RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8674
(439 letters)
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest of
all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity for
glycosylation sites on acceptor proteins.
Length = 299
Score = 290 bits (745), Expect = 3e-96
Identities = 96/183 (52%), Positives = 130/183 (71%), Gaps = 4/183 (2%)
Query: 1 DLDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPP 60
+L LE+Y +++ KV+++R +REGLIR R GA+ + G+V+VFLD+HCEV + WL P
Sbjct: 44 ELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEP 103
Query: 61 LLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKR 120
LLA I +RK + P+ID ID T+E+R RG F+W + +K LPE E ++R
Sbjct: 104 LLARIAENRKTVVCPIIDVIDADTFEYRGSSGDA---RGGFDWSLHFKWLPLPEEE-RRR 159
Query: 121 KYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPC 180
+ + P +SPT AGGLFA+DR +FLELGGYD G+ +WGGEN ELSFK+W CGGSIE VPC
Sbjct: 160 ESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPC 219
Query: 181 SRI 183
SR+
Sbjct: 220 SRV 222
Score = 240 bits (615), Expect = 1e-76
Identities = 81/159 (50%), Positives = 111/159 (69%), Gaps = 3/159 (1%)
Query: 272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKV 331
SVI++FHNE S+L+RTVHS+I RTP + L+EIILVDDFS K +L LE+Y +++ KV
Sbjct: 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKV 60
Query: 332 RLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 391
+++R +REGLIR R GA+ + G+V+VFLD+HCEV + WL PLLA I +RK + P+I
Sbjct: 61 KVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPII 120
Query: 392 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 430
D ID T+E+R RG F+W + +K LPE E
Sbjct: 121 DVIDADTFEYRGSSGDA---RGGFDWSLHFKWLPLPEEE 156
>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse
family, transferring sugar from UDP-glucose,
UDP-N-acetyl- galactosamine, GDP-mannose or
CDP-abequose, to a range of substrates including
cellulose, dolichol phosphate and teichoic acids.
Length = 168
Score = 93.7 bits (233), Expect = 1e-22
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 5/155 (3%)
Query: 272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKV 331
SVI+ +NE L T+ S++ +T + EII+VDD S + E+Y + + +V
Sbjct: 1 SVIIPTYNEE-KYLEETLESLLNQTYKNF--EIIVVDD-GSTDGTVEIAEEYAKN-DPRV 55
Query: 332 RLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 391
R+IR E G R+ G K + G+ I FLDA EV +WL L+ + + + +
Sbjct: 56 RVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELLEKNGADIVIGSR 115
Query: 392 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENEL 426
I+ +T + + L
Sbjct: 116 VVINGETRLYGRALRFELLLLLGKLGARSLGLKVL 150
Score = 67.1 bits (164), Expect = 3e-13
Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 65
E+Y + + +VR+IR E G R+ G K + G+ I FLDA EV +WL L+ +
Sbjct: 45 AEEYAKN-DPRVRVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELL 103
Query: 66 YSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSE 125
+ + + I+ +T + + ++ L + +
Sbjct: 104 EKNGADIVIGSRVVINGETRLYG--------------RALRFELLLLLGKLGARSLGLKV 149
Query: 126 PYKSPTHAGGLFAMDRAFF 144
+ ++A +
Sbjct: 150 LFLIGSNALYRREVLEELL 168
>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A)
includes diverse families of glycosyl transferases with
a common GT-A type structural fold.
Glycosyltransferases (GTs) are enzymes that synthesize
oligosaccharides, polysaccharides, and glycoconjugates
by transferring the sugar moiety from an activated
nucleotide-sugar donor to an acceptor molecule, which
may be a growing oligosaccharide, a lipid, or a protein.
Based on the stereochemistry of the donor and acceptor
molecules, GTs are classified as either retaining or
inverting enzymes. To date, all GT structures adopt one
of two possible folds, termed GT-A fold and GT-B fold.
