CCCChhHHHHhhhhhccC--cEEEEecCCc-ccCCCchHHHHHHHhcC
Q psy8674 4 KKLEDYIERFNGKVRLIRNT--EREGLIRTRSRGAKESRG--EVIVFLDAHC-EVGLNWLPPLLAPIYSD 68 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~--~n~G~a~arN~G~~~A~g--~~i~flD~D~-~~~~~~l~~l~~~~~~~ 68 (439)
+.+.+++.+++ ++++.++ ...|.+.+.. ++....+ +.++++++|+ .+++..|..+++.+..+
T Consensus 52 ~~i~~~~~~~~--~~~~~~~~~~~~gt~~~~~-~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~ 118 (239)
T cd02517 52 ERIADAVESFG--GKVVMTSPDHPSGTDRIAE-VAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD 118 (239)
T ss_pred HHHHHHHHHcC--CEEEEcCcccCchhHHHHH-HHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 34566666554 5555433 2345554333 3344444 8899999999 67899999999988655
No 244
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=83.07 E-value=7.3 Score=39.00 Aligned_cols=97 Identities=11% Similarity=0.083 Sum_probs=63.3
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
++|.-+. ..|..+|+++.+.... +++|+-+.. .+ .++++.... .+.++..+...|.+.+...++...
T Consensus 22 l~~i~gk--pli~~~l~~l~~~g~~----~iiiv~~~~-~~----~i~~~~~~~--~i~~~~~~~~~G~~~ai~~a~~~l 88 (451)
T TIGR01173 22 LHPLAGK--PMLEHVIDAARALGPQ----KIHVVYGHG-AE----QVRKALANR--DVNWVLQAEQLGTGHAVLQALPFL 88 (451)
T ss_pred hceeCCc--cHHHHHHHHHHhCCCC----eEEEEECCC-HH----HHHHHhcCC--CcEEEEcCCCCchHHHHHHHHHhc
Confidence 4444444 6888889888865432 666654432 22 233333332 366665555678888888888776
Q ss_pred C-CCEEEEEcCCC-ccCCCChHHHHHhhhcCC
Q psy8674 354 R-GEVIVFLDAHC-EVGLNWLPPLLAPIYSDR 383 (439)
Q Consensus 354 ~-~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~ 383 (439)
. .+.++++++|. .+++..+..+++.+.+..
T Consensus 89 ~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~ 120 (451)
T TIGR01173 89 PDDGDVLVLYGDVPLISAETLERLLEAHRQNG 120 (451)
T ss_pred CCCCcEEEEECCcCCcCHHHHHHHHHHHhhCC
Confidence 4 47899999998 467888999998876544
No 245
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=83.05 E-value=2.9 Score=39.78 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhc----CCCEEEEeeeeeecC
Q psy8674 339 REGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS----DRKIMTVPVIDGIDY 396 (439)
Q Consensus 339 ~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~----~~~~~v~~~~~~~~~ 396 (439)
-+-....||.|...|++++++++|.|..+.++.-+.+.+.+.. ...+.|+|....-..
T Consensus 112 ~YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaFE~~~~ 173 (317)
T PF13896_consen 112 LYPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAFETREG 173 (317)
T ss_pred CCChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeeeecccC
Confidence 3557889999999999999999999999999988887776654 344788898865443
No 246
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=82.94 E-value=16 Score=31.91 Aligned_cols=103 Identities=7% Similarity=0.019 Sum_probs=64.2
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH--cC-----CcEEEEEc------CCCC
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR--FN-----GKVRLIRN------TERE 340 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~-----~~v~~i~~------~~~~ 340 (439)
.+|..+.. ..|..+|+.+..... .+|+||-+...+. +.+.+.+. ++ ..+.++.. +...
T Consensus 23 llpv~g~~-pli~~~l~~l~~~gi----~~iivv~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (200)
T cd02508 23 AVPFGGRY-RLIDFPLSNMVNSGI----RNVGVLTQYKSRS----LNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYR 93 (200)
T ss_pred eeEECCee-eeHHHHHHHHHHCCC----CEEEEEeCCChHH----HHHHHhCCCcccCCCCCCCEEEeCcccCCCCCccc
Confidence 67777764 578888888877543 2777776654322 22322111 11 12445431 3457
Q ss_pred CHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhhcCCCEE
Q psy8674 341 GLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM 386 (439)
Q Consensus 341 g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~ 386 (439)
|.+.+...|..... .+.++++.+|.. .+.-+..+++...+.+..+
T Consensus 94 Gta~al~~a~~~i~~~~~~~~lv~~gD~v-~~~~~~~~l~~~~~~~~~~ 141 (200)
T cd02508 94 GTADAIYQNLDYIERSDPEYVLILSGDHI-YNMDYREMLDFHIESGADI 141 (200)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEecCCEE-EecCHHHHHHHHHHcCCCE
Confidence 88888888887653 578889999984 5567889988776655433
No 247
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=82.91 E-value=27 Score=31.66 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCcEEEEEec--CCCChhHHHHh--hhhhccCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeeeeeec
Q psy8674 5 KLEDYIERFNGKVRLIRNT--EREGLIRTRSR--GAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVIDG 79 (439)
Q Consensus 5 ~l~~~~~~~~~~i~~i~~~--~n~G~a~arN~--G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~ 79 (439)
.+.+.++++. ++++.+. ...|..+..-. ++.....++++.+|+|.- ++++.++.+++.+.+....++.+....
T Consensus 50 ~i~~~~~~~g--~~~v~~~~~~~~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~ 127 (238)
T TIGR00466 50 SVAQTCQKFG--IEVCMTSKHHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKI 127 (238)
T ss_pred HHHHHHHHcC--CEEEEeCCCCCChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeec
Confidence 3555666654 5555422 23343222221 111124689999999998 699999999999865433444333332
Q ss_pred cc------CCCcccccccCCCCccccccccccccccCCCc--hHHHhhccCCCCCcc-CccccceEEEEeHHHHHHhCCC
Q psy8674 80 ID------YQTWEFRSVYEPDHHYRGIFEWGMLYKENELP--EREAKKRKYNSEPYK-SPTHAGGLFAMDRAFFLELGGY 150 (439)
Q Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~g~~~~irr~~f~~iGgf 150 (439)
.+ .++....... ++ ..+.+....++ ....+ ....|.. ..+..-|..++|++.+++.-..
T Consensus 128 ~d~~~~~~p~~vk~v~~~-------~g--~alyfsr~~ip~~R~~~~---~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~ 195 (238)
T TIGR00466 128 HDAEEAFNPNAVKVVLDS-------QG--YALYFSRSLIPFDRDFFA---KRQTPVGDNLLRHIGIYGYRAGFIEEYVAW 195 (238)
T ss_pred CCHHHccCCCceEEEeCC-------CC--eEEEecCCCCCCCCCccc---ccccccccceeEEEEEEeCCHHHHHHHHhC
Confidence 22 1111111000 00 00011111111 00000 0011111 1122445789999999997666
Q ss_pred CCCCCCccchhhHHHHHHHHhCCcEEEec
Q psy8674 151 DPGLLVWGGENFELSFKIWMCGGSIEWVP 179 (439)
Q Consensus 151 de~~~~~~~ED~Dl~~Rl~~~G~~i~~~p 179 (439)
.+.-. --.|..|- +|+.+.|++|....
T Consensus 196 ~~~~l-e~~e~leq-lr~le~g~~i~~~~ 222 (238)
T TIGR00466 196 KPCVL-EEIEKLEQ-LRVLYYGEKIHVKI 222 (238)
T ss_pred CCCcc-cccchhHH-HhhhhcCCceEEEE
Confidence 55542 11255553 89999999988755
No 248
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=82.89 E-value=2.5 Score=36.35 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=42.4
Q ss_pred cEEEEEec-CCCChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHHHHH
Q psy8674 16 KVRLIRNT-EREGLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPI 65 (439)
Q Consensus 16 ~i~~i~~~-~n~G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~ 65 (439)
.++++.++ ...|...+...|++..+.+.++++.+|+- ++++.++.+++.+
T Consensus 58 ~~~~v~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 58 GVPVIPDEPPGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCcEeeCCCCCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 36677654 36788999999999988999999999996 6999999999887
No 249
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=82.68 E-value=11 Score=33.36 Aligned_cols=104 Identities=17% Similarity=0.258 Sum_probs=63.6
Q ss_pred CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc-CCCE
Q psy8674 279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-RGEV 357 (439)
Q Consensus 279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a-~~d~ 357 (439)
+.. ..|..+++.+...... .+|+||-+.... . .+....... ..+.++.... +...+...|+... ..++
T Consensus 25 ~gk-pll~~~l~~l~~~~~~---~~ivVv~~~~~~---~-~~~~~~~~~-~~~~~~~~~~--~~~~sl~~~l~~~~~~d~ 93 (217)
T TIGR00453 25 GGR-PLLEHTLDAFLAHPAI---DEVVVVVSPEDQ---E-FFQKYLVAR-AVPKIVAGGD--TRQDSVRNGLKALKDAEW 93 (217)
T ss_pred CCe-EHHHHHHHHHhcCCCC---CEEEEEEChHHH---H-HHHHHhhcC-CcEEEeCCCc--hHHHHHHHHHHhCCCCCE
Confidence 345 6888999988764222 267777543211 1 222222211 1244443222 3556777788776 6899
Q ss_pred EEEEcCCCc-cCCCChHHHHHhhhcCCC-EEEEeeeee
Q psy8674 358 IVFLDAHCE-VGLNWLPPLLAPIYSDRK-IMTVPVIDG 393 (439)
Q Consensus 358 i~~ld~D~~-~~~~~l~~l~~~~~~~~~-~~v~~~~~~ 393 (439)
++++++|.- ++++.+..+++.+...+. ..++|..+.
T Consensus 94 vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~ 131 (217)
T TIGR00453 94 VLVHDAARPFVPKELLDRLLEALRKAGAAILALPVADT 131 (217)
T ss_pred EEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccce
Confidence 999999986 589999999998876544 445555443
No 250
>KOG1022|consensus
Probab=82.37 E-value=2.9 Score=41.52 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=76.9
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674 266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 345 (439)
Q Consensus 266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a 345 (439)
..+...+.||-||++- +.|...+.....- |. ..+|+||=|.-..+--.+.+.... +..+++....+|. -..
T Consensus 440 ~~~qgFTlim~TYdR~-d~L~k~v~~ys~v--Ps-L~kIlVVWNnq~k~PP~es~~~~~---~VPlr~r~qkeNs--LnN 510 (691)
T KOG1022|consen 440 GHSQGFTLIMLTYDRV-DLLKKLVKHYSRV--PS-LKKILVVWNNQGKNPPPESLEPDI---AVPLRFRQQKENS--LNN 510 (691)
T ss_pred CcccceeeeeehHHHH-HHHHHHHHHHhhC--CC-cceEEEEecCCCCCCChhhccccC---CccEEEEehhhhh--hhc
Confidence 4556799999999998 8888888876543 33 348888877411111111222221 2246666665552 223
Q ss_pred HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674 346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 388 (439)
Q Consensus 346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 388 (439)
+-.-....+.+-|+-+|+|.+++.+.|+--.+..++.++.+|+
T Consensus 511 RF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~lVG 553 (691)
T KOG1022|consen 511 RFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDRLVG 553 (691)
T ss_pred ccccCcccccceeEEecCceeeecchhHHHHHHHHhCccceec
Confidence 3334455679999999999999999999999999998887666
No 251
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=81.71 E-value=18 Score=31.28 Aligned_cols=95 Identities=13% Similarity=0.164 Sum_probs=61.5
Q ss_pred EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc-
Q psy8674 275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES- 353 (439)
Q Consensus 275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a- 353 (439)
++..+ . ..|...++++..... . +|+||-+..++. .+.+.+.. ...++ .....|.......|++..
T Consensus 22 l~i~G-k-plI~~vi~~l~~~~i-~---~I~Vv~~~~~~~-----~~~~l~~~--~~~~~-~~~g~G~~~~l~~al~~~~ 87 (183)
T TIGR00454 22 IEVCG-R-CLIDHVLSPLLKSKV-N---NIIIATSPHTPK-----TEEYINSA--YKDYK-NASGKGYIEDLNECIGELY 87 (183)
T ss_pred eEECC-E-EHHHHHHHHHHhCCC-C---EEEEEeCCCHHH-----HHHHHhhc--CcEEE-ecCCCCHHHHHHHHhhccc
Confidence 34444 4 688889998875432 1 666665433332 23333321 12233 356678888999998853
Q ss_pred CCCEEEEEcCCCc-cCCCChHHHHHhhhcCC
Q psy8674 354 RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR 383 (439)
Q Consensus 354 ~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~ 383 (439)
..+.++++-+|.. +.+..+..+++.+...+
T Consensus 88 ~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~ 118 (183)
T TIGR00454 88 FSEPFLVVSSDLINLRSKIIDSIVDYYYCIK 118 (183)
T ss_pred CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcC
Confidence 3678999999987 58999999999875533
No 252
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=81.55 E-value=4.2 Score=42.51 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=44.5
Q ss_pred CcEEEEEecCCCCh-----hHHHHhhhhhc----cCcEEEEecCCccc-CCCchHHHHHHHhcC
Q psy8674 15 GKVRLIRNTEREGL-----IRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIYSD 68 (439)
Q Consensus 15 ~~i~~i~~~~n~G~-----a~arN~G~~~A----~g~~i~flD~D~~~-~~~~l~~l~~~~~~~ 68 (439)
|.+.+|..+++.|+ |+|.|.-++.+ .|+||+-||+|..+ .|..+.+.+-.+.+.
T Consensus 166 P~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~ 229 (720)
T PF03552_consen 166 PMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDP 229 (720)
T ss_pred CeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccC
Confidence 58999999998885 88888887654 69999999999987 688888888777643
No 253
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=81.28 E-value=4.2 Score=44.36 Aligned_cols=94 Identities=9% Similarity=0.183 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHh--cCCcCCcceEEEEeCCCC--------hhhHHHHHHHHHH----------HcCCcEEEEEcCCCCC-
Q psy8674 283 SSLMRTVHSIIK--RTPAQYLEEIILVDDFSS--------KADLDQKLEDYIQ----------RFNGKVRLIRNTEREG- 341 (439)
Q Consensus 283 ~~l~~~l~sl~~--q~~~~~~~eiivvdd~s~--------d~t~~~~~~~~~~----------~~~~~v~~i~~~~~~g- 341 (439)
+.++.-|+++.+ +..+. |--+.+||+. ..+ +++-+.+ +.| .+.++..+++.|
T Consensus 457 Ee~k~RIe~l~a~~~~~p~---~~~~m~dgt~W~g~~~~dHp~---IiqVll~~~~~~d~~g~~lP-~LVYVSREKRPg~ 529 (1079)
T PLN02638 457 EEFKVRINGLVAKAQKVPE---EGWIMQDGTPWPGNNTRDHPG---MIQVFLGHSGGLDTEGNELP-RLVYVSREKRPGF 529 (1079)
T ss_pred HHHHHHHHHHHhhccccCC---ccccccCCccCCCCCCCCCHH---HHHHHhcCCCcccccccccc-ceEEEecccCCCC
Confidence 556667777763 33332 4456677771 222 3333321 233 567777776655
Q ss_pred ----HHHHHHHHHhh----cCCCEEEEEcCCCccC-CCChHHHHHhhhcCC
Q psy8674 342 ----LIRTRSRGAKE----SRGEVIVFLDAHCEVG-LNWLPPLLAPIYSDR 383 (439)
Q Consensus 342 ----~~~a~n~g~~~----a~~d~i~~ld~D~~~~-~~~l~~l~~~~~~~~ 383 (439)
+++|+|..++. ++++||+.+|.|..+. |..+.+.+-.|.+..
T Consensus 530 ~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lDp~ 580 (1079)
T PLN02638 530 QHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPN 580 (1079)
T ss_pred CcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcCcc
Confidence 89999999954 5799999999999886 999999999888654
No 254
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=81.24 E-value=40 Score=32.38 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=70.1
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC----------
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE---------- 338 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~---------- 338 (439)
..+.|+..+=+.-...+.-+|.|++..... ..+.+.|++++-+++..+ .+.++.+.++..+.++....
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~-~l~~l~~~~~~~i~~~~id~~~~~~~~~~~ 101 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQ-RFSALAKQYNTRINIYLINCERLKSLPSTK 101 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHH-HHHHHHHhcCCeEEEEEeCHHHHhCCcccC
Confidence 457787777655457888899999865432 234899998888877666 77787777665666654321
Q ss_pred CCCHH-HHHHHHHhhc--CCCEEEEEcCCCccCCCChHHHHHh
Q psy8674 339 REGLI-RTRSRGAKES--RGEVIVFLDAHCEVGLNWLPPLLAP 378 (439)
Q Consensus 339 ~~g~~-~a~n~g~~~a--~~d~i~~ld~D~~~~~~~l~~l~~~ 378 (439)
....+ ..|-...+.- .-+-++.||+|..+.. .|..|...
T Consensus 102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~-dl~~L~~~ 143 (334)
T PRK15171 102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKG-SIKELIDL 143 (334)
T ss_pred cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecC-CHHHHHhc
Confidence 11221 2232233333 4789999999988765 47777755
No 255
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=81.00 E-value=18 Score=33.21 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=63.5
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHH---H---HHHc--------------CCcEEE
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED---Y---IQRF--------------NGKVRL 333 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~---~---~~~~--------------~~~v~~ 333 (439)
.+|+.+. ..|..+|+++.+.... +|+||-+..... +.+.+.. + .... +..+.+
T Consensus 25 llpv~gk--pli~~~l~~l~~~gi~----~i~iv~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (267)
T cd02541 25 MLPIVDK--PVIQYIVEEAVAAGIE----DIIIVTGRGKRA-IEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHY 97 (267)
T ss_pred eeEECCE--EHHHHHHHHHHHCCCC----EEEEEeCCchHH-HHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEE
Confidence 4566664 6888889988875332 666665543221 1112210 0 0000 124556
Q ss_pred EEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCC--ChHHHHHhhhcCCC
Q psy8674 334 IRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLN--WLPPLLAPIYSDRK 384 (439)
Q Consensus 334 i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~--~l~~l~~~~~~~~~ 384 (439)
+..+...|.+.+...+......+-++++.+|..+... .+..+++.......
T Consensus 98 ~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (267)
T cd02541 98 VRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA 150 (267)
T ss_pred EEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence 6556668999999999888766777888899877654 58899987754333
No 256
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=80.94 E-value=31 Score=32.48 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=62.5
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHH-------------------HHH--HcCCcEE
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED-------------------YIQ--RFNGKVR 332 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~-------------------~~~--~~~~~v~ 332 (439)
.+|+.+. ..|...|+.+...... +|+||-.... +...+.+.. +.. .+..+++
T Consensus 28 LvpV~gk--PiI~~vl~~l~~~Gi~----~ivivv~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (297)
T TIGR01105 28 MLPIVDK--PMIQYIVDEIVAAGIK----EIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIM 100 (297)
T ss_pred eeEECCE--EHHHHHHHHHHHCCCC----EEEEEecCCh-HHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEE
Confidence 5666665 4888888888875432 6776665432 222222211 000 1122467
Q ss_pred EEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCC-------CChHHHHHhhhcCC
Q psy8674 333 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGL-------NWLPPLLAPIYSDR 383 (439)
Q Consensus 333 ~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~-------~~l~~l~~~~~~~~ 383 (439)
++..++..|.+.|.-.+......+-++++.+|..+++ -.+..|++...+..
T Consensus 101 ~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~ 158 (297)
T TIGR01105 101 NVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETG 158 (297)
T ss_pred EeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhC
Confidence 7777778999999999988775443444458877654 26778888765433
No 257
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=80.69 E-value=8.9 Score=34.32 Aligned_cols=90 Identities=16% Similarity=0.313 Sum_probs=57.9
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC--CCCHHHHHHHHHh
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGLIRTRSRGAK 351 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~g~~~a~n~g~~ 351 (439)
.+|.-+ . ..|...|.++.+.... +|+||-.. ... .+.++.... ..+.++.++. ..|.+.+...+..
T Consensus 23 l~~~~g-~-~li~~~l~~l~~~gi~----~i~vv~~~-~~~----~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~ 90 (229)
T cd02523 23 LLEING-K-PLLERQIETLKEAGID----DIVIVTGY-KKE----QIEELLKKY-PNIKFVYNPDYAETNNIYSLYLARD 90 (229)
T ss_pred eeeECC-E-EHHHHHHHHHHHCCCc----eEEEEecc-CHH----HHHHHHhcc-CCeEEEeCcchhhhCcHHHHHHHHH
Confidence 344444 4 6888899988875322 67766543 222 333333332 2467666543 4778888888888
Q ss_pred hcCCCEEEEEcCCCccCCCChHHHH
Q psy8674 352 ESRGEVIVFLDAHCEVGLNWLPPLL 376 (439)
Q Consensus 352 ~a~~d~i~~ld~D~~~~~~~l~~l~ 376 (439)
.. .+.++++++|..+.++.++.++
T Consensus 91 ~~-~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 91 FL-DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred Hc-CCCEEEEeCCEecCHHHHHHHH
Confidence 77 6788999999988776555554
No 258
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=80.33 E-value=12 Score=34.25 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc--CCCEEEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES--RGEVIVF 360 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a--~~d~i~~ 360 (439)
..|..+++.+...... .+|+||-+..... .++.....++..+.++ ....+.....-.|++.. ..+++++
T Consensus 53 pll~~tl~~~~~~~~i---~~IvVV~~~~~~~----~~~~~~~~~~~~i~~v--~gg~~r~~SV~~gl~~l~~~~~~Vli 123 (252)
T PLN02728 53 PIALYSLYTFARMPEV---KEIVVVCDPSYRD----VFEEAVENIDVPLKFA--LPGKERQDSVFNGLQEVDANSELVCI 123 (252)
T ss_pred EHHHHHHHHHHhCCCC---CeEEEEeCHHHHH----HHHHHHHhcCCceEEc--CCCCchHHHHHHHHHhccCCCCEEEE
Confidence 5778888887753222 2777776533221 3333333433334443 23334556677777765 3578888
Q ss_pred EcCCCc-cCCCChHHHHHhhhcCCC-EEEEeeeeee
Q psy8674 361 LDAHCE-VGLNWLPPLLAPIYSDRK-IMTVPVIDGI 394 (439)
Q Consensus 361 ld~D~~-~~~~~l~~l~~~~~~~~~-~~v~~~~~~~ 394 (439)
.|++-- ++++.+..+++....... +.+.|..+.+
T Consensus 124 hDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~dti 159 (252)
T PLN02728 124 HDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATI 159 (252)
T ss_pred ecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchhhE
Confidence 888655 578999999998877654 3344555544
No 259
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=79.87 E-value=24 Score=35.38 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=64.3
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|.-+. ..|..+|+++.+.. . +|+|+-+.. . + .+.++.. ..+.++..+...|.+.+...++...
T Consensus 22 l~~v~gk--pli~~~l~~l~~~~---~--~i~vv~~~~-~---~-~i~~~~~---~~~~~~~~~~~~g~~~ai~~a~~~l 86 (448)
T PRK14357 22 LHKISGK--PMINWVIDTAKKVA---Q--KVGVVLGHE-A---E-LVKKLLP---EWVKIFLQEEQLGTAHAVMCARDFI 86 (448)
T ss_pred eeEECCe--eHHHHHHHHHHhcC---C--cEEEEeCCC-H---H-HHHHhcc---cccEEEecCCCCChHHHHHHHHHhc
Confidence 5566554 68888999888742 2 666664422 1 2 3333332 1355555566678888888888776
Q ss_pred C-CCEEEEEcCCC-ccCCCChHHHHHhhhcCCCE
Q psy8674 354 R-GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKI 385 (439)
Q Consensus 354 ~-~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~~ 385 (439)
. .+.++++++|. .+.+..+..+++.+.+.+..
T Consensus 87 ~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d 120 (448)
T PRK14357 87 EPGDDLLILYGDVPLISENTLKRLIEEHNRKGAD 120 (448)
T ss_pred CcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCe
Confidence 4 58999999998 45777889999887655443
No 260
>PLN02436 cellulose synthase A
Probab=79.84 E-value=4.3 Score=44.24 Aligned_cols=53 Identities=9% Similarity=0.128 Sum_probs=45.4
Q ss_pred CcEEEEEecCCCCh-----hHHHHhhhhhc----cCcEEEEecCCccc-CCCchHHHHHHHhc
Q psy8674 15 GKVRLIRNTEREGL-----IRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIYS 67 (439)
Q Consensus 15 ~~i~~i~~~~n~G~-----a~arN~G~~~A----~g~~i~flD~D~~~-~~~~l~~l~~~~~~ 67 (439)
|++.+|..+++.|+ |+|.|..++.+ .++||+-||+|..+ .|..+.+.+-.|..
T Consensus 532 P~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD 594 (1094)
T PLN02436 532 PRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 594 (1094)
T ss_pred ceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcC
Confidence 48999999998884 89999999855 69999999999987 78888888877764
No 261
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=79.64 E-value=11 Score=32.91 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=47.1
Q ss_pred cEEEEEec-CCCChhHHHHhhhhhccCc--EEEEecCCcc-cCCCchHHHHHHHhcC
Q psy8674 16 KVRLIRNT-EREGLIRTRSRGAKESRGE--VIVFLDAHCE-VGLNWLPPLLAPIYSD 68 (439)
Q Consensus 16 ~i~~i~~~-~n~G~a~arN~G~~~A~g~--~i~flD~D~~-~~~~~l~~l~~~~~~~ 68 (439)
+++++.|+ -..|.+...-.|++.+.++ .++++-+|+- +.++.+.++++.+...
T Consensus 69 ~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 69 GVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred CeEEEeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 58888877 4679999999999999876 9999999997 7999999999998866
No 262
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=79.58 E-value=1.7 Score=38.74 Aligned_cols=62 Identities=10% Similarity=0.150 Sum_probs=47.3
Q ss_pred hHHHHHHHHhcCCcEEEEEecCC--CChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHH
Q psy8674 3 DKKLEDYIERFNGKVRLIRNTER--EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 65 (439)
Q Consensus 3 ~~~l~~~~~~~~~~i~~i~~~~n--~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~ 65 (439)
.+.+++|+.+++-..+++.|+.- .+-+...=.|....+++ ++.+|+|...+|.+++.++++-
T Consensus 58 ~~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-fii~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 58 ADLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-FILVMSDHVYEPSILERLLEAP 121 (239)
T ss_pred HHHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhcCc-EEEEeCCEeecHHHHHHHHhCc
Confidence 46789999999867888887532 12233455677788888 7889999999999999988753
No 263
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=79.00 E-value=12 Score=32.61 Aligned_cols=94 Identities=9% Similarity=0.135 Sum_probs=64.3
Q ss_pred cCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCC-CHHHHHHHHHhhcCCC
Q psy8674 278 HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE-GLIRTRSRGAKESRGE 356 (439)
Q Consensus 278 ~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~-g~~~a~n~g~~~a~~d 356 (439)
.|.. ..++..++.+..|.. +++|+-+...+ . +. .+ .+.++...... |.-.+.-.|++...++
T Consensus 26 ~~g~-~lie~v~~~L~~~~~-----~vvi~~~~~~~-----~---~~-~~--g~~vv~D~~~~~GPL~Gi~~al~~~~~~ 88 (192)
T COG0746 26 LNGR-PLIEHVIDRLRPQVD-----VVVISANRNQG-----R---YA-EF--GLPVVPDELPGFGPLAGILAALRHFGTE 88 (192)
T ss_pred eCCe-EHHHHHHHHhcccCC-----EEEEeCCCchh-----h---hh-cc--CCceeecCCCCCCCHHHHHHHHHhCCCC
Confidence 3445 566666776666542 34444333221 1 11 11 36677666665 9999999999999999
Q ss_pred EEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEE
Q psy8674 357 VIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTV 388 (439)
Q Consensus 357 ~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~ 388 (439)
+++++-.|+-+ +++.++.|...+...+..++.
T Consensus 89 ~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~~ 121 (192)
T COG0746 89 WVLVLPCDMPFIPPELVERLLSAFKQTGAAIVP 121 (192)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhhcccCCcEEE
Confidence 99999999985 788899999998876644443
No 264
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=78.87 E-value=19 Score=36.49 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=64.5
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|.-+. ..|..+|+++.+.... +|+||-+... + .++++... ..+.++..+...|.+.+.-.|+...
T Consensus 29 llpi~gk--pli~~~l~~l~~~gi~----~ivvv~~~~~-~----~i~~~~~~--~~i~~v~~~~~~Gt~~al~~~~~~l 95 (481)
T PRK14358 29 LHPVAGR--PMVAWAVKAARDLGAR----KIVVVTGHGA-E----QVEAALQG--SGVAFARQEQQLGTGDAFLSGASAL 95 (481)
T ss_pred ecEECCe--eHHHHHHHHHHhCCCC----eEEEEeCCCH-H----HHHHHhcc--CCcEEecCCCcCCcHHHHHHHHHHh
Confidence 3455554 6888899988775322 6777654322 2 23333332 2477777666778888888887765
Q ss_pred C--CCEEEEEcCCC-ccCCCChHHHHHhhhcCCCE
Q psy8674 354 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKI 385 (439)
Q Consensus 354 ~--~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~~ 385 (439)
. .+-++++++|. .+.+..+..|++........
T Consensus 96 ~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~ 130 (481)
T PRK14358 96 TEGDADILVLYGDTPLLRPDTLRALVADHRAQGSA 130 (481)
T ss_pred hCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 3 23367789998 46788899999887665543
No 265
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=78.75 E-value=31 Score=31.40 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=58.3
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEE--------c---------
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIR--------N--------- 336 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~--------~--------- 336 (439)
.+|+-+. ..|..+++.+...... +|+||-.-.. +.+++.+.+.... ...+.+.. .
T Consensus 23 llpv~~~--p~i~~~~~~~~~~gi~----~i~iv~~~~~-~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (253)
T cd02524 23 MVEIGGR--PILWHIMKIYSHYGHN----DFILCLGYKG-HVIKEYFLNYFLH-NSDVTIDLGTNRIELHNSDIEDWKVT 94 (253)
T ss_pred EEEECCE--EHHHHHHHHHHhCCCc----eEEEECCCCH-HHHHHHHHhhhhh-cCceeEeecccceeeeccccccccee
Confidence 5666565 4777777777765322 6777655332 2233233332111 11222211 1
Q ss_pred ----CCCCCHHHHHHHHHhhcCC-CEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 337 ----TEREGLIRTRSRGAKESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 337 ----~~~~g~~~a~n~g~~~a~~-d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
....|.+.++-.+.+...+ +.++++++|..+..+. ..+++.......
T Consensus 95 ~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~~~~ 146 (253)
T cd02524 95 LVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRSHGK 146 (253)
T ss_pred ecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHHcCC
Confidence 1134567777778887765 8899999998877655 888876655443
No 266
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=78.30 E-value=12 Score=32.87 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=47.4
Q ss_pred HHHHHHHHhc---CCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeE
Q psy8674 4 KKLEDYIERF---NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM 72 (439)
Q Consensus 4 ~~l~~~~~~~---~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~ 72 (439)
+.+.+++... ...+.++..++..|.+.+.-.++.....+.++++++|.....+ +..+++.+.+....+
T Consensus 56 ~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~ 126 (217)
T cd04181 56 EQIEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLD-LSELLRFHREKGADA 126 (217)
T ss_pred HHHHHHHcChhhcCceEEEEeCCCCCccHHHHHHhhhhcCCCCEEEEECCeecCcC-HHHHHHHHHhcCCCE
Confidence 4455665542 2357777766668888888888887777899999999988777 455556665444433
No 267
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=78.15 E-value=43 Score=30.29 Aligned_cols=94 Identities=11% Similarity=0.137 Sum_probs=53.9
Q ss_pred EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc-C-CCCCHHHHHHHHHhh
Q psy8674 275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN-T-EREGLIRTRSRGAKE 352 (439)
Q Consensus 275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~-~-~~~g~~~a~n~g~~~ 352 (439)
++..+ . ..|..+++.+.... . .+|+|+-+ ++ .+.+..+.++ +.++.. . ...|.. ....+++.
T Consensus 19 ~~l~G-k-Pli~~~le~~~~~~-~---d~VvVvt~---~~----~i~~~~~~~g--~~~v~~~~~~~~Gt~-r~~~~~~~ 82 (238)
T TIGR00466 19 EDIFG-K-PMIVHVAENANESG-A---DRCIVATD---DE----SVAQTCQKFG--IEVCMTSKHHNSGTE-RLAEVVEK 82 (238)
T ss_pred cccCC-c-CHHHHHHHHHHhCC-C---CeEEEEeC---HH----HHHHHHHHcC--CEEEEeCCCCCChhH-HHHHHHHH
Confidence 34444 4 68888888876532 2 27777643 12 2233334433 444432 2 223322 22223322
Q ss_pred ---cCCCEEEEEcCCCc-cCCCChHHHHHhhhcCCC
Q psy8674 353 ---SRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 353 ---a~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~ 384 (439)
...++++++++|.- ++++.|..+++.+.....
T Consensus 83 l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~ 118 (238)
T TIGR00466 83 LALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNV 118 (238)
T ss_pred hCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCC
Confidence 25689999999998 589999999999865433
No 268
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=78.03 E-value=16 Score=36.74 Aligned_cols=93 Identities=6% Similarity=0.005 Sum_probs=59.8
Q ss_pred EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc-
Q psy8674 275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES- 353 (439)
Q Consensus 275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a- 353 (439)
+|..+ . ..|..+++++..... .+|+||-....+ .++++... ..++++..+...|.+.+.-.+++..
T Consensus 28 ~~i~g-k-pli~~~l~~l~~~~~----~~iivv~~~~~~-----~i~~~~~~--~~~~~v~~~~~~Gt~~al~~a~~~l~ 94 (456)
T PRK14356 28 QTLLG-E-PMLRFVYRALRPLFG----DNVWTVVGHRAD-----MVRAAFPD--EDARFVLQEQQLGTGHALQCAWPSLT 94 (456)
T ss_pred cccCC-C-cHHHHHHHHHHhcCC----CcEEEEECCCHH-----HHHHhccc--cCceEEEcCCCCCcHHHHHHHHHHHh
Confidence 34444 4 688888888865431 167666443221 23333322 1466676666677777777776654
Q ss_pred --CCCEEEEEcCCC-ccCCCChHHHHHhhh
Q psy8674 354 --RGEVIVFLDAHC-EVGLNWLPPLLAPIY 380 (439)
Q Consensus 354 --~~d~i~~ld~D~-~~~~~~l~~l~~~~~ 380 (439)
..++++++++|. .+++..++.+++...
T Consensus 95 ~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 95 AAGLDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred hcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 368999999998 468888999998765
No 269
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=77.89 E-value=43 Score=32.28 Aligned_cols=98 Identities=11% Similarity=0.128 Sum_probs=59.7
Q ss_pred EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cCCcEEEEEcCCCCCHHHHHHHHHh
Q psy8674 275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGAK 351 (439)
Q Consensus 275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~v~~i~~~~~~g~~~a~n~g~~ 351 (439)
+|.-+. ..|..+|+++.+... .+|+|+-..-... .+.++... ++..+.++..+...|.+.+.-.+..
T Consensus 25 ~pv~g~--pli~~~l~~l~~~gi----~~i~vv~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~ 94 (353)
T TIGR01208 25 IPVANK--PILQYAIEDLAEAGI----TDIGIVVGPVTGE----EIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARD 94 (353)
T ss_pred cEECCE--eHHHHHHHHHHHCCC----CEEEEEeCCCCHH----HHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHH
Confidence 344454 588888888886532 1666665441222 22333322 2224556655566788888888888
Q ss_pred hcCCCEEEEEcCCCccCCCChHHHHHhhhcCC
Q psy8674 352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 383 (439)
Q Consensus 352 ~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~ 383 (439)
....+-++++.+|..++ ..+..+++.+....
T Consensus 95 ~l~~~~~li~~gD~~~~-~~l~~l~~~~~~~~ 125 (353)
T TIGR01208 95 FLGDDDFVVYLGDNLIQ-DGISRFVKSFEEKD 125 (353)
T ss_pred hcCCCCEEEEECCeecC-ccHHHHHHHHHhcC
Confidence 76544466677888764 56788888765444
No 270
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=77.83 E-value=35 Score=31.16 Aligned_cols=104 Identities=11% Similarity=0.092 Sum_probs=62.0
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHH------------------HHH-c-CCcEEE
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDY------------------IQR-F-NGKVRL 333 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~------------------~~~-~-~~~v~~ 333 (439)
.+|.-+. ..|...|+++.+.... +|+||-.... ..+.+.+..- .+. . +..+.+
T Consensus 25 llpi~g~--pli~~~l~~l~~~gi~----~v~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (260)
T TIGR01099 25 MLPIVDK--PLIQYVVEEAVEAGIE----DILIVTGRGK-RAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFY 97 (260)
T ss_pred eEEECCE--EHHHHHHHHHHhCCCC----EEEEEeCCcH-HHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEE
Confidence 4566554 5888888888764322 6666655432 2222222100 000 0 113444
Q ss_pred EEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCC--ChHHHHHhhhcCCC
Q psy8674 334 IRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLN--WLPPLLAPIYSDRK 384 (439)
Q Consensus 334 i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~--~l~~l~~~~~~~~~ 384 (439)
.......|.+.+...+......+-++++.+|..+... .+..+++.....+.
T Consensus 98 ~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (260)
T TIGR01099 98 VRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGC 150 (260)
T ss_pred EecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCC
Confidence 5455567888888888887655667888888877554 78999987765444
No 271
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=77.27 E-value=6 Score=29.93 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCCh----hHHHHhhhhh-ccCcEEEEecCCcccCCC
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGL----IRTRSRGAKE-SRGEVIVFLDAHCEVGLN 56 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~----a~arN~G~~~-A~g~~i~flD~D~~~~~~ 56 (439)
+...+++++++ .++++........ ...+|.-++. ..++|++++|+|-.+.+.
T Consensus 31 D~t~~~l~~~~-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DEfl~~~ 87 (97)
T PF13704_consen 31 DGTREILRALP-GVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADEFLVPP 87 (97)
T ss_pred ccHHHHHHhCC-CcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeEEEecC
Confidence 34566777776 7888887654421 1233343334 478999999999987443
No 272
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=76.98 E-value=50 Score=30.17 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-----CC--CH----HHHHHHHHh
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-----RE--GL----IRTRSRGAK 351 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-----~~--g~----~~a~n~g~~ 351 (439)
..+.-++.|++..+...+ .+.|++|+-+++..+ .+.++.+.++..+.++.... .. .. +.++ ..+.
T Consensus 14 ~~~~v~l~Sll~nn~~~~--~fyil~~~is~e~~~-~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~y~r-L~~~ 89 (248)
T cd06432 14 RFLRIMMLSVMKNTKSPV--KFWFIKNFLSPQFKE-FLPEMAKEYGFEYELVTYKWPRWLHKQTEKQRIIWGYKI-LFLD 89 (248)
T ss_pred HHHHHHHHHHHHcCCCCE--EEEEEeCCCCHHHHH-HHHHHHHHhCCceEEEEecChhhhhcccccchhHHHHHH-HHHH
Confidence 667889999998764344 999999988877666 78888877765566555431 10 10 1122 1122
Q ss_pred -hc--CCCEEEEEcCCCccCCCChHHHHHh
Q psy8674 352 -ES--RGEVIVFLDAHCEVGLNWLPPLLAP 378 (439)
Q Consensus 352 -~a--~~d~i~~ld~D~~~~~~~l~~l~~~ 378 (439)
.- .-+-++.||+|..+. +-|.+|...
T Consensus 90 ~lLP~~vdkvLYLD~Dilv~-~dL~eL~~~ 118 (248)
T cd06432 90 VLFPLNVDKVIFVDADQIVR-TDLKELMDM 118 (248)
T ss_pred HhhhhccCEEEEEcCCceec-ccHHHHHhc
Confidence 22 358999999999876 557777764
No 273
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=76.27 E-value=5.4 Score=34.71 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=43.1
Q ss_pred EEEEEecC--CCChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEe
Q psy8674 17 VRLIRNTE--REGLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMT 73 (439)
Q Consensus 17 i~~i~~~~--n~G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v 73 (439)
++++.... ..|...+.-.|++....++++++++|.- ++++.++.+++.+.+.+..++
T Consensus 63 ~~~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 122 (193)
T PRK00317 63 LPVIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDADVA 122 (193)
T ss_pred CcEEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEE
Confidence 45565432 3677788888888888899999999995 699999999998765444333
No 274
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=76.12 E-value=5.5 Score=34.33 Aligned_cols=57 Identities=7% Similarity=0.087 Sum_probs=44.2
Q ss_pred cEEEEEec--CCCChhHHHHhhhhhccCcEEEEecCCc-ccCCCchHHHHHHHhcCCCeE
Q psy8674 16 KVRLIRNT--EREGLIRTRSRGAKESRGEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIM 72 (439)
Q Consensus 16 ~i~~i~~~--~n~G~a~arN~G~~~A~g~~i~flD~D~-~~~~~~l~~l~~~~~~~~~~~ 72 (439)
.++++..+ ...|.+.+.-.|++.+..++++++++|. .++++.++.+++.+.+.+..+
T Consensus 61 ~~~~i~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 120 (186)
T TIGR02665 61 GLPVVPDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEASDADI 120 (186)
T ss_pred CCcEEecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcE
Confidence 35666643 3478888888899888889999999999 579999999999887544333
No 275
>PLN02400 cellulose synthase
Probab=75.63 E-value=6.5 Score=43.02 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=45.6
Q ss_pred CcEEEEEecCCCCh-----hHHHHhhhhhc----cCcEEEEecCCccc-CCCchHHHHHHHhc
Q psy8674 15 GKVRLIRNTEREGL-----IRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIYS 67 (439)
Q Consensus 15 ~~i~~i~~~~n~G~-----a~arN~G~~~A----~g~~i~flD~D~~~-~~~~l~~l~~~~~~ 67 (439)
|++.+|..+++.|+ |+|.|.-++.+ .++||+-||+|..+ .|..+.+.+-.|..
T Consensus 523 P~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD 585 (1085)
T PLN02400 523 PRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 585 (1085)
T ss_pred ceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheec
Confidence 59999999999885 89999999854 69999999999999 78888888777764
No 276
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=75.49 E-value=38 Score=32.57 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=32.2
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCCh
Q psy8674 268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSK 313 (439)
Q Consensus 268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d 313 (439)
.+.+.|||-++|+. +.|+-.|+||.+.....- .-+|+.-|.-++
T Consensus 30 ~~~~vivvqVH~r~-~yl~~li~sL~~~~~I~~-~llifSHd~~~~ 73 (356)
T PF05060_consen 30 NDSIVIVVQVHNRP-EYLKLLIDSLSQARGIEE-ALLIFSHDFYSE 73 (356)
T ss_pred CCCEEEEEEECCcH-HHHHHHHHHHHHhhCccc-eEEEEeccCChH
Confidence 36799999999999 999999999998765442 234444455443
No 277
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=75.47 E-value=14 Score=33.28 Aligned_cols=105 Identities=17% Similarity=0.067 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC--------------CC-CHHHHHH
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--------------RE-GLIRTRS 347 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~--------------~~-g~~~a~n 347 (439)
..+.-++.|++..+.......|+|++++.+++..+ .+++..........+..... .. ..+-++-
T Consensus 12 ~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl 90 (250)
T PF01501_consen 12 EGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFE-KLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRHFSPATFARL 90 (250)
T ss_dssp HHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHH-HHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTCGGGGGGGGG
T ss_pred HHHHHHHHHHHHhccccccceEEEecCCCCHHHHH-HHhhhcccccceeeeccchHHhhhhhhhcccccccccHHHHHHh
Confidence 66677889999877632334788898887766554 45444333221112222111 00 0112223
Q ss_pred HHHhh-cCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674 348 RGAKE-SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 389 (439)
Q Consensus 348 ~g~~~-a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~ 389 (439)
...+. ...|-+++||+|..+.. -|..+...-..+...+++.
T Consensus 91 ~i~~ll~~~drilyLD~D~lv~~-dl~~lf~~~~~~~~~~a~~ 132 (250)
T PF01501_consen 91 FIPDLLPDYDRILYLDADTLVLG-DLDELFDLDLQGKYLAAVE 132 (250)
T ss_dssp GHHHHSTTSSEEEEE-TTEEESS--SHHHHC---TTSSEEEEE
T ss_pred hhHHHHhhcCeEEEEcCCeeeec-Chhhhhcccchhhhccccc
Confidence 33444 56899999999999854 4666665444444444443
No 278
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=74.85 E-value=52 Score=31.04 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=59.4
Q ss_pred eEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCc----EEEEEcCCCC--CH--
Q psy8674 271 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGK----VRLIRNTERE--GL-- 342 (439)
Q Consensus 271 vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~----v~~i~~~~~~--g~-- 342 (439)
++||+...+ . +.+..+|.|++..+...+ .+.|+.|....+...+.++++....... +..+..+... +.
T Consensus 3 ~~vv~~g~~-~-~~~~~~lkSil~~n~~~l--~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~ 78 (304)
T cd06430 3 LAVVACGER-L-EETLTMLKSAIVFSQKPL--RFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKK 78 (304)
T ss_pred EEEEEcCCc-H-HHHHHHHHHHHHhCCCCE--EEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhh
Confidence 455555555 5 788889999876664444 7777777633343444677775443222 2233322221 11
Q ss_pred -----HHHHHHHHhhc-CCCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674 343 -----IRTRSRGAKES-RGEVIVFLDAHCEVGLNWLPPLLAPIY 380 (439)
Q Consensus 343 -----~~a~n~g~~~a-~~d~i~~ld~D~~~~~~~l~~l~~~~~ 380 (439)
...|-...+.- .-|-++.||+|..+..+ |.+|.+.+.
T Consensus 79 l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~d-I~eL~~~~~ 121 (304)
T cd06430 79 LFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRP-VEEIWSFLK 121 (304)
T ss_pred cccHHHHHHHHHHHHhhhhceEEEeccceeecCC-HHHHHHHHh
Confidence 11122222222 35789999999887544 788877654
No 279
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=74.41 E-value=16 Score=35.61 Aligned_cols=96 Identities=13% Similarity=0.156 Sum_probs=61.9
Q ss_pred CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CC-CCHHHHHHHHHhhcCCC
Q psy8674 279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-ER-EGLIRTRSRGAKESRGE 356 (439)
Q Consensus 279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~-~g~~~a~n~g~~~a~~d 356 (439)
+.. ..|...++.+... . .+|+||-++... .+.... . .+.++... .. .|...+.-.|++....+
T Consensus 30 ~Gk-pll~~~i~~l~~~--~---~~iivvv~~~~~-----~~~~~~---~-~~~~i~d~~~g~~G~~~si~~gl~~~~~~ 94 (366)
T PRK14489 30 GGK-PLIERVVDRLRPQ--F---ARIHLNINRDPA-----RYQDLF---P-GLPVYPDILPGFQGPLSGILAGLEHADSE 94 (366)
T ss_pred CCe-eHHHHHHHHHHhh--C---CEEEEEcCCCHH-----HHHhhc---c-CCcEEecCCCCCCChHHHHHHHHHhcCCC
Confidence 444 6888888887632 1 166664443321 122211 1 23333322 22 57888888899988889
Q ss_pred EEEEEcCCCc-cCCCChHHHHHhhhcCCCEEEEe
Q psy8674 357 VIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVP 389 (439)
Q Consensus 357 ~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 389 (439)
+++++++|.- ++++.++.+++.+...+..+++|
T Consensus 95 ~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 95 YLFVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred cEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 9999999975 68999999999876666556655
No 280
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=74.20 E-value=45 Score=29.34 Aligned_cols=91 Identities=11% Similarity=0.148 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCC---EEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGE---VIV 359 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d---~i~ 359 (439)
..|..+++.+++....+ +|+|.-| +. .+.+.+.++...+.+. .+.-..-......++.....+ +++
T Consensus 25 pLi~~~i~~a~~s~~~d---~IvVaTd---~~----~i~~~~~~~g~~v~~~-~~~~~~~~~r~~~~~~~~~~~~~~~vv 93 (217)
T PF02348_consen 25 PLIEYVIERAKQSKLID---EIVVATD---DE----EIDDIAEEYGAKVIFR-RGSLADDTDRFIEAIKHFLADDEDIVV 93 (217)
T ss_dssp EHHHHHHHHHHHTTTTS---EEEEEES---SH----HHHHHHHHTTSEEEE---TTSSSHHHHHHHHHHHHTCSTTSEEE
T ss_pred cHHHHHHHHHHhCCCCC---eEEEeCC---CH----HHHHHHHHcCCeeEEc-ChhhcCCcccHHHHHHHhhhhHHhhcc
Confidence 68888999888765543 6665532 22 2233444444344333 333333444555566666666 999
Q ss_pred EEcCCCcc-CCCChHHHHHhhhcCCC
Q psy8674 360 FLDAHCEV-GLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 360 ~ld~D~~~-~~~~l~~l~~~~~~~~~ 384 (439)
.+.+|+.+ +|..+.++++.+.+...
T Consensus 94 ~~~~d~Pll~~~~i~~~i~~~~~~~~ 119 (217)
T PF02348_consen 94 RLQGDSPLLDPTSIDRAIEDIREANE 119 (217)
T ss_dssp EESTTETT--HHHHHHHHHHHHHSTT
T ss_pred ccCCeeeECCHHHHHHHHHHHhcCch
Confidence 99999986 79999999999987765
No 281
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=73.98 E-value=43 Score=33.60 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=61.6
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|.-+. ..|..+|+++.+.... +++||-.. .++ .+.++... .+.++..+...|.+.+...++...