This hierarchy includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. The majority of the proteins in this
superfamily are Glycosyltransferase family 2 (GT-2)
proteins. But it also includes families GT-43, GT-6,
GT-8, GT13 and GT-7; which are evolutionarily related to
GT-2 and share structure similarities.
Length = 156
Score = 64.4 bits (157), Expect = 2e-12
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR 332
VI+ +NE L R + S++ +T + E+I+VDD S+ L + LE+Y ++ +V
Sbjct: 1 VIIPAYNEE-PYLERCLESLLAQTYPNF--EVIVVDDGSTDGTL-EILEEYAKKDP-RVI 55
Query: 333 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 385
+ N E +GL R+ G K +RGE I+FLDA + +WL L+A + +D +
Sbjct: 56 RVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEA 108
Score = 44.8 bits (106), Expect = 1e-05
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 63
+ LE+Y ++ +V + N E +GL R+ G K +RGE I+FLDA + +WL L+A
Sbjct: 42 EILEEYAKKDP-RVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVA 100
Query: 64 PIYSDRKI 71
+ +D +
Sbjct: 101 ELLADPEA 108
>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the
biosynthesis of succinoglycan. Succinoglycan
Biosynthesis Protein ExoA catalyzes the formation of a
beta-1,3 linkage of the second sugar (glucose) of the
succinoglycan with the galactose on the lipid carrie.
Succinoglycan is an acidic exopolysaccharide that is
important for invasion of the nodules. Succinoglycan is
a high-molecular-weight polymer composed of repeating
octasaccharide units. These units are synthesized on
membrane-bound isoprenoid lipid carriers, beginning with
galactose followed by seven glucose molecules, and
modified by the addition of acetate, succinate, and
pyruvate. ExoA is a membrane protein with a
transmembrance domain at c-terminus.
Length = 249
Score = 58.0 bits (141), Expect = 1e-09
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG 329
S+I+ NE + + S++ ++ + L EII+VD S+ + +++Y +
Sbjct: 1 FVSIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTRE-IVQEYAAKDP- 57
Query: 330 KVRLIRNTEREGLIRT--RSRGAKESRGEVIVFLDAHCEVGLNWL 372
++RLI N I++ + G + SRG++I+ +DAH +++
Sbjct: 58 RIRLIDN---PKRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKDYI 99
Score = 44.9 bits (107), Expect = 3e-05
Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 35/195 (17%)
Query: 6 LEDYIERFNGKVRLIRNTEREGLIRT--RSRGAKESRGEVIVFLDAHCEVGLNWLPPLL- 62
+++Y + ++RLI N I++ + G + SRG++I+ +DAH +++ L+
Sbjct: 49 VQEYAAKDP-RIRLIDN---PKRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVE 104
Query: 63 APIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKY 122
A + + P+ ++ +++ G Y
Sbjct: 105 ALKRTGADNVGGPME--TIGESKFQKAIAVAQSSPLGS-----------------GGSAY 145
Query: 123 NSEPYK----SPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWV 178
K H G A R F ++GG+D L+ E+ EL++++ G I
Sbjct: 146 RGGAVKIGYVDTVHHG---AYRREVFEKVGGFDESLVR--NEDAELNYRLRKAGYKIWLS 200
Query: 179 PCSRIVSLIRPVFKA 193
P R+ R K
Sbjct: 201 PDIRVYYYPRSTLKK 215
>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 291
Score = 55.1 bits (131), Expect = 2e-08
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 6/165 (3%)
Query: 267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR 326
+PK SV++ +NE L + S++ +T + EII+VDD S+ + +Y +
Sbjct: 1 MMPKVSVVIPTYNEE-EYLPEALESLLNQTYKDF--EIIVVDDGSTD-GTTEIAIEYGAK 56
Query: 327 FNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM 386
+ +V + N GL R+ G + +RG+ IVFLDA + L PL+A I
Sbjct: 57 -DVRVIRLINERNGGLGAARNAGLEYARGDYIVFLDAD-DQHPPELIPLVAAGGDGDYIA 114
Query: 387 TVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREA 431
+ D I + + + + + L R+A