T Consensus 24 ll~i~Gk--pli~~~l~~l~~~gi~----~iivvv~~-~~~----~i~~~~~~---~~~~~~~~~~~g~~~al~~a~~~l 89 (458)
T PRK14354 24 LHKVCGK--PMVEHVVDSVKKAGID----KIVTVVGH-GAE----EVKEVLGD---RSEFALQEEQLGTGHAVMQAEEFL 89 (458)
T ss_pred hCEeCCc--cHHHHHHHHHHhCCCC----eEEEEeCC-CHH----HHHHHhcC---CcEEEEcCCCCCHHHHHHHHHHHh
Confidence 3455554 6888899998865322 55555332 222 23333221 355555556678888888887765
Q ss_pred C--CCEEEEEcCCC-ccCCCChHHHHHhhhcCC
Q psy8674 354 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDR 383 (439)
Q Consensus 354 ~--~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~ 383 (439)
. .+.++++++|. .+.+..+..+++......
T Consensus 90 ~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~ 122 (458)
T PRK14354 90 ADKEGTTLVICGDTPLITAETLKNLIDFHEEHK 122 (458)
T ss_pred cccCCeEEEEECCccccCHHHHHHHHHHHHhcC
Confidence 4 47899999998 468888999998876543
No 282
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=73.36 E-value=9.8 Score=34.22 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEe
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMT 73 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v 73 (439)
+.+.+++..+ .++++.++...+.+.+ ..+++....++++++++|+- ++++.++.+++.+...+...+
T Consensus 54 ~~i~~~~~~~--~v~~v~~~~~~~l~~~-~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 54 DPLEALAKKL--GVKVFRGSEEDVLGRY-YQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred HHHHHHHHHc--CCeEEECCchhHHHHH-HHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 3455555554 4778877665444333 23444456799999999997 599999999998876544444
No 283
>KOG4179|consensus
Probab=72.71 E-value=8.1 Score=37.27 Aligned_cols=109 Identities=18% Similarity=0.250 Sum_probs=66.9
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCC---cEEEEEcCCC------
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG---KVRLIRNTER------ 339 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~---~v~~i~~~~~------ 339 (439)
|.|-+.+-++|-. ..+.-.+-.+-+++|+....-|.+-.|.+.|.+++ +++++.+..+. .|++-...+.
T Consensus 3 ptvl~alL~rn~a-h~lp~Flg~le~~Dypk~r~aiw~~~dh~~d~~ie-~freWL~nv~~~y~~V~~e~~~e~~s~~d~ 80 (568)
T KOG4179|consen 3 PTVLCALLFRNFA-HSLPLFLGELEEGDYPKIRPAIWIGVDHEHDHAIE-YFREWLENVGDLYHRVKWEPFIEPKSYPDE 80 (568)
T ss_pred ceeehHHHHHHHH-hhhhhccCChhccCCcccccceEEecCccccchHH-HHHHHHHhcCCccceeEEEecCCccccCcc
Confidence 4455555556665 55555555566788887666778888888888888 99999887542 3333221111
Q ss_pred CC-----------HHHHHHHHHhhcC---CCEEEEEcCCCccC-CCChHHHHHhh
Q psy8674 340 EG-----------LIRTRSRGAKESR---GEVIVFLDAHCEVG-LNWLPPLLAPI 379 (439)
Q Consensus 340 ~g-----------~~~a~n~g~~~a~---~d~i~~ld~D~~~~-~~~l~~l~~~~ 379 (439)
.| .-.-...++..++ .||++|.|.|+.+. ++.|..++...
T Consensus 81 ~~pk~W~~sr~q~lm~lKeea~~~~r~~~adyilf~d~d~lLts~dTl~llm~l~ 135 (568)
T KOG4179|consen 81 HGPKHWPDSRFQHLMSLKEEALNWARSGWADYILFKDEDNLLTSGDTLPLLMNLI 135 (568)
T ss_pred cCCccCchHHHHHHHHHHHHHHHHHHhhhcceeEEeehhheeeCCchHhHHHhcc
Confidence 11 1111222333343 79999999999985 77776665543
No 284
>KOG2733|consensus
Probab=72.60 E-value=35 Score=32.72 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=72.8
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC--CCHHHH
Q psy8674 268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER--EGLIRT 345 (439)
Q Consensus 268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~--~g~~~a 345 (439)
.+.+|+-|...|+ +.|.+.|+-+-+.+.+++..++|+|.|.++..++. ++++. .+++.+.-. .=++.+
T Consensus 31 ~~~~slavAGRn~--~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~----emak~----~~vivN~vGPyR~hGE~ 100 (423)
T KOG2733|consen 31 FEGLSLAVAGRNE--KKLQEVLEKVGEKTGTDLSSSVILIADSANEASLD----EMAKQ----ARVIVNCVGPYRFHGEP 100 (423)
T ss_pred ccCceEEEecCCH--HHHHHHHHHHhhccCCCcccceEEEecCCCHHHHH----HHHhh----hEEEEeccccceecCcH
Confidence 4568889999998 48889999888888776677889999988776544 33332 344433221 223444
Q ss_pred HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhh----cCCC-EEEEeeeeeecCCC
Q psy8674 346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY----SDRK-IMTVPVIDGIDYQT 398 (439)
Q Consensus 346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~----~~~~-~~v~~~~~~~~~~~ 398 (439)
.-.+.-.....++ |..=+|.|++.|..... +... ++-++-.|.|..+-
T Consensus 101 VVkacienG~~~v-----DISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDSIPaDl 153 (423)
T KOG2733|consen 101 VVKACIENGTHHV-----DISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDSIPADL 153 (423)
T ss_pred HHHHHHHcCCcee-----ccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccCCCCccc
Confidence 4444444444443 55567999998875442 2222 44556667776663
No 285
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=72.49 E-value=22 Score=30.40 Aligned_cols=90 Identities=11% Similarity=0.185 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhhc---CCCEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKES---RGEVI 358 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~a---~~d~i 358 (439)
..|+.+++.+.... .+||||-+... . . .. ..++++... ...|...+.-.|++.+ +.+++
T Consensus 16 ~ll~~~~~~l~~~~-----~~iivv~~~~~-~-~--------~~--~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~ 78 (178)
T PRK00576 16 TLVEHVVGIVGQRC-----APVFVMAAPGQ-P-L--------PE--LPAPVLRDELRGLGPLPATGRGLRAAAEAGARLA 78 (178)
T ss_pred CHHHHHHHHHhhcC-----CEEEEECCCCc-c-c--------cc--CCCCEeccCCCCCCcHHHHHHHHHHHHhcCCCEE
Confidence 67888888665321 17777754321 1 1 11 124455322 2356666666666543 57999
Q ss_pred EEEcCCCcc-CCCChHHHHHhhhcCCCEEEEe
Q psy8674 359 VFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVP 389 (439)
Q Consensus 359 ~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~ 389 (439)
+++=+|.-+ +++.+..|+..+......++.+
T Consensus 79 lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~~~ 110 (178)
T PRK00576 79 FVCAVDMPYLTVELIDDLARPAAQTDAEVVLP 110 (178)
T ss_pred EEEeCCCCCCCHHHHHHHHHHhhcCCCcEEEe
Confidence 999999985 7899999998776555444433
No 286
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=72.45 E-value=42 Score=30.01 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=43.0
Q ss_pred HHHHHHHHhcC--CcEEEEE--ecCCCChhHHHHhhhhhccC--cEEEEecCCcccCCCchHHHHHHHhcCCCeEe
Q psy8674 4 KKLEDYIERFN--GKVRLIR--NTEREGLIRTRSRGAKESRG--EVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMT 73 (439)
Q Consensus 4 ~~l~~~~~~~~--~~i~~i~--~~~n~G~a~arN~G~~~A~g--~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v 73 (439)
+.+.+++.+.+ ..+.++. .++..|.+.+.-.+....+. +-++.+++|.....+ +..+++.+.+.+..++
T Consensus 58 ~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~ 132 (233)
T cd06425 58 EDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFP-LAELLDFHKKHGAEGT 132 (233)
T ss_pred HHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHHHcCCCEE
Confidence 34555555321 1344433 34567888888888776643 335666999987766 5888888876655433
No 287
>PLN02195 cellulose synthase A
Probab=72.23 E-value=5.3 Score=43.17 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=35.8
Q ss_pred HHHHHHHHHhh----cCCCEEEEEcCCCccC-CCChHHHHHhhhcCC
Q psy8674 342 LIRTRSRGAKE----SRGEVIVFLDAHCEVG-LNWLPPLLAPIYSDR 383 (439)
Q Consensus 342 ~~~a~n~g~~~----a~~d~i~~ld~D~~~~-~~~l~~l~~~~~~~~ 383 (439)
+++|+|.+++. +++++|+.||+|..+. ++++.+.+-.|.+..
T Consensus 437 KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~ 483 (977)
T PLN02195 437 KAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPV 483 (977)
T ss_pred ccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcc
Confidence 88999999975 4699999999999876 579999999888753
No 288
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=71.64 E-value=17 Score=31.76 Aligned_cols=76 Identities=13% Similarity=0.220 Sum_probs=47.3
Q ss_pred eEEEEeCCCC--hhhHHHHHHHHHHHcCCcEEEEEcCCC-CC----HHHHHHHHHhhcC-CCEEEEEcCCCccCCCChHH
Q psy8674 303 EIILVDDFSS--KADLDQKLEDYIQRFNGKVRLIRNTER-EG----LIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPP 374 (439)
Q Consensus 303 eiivvdd~s~--d~t~~~~~~~~~~~~~~~v~~i~~~~~-~g----~~~a~n~g~~~a~-~d~i~~ld~D~~~~~~~l~~ 374 (439)
.++.|-..+. +....+.+.+-.+.++. +.+...... .+ .-.+++.+.+.+. .+|++.+|+|..+.+.-|..
T Consensus 22 ~~~FvvG~~~~~~~~~~~~l~~E~~~y~D-il~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~~l~~ 100 (195)
T PF01762_consen 22 KVVFVVGESPNSDSDLQEALQEEAEKYGD-ILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPDRLVS 100 (195)
T ss_pred EEEEEEecCCCCcHHHHHHhhhhhhhcCc-eEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehHHhhh
Confidence 5665555554 44455445555555553 444433322 12 2356666667766 89999999999998877777
Q ss_pred HHHhh
Q psy8674 375 LLAPI 379 (439)
Q Consensus 375 l~~~~ 379 (439)
.+...
T Consensus 101 ~L~~~ 105 (195)
T PF01762_consen 101 FLKSL 105 (195)
T ss_pred hhhhc
Confidence 77666
No 289
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=71.01 E-value=22 Score=35.17 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=53.7
Q ss_pred cCcEEEEecCCcccCCCchHHHH---HHHhcCCCeEeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHH
Q psy8674 40 RGEVIVFLDAHCEVGLNWLPPLL---APIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 116 (439)
Q Consensus 40 ~g~~i~flD~D~~~~~~~l~~l~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (439)
+-+.++++-.|..++||+++=+. ..++.++...++... +.......
T Consensus 191 ~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSaw---NdnG~~~~---------------------------- 239 (434)
T PF03071_consen 191 KYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAW---NDNGKEHF---------------------------- 239 (434)
T ss_dssp --SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES-----TT-BGGG----------------------------
T ss_pred CCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEcc---ccCCcccc----------------------------
Confidence 45789999999999999987544 445566665443221 11110000
Q ss_pred HhhccCCCCCccCccccceEEEEeHHHHHHhC-CCCCCCCCccchhhHHHHHH--HHhCCcEEEeccc-ceeccc
Q psy8674 117 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG-GYDPGLLVWGGENFELSFKI--WMCGGSIEWVPCS-RIVSLI 187 (439)
Q Consensus 117 ~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG-gfde~~~~~~~ED~Dl~~Rl--~~~G~~i~~~p~~-~v~H~~ 187 (439)
.........+++.++.|-.+|++|++|+++. .+... -+|-.+|. .+.|-.+. .|++ +.+|..
T Consensus 240 -~~~~~~~~lyRsdffpglGWml~r~~w~el~~~Wp~~-------~WDdwmR~~~~rkgR~cI-rPeisRt~~fg 305 (434)
T PF03071_consen 240 -VDDSRPSLLYRSDFFPGLGWMLTRELWDELEPKWPKA-------FWDDWMRQPEQRKGRQCI-RPEISRTYHFG 305 (434)
T ss_dssp -S-TT-TT-EEEESS---SSEEEEHHHHHHHGGG--SS--------HHHHHTSHHHHTT-EEE-EESSBSEEE--
T ss_pred -ccCCCccceEecccCCchHHHhhHHHHHhhcccCCCC-------CchhhhcCccccCCCcee-eccCCCccccC
Confidence 0000123345666778878999999999876 33332 35667764 34454444 4554 355553
No 290
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=71.01 E-value=12 Score=32.76 Aligned_cols=52 Identities=13% Similarity=0.255 Sum_probs=43.5
Q ss_pred cEEEEEecC-CCChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHHHHHhc
Q psy8674 16 KVRLIRNTE-REGLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYS 67 (439)
Q Consensus 16 ~i~~i~~~~-n~G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~ 67 (439)
+++++.++. ..|...+.-.|++....++++++++|.- ++++.++.+++.+..
T Consensus 67 ~~~~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 67 GCHWLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCeEecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 477776443 3689999999999888999999999997 499999999998764
No 291
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=70.87 E-value=39 Score=30.26 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC--CCEEEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVF 360 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~--~d~i~~ 360 (439)
..|..+|+.+.+....+ +|+||-....-+ .++++... ..++++.... ........|++... .+++++
T Consensus 29 pvl~~tl~~f~~~~~i~---~Ivvv~~~~~~~----~~~~~~~~--~~v~iv~GG~--tR~~SV~ngL~~l~~~~d~VlI 97 (221)
T PF01128_consen 29 PVLEYTLEAFLASPEID---EIVVVVPPEDID----YVEELLSK--KKVKIVEGGA--TRQESVYNGLKALAEDCDIVLI 97 (221)
T ss_dssp EHHHHHHHHHHTTTTES---EEEEEESGGGHH----HHHHHHHH--TTEEEEE--S--SHHHHHHHHHHCHHCTSSEEEE
T ss_pred EeHHHHHHHHhcCCCCC---eEEEEecchhHH----HHHHhhcC--CCEEEecCCh--hHHHHHHHHHHHHHcCCCEEEE
Confidence 68889999987654333 888886554323 44444444 3688885433 34555556777644 469999
Q ss_pred EcCCCc-cCCCChHHHHHhhhc-CCC-EEEEeeeee
Q psy8674 361 LDAHCE-VGLNWLPPLLAPIYS-DRK-IMTVPVIDG 393 (439)
Q Consensus 361 ld~D~~-~~~~~l~~l~~~~~~-~~~-~~v~~~~~~ 393 (439)
-|+=-- ++++.+.++++.+.. ... ..+.|..|.
T Consensus 98 HDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~DT 133 (221)
T PF01128_consen 98 HDAARPFVSPELIDRVIEAAREGHGAAIPALPVTDT 133 (221)
T ss_dssp EETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SSE
T ss_pred EccccCCCCHHHHHHHHHHHHhhcCcEEEEEecccc
Confidence 888765 478999999999987 443 334465544
No 292
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=70.72 E-value=1.9 Score=40.40 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=26.0
Q ss_pred hHHHHhhhhhccCcEEEEecCCcccCCCc
Q psy8674 29 IRTRSRGAKESRGEVIVFLDAHCEVGLNW 57 (439)
Q Consensus 29 a~arN~G~~~A~g~~i~flD~D~~~~~~~ 57 (439)
.+.||.|.-.++-+||+++|.||.+..+|
T Consensus 82 ~a~R~fGyL~s~~~yivsiDDD~~Pa~d~ 110 (346)
T PLN03180 82 SACRCFGYLVSKKKYIFTIDDDCFVAKDP 110 (346)
T ss_pred ccchhhhheeecceEEEEECCCCCCCCCC
Confidence 46899999999999999999999997763
No 293
>PRK10122 GalU regulator GalF; Provisional
Probab=69.75 E-value=85 Score=29.52 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=61.8
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHH-------------------HHHHH--cCCcEE
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE-------------------DYIQR--FNGKVR 332 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~-------------------~~~~~--~~~~v~ 332 (439)
.+|.-+. ..|...|+++.+.... +|+|+-.- ....+.+.+. .+... .+.++.
T Consensus 28 llpi~gk--piI~~~l~~l~~~Gi~----~i~iv~~~-~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~ 100 (297)
T PRK10122 28 MLPIVDK--PMIQYIVDEIVAAGIK----EIVLVTHA-SKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIM 100 (297)
T ss_pred eeEECCE--EHHHHHHHHHHHCCCC----EEEEEcCC-ChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEE
Confidence 5566665 5888888888875432 67777443 2222221221 00011 112466
Q ss_pred EEEcCCCCCHHHHHHHHHhhcC-CCEEEEEcCCCccCCC-------ChHHHHHhhhcCCC
Q psy8674 333 LIRNTEREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLN-------WLPPLLAPIYSDRK 384 (439)
Q Consensus 333 ~i~~~~~~g~~~a~n~g~~~a~-~d~i~~ld~D~~~~~~-------~l~~l~~~~~~~~~ 384 (439)
++..++..|.+.|.-.+..... .++++++ +|..+.++ .+..+++.......
T Consensus 101 ~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~~~~ 159 (297)
T PRK10122 101 NVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred EeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHHhCC
Confidence 6777777999999988888764 4565555 88777543 47888887655443
No 294
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=68.81 E-value=35 Score=31.00 Aligned_cols=133 Identities=16% Similarity=0.145 Sum_probs=65.9
Q ss_pred hHHHHhhhhhc-------cC--cEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCc----ccccccCCCC
Q psy8674 29 IRTRSRGAKES-------RG--EVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTW----EFRSVYEPDH 95 (439)
Q Consensus 29 a~arN~G~~~A-------~g--~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~ 95 (439)
|.-||.+++-- .+ +-|+||| |+.+.+.=+-+++..-.....+++|+ ++......+ ......|..
T Consensus 92 A~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aCa-mDf~~~~~fYD~wv~RD~~G~~- 168 (241)
T PF11735_consen 92 AELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNRGNYDMACA-MDFINPPKFYDTWVLRDIEGDS- 168 (241)
T ss_pred HHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCcccccchhh-cccccCccccceeEEecCCCCc-
Confidence 78999998522 22 5699999 88876554434433333222334433 333222111 111111100
Q ss_pred ccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhC--CCCC--CCCCccchhhHHHHHHHHh
Q psy8674 96 HYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG--GYDP--GLLVWGGENFELSFKIWMC 171 (439)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG--gfde--~~~~~~~ED~Dl~~Rl~~~ 171 (439)
+. ...|..+.............++++....++..++..+.|..-+ .|.- ..+..++|-.-++.-+++.
T Consensus 169 -----~~---~~~~p~f~~~~~~~~~~~~~pv~V~SCWnG~va~~a~pf~~~~~lrFR~~~~~~~~~sEc~Li~~D~~~~ 240 (241)
T PF11735_consen 169 -----FG---SPFWPYFRSASSRDRLRRGDPVPVFSCWNGMVAFDAEPFLPPTPLRFRADSEGECEASECCLIHADLWRW 240 (241)
T ss_pred -----cc---cccCcCcCCHHHHHHHhcCCCeeeecccCCcccccchhhccCCceeecCCCCCceeccchhHhHhhhhhc
Confidence 10 1112222222223334557778877777888888999988765 3432 1222334555555555554
Q ss_pred C
Q psy8674 172 G 172 (439)
Q Consensus 172 G 172 (439)
|
T Consensus 241 g 241 (241)
T PF11735_consen 241 G 241 (241)
T ss_pred C
Confidence 4
No 295
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=68.53 E-value=17 Score=31.35 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=42.8
Q ss_pred cEEEEEecC-CCChhHHHHhhhhhc---cCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEe
Q psy8674 16 KVRLIRNTE-REGLIRTRSRGAKES---RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMT 73 (439)
Q Consensus 16 ~i~~i~~~~-n~G~a~arN~G~~~A---~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v 73 (439)
.+.++.++. ..|.+.+.-.|++.+ ..++++++++|+- ++++.++.+++.+...+..++
T Consensus 67 ~~~~~~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~ 129 (190)
T TIGR03202 67 RIMLVCCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDDYV 129 (190)
T ss_pred CeEEEECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEE
Confidence 355554433 347778888888876 4799999999997 599999999998865544433
No 296
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=68.00 E-value=14 Score=37.08 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc--CcEEEEecCCc-ccCCCchHHHHHHHhcCCCe
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKI 71 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~--g~~i~flD~D~-~~~~~~l~~l~~~~~~~~~~ 71 (439)
+.+.+++.+.. .+.++..++..|.+.+.-.++..-+ .+.++++++|. .+++..++.+++.+.+....
T Consensus 58 ~~i~~~~~~~~-~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~ 127 (459)
T PRK14355 58 EKVREHFAGDG-DVSFALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAA 127 (459)
T ss_pred HHHHHHhccCC-ceEEEecCCCCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCc
Confidence 44555555443 5777766777788888888877654 47899999999 57888899999988765443
No 297
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=67.98 E-value=29 Score=30.76 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=41.2
Q ss_pred HHHHHHHHh--cCCcEEEEEec-CCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHh
Q psy8674 4 KKLEDYIER--FNGKVRLIRNT-EREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY 66 (439)
Q Consensus 4 ~~l~~~~~~--~~~~i~~i~~~-~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~ 66 (439)
+.+.+++.. .+-.|.++..+ +..|.+.|...|+..-..+.++++++|.....++.+ +++.+.
T Consensus 57 ~~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~-~~~~~~ 121 (221)
T cd06422 57 DQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAP-LLLLHA 121 (221)
T ss_pred HHHHHHHhcccCCceEEEecCCCcccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHH-HHHHHH
Confidence 455666654 22234444433 456888888888887666889999999999888655 455444
No 298
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=67.32 E-value=69 Score=28.63 Aligned_cols=72 Identities=10% Similarity=0.130 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCcEEEEEec----CCCChhHHHHhhhhhc----cCcEEEEecCCccc-CCCchHHHHHHHhcCCCeEeee
Q psy8674 5 KLEDYIERFNGKVRLIRNT----EREGLIRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVP 75 (439)
Q Consensus 5 ~l~~~~~~~~~~i~~i~~~----~n~G~a~arN~G~~~A----~g~~i~flD~D~~~-~~~~l~~l~~~~~~~~~~~v~~ 75 (439)
.+.++.+++...+.+.+++ ...|.+.+.-.|++.. +.+.++++++|.-+ .++.++.+++.+.++..+.+.+
T Consensus 51 ~i~~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~s 130 (222)
T TIGR03584 51 EIAEVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFS 130 (222)
T ss_pred HHHHHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4556666665233333322 1345556666666543 36999999999985 8999999999998654444433
Q ss_pred e
Q psy8674 76 V 76 (439)
Q Consensus 76 ~ 76 (439)
.
T Consensus 131 v 131 (222)
T TIGR03584 131 V 131 (222)
T ss_pred e
Confidence 3
No 299
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=66.99 E-value=10 Score=41.40 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=43.7
Q ss_pred CcEEEEEecCCCCh-----hHHHHhhhhhc----cCcEEEEecCCccc-CCCchHHHHHHHh
Q psy8674 15 GKVRLIRNTEREGL-----IRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIY 66 (439)
Q Consensus 15 ~~i~~i~~~~n~G~-----a~arN~G~~~A----~g~~i~flD~D~~~-~~~~l~~l~~~~~ 66 (439)
|.+.+|..+++.|+ |+|.|.-++.+ .++||+-||+|..+ .|..+.+.+-.|.
T Consensus 454 P~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~l 515 (1044)
T PLN02915 454 PRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLM 515 (1044)
T ss_pred ceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeee
Confidence 48999999998884 89999999877 69999999999998 6777777666665
No 300
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=66.40 E-value=12 Score=33.53 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCcEEEEEecC--CCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHH
Q psy8674 4 KKLEDYIERFNGKVRLIRNTE--REGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLL 62 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~--n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~ 62 (439)
+.+.+++++.+ .+.++.++. ..|.+.+...|+... .+.++++++|+.+.++.++.++
T Consensus 56 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~~s~~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 56 EQIEELLKKYP-NIKFVYNPDYAETNNIYSLYLARDFL-DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred HHHHHHHhccC-CeEEEeCcchhhhCcHHHHHHHHHHc-CCCEEEEeCCEecCHHHHHHHH
Confidence 45666666543 688887654 578888888888777 6778889999998876655554
No 301
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=66.04 E-value=16 Score=36.51 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc--CcEEEEecCCc-ccCCCchHHHHHHHhcCCCeE
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIM 72 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~--g~~i~flD~D~-~~~~~~l~~l~~~~~~~~~~~ 72 (439)
+.++++++++. .++++..+...|.+.+.-.|+.... .+.++++++|. .+.+..++.+++.+.+....+
T Consensus 56 ~~i~~~~~~~~-~i~~v~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~ 126 (450)
T PRK14360 56 EEVEQSLAHLP-GLEFVEQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADV 126 (450)
T ss_pred HHHHHHhcccC-CeEEEEeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcE
Confidence 34566666554 6888876666787777666665543 35678899998 468888999999887655443
No 302
>KOG2264|consensus
Probab=65.90 E-value=7.1 Score=39.11 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=72.8
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHH
Q psy8674 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR 348 (439)
Q Consensus 269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~ 348 (439)
..++||+-+|.++ +.|...|+.|-..-|-+ .||||=|...+..-. . .+ -..+..|.+++.++|. -..+-.
T Consensus 649 EQFTvVmLTYERe-~VLm~sLeRL~gLPYLn---KvvVVWNspk~P~dd-l--~W-PdigvPv~viR~~~Ns--LNNRFl 718 (907)
T KOG2264|consen 649 EQFTVVMLTYERE-AVLMGSLERLHGLPYLN---KVVVVWNSPKDPPDD-L--TW-PDIGVPVEVIRVAENS--LNNRFL 718 (907)
T ss_pred ceEEEEEEEehHH-HHHHHHHHHhhCCcccc---eEEEEeCCCCCChhc-c--cC-cCCCCceEEEEccccc--cccccc
Confidence 3599999999999 99999998887665544 799998887665321 1 11 1112368888887763 122223
Q ss_pred HHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674 349 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 388 (439)
Q Consensus 349 g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 388 (439)
-......+-|+-+|+|.-+-.+-|---......+.+-+|+
T Consensus 719 Pwd~IETEAvLS~DDDahLrhdEI~fgFRVWRE~RDRiVG 758 (907)
T KOG2264|consen 719 PWDRIETEAVLSLDDDAHLRHDEIIFGFRVWRENRDRIVG 758 (907)
T ss_pred Cchhhhheeeeecccchhhhhhheeeeeehhhhccccccc
Confidence 3456678999999999877655554444555555554444
No 303
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=65.80 E-value=75 Score=28.92 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=44.3
Q ss_pred HHHHHHHHhc----CCcEEEEEecCCCChhHHHHhhhhhc---cCcEEEEecCCcccCCCchHHHHHHHhcCCCeEe
Q psy8674 4 KKLEDYIERF----NGKVRLIRNTEREGLIRTRSRGAKES---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMT 73 (439)
Q Consensus 4 ~~l~~~~~~~----~~~i~~i~~~~n~G~a~arN~G~~~A---~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v 73 (439)
+.+.+++... ...|.++..++..|.+.|.-.+...- ..+.++++++|....-+ +..+++.+.+....++
T Consensus 59 ~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~d-l~~~~~~h~~~~~~~t 134 (257)
T cd06428 59 SVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFP-LQELLEFHKKHGASGT 134 (257)
T ss_pred HHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCC-HHHHHHHHHHcCCCEE
Confidence 4566666532 23465555456678877765555432 24678889999987655 8888888876655443
No 304
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=65.63 E-value=37 Score=34.10 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=62.1
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
.+|..+. ..|...|+++...... +|++|-... .+ .+++.... .++.++..+...|.+.+.-.++...
T Consensus 27 l~~i~gk--pli~~~i~~l~~~gi~----~i~vv~~~~-~~----~i~~~~~~--~~~~~i~~~~~~Gt~~al~~a~~~l 93 (456)
T PRK09451 27 LHTLAGK--PMVQHVIDAANELGAQ----HVHLVYGHG-GD----LLKQTLAD--EPLNWVLQAEQLGTGHAMQQAAPFF 93 (456)
T ss_pred cceeCCh--hHHHHHHHHHHhcCCC----cEEEEECCC-HH----HHHHhhcc--CCcEEEECCCCCCcHHHHHHHHHhh
Confidence 3455554 5888889888765322 666665432 11 23333322 2567776666678888888888765
Q ss_pred C-CCEEEEEcCCCc-cCCCChHHHHHhhhcC
Q psy8674 354 R-GEVIVFLDAHCE-VGLNWLPPLLAPIYSD 382 (439)
Q Consensus 354 ~-~d~i~~ld~D~~-~~~~~l~~l~~~~~~~ 382 (439)
. .+.++++++|.. +.+..+..+++.....
T Consensus 94 ~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~ 124 (456)
T PRK09451 94 ADDEDILMLYGDVPLISVETLQRLRDAKPQG 124 (456)
T ss_pred ccCCcEEEEeCCcccCCHHHHHHHHHHhhcC
Confidence 3 578999999984 5777888888765433
No 305
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=65.19 E-value=21 Score=32.10 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCcEEEEEe--cCCCChhHHHHhhhhhccCcEEEEecCCc-ccCCCchHHHHHHHhcCC
Q psy8674 4 KKLEDYIERFNGKVRLIRN--TEREGLIRTRSRGAKESRGEVIVFLDAHC-EVGLNWLPPLLAPIYSDR 69 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~--~~n~G~a~arN~G~~~A~g~~i~flD~D~-~~~~~~l~~l~~~~~~~~ 69 (439)
+.+.++++++. ++++.. ....|.+...+ ++.....+.++++++|+ .+++..+..+++.+...+
T Consensus 53 ~~i~~~~~~~~--~~v~~~~~~~~~g~~~~~~-a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (238)
T PRK13368 53 QRIEDAVEAFG--GKVVMTSDDHLSGTDRLAE-VMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDDP 118 (238)
T ss_pred HHHHHHHHHcC--CeEEecCccCCCccHHHHH-HHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCC
Confidence 45666776654 444433 33335443333 44444568999999999 578999999999886554
No 306
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=64.67 E-value=17 Score=32.15 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=38.2
Q ss_pred eEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC-------CC---HHHHHHHHHhhcC-------CCEEEEEcCCC
Q psy8674 303 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-------EG---LIRTRSRGAKESR-------GEVIVFLDAHC 365 (439)
Q Consensus 303 eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~-------~g---~~~a~n~g~~~a~-------~d~i~~ld~D~ 365 (439)
--|||+|++.... .+.++.++.+-..+.+..+.. .. -...+|.|++..+ .-+|.|.|+|.
T Consensus 12 ~WIVVEd~~~~~~---~v~~lL~~sgl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFaDDdN 88 (207)
T PF03360_consen 12 HWIVVEDSEETTP---LVARLLRRSGLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYFADDDN 88 (207)
T ss_dssp EEEEEESSSS--H---HHHHHHHHHTSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE--TTS
T ss_pred EEEEEeCCCCCCH---HHHHHHHHcCCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEECCCCC
Confidence 7899999986433 345555554433444433331 11 1458899987654 45888999998
Q ss_pred ccCCCChHH
Q psy8674 366 EVGLNWLPP 374 (439)
Q Consensus 366 ~~~~~~l~~ 374 (439)
.++...+++
T Consensus 89 tYdl~LF~e 97 (207)
T PF03360_consen 89 TYDLRLFDE 97 (207)
T ss_dssp EE-HHHHHH
T ss_pred eeeHHHHHH
Confidence 887666665
No 307
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=64.61 E-value=1.1e+02 Score=27.79 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=57.2
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEE---------------------
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR--------------------- 332 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~--------------------- 332 (439)
.+|.-+. ..|..+|+++.+... .+|+||-.-. .+...+.+.++.. ....+.
T Consensus 24 llpv~g~--pii~~~l~~l~~~gi----~~i~iv~~~~-~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (254)
T TIGR02623 24 MVEIGGK--PILWHIMKIYSHHGI----NDFIICCGYK-GYVIKEYFANYFL-HMSDVTFHMADNTMEVHHKRVEPWRVT 95 (254)
T ss_pred eeEECCE--EHHHHHHHHHHHCCC----CEEEEEcCCC-HHHHHHHHHhhhh-cccCeeEEecccccccccccCCcccee
Confidence 4555554 477888888876532 2777775432 2222223332211 000122
Q ss_pred EEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 333 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 333 ~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
+....+..|.+.++..+......+.++++++|..+. ..+..+++.......
T Consensus 96 ~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~-~dl~~~~~~h~~~~~ 146 (254)
T TIGR02623 96 LVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVAD-IDIKALIAFHRKHGK 146 (254)
T ss_pred eeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEec-CCHHHHHHHHHHcCC
Confidence 222223467778887777776667778999998654 457777776654433
No 308
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=64.45 E-value=79 Score=27.84 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=36.1
Q ss_pred ChhHHHHhhhhhcc-----CcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeeee
Q psy8674 27 GLIRTRSRGAKESR-----GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPV 76 (439)
Q Consensus 27 G~a~arN~G~~~A~-----g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~ 76 (439)
|...+.-.|++... .+.++++++|+- +++..++.+++.+.......+.+.
T Consensus 79 ~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~ 134 (223)
T cd02513 79 SSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSV 134 (223)
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 55556666665443 389999999997 599999999999876544444444
No 309
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=63.56 E-value=19 Score=32.54 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=43.2
Q ss_pred hHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhh---ccCcEE--EEecCCcccCCCchHHHHHHHh
Q psy8674 3 DKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKE---SRGEVI--VFLDAHCEVGLNWLPPLLAPIY 66 (439)
Q Consensus 3 ~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~---A~g~~i--~flD~D~~~~~~~l~~l~~~~~ 66 (439)
++.|+++++.+| +++++..+... ...+....++. ..++++ .-||+|+.+..++++.+.+...
T Consensus 74 ~~rL~~l~~~~p-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~RLDdDDAl~~dFV~rlr~~a~ 140 (234)
T PF11316_consen 74 RERLRDLLADYP-QFRIVFRPPGP-HRDAMRRAINAARRDGADPVLQFRLDDDDALHRDFVARLRRAAA 140 (234)
T ss_pred HHHHHHHhccCC-CcEEEecCCch-HHHHHHHHHhhhccCCCCEEEEEEECCcchhhHHHHHHHHHHHH
Confidence 467888888887 88888755443 34444444422 234544 3469999999999999999875
No 310
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=62.96 E-value=21 Score=31.01 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=47.2
Q ss_pred HHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc--CcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeee
Q psy8674 6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVP 75 (439)
Q Consensus 6 l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~--g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 75 (439)
+.++...+ .++++.++. .|.+.+...|++.+. ++.++++-+|+- ++++.++.+++.++. ...+++|
T Consensus 57 ~~~~~~~~--~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~-~~~vi~p 125 (195)
T TIGR03552 57 LLEAARNL--GAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE-GDVVIAP 125 (195)
T ss_pred HHHHHHhc--CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc-CCEEEEe
Confidence 34444444 477787544 599999999988654 468999999997 599999999988753 3344433
No 311
>KOG2287|consensus
Probab=61.63 E-value=91 Score=30.14 Aligned_cols=146 Identities=13% Similarity=0.026 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCC-----hhHHHHhhhhhc-cCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREG-----LIRTRSRGAKES-RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 77 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G-----~a~arN~G~~~A-~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 77 (439)
..|.+-.+.+. .|-+.....++- .-...+-|...+ ..+||+-+|+|+.+.++-|-..+............|.+
T Consensus 146 ~~l~~Ea~~yg-DIi~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v 224 (349)
T KOG2287|consen 146 KLLADEARLYG-DIIQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRV 224 (349)
T ss_pred HHHHHHHHHhC-CEEEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEee
Confidence 44555556676 677776666543 234556666544 58999999999999877655555444211122222222
Q ss_pred ecccCCCcccccccCCCCcccc-ccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCC
Q psy8674 78 DGIDYQTWEFRSVYEPDHHYRG-IFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLV 156 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~ 156 (439)
..- ... .+. ...|. ++.. .......-++.+|...++.+++-..+-..-.....
T Consensus 225 ~~~-~~p------------~R~~~~Kwy-------Vp~~------~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~ 278 (349)
T KOG2287|consen 225 IQN-APP------------IRDKTSKWY-------VPES------EYPCSVYPPYASGPGYVISGDAARRLLKASKHLKF 278 (349)
T ss_pred ccc-CCC------------CCCCCCCCc-------cCHH------HCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCc
Confidence 110 000 000 01121 1111 11223344677899999999998887654444444
Q ss_pred ccchhhHHHHHHHHh-CCcEE
Q psy8674 157 WGGENFELSFKIWMC-GGSIE 176 (439)
Q Consensus 157 ~~~ED~Dl~~Rl~~~-G~~i~ 176 (439)
+-.||+=+..-+.+. |.+..
T Consensus 279 ~~iEDV~~g~~l~~~~gi~~~ 299 (349)
T KOG2287|consen 279 FPIEDVFVGGCLAEDLGIKPV 299 (349)
T ss_pred cchHHHHHHHHHHHhcCCCcc
Confidence 446999999999888 76633
No 312
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=61.62 E-value=39 Score=31.13 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=46.1
Q ss_pred CcEEEEEecCCCChhHHHHhhhhhccCc-EEEEecCCcccC-CCchHHHHHHHhcCCCeEe
Q psy8674 15 GKVRLIRNTEREGLIRTRSRGAKESRGE-VIVFLDAHCEVG-LNWLPPLLAPIYSDRKIMT 73 (439)
Q Consensus 15 ~~i~~i~~~~n~G~a~arN~G~~~A~g~-~i~flD~D~~~~-~~~l~~l~~~~~~~~~~~v 73 (439)
.+|.+++-++..|++.|.-.|=....++ |.+.|=+|...+ +..|..|++.+++....++
T Consensus 97 ~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi 157 (291)
T COG1210 97 VTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVI 157 (291)
T ss_pred ceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEE
Confidence 5788999899999999999998888887 555555454443 7899999999998765433
No 313
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=61.21 E-value=1.5e+02 Score=29.21 Aligned_cols=149 Identities=13% Similarity=0.075 Sum_probs=77.9
Q ss_pred hHHHHHHHHhcCCcEEEEEecCCCC-hh----HHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674 3 DKKLEDYIERFNGKVRLIRNTEREG-LI----RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 77 (439)
Q Consensus 3 ~~~l~~~~~~~~~~i~~i~~~~n~G-~a----~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 77 (439)
.+.|++-.+++. .|-++...+++- .. ...-.+.+....+|++-.|+|+.+..+-|-..+......+. +..|.+
T Consensus 195 dr~Le~Ea~~yg-DIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~r-lYiG~m 272 (408)
T PLN03193 195 DRAIEAEDRKHG-DFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLVRHRKKPR-VYIGCM 272 (408)
T ss_pred HHHHHHHHHHhC-CEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHHHhcCCCCC-EEEEec
Confidence 344665666776 676666666542 11 12222444457899999999999986655444433222222 222332
Q ss_pred ecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674 78 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW 157 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~ 157 (439)
.. ... ... .+..|.- +... ..........++..|...++++++...+-.-...+.++
T Consensus 273 ~~---gPv--r~~--------~~~ky~e-------pe~w---~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y 329 (408)
T PLN03193 273 KS---GPV--LSQ--------KGVRYHE-------PEYW---KFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKY 329 (408)
T ss_pred cc---Ccc--ccC--------CCCcCcC-------cccc---cccCccccCCCCCCcceEEehHHHHHHHHhChhhhccc
Confidence 11 000 000 0000100 0000 00001122335678999999999988876445566666
Q ss_pred cchhhHHHHHHHHhCCcEEEe
Q psy8674 158 GGENFELSFKIWMCGGSIEWV 178 (439)
Q Consensus 158 ~~ED~Dl~~Rl~~~G~~i~~~ 178 (439)
..||+-+..=| .|..+.+.
T Consensus 330 ~~EDV~vG~Wl--~~L~V~~v 348 (408)
T PLN03193 330 ANEDVSLGSWF--IGLDVEHI 348 (408)
T ss_pred CcchhhhhhHh--ccCCceee
Confidence 78999998766 45443333
No 314
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=60.34 E-value=76 Score=29.38 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=48.4
Q ss_pred EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEE--eCCCChhhHHHHHHHHH--HHcCCcEEEEEcCCCCCH-----
Q psy8674 272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILV--DDFSSKADLDQKLEDYI--QRFNGKVRLIRNTEREGL----- 342 (439)
Q Consensus 272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivv--dd~s~d~t~~~~~~~~~--~~~~~~v~~i~~~~~~g~----- 342 (439)
-|||++.+........+|..|.. ....+++||+.- +|-+ ....+ .+.... ...+ ++-+..++-.+.
T Consensus 3 GIVi~~g~~~~~~a~~lI~~LR~-~g~~LPIEI~~~~~~dl~-~~~~~-~l~~~q~v~~vd--~~~~~~~~~~~~~~~~~ 77 (271)
T PF11051_consen 3 GIVITAGDKYLWLALRLIRVLRR-LGNTLPIEIIYPGDDDLS-KEFCE-KLLPDQDVWFVD--ASCVIDPDYLGKSFSKK 77 (271)
T ss_pred EEEEEecCccHHHHHHHHHHHHH-hCCCCCEEEEeCCccccC-HHHHH-HHhhhhhhheec--ceEEeeccccccccccC
Confidence 37888888653444567777766 334456698877 3332 23333 222200 0112 222212222211
Q ss_pred H-HHHHHHHhhcCCCEEEEEcCCCccCCC
Q psy8674 343 I-RTRSRGAKESRGEVIVFLDAHCEVGLN 370 (439)
Q Consensus 343 ~-~a~n~g~~~a~~d~i~~ld~D~~~~~~ 370 (439)
+ ...-.|+-.++-+=+++||+|..+-.+
T Consensus 78 ~~~~K~lA~l~ssFeevllLDaD~vpl~~ 106 (271)
T PF11051_consen 78 GFQNKWLALLFSSFEEVLLLDADNVPLVD 106 (271)
T ss_pred CchhhhhhhhhCCcceEEEEcCCcccccC
Confidence 1 122234446778889999999987543
No 315
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=59.29 E-value=58 Score=32.91 Aligned_cols=95 Identities=7% Similarity=0.046 Sum_probs=53.8
Q ss_pred EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCC-cEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
+|..+.. ..|..+|+.+...... +++||-+.. . .. .+.+....++. ...++..+...|.+.|.-.+....
T Consensus 27 l~l~g~~-~ll~~tl~~l~~~~~~----~iviv~~~~-~--~~-~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~aa~~~ 97 (468)
T TIGR01479 27 LALVGDL-TMLQQTLKRLAGLPCS----SPLVICNEE-H--RF-IVAEQLREIGKLASNIILEPVGRNTAPAIALAALLA 97 (468)
T ss_pred eEcCCCC-cHHHHHHHHHhcCCCc----CcEEecCHH-H--HH-HHHHHHHHcCCCcceEEecccccCchHHHHHHHHHH
Confidence 4554555 7899999988765422 666664322 1 11 33333344321 234555566666665554444332
Q ss_pred -----CCCEEEEEcCCCccC-CCChHHHHHh
Q psy8674 354 -----RGEVIVFLDAHCEVG-LNWLPPLLAP 378 (439)
Q Consensus 354 -----~~d~i~~ld~D~~~~-~~~l~~l~~~ 378 (439)
..++++++.+|..+. +..+.++++.
T Consensus 98 ~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~ 128 (468)
T TIGR01479 98 ARRNGEDPLLLVLAADHVITDEDAFQAAVKL 128 (468)
T ss_pred HHHHCCCcEEEEecCceeecCHHHHHHHHHH
Confidence 246899999997765 3556666654
No 316
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=59.28 E-value=24 Score=35.29 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhc--cCcEEEEecCCc-ccCCCchHHHHHHHhc
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKES--RGEVIVFLDAHC-EVGLNWLPPLLAPIYS 67 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A--~g~~i~flD~D~-~~~~~~l~~l~~~~~~ 67 (439)
+.+.+++.++...+.++...+..|.+.+.-.++... ..+.++++++|. .+++..++.+++.++.
T Consensus 60 ~~i~~~~~~~~~~~~~~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~ 126 (446)
T PRK14353 60 EAVAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERLAD 126 (446)
T ss_pred HHHHHHhhccCCCceEEEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhc
Confidence 456666655432455555456677777666666554 246788899999 6789999999986654
No 317
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=58.46 E-value=48 Score=26.50 Aligned_cols=81 Identities=9% Similarity=0.134 Sum_probs=46.7
Q ss_pred eEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc--CCCEEEEEcCCCc-cCCCChHHHHHhh
Q psy8674 303 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES--RGEVIVFLDAHCE-VGLNWLPPLLAPI 379 (439)
Q Consensus 303 eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a--~~d~i~~ld~D~~-~~~~~l~~l~~~~ 379 (439)
+++|.-++..+.... ..... +..+.++.. ...+++.-++.+++.+ ..+-++++-+|+- ++++.|.+..+.+
T Consensus 12 ~~~l~~~~~~~~~~~---~~~~~--~~~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~~~L 85 (122)
T PF09837_consen 12 DVVLAYTPDGDHAAF---RQLWL--PSGFSFFPQ-QGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAFEAL 85 (122)
T ss_dssp EEEEEE----TTHHH---HHHHH---TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHHHT
T ss_pred CEEEEEcCCccHHHH---hcccc--CCCCEEeec-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHh
Confidence 677777776654322 22111 224666643 4456788888888776 4679999999998 5888899998888
Q ss_pred hcCCCEEEEee
Q psy8674 380 YSDRKIMTVPV 390 (439)
Q Consensus 380 ~~~~~~~v~~~ 390 (439)
... ..+++|.
T Consensus 86 ~~~-d~VlgPa 95 (122)
T PF09837_consen 86 QRH-DVVLGPA 95 (122)
T ss_dssp TT--SEEEEEB
T ss_pred ccC-CEEEeec
Confidence 776 5566665
No 318
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=58.07 E-value=18 Score=31.65 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=46.7
Q ss_pred EEEEEecCCC-ChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeE
Q psy8674 17 VRLIRNTERE-GLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIM 72 (439)
Q Consensus 17 i~~i~~~~n~-G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~ 72 (439)
+.++.-.... |.-++.=.|++.+.+++++|+=+|+- ++++.++.+.+...+++..+
T Consensus 62 ~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~ 119 (192)
T COG0746 62 LPVVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTGAAI 119 (192)
T ss_pred CceeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccCCcE
Confidence 5666655555 99999999999999999999999997 58999999999888766333
No 319
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=57.70 E-value=1.6e+02 Score=30.89 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCCh-----hHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcC--CCeEeeee
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGL-----IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD--RKIMTVPV 76 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~-----a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~--~~~~v~~~ 76 (439)
+.|++-.+.|. .|-+......+.- -.+.-.+....+.+||+..|+|+.+..+- +++.+... ......+.
T Consensus 435 ~~L~~Ea~~yg-DIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~---Ll~~L~~~~~~~~Ly~G~ 510 (636)
T PLN03133 435 EELWNEARTYG-DIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDE---VLASLKRTNVSHGLLYGL 510 (636)
T ss_pred HHHHHHHHHcC-CeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHH---HHHHHHhcCCCCceEEEE
Confidence 44555556676 5655555543321 11222334445789999999999997554 44444321 11222222
Q ss_pred eecccCCCcccccccCCCCcccc-ccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCC-C-CCC
Q psy8674 77 IDGIDYQTWEFRSVYEPDHHYRG-IFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGG-Y-DPG 153 (439)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGg-f-de~ 153 (439)
+.. .. ...+. .-.|.. +..+ ......-++..|+..++++++...+-- . ...
T Consensus 511 v~~---~~----------~PiRd~~sKWYV-------s~~e------yp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~ 564 (636)
T PLN03133 511 INS---DS----------QPHRNPDSKWYI-------SPEE------WPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGR 564 (636)
T ss_pred ecc---CC----------CcccCCCCCCCC-------CHHH------CCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcc
Confidence 211 00 00000 112221 1110 112233467789999999999988732 1 113
Q ss_pred CCCccchhhHHHHHHHH
Q psy8674 154 LLVWGGENFELSFKIWM 170 (439)
Q Consensus 154 ~~~~~~ED~Dl~~Rl~~ 170 (439)
..++..||+-+.+-+..
T Consensus 565 l~~f~lEDVyvGi~l~~ 581 (636)
T PLN03133 565 LKMFKLEDVAMGIWIAE 581 (636)
T ss_pred cCcCChhhHhHHHHHHH
Confidence 33445699999887653
No 320
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=57.25 E-value=1.7e+02 Score=27.52 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=59.4
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHH---H------------HH----cC--CcEE
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDY---I------------QR----FN--GKVR 332 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~---~------------~~----~~--~~v~ 332 (439)
.+|+.+. ..|..+|+++.+.... +|+||-+-..+ ...+.+... . .+ .+ ..+.