Sbjct: 115 RLDDRDDIWLPRKLLSKLVKLLGNRLLGVLIPDGFGDLRLLVRDA 159
Score = 33.1 bits (74), Expect = 0.24
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 16 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 75
+V + N GL R+ G + +RG+ IVFLDA + L PL+A I +
Sbjct: 59 RVIRLINERNGGLGAARNAGLEYARGDYIVFLDAD-DQHPPELIPLVAAGGDGDYIARLD 117
Query: 76 VIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREA 117
D I + + + + + L R+A
Sbjct: 118 DRDDIWLPRKLLSKLVKLLGNRLLGVLIPDGFGDLRLLVRDA 159
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 55.7 bits (134), Expect = 2e-08
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 263 DYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED 322
D LPK SVI+ +NE L T+ S++ + +Y E+I+VDD S + + LE+
Sbjct: 48 DADKLLPKVSVIIPAYNEEPEVLEETLESLLSQDYPRY--EVIVVDD-GSTDETYEILEE 104
Query: 323 YIQRFNGKVRLIR-NTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 381
+ R+I + G + G K ++G+V+V LDA + L L++P
Sbjct: 105 LGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFED 164
Query: 382 DRKIMTV 388
V
Sbjct: 165 PPVGAVV 171
Score = 42.6 bits (100), Expect = 3e-04
Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 27/188 (14%)
Query: 4 KKLEDYIERFNGKVRLIR-NTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLL 62
+ LE+ + R+I + G + G K ++G+V+V LDA + L L+
Sbjct: 100 EILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELV 159
Query: 63 APIYSDRKIMTV--PVID-GIDYQTWEFRS-VYEPDHHYRGIFEWGMLYKENELPEREAK 118
+P V P I D R E +
Sbjct: 160 SPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGG---------- 209
Query: 119 KRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWV 178
+G A R+ E+GG+ + E+ +L+ ++ + G + +V
Sbjct: 210 ---------LISFLSGSSSAFRRSALEEVGGWLEDTI---TEDADLTLRLHLRGYRVVYV 257
Query: 179 PCSRIVSL 186
P + + +
Sbjct: 258 PEAIVWTE 265
>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase
superfamily. The cellulose synthase (CESA) superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members include cellulose synthase catalytic subunit,
chitin synthase, glucan biosynthesis protein and other
families of CESA-like proteins. Cellulose synthase
catalyzes the polymerization reaction of cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues in plants, most algae, some bacteria
and fungi, and even some animals. In bacteria, algae and
lower eukaryotes, there is a second unrelated type of
cellulose synthase (Type II), which produces acylated
cellulose, a derivative of cellulose. Chitin synthase
catalyzes the incorporation of GlcNAc from substrate
UDP-GlcNAc into chitin, which is a linear homopolymer of
beta-(1,4)-linked GlcNAc residues and Glucan
Biosynthesis protein catalyzes the elongation of
beta-1,2 polyglucose chains of Glucan.
Length = 180
Score = 51.5 bits (124), Expect = 9e-08
Identities = 30/113 (26%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR 332
+I+ +NE + + RT+ S++ + E+I+VDD S D + LE+ + +V
Sbjct: 1 IIVPAYNEE-AVIERTIESLLALDYPKL--EVIVVDD-GSTDDTLEILEELAALYIRRVL 56
Query: 333 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 385
++R+ E G + G + ++G+++V LDA + + L L+ P ++D K+
Sbjct: 57 VVRDKENGGKAGALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKV 109
Score = 29.9 bits (68), Expect = 1.6
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 8 DYIERFNGKVRLIRNTEREGLIRTRSR----GAKESRGEVIVFLDAHCEVGLNWLPPLLA 63
+ +E R+ ++ G + ++G+++V LDA + + L L+
Sbjct: 42 EILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKGDIVVVLDADTILEPDALKRLVV 101
Query: 64 PIYSDRKI 71
P ++D K+
Sbjct: 102 PFFADPKV 109
>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase.