T Consensus 33 l~pv~g~--pii~~~l~~l~~~gi~----~i~vv~~~~~~-~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~~~i~ 105 (302)
T PRK13389 33 MLPLVDK--PLIQYVVNECIAAGIT----EIVLVTHSSKN-SIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIM 105 (302)
T ss_pred eeEECCE--EHHHHHHHHHHHCCCC----EEEEEeCCCHH-HHHHHHccchhhhhhhhhhhhhHHHHhhhhccccCceEE
Confidence 5566665 5888889988875322 67666554332 222233210 0 00 01 1233
Q ss_pred EEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccC-------CCChHHHHHhhhcCC
Q psy8674 333 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVG-------LNWLPPLLAPIYSDR 383 (439)
Q Consensus 333 ~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~-------~~~l~~l~~~~~~~~ 383 (439)
.+......|.+.|.-.+......+-++++.+|..+. ...+..+++......
T Consensus 106 ~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~ 163 (302)
T PRK13389 106 QVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETG 163 (302)
T ss_pred EeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcC
Confidence 444455678888888777665445567778888763 367888888765433
No 321
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=56.87 E-value=1e+02 Score=27.61 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=63.3
Q ss_pred CceEEEEEecCCC-------------hhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8674 269 PKASVILVFHNEG-------------FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIR 335 (439)
Q Consensus 269 p~vsiiip~~n~~-------------~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~ 335 (439)
+++.||||+.=.. ...+.++.+...+.. ..+|+|.-| |+. +.+..+.++..+..-.
T Consensus 2 ~~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s~----~~rvvVATD---de~----I~~av~~~G~~avmT~ 70 (247)
T COG1212 2 MKFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKSG----ADRVVVATD---DER----IAEAVQAFGGEAVMTS 70 (247)
T ss_pred CceEEEEecchhcccCCCCchhhhCCchHHHHHHHHHHHcC----CCeEEEEcC---CHH----HHHHHHHhCCEEEecC
Confidence 3567777775222 144555555544432 226666633 222 2233444443343333
Q ss_pred cCCCCCHHHHHHHHHhhc--CCCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEeee
Q psy8674 336 NTEREGLIRTRSRGAKES--RGEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 336 ~~~~~g~~~a~n~g~~~a--~~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
...+.|.-...-..-+.. ..++|+-+-+|.-+ +|.-|..+++.++.....++.+..
T Consensus 71 ~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 71 KDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAV 129 (247)
T ss_pred CCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeee
Confidence 334455444333333332 45799999999885 799999999999988766666544
No 322
>PLN02248 cellulose synthase-like protein
Probab=56.59 E-value=17 Score=40.10 Aligned_cols=40 Identities=13% Similarity=-0.011 Sum_probs=34.8
Q ss_pred HHHHHHHHHh----hcCCCEEEEEcCCCccC-CCChHHHHHhhhc
Q psy8674 342 LIRTRSRGAK----ESRGEVIVFLDAHCEVG-LNWLPPLLAPIYS 381 (439)
Q Consensus 342 ~~~a~n~g~~----~a~~d~i~~ld~D~~~~-~~~l~~l~~~~~~ 381 (439)
+++|+|+-++ .++++||+.||.|..+. +..+.+.+-.|.+
T Consensus 603 KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 603 KAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred ccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 8899998887 56799999999999975 6699999988887
No 323
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=56.46 E-value=67 Score=31.01 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=56.6
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC------CcEEEEEc-------CCCC
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN------GKVRLIRN-------TERE 340 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~------~~v~~i~~-------~~~~ 340 (439)
.+|..+.. ..|...|+++.+.... ||+||-.-..+. ..+.+. +.+. ..++++.. +...
T Consensus 23 llpv~g~~-pli~~~l~~l~~~gi~----~i~iv~~~~~~~-i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (361)
T TIGR02091 23 AVPFGGKY-RIIDFPLSNCINSGIR----RIGVLTQYKSHS-LNRHIQ---RGWDFDGFIDGFVTLLPAQQRESGTDWYQ 93 (361)
T ss_pred cceeccee-eEeeehhhhhhhcCCc----eEEEEeccChHH-HHHHHH---hccCccCccCCCEEEeCCcccCCCCcccc
Confidence 45555653 3666777777764322 677775543332 222332 1111 12343211 1126
Q ss_pred CHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 341 GLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 341 g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
|.+.+.-.++.... .+.++++.+|..++. .+..+++.....+.
T Consensus 94 Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~-~l~~~l~~~~~~~~ 139 (361)
T TIGR02091 94 GTADAVYQNLDLIEDYDPEYVLILSGDHIYKM-DYEKMLDYHIESGA 139 (361)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEecCCEEEcC-CHHHHHHHHHHcCC
Confidence 77778777777654 578999999987655 47777776654443
No 324
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=56.34 E-value=73 Score=31.02 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=57.1
Q ss_pred CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHHHHHHHHhhcCCCE
Q psy8674 279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKESRGEV 357 (439)
Q Consensus 279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~a~n~g~~~a~~d~ 357 (439)
+.. ..|..+++.+.... . +|+|+-+.+.. . ... .. .+.++.... ..|...+...|++.+..+.
T Consensus 198 ~Gk-~ll~~~l~~l~~~~---~--~vvV~~~~~~~---~-~~~----~~--~v~~i~d~~~~~Gpl~gi~~al~~~~~~~ 261 (369)
T PRK14490 198 HES-NQLVHTAALLRPHC---Q--EVFISCRAEQA---E-QYR----SF--GIPLITDSYLDIGPLGGLLSAQRHHPDAA 261 (369)
T ss_pred CCc-cHHHHHHHHHHhhC---C--EEEEEeCCchh---h-HHh----hc--CCcEEeCCCCCCCcHHHHHHHHHhCCCCc
Confidence 445 68888888886431 1 67776544321 1 111 11 456665443 4677788888888888888
Q ss_pred EEEEcCCCcc-CCCChHHHHHhh
Q psy8674 358 IVFLDAHCEV-GLNWLPPLLAPI 379 (439)
Q Consensus 358 i~~ld~D~~~-~~~~l~~l~~~~ 379 (439)
++++=+|.-+ +++.++.|+...
T Consensus 262 ~lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 262 WLVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred EEEEeCCcCCCCHHHHHHHHHhc
Confidence 9999999885 788999998875
No 325
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=56.25 E-value=1.5e+02 Score=28.13 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=55.1
Q ss_pred cccccccccCCCCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH---HcCCcE
Q psy8674 255 RMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKV 331 (439)
Q Consensus 255 ~~~~~~~~~~~~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~v 331 (439)
|-++.++..+|.+. +...... ..|..++..+....... +++||-|.- ...-..+++.+ .....
T Consensus 14 RLWPLSR~~~PKQF------l~L~~~~-Sllq~T~~R~~~l~~~~---~~~vVtne~---~~f~v~eql~e~~~~~~~~- 79 (333)
T COG0836 14 RLWPLSRKDYPKQF------LKLFGDL-SLLQQTVKRLAFLGDIE---EPLVVTNEK---YRFIVKEQLPEIDIENAAG- 79 (333)
T ss_pred ccCCcCcccCCccc------eeeCCCC-cHHHHHHHHHhhcCCcc---CeEEEeCHH---HHHHHHHHHhhhhhccccc-
Confidence 44444444454442 2333345 78899998887633322 788885532 22212233322 21112
Q ss_pred EEEEcCCCCCHHHHHHHHHhhcC---C-CEEEEEcCCCccCC
Q psy8674 332 RLIRNTEREGLIRTRSRGAKESR---G-EVIVFLDAHCEVGL 369 (439)
Q Consensus 332 ~~i~~~~~~g~~~a~n~g~~~a~---~-d~i~~ld~D~~~~~ 369 (439)
++-.+..+.-+.|.-.|+..+. + ..++++-+|..+..
T Consensus 80 -illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d 120 (333)
T COG0836 80 -IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIAD 120 (333)
T ss_pred -eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceecc
Confidence 4545666666667666665543 2 37899999988854
No 326
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=56.22 E-value=51 Score=33.43 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc---CcEEEEecCCc-ccCCCchHHHHHHHhcCCCe
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR---GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKI 71 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~---g~~i~flD~D~-~~~~~~l~~l~~~~~~~~~~ 71 (439)
+.+.++++.....+.++..++..|.+.+.=.|+.... .+.++++++|. .+.+..++.+++.+.+....
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~ 130 (482)
T PRK14352 59 ERVAPAVAELAPEVDIAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNA 130 (482)
T ss_pred HHHHHHhhccCCccEEEeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 3455555544334666665666787777777776543 36789999999 56888899999988765544
No 327
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=55.87 E-value=1.8e+02 Score=27.28 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=45.0
Q ss_pred HHHHHHHHh---cCCcEEEEEecCCCChhHHHHhhhhhccC-cEEEEecCCcccCCCchHHHHHHHhcCCCe
Q psy8674 4 KKLEDYIER---FNGKVRLIRNTEREGLIRTRSRGAKESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 71 (439)
Q Consensus 4 ~~l~~~~~~---~~~~i~~i~~~~n~G~a~arN~G~~~A~g-~~i~flD~D~~~~~~~l~~l~~~~~~~~~~ 71 (439)
+.+++++.. +..+++++..++..|.+.|.-.|...-.+ ++++ +.+|..+...-+..+++.+.+...+
T Consensus 62 ~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~~~~~~l-v~gD~i~~~~~l~~ll~~~~~~~~~ 132 (292)
T PRK15480 62 PRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCAL-VLGDNIFYGHDLPKLMEAAVNKESG 132 (292)
T ss_pred HHHHHHHcCccccCceeEEEECCCCCCHHHHHHHHHHHhCCCCEEE-EECCeeeeccCHHHHHHHHHhCCCC
Confidence 345666543 23467888878889999999888877654 5555 5577766555578888877554433
No 328
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=54.32 E-value=81 Score=27.80 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=44.3
Q ss_pred HHHHHHHHhcC------CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEee
Q psy8674 4 KKLEDYIERFN------GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 74 (439)
Q Consensus 4 ~~l~~~~~~~~------~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~ 74 (439)
+.+++++++++ ..+.++...+..|.+.+.-.+...-.++ ++++.+|.+. +.-+..+++.+.+.+..+++
T Consensus 59 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~d-~lv~~~D~i~-~~~l~~~l~~h~~~~~~~t~ 133 (214)
T cd04198 59 AEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKIKKD-FLVLSCDLIT-DLPLIELVDLHRSHDASLTV 133 (214)
T ss_pred HHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHHhhcCCC-EEEEeCcccc-ccCHHHHHHHHhccCCcEEE
Confidence 45677776541 1233443456778888888887765555 7788999654 44577888877765555443
No 329
>KOG2571|consensus
Probab=54.04 E-value=13 Score=39.90 Aligned_cols=40 Identities=18% Similarity=0.052 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeee
Q psy8674 355 GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGI 394 (439)
Q Consensus 355 ~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~ 394 (439)
-++|+++|+|+.+.|+.+-.|++.|+.++. +.+|+.|-..
T Consensus 441 v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~I~~~ 481 (862)
T KOG2571|consen 441 VDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGRILNK 481 (862)
T ss_pred ceEEEEecCCCccCcHHHHHHHHHhccCcccceeccccccC
Confidence 358899999999999999999999996665 7777755433
No 330
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=53.14 E-value=36 Score=33.16 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=40.4
Q ss_pred CChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeee
Q psy8674 26 EGLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVP 75 (439)
Q Consensus 26 ~G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 75 (439)
.|...+.-.|++....++++++++|+- ++++.++.+++.+......++.+
T Consensus 78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 78 QGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred CChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 578888888998888899999999985 69999999999876555555543
No 331
>KOG4179|consensus
Probab=53.06 E-value=2.3e+02 Score=27.77 Aligned_cols=98 Identities=8% Similarity=0.042 Sum_probs=53.5
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-----------CCCC
Q psy8674 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-----------EREG 341 (439)
Q Consensus 273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-----------~~~g 341 (439)
|.+....+-++...+.+.++-.+... ++++=.-||-.-+|.. ++.+ ++.++..- ...|
T Consensus 294 IfmInLkRR~eRreRM~r~fde~gIe---~~~veAvDgk~lnt~~--~~~l------gv~~LpGY~DPys~Rplt~GEiG 362 (568)
T KOG4179|consen 294 IFMINLKRRPERRERMLRIFDELGIE---YSLVEAVDGKKLNTSQ--LEAL------GVQMLPGYRDPYSGRPLTKGEIG 362 (568)
T ss_pred EEEEecccChHHHHHHHHHHHHhcce---EEEEecccccccchhH--HHhc------CceecCCccCcccCCcccCccee
Confidence 44444443337888888877766532 2666666676555533 2221 23333210 1112
Q ss_pred -HHHHHHHHHhhc--CCCEEEEEcCCCccCCCChHHHHHhhhc
Q psy8674 342 -LIRTRSRGAKES--RGEVIVFLDAHCEVGLNWLPPLLAPIYS 381 (439)
Q Consensus 342 -~~~a~n~g~~~a--~~d~i~~ld~D~~~~~~~l~~l~~~~~~ 381 (439)
+-.-.|.=.... .-+=++++.+|..+.+++..++++.+++
T Consensus 363 CFLSHY~iW~evV~r~l~kvlvfEDD~RFe~~f~~rl~~lm~d 405 (568)
T KOG4179|consen 363 CFLSHYNIWKEVVDRGLEKVLVFEDDLRFEHDFRTRLMRLMQD 405 (568)
T ss_pred eehhHHHHHHHHHHhccceEEEecccccccHHHHHHHHHHHHH
Confidence 111222211211 2456888899999999999998888865
No 332
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=53.04 E-value=35 Score=34.10 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc-CcEEEEecCCc-ccCCCchHHHHHHHhcC
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR-GEVIVFLDAHC-EVGLNWLPPLLAPIYSD 68 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~-g~~i~flD~D~-~~~~~~l~~l~~~~~~~ 68 (439)
+.+++++.++ .++++..++..|.+.+.-.++...+ .+.++++++|+ .+++..++.+++.+.+.
T Consensus 55 ~~i~~~~~~~--~i~~~~~~~~~G~~~ai~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~ 119 (451)
T TIGR01173 55 EQVRKALANR--DVNWVLQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN 119 (451)
T ss_pred HHHHHHhcCC--CcEEEEcCCCCchHHHHHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC
Confidence 4456666555 3677765666788777777777664 47899999998 56888899998887654
No 333
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=52.64 E-value=95 Score=27.70 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=63.6
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 353 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a 353 (439)
+.|.-.+ ..|..+|+.+......+ +|||. -|++++-. .++.++... .+.+++.++. ..-.-.-.+++.-
T Consensus 22 LlpL~~~--pmI~~~lervrks~~~d---~ivvA--TS~~~~d~-~l~~~~~~~--G~~vfrGs~~-dVL~Rf~~a~~a~ 90 (241)
T COG1861 22 LLPLGGE--PMIEYQLERVRKSKDLD---KIVVA--TSDKEEDD-ALEEVCRSH--GFYVFRGSEE-DVLQRFIIAIKAY 90 (241)
T ss_pred hhhcCCC--chHHHHHHHHhcccccc---ceEEE--ecCCcchh-HHHHHHHHc--CeeEecCCHH-HHHHHHHHHHHhc
Confidence 4444444 58899999998766543 56555 23333323 777777664 4777754322 1223333456667
Q ss_pred CCCEEEEEcCCCcc-CCCChHHHHHhhhcCC
Q psy8674 354 RGEVIVFLDAHCEV-GLNWLPPLLAPIYSDR 383 (439)
Q Consensus 354 ~~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~ 383 (439)
.++.|+-+-+|+-+ +|+.+..++....+.+
T Consensus 91 ~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~g 121 (241)
T COG1861 91 SADVVVRVTGDNPFLDPELVDAAVDRHLEKG 121 (241)
T ss_pred CCCeEEEeeCCCCCCCHHHHHHHHHHHHhcC
Confidence 78999999999996 6999988887655433
No 334
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=52.58 E-value=1.6e+02 Score=25.76 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=41.2
Q ss_pred HHHHHHHHh---cCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEe
Q psy8674 4 KKLEDYIER---FNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMT 73 (439)
Q Consensus 4 ~~l~~~~~~---~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v 73 (439)
+.+.+++.+ ....+.++..+...|.+.+.-.+. ....+.++++++|.... ..+..+++.+......++
T Consensus 56 ~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~-~~~~~~~lv~~~D~i~~-~~~~~l~~~~~~~~~~~~ 126 (220)
T cd06426 56 EMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLP-EKPTDPFLVMNGDILTN-LNYEHLLDFHKENNADAT 126 (220)
T ss_pred HHHHHHHCCccccCccEEEEECCCCCcchHHHHHHH-hhCCCCEEEEcCCEeec-cCHHHHHHHHHhcCCCEE
Confidence 345555543 222466666555678777764333 33467788889997654 457788888776544433
No 335
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=52.24 E-value=50 Score=33.49 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc--CcEEEEecCCc-ccCCCchHHHHHHHhcCCCeE
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIM 72 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~--g~~i~flD~D~-~~~~~~l~~l~~~~~~~~~~~ 72 (439)
+.++++++.. .++++..+...|.+.+.-.|+...+ .+-++++++|. .+.+..++.+++.+.+....+
T Consensus 62 ~~i~~~~~~~--~i~~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ 131 (481)
T PRK14358 62 EQVEAALQGS--GVAFARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAM 131 (481)
T ss_pred HHHHHHhccC--CcEEecCCCcCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeE
Confidence 4566666543 4888887777788888777776543 22366799999 568888999998887665544
No 336
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=52.14 E-value=81 Score=29.19 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc----CcEEEEecCCcccC
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR----GEVIVFLDAHCEVG 54 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~----g~~i~flD~D~~~~ 54 (439)
+.++++++...+.++++..+...|.++|.-.++.... .++++++.+|..+.
T Consensus 62 ~~v~~~l~~~~~~~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~ 116 (274)
T cd02509 62 FLVREQLPEGLPEENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIE 116 (274)
T ss_pred HHHHHHHhhcCCCceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhccc
Confidence 3455555542236888877777888888877776543 57999999998875
No 337
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=51.68 E-value=72 Score=28.63 Aligned_cols=67 Identities=9% Similarity=0.111 Sum_probs=43.2
Q ss_pred HHHHHHHHh---cCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674 4 KKLEDYIER---FNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 70 (439)
Q Consensus 4 ~~l~~~~~~---~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~ 70 (439)
+.+.+++.. +.-.|.++..++..|.+.|.-.+......+-++++.+|+.+.+.-+..+++.+.+...
T Consensus 59 ~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~ 128 (240)
T cd02538 59 PLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQKE 128 (240)
T ss_pred HHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcCC
Confidence 345556543 2224555554556788888888877666666677789987766557778877654333
No 338
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=51.20 E-value=66 Score=30.50 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhc
Q psy8674 344 RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 381 (439)
Q Consensus 344 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~ 381 (439)
.+-..|++.|+.+|++-+=+|..+..+-+-++.+....
T Consensus 85 ~St~aGL~~~~~~Ya~KlRtD~~l~~~~~l~~~~~~~~ 122 (311)
T PF07507_consen 85 VSTLAGLKAAKTKYAMKLRTDNRLTGNNFLDLYEKYPD 122 (311)
T ss_pred HHHHHHHHHhCCceEEEEcccccccchHHHHHHHHhcc
Confidence 45556999999999999999999976666666655544
No 339
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=51.06 E-value=2.3e+02 Score=27.99 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCcEEEEEecCC--CChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHH
Q psy8674 4 KKLEDYIERFNGKVRLIRNTER--EGLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLL 62 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n--~G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~ 62 (439)
+.+++++++..+.++++..++. .|.+.|... + ....+.++++++|.. +.+..++.+.
T Consensus 56 ~~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~-~-~~~~d~vlv~~gD~p~~~~~~l~~l~ 115 (430)
T PRK14359 56 ERIKEAVLEYFPGVIFHTQDLENYPGTGGALMG-I-EPKHERVLILNGDMPLVEKDELEKLL 115 (430)
T ss_pred HHHHHHHHhcCCceEEEEecCccCCCcHHHHhh-c-ccCCCeEEEEECCccCCCHHHHHHHH
Confidence 4566677654336888864432 465555433 2 224688999999994 4666666554
No 340
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=50.83 E-value=34 Score=34.35 Aligned_cols=61 Identities=7% Similarity=0.011 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhc---cCcEEEEecCCc-ccCCCchHHHHHHHh
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKES---RGEVIVFLDAHC-EVGLNWLPPLLAPIY 66 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A---~g~~i~flD~D~-~~~~~~l~~l~~~~~ 66 (439)
+.+++++... .++++.++...|.+.+.-.++... ..++++++++|. .+++..++.+++...
T Consensus 60 ~~i~~~~~~~--~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 60 DMVRAAFPDE--DARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred HHHHHhcccc--CceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 3444444332 477777676678777776665544 358999999999 578888999998765
No 341
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=49.15 E-value=1.6e+02 Score=29.25 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=59.0
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC-------CcEEEEE-------cCCC
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-------GKVRLIR-------NTER 339 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-------~~v~~i~-------~~~~ 339 (439)
.+|.-+.. ..|...|+++.+.... +|+|+-+...+ .+.+.+. +.+. ..+.++. .+..
T Consensus 40 llpv~gkp-~lI~~~l~~l~~~Gi~----~i~vv~~~~~~-~i~~~~~---~~~~~~~~~~~~~i~i~~~~~~~~~e~~~ 110 (425)
T PRK00725 40 AVYFGGKF-RIIDFALSNCINSGIR----RIGVLTQYKAH-SLIRHIQ---RGWSFFREELGEFVDLLPAQQRVDEENWY 110 (425)
T ss_pred eEEECCEE-EEhHHHHHHHHHCCCC----eEEEEecCCHH-HHHHHHH---hhhcccccCCCCeEEEeCCcccCCCCccc
Confidence 56777765 5788888888775432 67777654332 2222222 1111 0122221 1123
Q ss_pred CCHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 340 EGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 340 ~g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
.|.+.|.-.+..... .+.++++.+|.... ..+..+++.......
T Consensus 111 lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~-~dl~~ll~~h~~~~~ 157 (425)
T PRK00725 111 RGTADAVYQNLDIIRRYDPKYVVILAGDHIYK-MDYSRMLADHVESGA 157 (425)
T ss_pred cCcHHHHHHHHHHHHhcCCCEEEEecCCeEec-cCHHHHHHHHHHcCC
Confidence 688888877776654 57899999998654 458888876655443
No 342
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=48.46 E-value=88 Score=27.86 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=41.3
Q ss_pred HHHHHHHHhc---CCcEEEEEecCCCChhHHHHhhhhhcc-CcEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674 4 KKLEDYIERF---NGKVRLIRNTEREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 70 (439)
Q Consensus 4 ~~l~~~~~~~---~~~i~~i~~~~n~G~a~arN~G~~~A~-g~~i~flD~D~~~~~~~l~~l~~~~~~~~~ 70 (439)
+.+++++++. +..+.++..++..|.+.+.-.|..... +++ +++++|..+..+.. .++..+.+...
T Consensus 58 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~~~~~-li~~~D~~~~~~~~-~~~~~~~~~~~ 126 (236)
T cd04189 58 EEIKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFLGDEPF-VVYLGDNLIQEGIS-PLVRDFLEEDA 126 (236)
T ss_pred HHHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHHHhcCCCCE-EEEECCeecCcCHH-HHHHHHHhcCC
Confidence 4566666542 234666665666788888878877655 555 55889998877754 55555544433
No 343
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=46.87 E-value=2e+02 Score=25.28 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=53.3
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc------CCcEEEEE--cCCCCCHHHH
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF------NGKVRLIR--NTEREGLIRT 345 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~------~~~v~~i~--~~~~~g~~~a 345 (439)
.+|.-|. ..|..+|+.+.+.... +|+||-....+. ..+.+.+.. ...+.++. .....|-+.+
T Consensus 25 llpv~g~--pli~~~l~~l~~~gi~----~i~vv~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~ 94 (216)
T cd02507 25 LLPVANV--PLIDYTLEWLEKAGVE----EVFVVCCEHSQA----IIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALR 94 (216)
T ss_pred cceECCE--EHHHHHHHHHHHCCCC----eEEEEeCCcHHH----HHHHHHhcccccccCCceEEEEEccCCCCCccHHH
Confidence 4455565 5888888888864322 677775544333 222222221 11233332 3456787777
Q ss_pred HHHHHhhcCCCEEEEEcCCCccCCCChHHHHH
Q psy8674 346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 377 (439)
Q Consensus 346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~ 377 (439)
...+......+ ++++.+|.....+ +..+++
T Consensus 95 l~~~~~~i~~d-flv~~gD~i~~~~-l~~~l~ 124 (216)
T cd02507 95 LRDIRGLIRSD-FLLLSCDLVSNIP-LSELLE 124 (216)
T ss_pred HHHHhhcCCCC-EEEEeCCEeecCC-HHHHHH
Confidence 77777766665 6679999776554 666664
No 344
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=45.44 E-value=1.8e+02 Score=26.20 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=50.8
Q ss_pred eEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC--CC---HHHH
Q psy8674 271 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER--EG---LIRT 345 (439)
Q Consensus 271 vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~--~g---~~~a 345 (439)
|..+|.+|+..++.+.+.+..+-. ..+. =+|-||-.|++...+ .++++...++ ++.++..... .| ...|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~--~~~~--f~iHiD~k~~~~~~~-~~~~~~~~~~-nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYH--PDND--FYIHIDKKSPDYFYE-EIKKLISCFP-NVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH----TTSE--EEEEE-TTS-HHHHH-HHHHHHCT-T-TEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcC--CCCE--EEEEEcCCCChHHHH-HHHHhcccCC-ceeecccccccccCCccHHHH
Confidence 345778877443777766666552 1221 346677776655444 4555545554 7877752222 22 3333
Q ss_pred HHHH----Hh-hcCCCEEEEEcCCCccCCCChHHHHHhhhcC
Q psy8674 346 RSRG----AK-ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD 382 (439)
Q Consensus 346 ~n~g----~~-~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~ 382 (439)
.-.+ ++ ...-+|+++|.+++.+-. ..+.+.+.++..
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~-s~~~i~~~l~~~ 115 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLK-SNEEIHEFLESN 115 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS--HHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCcEEEEccccccccc-chHHHHHHHHhc
Confidence 3333 33 236789999988887532 245555666555
No 345
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=45.41 E-value=1.9e+02 Score=24.76 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEc
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 362 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld 362 (439)
..|.+.++.+.+ . ..+|+|+-+-++..|.+ .+.+. .+.++. ....|+-.-+|.+++.... =++.+.
T Consensus 28 pLI~~v~~al~~-~----~d~i~v~isp~tp~t~~-~~~~~------gv~vi~-tpG~GYv~Dl~~al~~l~~-P~lvvs 93 (177)
T COG2266 28 PLIDRVLEALRK-I----VDEIIVAISPHTPKTKE-YLESV------GVKVIE-TPGEGYVEDLRFALESLGT-PILVVS 93 (177)
T ss_pred cHHHHHHHHHHh-h----cCcEEEEeCCCCHhHHH-HHHhc------CceEEE-cCCCChHHHHHHHHHhcCC-ceEEEe
Confidence 466677776665 1 22899998888877644 33332 488885 4556899999999988776 677788
Q ss_pred CCCcc-CCCChHHHHHhhh
Q psy8674 363 AHCEV-GLNWLPPLLAPIY 380 (439)
Q Consensus 363 ~D~~~-~~~~l~~l~~~~~ 380 (439)
+|..+ .|..|..+++.+.
T Consensus 94 aDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 94 ADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred cccccCCHHHHHHHHHHHh
Confidence 88875 7999999999888
No 346
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=44.92 E-value=1.1e+02 Score=27.12 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=33.1
Q ss_pred cEEEEEe-cCCCChhHHHHhhhhhcc-CcEEEEecCCcccCCCchHHHHH
Q psy8674 16 KVRLIRN-TEREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLA 63 (439)
Q Consensus 16 ~i~~i~~-~~n~G~a~arN~G~~~A~-g~~i~flD~D~~~~~~~l~~l~~ 63 (439)
+++++.+ ++..|.+.+.-.|..... .+.++++++|+....+....+..
T Consensus 71 ~~~i~~~~~~~~g~~~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~ 120 (231)
T cd04183 71 NATVVELDGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAA 120 (231)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHH
Confidence 4554433 456788888877777654 46778899999988886655443
No 347
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=44.79 E-value=22 Score=31.71 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=33.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEeee
Q psy8674 330 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 330 ~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
.+.++..+ ..|...|.+.|+.....+-++++-+|.-. .+.-|..++....+ ...+++|.-
T Consensus 64 g~~vl~d~-~~gLN~Al~~a~~~~~~~~vlvl~aDLPll~~~dl~~~l~~~~~-~~vviap~r 124 (217)
T PF01983_consen 64 GAEVLPDP-GRGLNAALNAALAAAGDDPVLVLPADLPLLTPEDLDALLAAAGR-ADVVIAPDR 124 (217)
T ss_dssp SSEEEE----S-HHHHHHHHHH-H--S-EEEE-S--TT--HHHHHHHCT-SS---SEEEEE-G
T ss_pred CCeEecCC-CCCHHHHHHHHHhccCCCceEEeecCCccCCHHHHHHHHhccCC-CCEEEeCCC
Confidence 57777655 67888999988655567788889999874 68888888877543 357777764
No 348
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=44.68 E-value=1.6e+02 Score=25.61 Aligned_cols=79 Identities=10% Similarity=0.091 Sum_probs=50.5
Q ss_pred CC-ChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc--CCCCCHHHHHHHHHhhcCC
Q psy8674 279 NE-GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN--TEREGLIRTRSRGAKESRG 355 (439)
Q Consensus 279 n~-~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~g~~~a~n~g~~~a~~ 355 (439)
+. . ..|..+++.+... . . +|+||-+. +. .. . .+.++.. ....|.-.+...++.....
T Consensus 32 ~g~~-~ll~~~i~~l~~~-~--~--~vvvv~~~--~~-~~---------~--~~~~v~d~~~~~~gpl~gi~~~l~~~~~ 91 (196)
T PRK00560 32 GSYS-SLLEYQYTRLLKL-F--K--KVYISTKD--KK-FE---------F--NAPFLLEKESDLFSPLFGIINAFLTLQT 91 (196)
T ss_pred CCCC-cHHHHHHHHHHHh-C--C--EEEEEECc--hh-cc---------c--CCcEEecCCCCCCCcHHHHHHHHHhcCC
Confidence 44 5 7888888888754 1 1 66766542 11 11 1 2334433 2234666677777777788
Q ss_pred CEEEEEcCCCcc-CCCChHHHHH
Q psy8674 356 EVIVFLDAHCEV-GLNWLPPLLA 377 (439)
Q Consensus 356 d~i~~ld~D~~~-~~~~l~~l~~ 377 (439)
++++++-+|.-+ +++.++.+..
T Consensus 92 ~~vlv~~~D~P~i~~~~i~~l~~ 114 (196)
T PRK00560 92 PEIFFISVDTPFVSFESIKKLCG 114 (196)
T ss_pred CeEEEEecCcCcCCHHHHHHHHh
Confidence 999999999975 7888888843
No 349
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=44.65 E-value=62 Score=29.62 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=41.3
Q ss_pred cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCC--chHHHHHHHhcCCC
Q psy8674 16 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLN--WLPPLLAPIYSDRK 70 (439)
Q Consensus 16 ~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~--~l~~l~~~~~~~~~ 70 (439)
.+.++..++..|.+.|.-.++...+.+-++++.+|..+... .+..+++.+.+...
T Consensus 94 ~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (267)
T cd02541 94 NIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA 150 (267)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence 46666656668999999888887766667888899887653 58899988765443
No 350
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=44.21 E-value=1.9e+02 Score=28.11 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=57.7
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cC-----CcEEEE----EcCC---
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FN-----GKVRLI----RNTE--- 338 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~-----~~v~~i----~~~~--- 338 (439)
.+|.-+.. ..|...|+.+.+.... +|+||-.. ..+ .+.++... ++ ..++++ ...+
T Consensus 28 llpv~gk~-pli~~~l~~l~~~Gi~----~i~iv~~~-~~~----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 97 (380)
T PRK05293 28 AVPFGGKY-RIIDFTLSNCANSGID----TVGVLTQY-QPL----ELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKW 97 (380)
T ss_pred eeeeCCce-eehhHHHHHHHhCCCC----EEEEEecC-CHH----HHHHHHhCCCcccccCCCCCEEEeCCcccCCCCcc
Confidence 56777764 5788888888775432 67666543 222 23333321 11 123432 1122
Q ss_pred CCCHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhhcC
Q psy8674 339 REGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSD 382 (439)
Q Consensus 339 ~~g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~~~ 382 (439)
..|.+.|+..+..... .+.++++.+|..+.. .+..+++.....
T Consensus 98 ~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~-d~~~ll~~h~~~ 143 (380)
T PRK05293 98 YKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKM-DYDKMLDYHKEK 143 (380)
T ss_pred cCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcC-CHHHHHHHHHhc
Confidence 2678888887777654 478999999987654 466777655443
No 351
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=43.46 E-value=57 Score=29.65 Aligned_cols=46 Identities=13% Similarity=-0.038 Sum_probs=31.9
Q ss_pred CChhHHHHhhhhhccC-cEEEEecCCcccCCCchHHHHHHHhcCCCeE
Q psy8674 26 EGLIRTRSRGAKESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM 72 (439)
Q Consensus 26 ~G~a~arN~G~~~A~g-~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~ 72 (439)
.|.+.|.=.+...-.+ +.++++++|.+...+. ..+++.+......+
T Consensus 102 ~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~~~~~~ 148 (253)
T cd02524 102 TMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRSHGKLA 148 (253)
T ss_pred cccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHHcCCCE
Confidence 3455555555555544 7899999999988776 88888776554433
No 352
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=43.46 E-value=2.8e+02 Score=27.34 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=49.8
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC--CCCHHHHHHHHHh
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGLIRTRSRGAK 351 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~g~~~a~n~g~~ 351 (439)
.+|.-+. ..|...++.+... . . +|+||- +...+ .+.++..+....++++..+. ..|.+.+... +
T Consensus 24 Llpi~gk--Pli~~~i~~l~~~-~-~---~i~Ivv-~~~~~----~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~-~- 89 (430)
T PRK14359 24 LHTICGK--PMLFYILKEAFAI-S-D---DVHVVL-HHQKE----RIKEAVLEYFPGVIFHTQDLENYPGTGGALMG-I- 89 (430)
T ss_pred eCEECCc--cHHHHHHHHHHHc-C-C---cEEEEE-CCCHH----HHHHHHHhcCCceEEEEecCccCCCcHHHHhh-c-
Confidence 4466565 5888888888764 2 1 455544 33332 23333333222577765432 2455555543 2
Q ss_pred hcCCCEEEEEcCCCc-cCCCChHHHH
Q psy8674 352 ESRGEVIVFLDAHCE-VGLNWLPPLL 376 (439)
Q Consensus 352 ~a~~d~i~~ld~D~~-~~~~~l~~l~ 376 (439)
....+.++++++|.. +.+..++.++
T Consensus 90 ~~~~d~vlv~~gD~p~~~~~~l~~l~ 115 (430)
T PRK14359 90 EPKHERVLILNGDMPLVEKDELEKLL 115 (430)
T ss_pred ccCCCeEEEEECCccCCCHHHHHHHH
Confidence 224689999999984 4566666554
No 353
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=43.38 E-value=55 Score=30.23 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccC--CCChHHHHHhhhcCCC
Q psy8674 330 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVG--LNWLPPLLAPIYSDRK 384 (439)
Q Consensus 330 ~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~--~~~l~~l~~~~~~~~~ 384 (439)
++.+++..+..|.+.|...|-.....+-++++=+|+.+. ...+.+|++..+....
T Consensus 98 ~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~ 154 (291)
T COG1210 98 TISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGG 154 (291)
T ss_pred eEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCC
Confidence 688899999999999999999998888555555555543 6788999999887555
No 354
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=43.18 E-value=1.5e+02 Score=29.29 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=58.8
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC---CcEEEEEc-C--C------CCC
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN---GKVRLIRN-T--E------REG 341 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~---~~v~~i~~-~--~------~~g 341 (439)
.+|.-+.. ..|...|+++.+.... +|+|+-....+. +.+.+. ..+. ..+.++.. + . ..|
T Consensus 30 llPv~gk~-plI~~~L~~l~~~Gi~----~i~iv~~~~~~~-i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lG 100 (407)
T PRK00844 30 AVPFGGSY-RLIDFVLSNLVNSGYL----RIYVLTQYKSHS-LDRHIS---QTWRLSGLLGNYITPVPAQQRLGKRWYLG 100 (407)
T ss_pred ceeeCCcc-eEhHHHHHHHHHCCCC----EEEEEeccCHHH-HHHHHH---hCcCccccCCCeEEECCcccCCCCCcccC
Confidence 56777764 5788888888875433 777776544322 221222 2111 01222211 1 1 367
Q ss_pred HHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 342 LIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 342 ~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
.+.|+..+..... .++++++.+|.... ..+..+++.......
T Consensus 101 ta~al~~a~~~i~~~~~~~~lv~~gD~v~~-~dl~~l~~~h~~~~~ 145 (407)
T PRK00844 101 SADAIYQSLNLIEDEDPDYVVVFGADHVYR-MDPRQMVDFHIESGA 145 (407)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCEEEc-CCHHHHHHHHHhcCC
Confidence 8888877776653 36899999998654 567778876655443
No 355
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=42.27 E-value=1.1e+02 Score=28.79 Aligned_cols=54 Identities=9% Similarity=0.056 Sum_probs=38.2
Q ss_pred cEEEEEecCCCChhHHHHhhhhhccC-cEEEEecCCcccCCC-------chHHHHHHHhcCCC
Q psy8674 16 KVRLIRNTEREGLIRTRSRGAKESRG-EVIVFLDAHCEVGLN-------WLPPLLAPIYSDRK 70 (439)
Q Consensus 16 ~i~~i~~~~n~G~a~arN~G~~~A~g-~~i~flD~D~~~~~~-------~l~~l~~~~~~~~~ 70 (439)
+|+++..++..|.+.|.-.+...-.. +++ .+.+|+.+++. -+..+++.+.+...
T Consensus 98 ~i~~~~q~~~lGtg~Av~~a~~~l~~~~fl-vv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~ 159 (297)
T TIGR01105 98 TIMNVRQAQPLGLGHSILCARPVVGDNPFV-VVLPDIIIDDATADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred eEEEeeCCCcCchHHHHHHHHHHhCCCCEE-EEECCeeccccccccchhHHHHHHHHHHHhCC
Confidence 57778778889999998888776543 455 44599877542 67788887764443
No 356
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=41.31 E-value=74 Score=28.94 Aligned_cols=56 Identities=13% Similarity=-0.018 Sum_probs=40.0
Q ss_pred cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCC--chHHHHHHHhcCCCe
Q psy8674 16 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLN--WLPPLLAPIYSDRKI 71 (439)
Q Consensus 16 ~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~--~l~~l~~~~~~~~~~ 71 (439)
++.++..++..|.+.|.-.+......+-++++.+|..+... -+..+++.+.+.+..
T Consensus 94 ~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ 151 (260)
T TIGR01099 94 TIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCS 151 (260)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCC
Confidence 45556555678988888878776555667888888887554 688899988765544
No 357
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=40.94 E-value=3.3e+02 Score=26.05 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=43.7
Q ss_pred hHHHHHHHHh---cCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCe
Q psy8674 3 DKKLEDYIER---FNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 71 (439)
Q Consensus 3 ~~~l~~~~~~---~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~ 71 (439)
.+.+++++.. +...+.++..++..|.+.+.-.++..-..+-++++++|..++. -+..+++.+.+...+
T Consensus 57 ~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~~~~~li~~gD~~~~~-~l~~l~~~~~~~~~d 127 (353)
T TIGR01208 57 GEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQD-GISRFVKSFEEKDYD 127 (353)
T ss_pred HHHHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHHhcCCCCEEEEECCeecCc-cHHHHHHHHHhcCCC
Confidence 3556777754 2224666655566788888877777654444556689998754 467788777655443
No 358
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=40.46 E-value=99 Score=27.59 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=41.5
Q ss_pred HHHHHHhcC---CcEEEEEecCCCChhHHHHhhhhhc-cCcEEEEecCCcc-cCCCchHHHHHHHhcCC
Q psy8674 6 LEDYIERFN---GKVRLIRNTEREGLIRTRSRGAKES-RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR 69 (439)
Q Consensus 6 l~~~~~~~~---~~i~~i~~~~n~G~a~arN~G~~~A-~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~ 69 (439)
++++++++. .+++++.... |...+.-.|++.. ..++++++|+|.- ++++.++.+++.+.+.+
T Consensus 61 ~~~~~~~~~~~~~~~~~v~~g~--~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~ 127 (230)
T PRK13385 61 VQDLMKQLNVADQRVEVVKGGT--ERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYG 127 (230)
T ss_pred HHHHHHhcCcCCCceEEcCCCc--hHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCC
Confidence 344555543 2456664222 3446666677654 3578999999997 59999999999987654
No 359
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=39.91 E-value=1.4e+02 Score=21.47 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=42.3
Q ss_pred eEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCC
Q psy8674 303 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHC 365 (439)
Q Consensus 303 eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~ 365 (439)
++.++-.-|.|.. ++....+.+. +..|+-..+.|-..|+-..++..+..+.+.+-+|.
T Consensus 11 ~~~~lvS~s~DGe---~ia~~~~~~G--~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~itpDG 68 (74)
T PF04028_consen 11 KIAALVSRSRDGE---LIARVLERFG--FRTIRGSSSRGGARALREMLRALKEGYSIAITPDG 68 (74)
T ss_pred CEEEEEccCcCHH---HHHHHHHHcC--CCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 6777777788875 6666666654 78888888888889998888888755555555553
No 360
>PF01793 Glyco_transf_15: Glycolipid 2-alpha-mannosyltransferase; InterPro: IPR002685 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This entry represents a family of fungi mannosyl-transferases involved in N-linked and O-linked glycosylation of proteins. They belong to the glycosyltransferase family 15 (GT15 from CAZY). Some of the enzymes in this family have been shown to be involved in O- and N-linked glycan modifications in the Golgi [].; GO: 0000030 mannosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 1S4P_A 1S4O_A 1S4N_A.
Probab=38.84 E-value=1.1e+02 Score=29.19 Aligned_cols=115 Identities=10% Similarity=0.111 Sum_probs=56.8
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC-------
Q psy8674 267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER------- 339 (439)
Q Consensus 267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~------- 339 (439)
..++-++|+-+.|++...+.++|+++-..=...+.+-.|+++|..=++...+.+.+.. .+.+.....++.
T Consensus 53 ~r~~Aafv~LvrN~dL~~~l~SI~~lE~rFN~kf~YpwvFlnd~pFteeFk~~i~~~~---~~~v~F~~Ip~e~W~~P~~ 129 (328)
T PF01793_consen 53 PRENAAFVMLVRNSDLEGLLSSIRSLEDRFNKKFNYPWVFLNDEPFTEEFKEAISNAT---SGKVEFGLIPKEHWSYPDW 129 (328)
T ss_dssp S---EEEEEE--GGGHHHHHHHHHHHHHHTTTTS---EEEEESS---HHHHHHHHHH----SS-EEEEE--GGGSS--TT
T ss_pred CCCceEEEEEEEchhHHHHHHHHHHHHHHccCCCCCCEEEEeCCCCCHHHHHHHHHhh---cCceEEEEeCHHHcCCCCc
Confidence 4568999999999988889999999887766667779999999876554443555443 235655433221
Q ss_pred CCHHHHHHHHHh------------------------------hcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 340 EGLIRTRSRGAK------------------------------ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 340 ~g~~~a~n~g~~------------------------------~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
.....+...-.+ ....+|..-+++|..+..+-=-..-..++++..
T Consensus 130 ID~~~a~~~~~~~~~~~v~yg~s~sYr~McRf~SG~F~~hp~l~~ydyyWRvEP~v~~~Cdi~YD~F~~M~~n~k 204 (328)
T PF01793_consen 130 IDQEKAAESREKMAEEGVPYGDSESYRHMCRFYSGFFYRHPLLQDYDYYWRVEPDVKFYCDIDYDPFRFMRDNNK 204 (328)
T ss_dssp S-HHHHHHHHHHHTT-TSTTTT-HHHHHHHHHHHHTGGGSGGGTT-SEEEE--TT-EE-S---S-HHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhcChhhcCccEEEEeCCCceeecCCCCCHHHHHHHhCC
Confidence 111111111100 124689999999988876655566666766554
No 361
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=38.37 E-value=54 Score=30.31 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=45.9
Q ss_pred hhHHHHHHHHhcCCcEEEEEec-------------------CCCChhHHHHhhhhhcc--CcEEEEecCCcccCCC----
Q psy8674 2 LDKKLEDYIERFNGKVRLIRNT-------------------EREGLIRTRSRGAKESR--GEVIVFLDAHCEVGLN---- 56 (439)
Q Consensus 2 ~~~~l~~~~~~~~~~i~~i~~~-------------------~n~G~a~arN~G~~~A~--g~~i~flD~D~~~~~~---- 56 (439)
+.+.|+.|.+.- .|+++.-+ ...|-..|.|-.+...+ .+|++|+|-|..+-|-
T Consensus 46 ~~~vL~~Y~~~g--~v~~~~w~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~ 123 (285)
T PF01697_consen 46 VRKVLKEYERSG--YVEVIPWPLRPKFPDFPSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPT 123 (285)
T ss_pred HHHhHHHHhhcC--eEEEEEcccccccCCcccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccc
Confidence 345677776663 68887764 11345677788877775 5889999999987433
Q ss_pred chHHHHHHHhcCCC
Q psy8674 57 WLPPLLAPIYSDRK 70 (439)
Q Consensus 57 ~l~~l~~~~~~~~~ 70 (439)
+.+.+.+.+++.+.
T Consensus 124 ~~~~~~~~l~~~~~ 137 (285)
T PF01697_consen 124 YPEEFEDLLREFPN 137 (285)
T ss_pred hhhHHHHHHhhccc
Confidence 47777777776544
No 362
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=38.10 E-value=1.3e+02 Score=29.99 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=42.3
Q ss_pred cEEEEEecCCCChhHHHHhhhhhcc-CcEEEEecCCc-ccCCCchHHHHHHHhcCCCeEe
Q psy8674 16 KVRLIRNTEREGLIRTRSRGAKESR-GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMT 73 (439)
Q Consensus 16 ~i~~i~~~~n~G~a~arN~G~~~A~-g~~i~flD~D~-~~~~~~l~~l~~~~~~~~~~~v 73 (439)
.+.++..++..|.+.+.-.++.... .+.++++++|. .+.+..++.+++.+.+...+++
T Consensus 63 ~~~~~~~~~~~g~~~ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~t 122 (448)
T PRK14357 63 WVKIFLQEEQLGTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVT 122 (448)
T ss_pred ccEEEecCCCCChHHHHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEE
Confidence 3556655666788888877776654 58999999998 4677888999988876554443
No 363
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=38.00 E-value=61 Score=28.49 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=39.7
Q ss_pred cEEEEEecCCCChhHHHHhhhhhc---cCcEEEEecCCcc-cCCCchHHHHHHHhcCCC
Q psy8674 16 KVRLIRNTEREGLIRTRSRGAKES---RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRK 70 (439)
Q Consensus 16 ~i~~i~~~~n~G~a~arN~G~~~A---~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~ 70 (439)
.+.++... .|.+.+.-.|++.. ..++++++++|.- ++++.++.+++.+...+.
T Consensus 70 ~~~~~~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~ 126 (218)
T cd02516 70 VVKIVEGG--ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA 126 (218)
T ss_pred CeEEECCc--hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc
Confidence 35555432 35667788888765 5789999999997 699999999999876543
No 364
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=37.96 E-value=3.1e+02 Score=27.20 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc-C-CC-EEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-R-GE-VIV 359 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a-~-~d-~i~ 359 (439)
..|...|++....... .|++|-....+. +.+.+.+. + .+.++...+..|-+.|.-.+...- . .+ .++
T Consensus 31 pMl~hVi~~a~~l~~~----~i~vVvGh~ae~----V~~~~~~~-~-~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vL 100 (460)
T COG1207 31 PMLEHVIDAARALGPD----DIVVVVGHGAEQ----VREALAER-D-DVEFVLQEEQLGTGHAVLQALPALADDYDGDVL 100 (460)
T ss_pred cHHHHHHHHHhhcCcc----eEEEEEcCCHHH----HHHHhccc-c-CceEEEecccCChHHHHHhhhhhhhcCCCCcEE
Confidence 5777788877765543 444443332221 22333222 2 477887888999999999998876 3 33 688
Q ss_pred EEcCCCcc-CCCChHHHHHhhhcCCC
Q psy8674 360 FLDAHCEV-GLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 360 ~ld~D~~~-~~~~l~~l~~~~~~~~~ 384 (439)
++.+|.-+ .++.|+.|++.-.....
T Consensus 101 Vl~GD~PLit~~TL~~L~~~~~~~~~ 126 (460)
T COG1207 101 VLYGDVPLITAETLEELLAAHPAHGA 126 (460)
T ss_pred EEeCCcccCCHHHHHHHHHhhhhcCC
Confidence 89999885 78999988887764444
No 365
>PLN03153 hypothetical protein; Provisional
Probab=37.82 E-value=70 Score=32.42 Aligned_cols=53 Identities=9% Similarity=-0.068 Sum_probs=32.8
Q ss_pred CCCHHHHHHH------HHhh--cCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674 339 REGLIRTRSR------GAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 391 (439)
Q Consensus 339 ~~g~~~a~n~------g~~~--a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 391 (439)
..|...++.. .++. -..+|++|+|+|+.+..+-|..+++.+.......++...