Members of this protein family are putative
glycosyltransferases, members of pfam00535 (glycosyl
transferase family 2). Members appear mostly in the
Actinobacteria, where they appear to be part of a system
for converting a precursor peptide (TIGR03969) into a
novel redox carrier designated mycofactocin. A radical
SAM enzyme, TIGR03962, is a proposed to be a key
maturase for mycofactocin.
Length = 467
Score = 52.5 bits (126), Expect = 3e-07
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 17 VRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV 76
VR+IR+ R+G R+ GA+ +R E + F D+ WL LLA + P
Sbjct: 131 VRVIRHPRRQGPAAARNAGARAARTEFVAFTDSDVVPRPGWLRALLAHFDDPGVALVAPR 190
Query: 77 IDGID-YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGG 135
+ + T R YE R + G EA R Y P+ A
Sbjct: 191 VVALPAEDTRLAR--YE---AVRSSLDLG---------PEEAVVRPRGPVSY-VPSAA-- 233
Query: 136 LFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIV 184
+ R LE+GG+D L V GE+ +L +++ GG + + P + +
Sbjct: 234 -LLVRRRALLEVGGFDERLEV--GEDVDLCWRLCEAGGRVRYEPAAVVA 279
Score = 49.8 bits (119), Expect = 2e-06
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 10/159 (6%)
Query: 221 PEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNE 280
P A R G G + ETS + R + D + + P +V++ N
Sbjct: 29 PAAARLLGGGRGGGLEVRDETS--AALLRRLLDSGVVHPR-PALLPSPPSVTVVVPVRNR 85
Query: 281 GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTER 339
+ L R + +++ + E+I+VDD S + R VR+IR+ R
Sbjct: 86 P-AGLARLLAALLALDYPRDRLEVIVVDDGSEDP-----VPTRAARGARLPVRVIRHPRR 139
Query: 340 EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAP 378
+G R+ GA+ +R E + F D+ WL LLA
Sbjct: 140 QGPAAARNAGARAARTEFVAFTDSDVVPRPGWLRALLAH 178
>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 166
Score = 49.1 bits (118), Expect = 6e-07
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR 332
+I+V +N L + S++ +T + E+I+VD+ S+ ++ ++ +VR
Sbjct: 1 IIIVNYN-SLEYLKACLDSLLAQTYPDF--EVIVVDNASTDGSVE-----LLRELFPEVR 52
Query: 333 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 385
LIRN E G ++G +E++G+ ++ L+ V L LL D +
Sbjct: 53 LIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDV 105
Score = 41.0 bits (97), Expect = 3e-04
Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 55/177 (31%)
Query: 8 DYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 67
+ + +VRLIRN E G ++G +E++G+ ++ L+ V L LL
Sbjct: 42 ELLRELFPEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQ 101
Query: 68 DRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPY 127
D + G++
Sbjct: 102 DP--------------------------------DVGIV--------------------- 108
Query: 128 KSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIV 184
P +G + R F E+GG+D ++ E+ +L + + G + +VP + I
Sbjct: 109 -GPKVSGAFLLVRREVFEEVGGFDEDFFLYY-EDVDLCLRARLAGYRVLYVPQAVIY 163
>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 229
Score = 49.2 bits (118), Expect = 9e-07
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGK-- 330
V++ NE +L R + S+ + E+ILVDD S+ D ++ K
Sbjct: 1 VVIAARNEA-ENLPRLLQSLSALDYPKEKFEVILVDDHST----DGT-VQILEFAAAKPN 54
Query: 331 --VRLIRNTEREG-----LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 379
++++ N+ + T K ++G+ IV DA C V NWL +A I
Sbjct: 55 FQLKILNNSRVSISGKKNALTT---AIKAAKGDWIVTTDADCVVPSNWLLTFVAFI 107
Score = 33.4 bits (77), Expect = 0.15
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 35 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 65