T Consensus 187 ~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~S 247 (537)
T PLN03153 187 PTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPS 247 (537)
T ss_pred CCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccc
Confidence 3466666655 2222 457999999999999755555555555544445555443
No 366
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=37.77 E-value=1.7e+02 Score=27.29 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=41.6
Q ss_pred HHHHHHHh---cCCcEEEEEecCCCChhHHHHhhhhhccC-cEEEEecCCcccCCCchHHHHHHHhcCC
Q psy8674 5 KLEDYIER---FNGKVRLIRNTEREGLIRTRSRGAKESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSDR 69 (439)
Q Consensus 5 ~l~~~~~~---~~~~i~~i~~~~n~G~a~arN~G~~~A~g-~~i~flD~D~~~~~~~l~~l~~~~~~~~ 69 (439)
.+++++.. +.-++.++..++..|.+.|.-.|...-.+ +++++ .+|..+.+.-+..+++.+.+..
T Consensus 59 ~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~~~l~~~~~~li-~gD~i~~~~~l~~ll~~~~~~~ 126 (286)
T TIGR01207 59 RFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGGDPSALV-LGDNIFYGHDLSDLLKRAAARE 126 (286)
T ss_pred HHHHHhccccccCceEEEEEccCCCCHHHHHHHHHHHhCCCCEEEE-ECCEeccccCHHHHHHHHHhcC
Confidence 44555532 22357777766788999998888876554 45554 5887765566788887765443
No 367
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=37.37 E-value=4.6e+02 Score=26.64 Aligned_cols=120 Identities=8% Similarity=0.118 Sum_probs=65.5
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCC-cEEEEEcCCCCCHHHHHHHHHhh
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREGLIRTRSRGAKE 352 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~v~~i~~~~~~g~~~a~n~g~~~ 352 (439)
.++..+.. ..|..+++.+...... +.+||-+. .... .+++.....+. ...++-.+...+-+.|.-.|+..
T Consensus 31 ~l~l~~~~-sllq~t~~r~~~~~~~----~~iivt~~---~~~~-~v~~ql~~~~~~~~~ii~EP~~rnTApaialaa~~ 101 (478)
T PRK15460 31 FLCLKGDL-TMLQTTICRLNGVECE----SPVVICNE---QHRF-IVAEQLRQLNKLTENIILEPAGRNTAPAIALAALA 101 (478)
T ss_pred eeECCCCC-CHHHHHHHHHHhCCCC----CcEEEeCH---HHHH-HHHHHHHhcCCccccEEecCCCCChHHHHHHHHHH
Confidence 46677666 7899999987764332 44555322 2222 45544444431 13566566666667666655544
Q ss_pred cC------CCEEEEEcCCCccCC--CChHHHHHhhh--cCCCEEEEeeeeeecCCCceEE
Q psy8674 353 SR------GEVIVFLDAHCEVGL--NWLPPLLAPIY--SDRKIMTVPVIDGIDYQTWEFR 402 (439)
Q Consensus 353 a~------~d~i~~ld~D~~~~~--~~l~~l~~~~~--~~~~~~v~~~~~~~~~~~~~~~ 402 (439)
+. ...++++-+|-.+.+ .+...+.+.+. +....+..++.-......+.|-
T Consensus 102 ~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI 161 (478)
T PRK15460 102 AKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYI 161 (478)
T ss_pred HHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeE
Confidence 31 258899999988754 24444444432 2244444444333333344444
No 368
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=37.17 E-value=1e+02 Score=28.06 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=32.4
Q ss_pred CCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeE
Q psy8674 24 EREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM 72 (439)
Q Consensus 24 ~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~ 72 (439)
+..|-+.|.-.+...-..+.++++++|.+...+ +..+++.+.+...++
T Consensus 101 ~~~gt~~al~~~~~~i~~e~flv~~gD~i~~~d-l~~~~~~h~~~~~d~ 148 (254)
T TIGR02623 101 ESTQTGGRLKRVREYLDDEAFCFTYGDGVADID-IKALIAFHRKHGKKA 148 (254)
T ss_pred CcCCcHHHHHHHHHhcCCCeEEEEeCCeEecCC-HHHHHHHHHHcCCCE
Confidence 446777777666665555677799999977655 667777766554443
No 369
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=36.90 E-value=98 Score=26.87 Aligned_cols=49 Identities=10% Similarity=-0.082 Sum_probs=35.4
Q ss_pred CCCChhHHHHhhhhhcc---CcEEEEecCCcccCCCchHHHHHHHhcCCCeEe
Q psy8674 24 EREGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMT 73 (439)
Q Consensus 24 ~n~G~a~arN~G~~~A~---g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v 73 (439)
+..|.+.|.-.|..... .+.++++.+|... +.-+..+++.+.+.+..++
T Consensus 91 ~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~-~~~~~~~l~~~~~~~~~~t 142 (200)
T cd02508 91 WYRGTADAIYQNLDYIERSDPEYVLILSGDHIY-NMDYREMLDFHIESGADIT 142 (200)
T ss_pred cccCcHHHHHHHHHHHHhCCCCEEEEecCCEEE-ecCHHHHHHHHHHcCCCEE
Confidence 45788888888877553 5788899999954 4558888887776554443
No 370
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=36.32 E-value=88 Score=31.39 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc-CcEEEEecCCc-ccCCCchHHHHHHHhcC
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR-GEVIVFLDAHC-EVGLNWLPPLLAPIYSD 68 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~-g~~i~flD~D~-~~~~~~l~~l~~~~~~~ 68 (439)
+.+++++... +++++..++..|.+.+.-.|+.... .+.++++++|. .+.+..++.+++...+.
T Consensus 60 ~~i~~~~~~~--~~~~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~ 124 (456)
T PRK09451 60 DLLKQTLADE--PLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQG 124 (456)
T ss_pred HHHHHhhccC--CcEEEECCCCCCcHHHHHHHHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcC
Confidence 3455555432 5777776677788888777776543 57899999998 46778888888765443
No 371
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=35.77 E-value=4e+02 Score=25.48 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=71.2
Q ss_pred eEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-----------CC
Q psy8674 271 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-----------ER 339 (439)
Q Consensus 271 vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-----------~~ 339 (439)
+.|+..+=+.-...+.-+|.|++..+.. ..+.+-++++|=+++... .+.+..+.+...+.+.... .+
T Consensus 3 ~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~-~l~~~~~~f~~~i~~~~id~~~~~~~~~~~~~ 80 (325)
T COG1442 3 IPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKK-KLNETAEPFKSFIVLEVIDIEPFLDYPPFTKR 80 (325)
T ss_pred ccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHH-HHHHHHHhhccceeeEEEechhhhcccccccc
Confidence 4455555444336778899999987754 233888888887776555 7888887776555544322 11
Q ss_pred CC-HHHHHHHHHhhcC-CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674 340 EG-LIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV 390 (439)
Q Consensus 340 ~g-~~~a~n~g~~~a~-~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 390 (439)
.. ..-+|-.....-. .+=++.+|+|..+..+ |+.+...-..+...+++..
T Consensus 81 ~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~-l~~lf~~~~~~~~~aaV~D 132 (325)
T COG1442 81 FSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGD-LSELFFIDLEEYYLAAVRD 132 (325)
T ss_pred hHHHHHHHHHHHHhccccCeEEEEecCEEEcCc-HHHHHhcCCCcceEEEEee
Confidence 21 1122333333333 4999999999888655 6666665555554444433
No 372
>PLN02436 cellulose synthase A
Probab=35.74 E-value=1e+02 Score=34.19 Aligned_cols=56 Identities=16% Similarity=0.023 Sum_probs=45.8
Q ss_pred CCCCceEEEEEecCC---ChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHH
Q psy8674 266 LDLPKASVILVFHNE---GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 321 (439)
Q Consensus 266 ~~~p~vsiiip~~n~---~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~ 321 (439)
.++|.|.|.|+|-+. ++-....|+-|+++-+||..+.-+.|.|||.+.-|.+...+
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~E 420 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSE 420 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHH
Confidence 468999999999754 34667889999999999977778999999999888774443
No 373
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=35.42 E-value=53 Score=34.70 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=43.8
Q ss_pred cEEEEEcCCCCC-----HHHHHHHHHhh----cCCCEEEEEcCCCcc-CCCChHHHHHhhhcCC
Q psy8674 330 KVRLIRNTEREG-----LIRTRSRGAKE----SRGEVIVFLDAHCEV-GLNWLPPLLAPIYSDR 383 (439)
Q Consensus 330 ~v~~i~~~~~~g-----~~~a~n~g~~~----a~~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~ 383 (439)
.+.++..+++.| +++|+|.-++. +++.||+-+|.|... .+..+.+.+-.+.+..
T Consensus 167 ~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~ 230 (720)
T PF03552_consen 167 MLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPK 230 (720)
T ss_pred eEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCC
Confidence 677887777655 78899988764 469999999999987 5889999888887755
No 374
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=35.22 E-value=91 Score=27.85 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=40.0
Q ss_pred HHHHHHHhcC--CcEEEEEecCCCChhHHHHhhhhhccCcE-EEEecCCcccCCCchHHHHHHHhcCC
Q psy8674 5 KLEDYIERFN--GKVRLIRNTEREGLIRTRSRGAKESRGEV-IVFLDAHCEVGLNWLPPLLAPIYSDR 69 (439)
Q Consensus 5 ~l~~~~~~~~--~~i~~i~~~~n~G~a~arN~G~~~A~g~~-i~flD~D~~~~~~~l~~l~~~~~~~~ 69 (439)
...+++++.+ ++|.++. | +.|.-.--+.+.|.| ++|+|+|=.--|.+++..+..+....
T Consensus 99 ~A~~n~~~ag~~~~i~~~~-----~-gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GG 160 (219)
T COG4122 99 IARENLAEAGVDDRIELLL-----G-GDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGG 160 (219)
T ss_pred HHHHHHHHcCCcceEEEEe-----c-CcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCc
Confidence 3455666655 5666665 1 233333333455665 89999999999999999999987543
No 375
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=34.50 E-value=3.2e+02 Score=23.96 Aligned_cols=100 Identities=11% Similarity=-0.020 Sum_probs=54.9
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH-c---CCcEEEEEcCCCCCHHHHHHHH
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR-F---NGKVRLIRNTEREGLIRTRSRG 349 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~---~~~v~~i~~~~~~g~~~a~n~g 349 (439)
.+|.-|. ..|...|+++.+.... +|+|+-+... +...+.+.+.... . ...+.++..++..|.+.+....
T Consensus 25 llpi~g~--piI~~~l~~l~~~Gi~----~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~al~~~ 97 (217)
T cd04197 25 LLPLANV--PLIDYTLEFLALNGVE----EVFVFCCSHS-DQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRDL 97 (217)
T ss_pred eeEECCE--ehHHHHHHHHHHCCCC----eEEEEeCCCH-HHHHHHHhhccccccccCcceEEEEeCCCcCccchHHHHH
Confidence 5666676 4888899998875432 7777765432 2223233321110 0 0135666555555655554322
Q ss_pred Hhh-cCCCEEEEEcCCCccCCCChHHHHHhhhc
Q psy8674 350 AKE-SRGEVIVFLDAHCEVGLNWLPPLLAPIYS 381 (439)
Q Consensus 350 ~~~-a~~d~i~~ld~D~~~~~~~l~~l~~~~~~ 381 (439)
... .-.+.++++.+|.... .-+..+++....
T Consensus 98 ~~~~~~~~~flv~~gD~i~~-~dl~~~l~~h~~ 129 (217)
T cd04197 98 DAKGLIRGDFILVSGDVVSN-IDLKEILEEHKE 129 (217)
T ss_pred hhccccCCCEEEEeCCeeec-cCHHHHHHHHHH
Confidence 111 1134467889997765 447788877654
No 376
>PLN02400 cellulose synthase
Probab=34.43 E-value=1.1e+02 Score=34.03 Aligned_cols=56 Identities=18% Similarity=0.021 Sum_probs=45.9
Q ss_pred CCCCceEEEEEecCC---ChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHH
Q psy8674 266 LDLPKASVILVFHNE---GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 321 (439)
Q Consensus 266 ~~~p~vsiiip~~n~---~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~ 321 (439)
.++|.|.|.|+|-+. .+-....++-|+++-+||.-+.-+.|.|||.+.-|.+...+
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~E 411 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSE 411 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHH
Confidence 468999999999754 33567889999999999977778999999999888774443
No 377
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=34.32 E-value=3.4e+02 Score=25.35 Aligned_cols=138 Identities=11% Similarity=0.031 Sum_probs=74.6
Q ss_pred hccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCCCCccccccccccccccCCC--chH
Q psy8674 38 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENEL--PER 115 (439)
Q Consensus 38 ~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 115 (439)
.|.-|||.+.|.|..++..-+.++++.+.+..-.+.-|.+..-.. .+.|......... -..
T Consensus 114 v~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~-----------------~~~~~iT~R~~~~~vhr~ 176 (294)
T PF05212_consen 114 VAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSS-----------------EIHHPITKRRPDSEVHRK 176 (294)
T ss_pred hccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCc-----------------eeeeeEEeecCCceeEec
Confidence 345799999999999999999999999987765555444332100 0111111100000 000
Q ss_pred HHhhccCCCCCcc---CccccceEEEEeHHHHHHhC-CCCCCC-CCccchhhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674 116 EAKKRKYNSEPYK---SPTHAGGLFAMDRAFFLELG-GYDPGL-LVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 116 ~~~~~~~~~~~~~---~~~~~g~~~~irr~~f~~iG-gfde~~-~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~ 190 (439)
..........+.. +.++...+=.++|+++.-+= .+-.++ ..|| =|.-|..-+.....+|-.+-...|.|..-|.
T Consensus 177 ~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWG-LDf~~~~c~~~~~~kiGVVDs~~VvH~gvpt 255 (294)
T PF05212_consen 177 TRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWG-LDFKWGYCAGDRHKKIGVVDSQYVVHTGVPT 255 (294)
T ss_pred cCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccc-hhhhHHHHhccccccEEEEeeEEEEEcCCCc
Confidence 0000000011111 11222223357899887665 333333 3454 5556666665567899999999999997666
Q ss_pred ccc
Q psy8674 191 FKA 193 (439)
Q Consensus 191 ~~~ 193 (439)
+..
T Consensus 256 LG~ 258 (294)
T PF05212_consen 256 LGG 258 (294)
T ss_pred CCC
Confidence 554
No 378
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=34.17 E-value=1.6e+02 Score=25.31 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhc-cCcEEEEecCCcc-cCCCchHHHHHHHhcCC
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKES-RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR 69 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A-~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~ 69 (439)
+.++.+++... ..++ +....|.+.+...|++.. ..+.++++-+|.. +.+..++.+++.+...+
T Consensus 54 ~~~~~~l~~~~--~~~~-~~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~ 118 (183)
T TIGR00454 54 PKTEEYINSAY--KDYK-NASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIK 118 (183)
T ss_pred HHHHHHHhhcC--cEEE-ecCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcC
Confidence 35566665432 2233 366778888888998853 3678999999997 59999999999886544
No 379
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=33.65 E-value=1.2e+02 Score=33.62 Aligned_cols=56 Identities=20% Similarity=-0.005 Sum_probs=45.7
Q ss_pred CCCCceEEEEEecCC---ChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHH
Q psy8674 266 LDLPKASVILVFHNE---GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 321 (439)
Q Consensus 266 ~~~p~vsiiip~~n~---~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~ 321 (439)
..+|.|.|.|+|-+. ++-....|+-|+++-+||.-+.-+.|.|||.+.-|.+...+
T Consensus 284 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~E 342 (1044)
T PLN02915 284 NRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSE 342 (1044)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHH
Confidence 358999999999754 34667889999999999977778999999999888774443
No 380
>KOG3765|consensus
Probab=33.44 E-value=49 Score=32.39 Aligned_cols=45 Identities=11% Similarity=-0.028 Sum_probs=37.4
Q ss_pred HhCCCCCCCCCccchhhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674 146 ELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPV 190 (439)
Q Consensus 146 ~iGgfde~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~ 190 (439)
+.--||++|+..|..=.-..+-|..++|+....+.+..+|.+...
T Consensus 308 ~~p~yd~ry~~~g~~~~s~~y~lc~~~Y~f~vl~~~f~vHk~~~~ 352 (386)
T KOG3765|consen 308 EDPAYDERYFPLGHNKQSQVYTLCGAEYEFLVLSLAFTVHKGLKE 352 (386)
T ss_pred CCcchhhhhCccccchHHHHHHHHhcCCeeeecccceeeecCccc
Confidence 344589999888877777889999999999999999999987544
No 381
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=32.96 E-value=1.4e+02 Score=26.17 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=34.1
Q ss_pred ChhHHHHhhhhhc-cCcEEEEecCCcc-cCCCchHHHHHHHhcCC
Q psy8674 27 GLIRTRSRGAKES-RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR 69 (439)
Q Consensus 27 G~a~arN~G~~~A-~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~ 69 (439)
+...+.-.|++.. ..++++++++|.- ++++.++.+++.+.+.+
T Consensus 76 ~~~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 120 (217)
T TIGR00453 76 TRQDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKAG 120 (217)
T ss_pred hHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 3455666777766 6789999999996 69999999999887643
No 382
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=32.78 E-value=82 Score=26.81 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=34.3
Q ss_pred CChhHHHHhhhhhc---cCcEEEEecCCcc-cCCCchHHHHHHHhcCCC
Q psy8674 26 EGLIRTRSRGAKES---RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRK 70 (439)
Q Consensus 26 ~G~a~arN~G~~~A---~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~ 70 (439)
.|.+.+.=.|++.+ +.++++++=+|+- ++++.++.+++.+.....
T Consensus 57 ~gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~~ 105 (178)
T PRK00576 57 LGPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTDA 105 (178)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCCC
Confidence 46667666667654 5799999999997 599999999987654443
No 383
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=32.46 E-value=1.2e+02 Score=30.32 Aligned_cols=53 Identities=8% Similarity=-0.027 Sum_probs=39.1
Q ss_pred EEEEEecCCCChhHHHHhhhhhcc--CcEEEEecCCc-ccCCCchHHHHHHHhcCC
Q psy8674 17 VRLIRNTEREGLIRTRSRGAKESR--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDR 69 (439)
Q Consensus 17 i~~i~~~~n~G~a~arN~G~~~A~--g~~i~flD~D~-~~~~~~l~~l~~~~~~~~ 69 (439)
+.++..++..|.+.+.-.++..-+ .+.++++++|. .+.+..|+.+++.+.+..
T Consensus 67 ~~~~~~~~~~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~ 122 (458)
T PRK14354 67 SEFALQEEQLGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHK 122 (458)
T ss_pred cEEEEcCCCCCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcC
Confidence 556655666787777777766543 47899999998 578889999999886543
No 384
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=31.35 E-value=53 Score=29.96 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=37.0
Q ss_pred cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEee
Q psy8674 16 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 74 (439)
Q Consensus 16 ~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~ 74 (439)
.|++++.+.|. + ..|=.-...-+.+-|+.+|+|+.++.+.|+...+..++.+.-+|+
T Consensus 53 pV~~~~~~~ns-L-nnRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVG 109 (247)
T PF09258_consen 53 PVRVVRSSRNS-L-NNRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVG 109 (247)
T ss_dssp -EEEEEESSHH-G-GGGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEE
T ss_pred eEEEEecCCcc-H-HhcCcCccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeC
Confidence 46666544431 0 122223345578999999999999999999999999888877775
No 385
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=31.30 E-value=1.2e+02 Score=29.15 Aligned_cols=52 Identities=6% Similarity=0.098 Sum_probs=32.7
Q ss_pred eEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHh-------CCcEEEecccceecccc
Q psy8674 135 GLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMC-------GGSIEWVPCSRIVSLIR 188 (439)
Q Consensus 135 ~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~-------G~~i~~~p~~~v~H~~~ 188 (439)
-.|++.|++|.+|-..-+.|-.| +|+.+-+-|+.. ..++.+.-..+|+|+..
T Consensus 234 mGmAfNRs~W~kI~~ca~~FC~y--DDYNWDwSL~~ls~~cl~~~~kvL~~~~PRV~HiGd 292 (356)
T PF05060_consen 234 MGMAFNRSTWNKIKSCADEFCTY--DDYNWDWSLQHLSQRCLPSPLKVLVPKGPRVFHIGD 292 (356)
T ss_pred ceeEecHHHHHHHHHHHHHhCCC--CCCCchHHHHHHHhhccCCccEEEEEccCcEEEccc
Confidence 46899999999998766666443 555444444333 34455445566777643
No 386
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=30.87 E-value=4.4e+02 Score=24.48 Aligned_cols=142 Identities=17% Similarity=0.094 Sum_probs=83.2
Q ss_pred CCcEEEEEecCCCChhHHHHhhhhhcc-CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccC
Q psy8674 14 NGKVRLIRNTEREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYE 92 (439)
Q Consensus 14 ~~~i~~i~~~~n~G~a~arN~G~~~A~-g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 92 (439)
..+|+++.-++..|+|.|.=.|-.... .+++++| .|-++.. -|..+++.+++...++......+-+...+
T Consensus 72 gv~itY~~Q~~p~GlA~Av~~a~~fv~~~~f~l~L-GDNi~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rf------- 142 (286)
T COG1209 72 GVDITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYL-GDNIFQD-GLSELLEHFAEEGSGATILLYEVDDPSRY------- 142 (286)
T ss_pred CcceEEEecCCCCcHHHHHHHHHhhcCCCceEEEe-cCceecc-ChHHHHHHHhccCCCcEEEEEEcCCcccc-------
Confidence 358999999999999999999999998 5555555 5555555 57777777776433333222222222221
Q ss_pred CCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhC
Q psy8674 93 PDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCG 172 (439)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G 172 (439)
|.....-..+-..+ ...+..| ++.+...+..+++.++|+.+-..-++-..- .|=+|..-.+.+.|
T Consensus 143 ------GV~e~d~~~~v~~l-------~EKP~~P-~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGE-lEITd~i~~~i~~G 207 (286)
T COG1209 143 ------GVVEFDEDGKVIGL-------EEKPKEP-KSNLAVTGLYFYDPSVFEAIKQIKPSARGE-LEITDAIDLYIEKG 207 (286)
T ss_pred ------eEEEEcCCCcEEEe-------EECCCCC-CCceeEEEEEEeChHHHHHHHcCCCCCCCc-eEehHHHHHHHHcC
Confidence 11101000000000 0011111 233455668899999999987765544211 36788888999999
Q ss_pred CcEEEec
Q psy8674 173 GSIEWVP 179 (439)
Q Consensus 173 ~~i~~~p 179 (439)
.++....
T Consensus 208 ~~~~~~~ 214 (286)
T COG1209 208 YLVVAIL 214 (286)
T ss_pred cEEEEEE
Confidence 9865543
No 387
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=30.05 E-value=56 Score=30.72 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=27.0
Q ss_pred ccCcEEEEecCCcccCCCchHHHHHHHhcC
Q psy8674 39 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSD 68 (439)
Q Consensus 39 A~g~~i~flD~D~~~~~~~l~~l~~~~~~~ 68 (439)
.+|+|++.|-+|++..|+|+..+...+...
T Consensus 168 ~~~~YyL~LEDDVia~~~f~~~i~~~v~~~ 197 (297)
T PF04666_consen 168 NLGDYYLQLEDDVIAAPGFLSRIKRFVEAW 197 (297)
T ss_pred hcCCeEEEecCCeEechhHHHHHHHHHHHh
Confidence 368999999999999999999999998754
No 388
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=27.35 E-value=4.3e+02 Score=26.30 Aligned_cols=101 Identities=11% Similarity=0.096 Sum_probs=58.4
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC------CcEEEEEcCC-------CC
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN------GKVRLIRNTE-------RE 340 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~------~~v~~i~~~~-------~~ 340 (439)
.+|.-+.. ..|...|+.+.+.... +|+|+-....+ .+.+.+. +.+. +.+.++.... ..
T Consensus 28 Llpi~gk~-plI~~~L~~l~~~Gi~----~vivv~~~~~~-~i~~~l~---~~~~~~~~~~g~~~i~~~~~~~~~~~~~l 98 (429)
T PRK02862 28 AVPLAGKY-RLIDIPISNCINSGIN----KIYVLTQFNSA-SLNRHIS---QTYNFDGFSGGFVEVLAAQQTPENPSWFQ 98 (429)
T ss_pred eeEECCee-EEeHHHHHHHHHCCCC----EEEEEecCCHH-HHHHHHh---cCcCccccCCCEEEEeCCcccCCCCcccc
Confidence 66777774 5777788887764322 67776554322 2221222 1110 1122221111 15
Q ss_pred CHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 341 GLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 341 g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
|.+.|+..+..... .+.++++.+|..+ ...+..+++.......