K ++G+ IV DA C V NWL +A I
Sbjct: 77 AIKAAKGDWIVTTDADCVVPSNWLLTFVAFI 107
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 48.9 bits (117), Expect = 2e-06
Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 25/171 (14%)
Query: 3 DKKLEDYIERFNGKVRLIRNTERE--GLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPP 60
K+L+ I + + T ++ + R+RGA+ S + I FLD C + + L
Sbjct: 49 AKELKKIIAKNGAINYISHKTHKDLFSPAKARNRGAEYSSSDFIFFLDVDCLISPDTLEK 108
Query: 61 LLAPIYSDRKI----MTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 116
++ + + +P + + F S ++ I E
Sbjct: 109 IIKHFQELQTNPNAFLALPCLYLSKEGSEIFLSDFKYLLREE-ILE-------------- 153
Query: 117 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFK 167
+ A ++R FFL++GG+D GGE+FEL ++
Sbjct: 154 ----DAITGKSTFFALASSCILINRDFFLKIGGFDENFRGHGGEDFELLYR 200
Score = 41.6 bits (98), Expect = 5e-04
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 272 SVIL-VFHNEGFSSLMRTVHSIIKRT---PAQYLEEIILVDDFSSKADLDQKLEDYIQRF 327
SVI+ V+ + +++ + S + R + EII+VD S + ++L+ I +
Sbjct: 1 SVIIPVYLSLRTRDILKRLQSCLNRLSYFLSDPDVEIIVVDGDSPLSF-AKELKKIIAKN 59
Query: 328 NGKVRLIRNTERE--GLIRTRSRGAKESRGEVIVFLDAHC 365
+ T ++ + R+RGA+ S + I FLD C
Sbjct: 60 GAINYISHKTHKDLFSPAKARNRGAEYSSSDFIFFLDVDC 99
>gnl|CDD|217196 pfam02709, Glyco_transf_7C, N-terminal domain of
galactosyltransferase. This is the N-terminal domain of
a family of galactosyltransferases from a wide range of
Metazoa with three related galactosyltransferases
activities, all three of which are possessed by one
sequence in some cases. EC:2.4.1.90, N-acetyllactosamine
synthase; EC:2.4.1.38,
Beta-N-acetylglucosaminyl-glycopeptide beta-1,4-
galactosyltransferase; and EC:2.4.1.22 Lactose synthase.
Note that N-acetyllactosamine synthase is a component of
Lactose synthase along with alpha-lactalbumin, in the
absence of alpha-lactalbumin EC:2.4.1.90 is the
catalyzed reaction.
Length = 78
Score = 44.1 bits (105), Expect = 4e-06
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 127 YKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIV 184
+ GG+ A + FL++ G+ WGGE+ +L ++ + G IE +
Sbjct: 14 LPYKGYFGGVLAFSKEDFLKVNGFSNNFWGWGGEDDDLYARLLLAGLKIERPKFAIGR 71
>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 229
Score = 47.3 bits (113), Expect = 4e-06
Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 28/171 (16%)
Query: 14 NGKVRLIRNTEREGLIRTRSRGAKE----SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 69
+ +V ++R G ++R E + +++V LDA V + L LL S
Sbjct: 57 DVRVHVVRRPRPPG-PTGKARALNEALRAIKSDLVVLLDADSVVDPDTLRRLLPFFLSKG 115
Query: 70 KIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGML-YKENELPEREAKKRKYNSEPYK 128
+ + Q F + + L + L ++
Sbjct: 116 -------VGAV--QGPVF-----VLNLRTAVAPLYALEFALRHLRFMALRRA------LG 155
Query: 129 SPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVP 179
AG R+ E+GG+DPG L+ E+ EL ++ G +VP
Sbjct: 156 VAPLAGSGSLFRRSVLEEIGGFDPGFLLG--EDKELGLRLRRAGWRTAYVP 204
Score = 33.1 bits (76), Expect = 0.18
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF- 327
P+ +V++ NE L RT+ SI+ + + E+I+V D S LD + +
Sbjct: 1 PRVAVVVPTWNED-KVLGRTLRSILAQDYPRL--EVIVVVDGSDDETLD-VARELAAAYP 56
Query: 328 NGKVRLIRNTEREGLIRTRSRGAKE----SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 383
+ +V ++R G ++R E + +++V LDA V + L LL S
Sbjct: 57 DVRVHVVRRPRPPG-PTGKARALNEALRAIKSDLVVLLDADSVVDPDTLRRLLPFFLSKG 115
>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member
of the Glycosyltransferase 2 superfamily. DPM1 is the
catalytic subunit of eukaryotic dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. In higher eukaryotes,the enzyme has three
subunits, DPM1, DPM2 and DPM3. DPM is synthesized from
dolichol phosphate and GDP-Man on the cytosolic surface
of the ER membrane by DPM synthase and then is flipped
onto the luminal side and used as a donor substrate. In
lower eukaryotes, such as Saccharomyces cerevisiae and
Trypanosoma brucei, DPM synthase consists of a single
component (Dpm1p and TbDpm1, respectively) that
possesses one predicted transmembrane region near the C
terminus for anchoring to the ER membrane. In contrast,
the Dpm1 homologues of higher eukaryotes, namely fission
yeast, fungi, and animals, have no transmembrane region,
suggesting the existence of adapter molecules for
membrane anchoring. This family also includes bacteria
and archaea DPM1_like enzymes. However, the enzyme
structure and mechanism of function are not well
understood. The UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate. This protein family belongs to
Glycosyltransferase 2 superfamily.
Length = 185
Score = 46.0 bits (110), Expect = 7e-06
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD---QKLEDYIQRFNG 329
V++ +NE ++ V ++ Y EII+VDD S+ D + + R
Sbjct: 1 VVIPAYNEE-ENIPELVERLLAVLEEGYDYEIIVVDDGST----DGTAEIARELAAR-VP 54
Query: 330 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
+VR+IR + G G K +RG+++V +DA
Sbjct: 55 RVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDA 88
Score = 31.0 bits (71), Expect = 0.67
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 49
+ + R +VR+IR + G G K +RG+++V +DA
Sbjct: 44 EIARELAAR-VPRVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDA 88
>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function
prediction only].
Length = 305
Score = 46.3 bits (110), Expect = 1e-05
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 10/149 (6%)
Query: 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN 328
PK S+I+V +N G L+ + S+ +T + I++VD+ S+ D LE RF
Sbjct: 3 PKISIIIVTYNRG-EDLVECLASLAAQTY--PDDVIVVVDNGST----DGSLEALKARFF 55
Query: 329 GKVRLIRNTEREGLIRTRSRGAKESRGEV---IVFLDAHCEVGLNWLPPLLAPIYSDRKI 385
VRLI N E G +RG K + + ++ L+ V + L LL D
Sbjct: 56 PNVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAA 115
Query: 386 MTVPVIDGIDYQTWEFRSVYEPDHHYRGI 414
V + ++ G
Sbjct: 116 GVVGPLIRNYDESLYIDRRGGESDGLTGG 144
Score = 45.9 bits (109), Expect = 2e-05
Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 13/185 (7%)
Query: 3 DKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEV---IVFLDAHCEVGLNWLP 59
D LE RF VRLI N E G +RG K + + ++ L+ V + L
Sbjct: 44 DGSLEALKARFFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLE 103
Query: 60 PLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKK 119
LL D V + ++ RG G+ P E
Sbjct: 104 ELLKAAEEDPAAGVVGPLIRNYDESLYI--------DRRGGESDGLTGGWRASPLLE-IA 154
Query: 120 RKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVP 179
+S + +G + R F ++GG+D ++ E+ +L + G I +VP
Sbjct: 155 PDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIY-YEDVDLCLRARKAGYKIYYVP 213
Query: 180 CSRIV 184
+ I
Sbjct: 214 DAIIY 218
>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked
glycosylation. UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate.