T Consensus 99 GTa~al~~a~~~l~~~~~~~~lVl~gD~l~-~~dl~~ll~~h~~~~a 144 (429)
T PRK02862 99 GTADAVRKYLWHFQEWDVDEYLILSGDQLY-RMDYRLFVQHHRETGA 144 (429)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEecCCEEE-eCCHHHHHHHHHHcCC
Confidence 78888888876653 3688999999865 4568888887655443
No 389
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=27.06 E-value=1.9e+02 Score=25.62 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=37.8
Q ss_pred cEEEEEecCCCChhHHHHhhhhhc-cCcEEEEecCCcc-cCCCchHHHHHHHhcCC
Q psy8674 16 KVRLIRNTEREGLIRTRSRGAKES-RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR 69 (439)
Q Consensus 16 ~i~~i~~~~n~G~a~arN~G~~~A-~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~ 69 (439)
.+.++... .+.+.+.-.|+... +.++++++|+|.- ++++.++.+++.+.+.+
T Consensus 72 ~~~~~~~~--~~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (227)
T PRK00155 72 KVTVVAGG--AERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETG 125 (227)
T ss_pred ceEEeCCc--chHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 34455422 24566666777664 5789999999997 69999999999887654
No 390
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=26.73 E-value=3.6e+02 Score=22.16 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=9.3
Q ss_pred ceEEEEeCCCChh
Q psy8674 302 EEIILVDDFSSKA 314 (439)
Q Consensus 302 ~eiivvdd~s~d~ 314 (439)
..||++-||-...
T Consensus 101 ~~iillTDG~~~~ 113 (171)
T cd01461 101 PQIILLTDGEVTN 113 (171)
T ss_pred cEEEEEeCCCCCC
Confidence 3788888887544
No 391
>PF11181 YflT: Heat induced stress protein YflT
Probab=26.30 E-value=1.1e+02 Score=23.40 Aligned_cols=33 Identities=6% Similarity=0.183 Sum_probs=27.5
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeC
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDD 309 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd 309 (439)
+|-+|+.. +.+...|+.|..+.|..- +|.|+-.
T Consensus 2 ~Igv~~~~-~E~~~~I~~L~~~Gy~~d--dI~Vva~ 34 (103)
T PF11181_consen 2 VIGVYDNE-EEALSAIEELKAQGYSED--DIYVVAK 34 (103)
T ss_pred EEEEECCH-HHHHHHHHHHHHcCCCcc--cEEEEEc
Confidence 46677777 899999999999999876 8888864
No 392
>KOG1111|consensus
Probab=26.16 E-value=2.1e+02 Score=27.67 Aligned_cols=59 Identities=17% Similarity=0.418 Sum_probs=41.4
Q ss_pred eEEEEE---ecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEE
Q psy8674 271 ASVILV---FHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLI 334 (439)
Q Consensus 271 vsiiip---~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i 334 (439)
++|++. +||...+.|.+.|.++.++. ++. ++||+-||+.....++.++++.- ..++.++
T Consensus 196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~-p~v--rfii~GDGPk~i~lee~lEk~~l--~~rV~~l 257 (426)
T KOG1111|consen 196 ITIVVASRLVYRKGIDLLLEIIPSVCDKH-PEV--RFIIIGDGPKRIDLEEMLEKLFL--QDRVVML 257 (426)
T ss_pred eEEEEEeeeeeccchHHHHHHHHHHHhcC-CCe--eEEEecCCcccchHHHHHHHhhc--cCceEEe
Confidence 444443 46776688888899888765 555 99999999987777767776532 2356665
No 393
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=26.11 E-value=4.5e+02 Score=25.35 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc-CCCCCHHHHHHHHHhhcCCCEEEEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN-TEREGLIRTRSRGAKESRGEVIVFL 361 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~-~~~~g~~~a~n~g~~~a~~d~i~~l 361 (439)
..+...++.+.... .+|+|+-+.+.. . .. .. ..+.++.. ....|...++-.|++.+..+.++++
T Consensus 187 pLl~~~ie~l~~~~-----~~ViVv~~~~~~---~----~~--~~-~~v~~I~D~~~~~GPlagI~aaL~~~~~~~~lVl 251 (346)
T PRK14500 187 PHAQYLYDLLAKYC-----EQVFLSARPSQW---Q----GT--PL-ENLPTLPDRGESVGPISGILTALQSYPGVNWLVV 251 (346)
T ss_pred cHHHHHHHHHHhhC-----CEEEEEeCchHh---h----hc--cc-cCCeEEeCCCCCCChHHHHHHHHHhCCCCCEEEE
Confidence 56777776655431 167776543210 1 00 01 13444433 3346999999999998776667889
Q ss_pred cCCCc-cCCCChHHHHHhhhc
Q psy8674 362 DAHCE-VGLNWLPPLLAPIYS 381 (439)
Q Consensus 362 d~D~~-~~~~~l~~l~~~~~~ 381 (439)
-.|.- ++++.+..|++.+..
T Consensus 252 ~cDmP~l~~~~l~~L~~~~~~ 272 (346)
T PRK14500 252 ACDLAYLNSETVEKLLAHYRQ 272 (346)
T ss_pred ECCcCCCCHHHHHHHHHhhhc
Confidence 99988 478999999987753
No 394
>KOG2791|consensus
Probab=25.20 E-value=3.3e+02 Score=26.04 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=24.6
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHhcCCcC
Q psy8674 270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQ 299 (439)
Q Consensus 270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~ 299 (439)
++-+||-++|++ ..|+-+++|+.+....+
T Consensus 118 ~~vlV~qVHnRp-~Ylr~lveSlrk~kGI~ 146 (455)
T KOG2791|consen 118 RVVLVLQVHNRP-QYLRVLVESLRKVKGIS 146 (455)
T ss_pred eEEEEEEEcCcH-HHHHHHHHHHHhccCcc
Confidence 577889999999 99999999999765443
No 395
>PF15224 SCRG1: Scrapie-responsive protein 1
Probab=23.42 E-value=57 Score=22.64 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=10.5
Q ss_pred CCceEEEEEecCC
Q psy8674 268 LPKASVILVFHNE 280 (439)
Q Consensus 268 ~p~vsiiip~~n~ 280 (439)
-|+||.|||+-|+
T Consensus 66 GPkiSFVIPCN~~ 78 (78)
T PF15224_consen 66 GPKISFVIPCNNH 78 (78)
T ss_pred CCceeEEEeCCCC
Confidence 4789999998763
No 396
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=23.35 E-value=2.4e+02 Score=28.75 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=49.2
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCH-HHHHHHHHhh------cCCCEEEEEcCCCccCCCChHHHH
Q psy8674 304 IILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGL-IRTRSRGAKE------SRGEVIVFLDAHCEVGLNWLPPLL 376 (439)
Q Consensus 304 iivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~-~~a~n~g~~~------a~~d~i~~ld~D~~~~~~~l~~l~ 376 (439)
||||.||.-...-.+.+++++.. + ++ -+|.|+ -+|.-.|+.. ...|-++++++-+.-+-.-++.+.
T Consensus 1 iv~VsN~~l~~~~~~~L~~~~~~----v-i~--R~N~GyDfgayk~gl~~~g~~~L~~~d~lil~NDS~~GP~~~l~~~f 73 (498)
T PF05045_consen 1 IVFVSNSPLSEEDREKLKDLCDK----V-IQ--RENEGYDFGAYKDGLEHLGWERLKDYDELILMNDSCFGPLFPLSEMF 73 (498)
T ss_pred CEEEECCCCCHHHHHHHHHHHHH----h-EE--eccCCcCHHHHHHHHHHcCchhhcCCCeEEEECCEEEeeCccHHHHH
Confidence 46777776443323355554422 2 33 345554 3566667655 347889999888887766699999
Q ss_pred HhhhcCCCEEEE
Q psy8674 377 APIYSDRKIMTV 388 (439)
Q Consensus 377 ~~~~~~~~~~v~ 388 (439)
+.++..+.++.+
T Consensus 74 ~~~~~~~~DfwG 85 (498)
T PF05045_consen 74 ERMEARDVDFWG 85 (498)
T ss_pred HHhccCCCeEEe
Confidence 999877655554
No 397
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=23.13 E-value=3.9e+02 Score=25.94 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=52.5
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCCh-----h-hHHHHHHHHHHHcCCcEEEEEcCC--CCCH---
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSK-----A-DLDQKLEDYIQRFNGKVRLIRNTE--REGL--- 342 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d-----~-t~~~~~~~~~~~~~~~v~~i~~~~--~~g~--- 342 (439)
++...||- +.|+--|..|... ....|||+...|- + +..+..+.+ +.+..++.++..+. ..|.
T Consensus 84 ~~~f~~El-DlLeiRl~eL~~v-----VD~FVIvEs~~Tf~G~~KpL~f~~~~~~f-~~~~~KIiy~~l~~~~~~g~~~~ 156 (356)
T PF04724_consen 84 CFLFNNEL-DLLEIRLNELYDV-----VDYFVIVESNRTFTGKPKPLYFAENKERF-AFFHDKIIYVTLDDPPEKGRKDP 156 (356)
T ss_pred EEEeCChH-HHHHHHHHHhhCc-----ceEEEEEEECCCcCCCCCCccHHHHHHHH-HhhhcceEEEEecCcCCCCCCch
Confidence 44445665 8888777776542 2367777754431 1 111111222 22233566554432 2222
Q ss_pred ----HHHHHHH---H---hhcCCCEEEEEcCCCccCCCChHHHHH
Q psy8674 343 ----IRTRSRG---A---KESRGEVIVFLDAHCEVGLNWLPPLLA 377 (439)
Q Consensus 343 ----~~a~n~g---~---~~a~~d~i~~ld~D~~~~~~~l~~l~~ 377 (439)
...+|.- + ....+|+|++-|.|.++.++.|..|-.
T Consensus 157 w~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~~l~~Lr~ 201 (356)
T PF04724_consen 157 WDRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPETLKFLRW 201 (356)
T ss_pred hHHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHHHHHHHHh
Confidence 2233322 1 223589999999999999988877643
No 398
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=22.65 E-value=2.9e+02 Score=23.72 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=6.2
Q ss_pred CCEEEEEcCC
Q psy8674 355 GEVIVFLDAH 364 (439)
Q Consensus 355 ~d~i~~ld~D 364 (439)
-.+|+|+|+|
T Consensus 48 rgVIIfTDpD 57 (174)
T TIGR00334 48 QGVIILTDPD 57 (174)
T ss_pred CCEEEEeCCC
Confidence 4566666666
No 399
>KOG1971|consensus
Probab=22.11 E-value=1.4e+02 Score=29.21 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=44.4
Q ss_pred HHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCccc-CCCchHHHHHHHhcC
Q psy8674 6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEV-GLNWLPPLLAPIYSD 68 (439)
Q Consensus 6 l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~-~~~~l~~l~~~~~~~ 68 (439)
+.+....+.+. +++.-.....++-|||.+++..+ + .+.|+|..+ .|+.+..+.....+-
T Consensus 144 ~~~~~~e~~p~-~~v~~~~~~~~~ea~~~evE~~r--~-~~~dad~~i~~P~~~~~li~~~k~~ 203 (415)
T KOG1971|consen 144 FRRHGSEYSPG-KFVFPMFQPDFSEARLMEVEHFR--K-FSVDADFVITRPNTLRNLIVLNKEF 203 (415)
T ss_pred HHHhccccCCe-eEEeeccCccHHHHHHHHHHHhh--h-cccccceeccCChhHHHHHHHhhhc
Confidence 33333334334 66666788999999999999999 4 888999987 799888887776643
No 400
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=22.07 E-value=3.5e+02 Score=29.05 Aligned_cols=85 Identities=20% Similarity=0.357 Sum_probs=45.5
Q ss_pred HHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC---CcEEEEEcCCCCCHHHHHHHHHhh--cCCCEEEEEcC
Q psy8674 289 VHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN---GKVRLIRNTEREGLIRTRSRGAKE--SRGEVIVFLDA 363 (439)
Q Consensus 289 l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~---~~v~~i~~~~~~g~~~a~n~g~~~--a~~d~i~~ld~ 363 (439)
|+++..+..+.- =||++-....|.+. .+.++++... .++..+......+. .| ...++. .+|.|+++-+.
T Consensus 106 l~~~~~~s~~~~--Pil~~~s~g~Dp~~--~i~~lA~~~~~~~~~~~~islG~~~~~-~a-~~~l~~a~~~G~Wv~L~N~ 179 (707)
T PF03028_consen 106 LESIYEESSPTT--PILFILSPGSDPSS--EIEQLAKKKGFGNKKLQSISLGSGQGP-EA-EKALKEAAKEGHWVLLQNC 179 (707)
T ss_dssp HHHHHHCTTTTC---EEEEE-TT--THH--HHHHHHHCTT-----EEEEETTSHHHH-HH-HHHHHHHHHHTSEEEEETG
T ss_pred HHHHHHhcCCCC--ceEEEeCCCCChHH--HHHHHHHHHhhhhhheeecCCCCchHH-HH-HHHHHHHhcCCeEEEcccc
Confidence 444444443332 34444443345543 5677777654 45677765444333 22 334443 34999999865
Q ss_pred CCccCCCChHHHHHhhhc
Q psy8674 364 HCEVGLNWLPPLLAPIYS 381 (439)
Q Consensus 364 D~~~~~~~l~~l~~~~~~ 381 (439)
+ +.+.|+..|-+.+..
T Consensus 180 H--L~~~wl~~Le~~l~~ 195 (707)
T PF03028_consen 180 H--LAPSWLPQLEKKLES 195 (707)
T ss_dssp G--GGCCCHHCHHHHHHC
T ss_pred h--hHHHHHHHHHHHHhc
Confidence 5 457898887776654
No 401
>PRK10122 GalU regulator GalF; Provisional
Probab=22.06 E-value=2.6e+02 Score=26.19 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=37.8
Q ss_pred cEEEEEecCCCChhHHHHhhhhhcc-CcEEEEecCCcccCCC-------chHHHHHHHhcCCCe
Q psy8674 16 KVRLIRNTEREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLN-------WLPPLLAPIYSDRKI 71 (439)
Q Consensus 16 ~i~~i~~~~n~G~a~arN~G~~~A~-g~~i~flD~D~~~~~~-------~l~~l~~~~~~~~~~ 71 (439)
+|+++..++..|.+.|.=.+...-. .++++.+ +|+.+.++ -+..+++.+.+....
T Consensus 98 ~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~~~~~ 160 (297)
T PRK10122 98 TIMNVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred eEEEeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHHhCCc
Confidence 5677777778899888877766543 4565554 88877643 478888877655443
No 402
>KOG0780|consensus
Probab=21.97 E-value=2.8e+02 Score=27.20 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEE
Q psy8674 283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVF 360 (439)
Q Consensus 283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ 360 (439)
..|-+-+..+.+...|+ +||.|-|+|.-.++++..+.|.+..+..-.++..=....++.+--.+++..+..++++
T Consensus 199 ~sLfeEM~~v~~ai~Pd---~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaVaaTksPIiFI 273 (483)
T KOG0780|consen 199 ASLFEEMKQVSKAIKPD---EIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIFI 273 (483)
T ss_pred HHHHHHHHHHHhhcCCC---eEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCCceeeehhhhCCCEEEE
Confidence 44444445555555555 8888889998877777777777665432223322122223334444555555555554
No 403
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=21.77 E-value=78 Score=29.41 Aligned_cols=114 Identities=9% Similarity=0.069 Sum_probs=64.6
Q ss_pred CCceEEEEEec-CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHHH
Q psy8674 268 LPKASVILVFH-NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRT 345 (439)
Q Consensus 268 ~p~vsiiip~~-n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~a 345 (439)
.++.-+.+++- +.. +.+..++... ..+|. -+++.=||..|+--+ + ++. ...+.+..... ..-++.-
T Consensus 40 ~~k~Lla~~VG~kqk-~~vd~~v~Kf----~~nF~-i~LfhYDg~vd~w~~--~-~ws---~~aiHv~~~kqtKww~akr 107 (294)
T PF05212_consen 40 KPKYLLAMTVGIKQK-DNVDAIVKKF----SDNFD-IMLFHYDGRVDEWDD--F-EWS---DRAIHVSARKQTKWWFAKR 107 (294)
T ss_pred CCceEEEEEecHHHH-hhhhHHHhhh----ccCce-EEEEEecCCcCchhh--c-ccc---cceEEEEeccceEEeehhh
Confidence 34555666664 444 4445555444 34442 356667787765211 1 111 11233322111 1112221
Q ss_pred HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeee
Q psy8674 346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG 393 (439)
Q Consensus 346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~ 393 (439)
...-=-.+..|||.+.|.|..++.-.+.++++.+....-.+..|.++.
T Consensus 108 fLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~ 155 (294)
T PF05212_consen 108 FLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDP 155 (294)
T ss_pred hcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCC
Confidence 111112366899999999999999999999999998888777777664
No 404
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=21.60 E-value=1.8e+02 Score=28.05 Aligned_cols=100 Identities=14% Similarity=0.051 Sum_probs=51.6
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cCCc------EEEEEcCC-CC--C
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGK------VRLIRNTE-RE--G 341 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~------v~~i~~~~-~~--g 341 (439)
.+|+-|.. ..|...|+.+.++... +|+|+-+.-.++ .++++... ++.. ..++..++ .. |
T Consensus 27 LlpV~gk~-PlIe~~l~~L~~~Gi~----~I~iv~~~~~~~----~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg 97 (369)
T TIGR02092 27 SLPFGGRY-RLIDFPLSNMVNAGIR----NVFIFFKNKERQ----SLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEG 97 (369)
T ss_pred ccccCCee-eEEEEEhhhhhccCCC----EEEEEeCCCcHH----HHHHHHhCCCCCCcccccCcEEEEeccCCCCcccC
Confidence 45666663 3666777777765432 777776543321 22333321 1111 11222222 22 3
Q ss_pred HHHHHHHHHhhc---CCCEEEEEcCCCccCCCChHHHHHhhhcCC
Q psy8674 342 LIRTRSRGAKES---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 383 (439)
Q Consensus 342 ~~~a~n~g~~~a---~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~ 383 (439)
-+.+...+.... ..+.++++++|.... -.+..+++...+..
T Consensus 98 ~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~-~dl~~ll~~h~~~~ 141 (369)
T TIGR02092 98 GKRYFSQNLEFLKRSTSEYTVVLNSHMVCN-IDLKAVLKYHEETG 141 (369)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEECCCEEEe-cCHHHHHHHHHHcC
Confidence 333444444443 247899999998655 44777777554433
No 405
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=21.58 E-value=88 Score=27.63 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=19.8
Q ss_pred HHHHhhhhhccCcEEEEecCCccc-CCCc
Q psy8674 30 RTRSRGAKESRGEVIVFLDAHCEV-GLNW 57 (439)
Q Consensus 30 ~arN~G~~~A~g~~i~flD~D~~~-~~~~ 57 (439)
+=+..+--.-+-++|+|||+|+-| .|+-
T Consensus 31 RHCvva~~L~~~~~vlflDaDigVvNp~~ 59 (222)
T PF03314_consen 31 RHCVVAKILPEYDWVLFLDADIGVVNPNR 59 (222)
T ss_pred HHHHHHHHhccCCEEEEEcCCceeecCcc
Confidence 344455555578999999999975 5553
No 406
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=20.80 E-value=2.4e+02 Score=25.38 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=20.2
Q ss_pred HhhcCCCEEEEEcCCCccCCCChHHHHHh
Q psy8674 350 AKESRGEVIVFLDAHCEVGLNWLPPLLAP 378 (439)
Q Consensus 350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~ 378 (439)
.+....+-++++|+|..+..+ |..|.+.
T Consensus 85 ~~l~~~drvlylD~D~~v~~~-i~~Lf~~ 112 (240)
T cd02537 85 WNLTEYDKVVFLDADTLVLRN-IDELFDL 112 (240)
T ss_pred ccccccceEEEEeCCeeEccC-HHHHhCC
Confidence 334467899999999998764 5555554
No 407
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=20.76 E-value=4e+02 Score=24.82 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcC
Q psy8674 284 SLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363 (439)
Q Consensus 284 ~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~ 363 (439)
.+.+.|+.+.... ....||+|=+|+... +++.+.+..+..++++-...=.|.. .-...-.+.++++++.
T Consensus 76 ~~~~~l~~l~~~l----~~g~iv~Dv~S~K~~---v~~a~~~~~~~~~~~vg~HPM~G~~----~~~~lf~~~~~vltp~ 144 (279)
T COG0287 76 ATEEVLKELAPHL----KKGAIVTDVGSVKSS---VVEAMEKYLPGDVRFVGGHPMFGPE----ADAGLFENAVVVLTPS 144 (279)
T ss_pred HHHHHHHHhcccC----CCCCEEEecccccHH---HHHHHHHhccCCCeeEecCCCCCCc----ccccccCCCEEEEcCC
Confidence 3345555554422 236789999999765 5555554444334666544445543 1122335778888887
Q ss_pred CCccCCCChHHHHHhhhcCCCEEE
Q psy8674 364 HCEVGLNWLPPLLAPIYSDRKIMT 387 (439)
Q Consensus 364 D~~~~~~~l~~l~~~~~~~~~~~v 387 (439)
+..- ..|+..+.+.+..-...++
T Consensus 145 ~~~~-~~~~~~~~~~~~~~ga~~v 167 (279)
T COG0287 145 EGTE-KEWVEEVKRLWEALGARLV 167 (279)
T ss_pred CCCC-HHHHHHHHHHHHHcCCEEE
Confidence 7554 8899999999987554333
No 408
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=20.55 E-value=77 Score=30.23 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=26.9
Q ss_pred ChhHHHHhhhhhcc---CcEEEEecCCcccCCCchHHHHHHHh
Q psy8674 27 GLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIY 66 (439)
Q Consensus 27 G~a~arN~G~~~A~---g~~i~flD~D~~~~~~~l~~l~~~~~ 66 (439)
|.+-+.=+|+..|+ -+||-|+|+|..+| +.+.+.+..++
T Consensus 143 GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiP-GaV~EYvk~yA 184 (381)
T TIGR02460 143 GKGEGMLLGLLLAKAIGAEYVGFVDADNYFP-GAVNEYVKIYA 184 (381)
T ss_pred CcchHHHHHHHHHHHhCCceEeEeecccCCC-chHHHHHHHHH
Confidence 55566667766664 49999999999885 44555555444
No 409
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=20.55 E-value=7.6e+02 Score=24.54 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=54.6
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc--C-------CcEEEEEcC-------
Q psy8674 274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF--N-------GKVRLIRNT------- 337 (439)
Q Consensus 274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~-------~~v~~i~~~------- 337 (439)
.+|.-+.. ..|.-.|+++.+.... ||+|+-+... ..+.+.+. ..+ + ..+.+....
T Consensus 28 llpv~g~~-plId~~L~~l~~~Gi~----~i~iv~~~~~-~~i~~~l~---~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (436)
T PLN02241 28 AVPIGGNY-RLIDIPMSNCINSGIN----KIYVLTQFNS-ASLNRHLS---RAYNFGNGGNFGDGFVEVLAATQTPGEKG 98 (436)
T ss_pred ceEeCCcc-eEehHHHHHHHhCCCC----EEEEEeccCH-HHHHHHHh---ccCCCCCCcccCCCCEEEcCCcccCCCCc
Confidence 56666654 5677778887764432 6766655432 22222222 111 1 113332211
Q ss_pred CCCCHHHHHHHHHhhcC------CCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674 338 EREGLIRTRSRGAKESR------GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384 (439)
Q Consensus 338 ~~~g~~~a~n~g~~~a~------~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 384 (439)
...|.+.|+..++.... .+.++++.+|.... ..+..+++.......
T Consensus 99 ~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~-~dl~~ll~~h~~~~a 150 (436)
T PLN02241 99 WFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYR-MDYMDFVQKHRESGA 150 (436)
T ss_pred cccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEc-cCHHHHHHHHHHcCC
Confidence 23576777755543322 47889999999765 457777776654444
No 410
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=20.31 E-value=4e+02 Score=26.47 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhc-cC--cEEEEecCCccc-CCCchHHHHHHHhcCCCe
Q psy8674 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKES-RG--EVIVFLDAHCEV-GLNWLPPLLAPIYSDRKI 71 (439)
Q Consensus 4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A-~g--~~i~flD~D~~~-~~~~l~~l~~~~~~~~~~ 71 (439)
+.+++-+.+.+ .+.++.-++..|-+.|.-.+...- .+ ..++.|..|+-+ .++.|+.|++........
T Consensus 57 e~V~~~~~~~~-~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~ 127 (460)
T COG1207 57 EQVREALAERD-DVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAA 127 (460)
T ss_pred HHHHHHhcccc-CceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCc
Confidence 34455554443 477777788999999999998655 33 358889999975 899999888888754443
Done!