Length = 211
Score = 45.3 bits (108), Expect = 2e-05
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 303 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 362
EII+VDD SK + ++ +R++ + G G +RG+ I+F D
Sbjct: 32 EIIVVDD-GSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFAD 90
Query: 363 A 363
A
Sbjct: 91 A 91
Score = 33.7 bits (78), Expect = 0.11
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 49
+ + +R++ + G G +RG+ I+F DA
Sbjct: 46 EVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFADA 91
>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar
to eukaryotic DPM1. Proteins similar to eukaryotic
DPM1, including enzymes from bacteria and archaea; DPM1
is the catalytic subunit of eukaryotic
dolichol-phosphate mannose (DPM) synthase. DPM synthase
is required for synthesis of the
glycosylphosphatidylinositol (GPI) anchor, N-glycan
precursor, protein O-mannose, and C-mannose. In higher
eukaryotes,the enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. In lower eukaryotes, such
as Saccharomyces cerevisiae and Trypanosoma brucei, DPM
synthase consists of a single component (Dpm1p and
TbDpm1, respectively) that possesses one predicted
transmembrane region near the C terminus for anchoring
to the ER membrane. In contrast, the Dpm1 homologues of
higher eukaryotes, namely fission yeast, fungi, and
animals, have no transmembrane region, suggesting the
existence of adapter molecules for membrane anchoring.
This family also includes bacteria and archaea DPM1_like
enzymes. However, the enzyme structure and mechanism of
function are not well understood. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 224
Score = 41.0 bits (97), Expect = 5e-04
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 303 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 362
EII+VDD S D ++ + + +VRLI + GL G K +RG+VIV +D
Sbjct: 29 EIIVVDDNS--PDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMD 86
Query: 363 A 363
A
Sbjct: 87 A 87
Score = 32.9 bits (76), Expect = 0.24
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 14 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 49
+VRLI + GL G K +RG+VIV +DA
Sbjct: 52 YPRVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDA 87
>gnl|CDD|133027 cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins
are required for O-antigen biosynthesis. The rfbC gene
encodes a predicted protein of 1,276 amino acids, which
is required for O-antigen biosynthesis in Myxococcus
xanthus. It is a subfamily of Glycosyltransferase Family
GT2, which includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. These are enzymes that catalyze the
transfer of sugar moieties from activated donor
molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 202
Score = 38.3 bits (90), Expect = 0.003
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLE--EIILVDDFSSKADLDQKLEDYIQR 326
P S+++ +N L + S+ AQ E+ + DD S+ ++ + L+ Y +
Sbjct: 1 PLISIVMPVYNTPEKYLREAIESVR----AQTYPNWELCIADDASTDPEVKRVLKKYAAQ 56
Query: 327 FNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 362
+ +++++ E G+ + + + GE + LD
Sbjct: 57 -DPRIKVVFREENGGISAATNSALELATGEFVALLD 91
>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
synthase (CESA) superfamily. This is a subfamily of
cellulose synthase (CESA) superfamily. CESA superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members of the superfamily include cellulose synthase
catalytic subunit, chitin synthase, glucan biosynthesis
protein and other families of CESA-like proteins.
Length = 251
Score = 38.7 bits (91), Expect = 0.003
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 268 LPKASVILVFHNEGFSSLMRTVHSIIKRT---------PAQYLEEIILVDDFSSKADLDQ 318
LP ++I+ +NE ++I+ P LE II+V D S +
Sbjct: 28 LPTVTIIIPAYNE---------EAVIEAKLENLLALDYPRDRLE-IIVVSD-GSTDGTAE 76
Query: 319 KLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
+Y + V+L+R ER G +R + GE++VF DA
Sbjct: 77 IAREYADK---GVKLLRFPERRGKAAALNRALALATGEIVVFTDA 118
Score = 31.4 bits (72), Expect = 0.73
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 15 GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 49
V+L+R ER G +R + GE++VF DA
Sbjct: 84 KGVKLLRFPERRGKAAALNRALALATGEIVVFTDA 118
>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to
eukaryotic DPM1. A family of bacterial enzymes related
to eukaryotic DPM1; Although the mechanism of eukaryotic
enzyme is well studied, the mechanism of the bacterial
enzymes is not well understood. The eukaryotic DPM1 is
the catalytic subunit of eukaryotic Dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. The enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 181
Score = 37.8 bits (89), Expect = 0.004
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 273 VILVFHNE--GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD---QKLEDYIQRF 327
+++ +NE L + ++++ Y EII VDD S+ D + L + R
Sbjct: 1 IVVPVYNEEENLPELYERLKAVLESLGYDY--EIIFVDDGST----DRTLEILRELAAR- 53
Query: 328 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
+ +V++IR + G G +RG+ ++ +DA
Sbjct: 54 DPRVKVIRLSRNFGQQAALLAGLDHARGDAVITMDA 89
>gnl|CDD|133039 cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 214
Score = 37.6 bits (88), Expect = 0.005
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 303 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 362
E+I+ DD S+ ++ +++YI + + LIRN + G+ R + + G+ + F D
Sbjct: 29 ELIISDDGSTDGTVEI-IKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADGDYVFFCD 87
Score = 31.1 bits (71), Expect = 0.93
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 48
+++YI++ + LIRN + G+ R + + G+ + F D
Sbjct: 45 IKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADGDYVFFCD 87
>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional.
Length = 328
Score = 37.7 bits (88), Expect = 0.008
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 269 PKASVILVFHNEG--FSSLMRTVHSIIKRTPAQYLE--EIILVDDFSSKADLDQKLEDYI 324
PK S+I+ +N G F + M ++ AQ EII+V+D S+ + + + Y
Sbjct: 6 PKLSIIIPLYNAGKDFRAFMESLI-------AQTWTALEIIIVNDGSTDNSV-EIAKHYA 57
Query: 325 QRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
+ + VRL+ + G+ R+ G + G+ + F DA
Sbjct: 58 ENY-PHVRLL-HQANAGVSVARNTGLAVATGKYVAFPDA 94
>gnl|CDD|133056 cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of
hyaluronan. Hyaluronan synthases (HASs) are
bi-functional glycosyltransferases that catalyze
polymerization of hyaluronan. HASs transfer both GlcUA
and GlcNAc in beta-(1,3) and beta-(1,4) linkages,
respectively to the hyaluronan chain using UDP-GlcNAc
and UDP-GlcUA as substrates. HA is made as a free
glycan, not attached to a protein or lipid. HASs do not
need a primer for HA synthesis; they initiate HA
biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA,
and Mg2+. Hyaluronan (HA) is a linear
heteropolysaccharide composed of (1-3)-linked
beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can
be found in vertebrates and a few microbes and is
typically on the cell surface or in the extracellular
space, but is also found inside mammalian cells.
Hyaluronan has several physiochemical and biological
functions such as space filling, lubrication, and
providing a hydrated matrix through which cells can
migrate.
Length = 235
Score = 36.8 bits (86), Expect = 0.011
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKV 331
+VI+ ++E + SI+++ P EII+V D + L + ++ G
Sbjct: 3 TVIIPVYDEDPDVFRECLRSILRQKPL----EIIVVTDGDDEPYLSILSQTV--KYGGIF 56
Query: 332 RLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 385
+ G R + G + +++V LD+ N LP +L P + D K+
Sbjct: 57 --VITVPHPGKRRALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKP-FEDPKV 107
>gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase
family-2 subfamily with unknown function.
Glycosyltransferase family 2 (GT-2) subfamily of unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 221
Score = 35.6 bits (83), Expect = 0.032
Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 35/137 (25%)
Query: 34 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEP 93
GA +RG+ ++FL A + +W D I+ DG FR ++
Sbjct: 66 AGAAAARGDWLLFLHADTRLPPDW----------DAAIIETLRADG--AVAGAFRLRFDD 113
Query: 94 DHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAG--GLFAMDRAFFLELGGYD 151
+ E G + R + PY G GLF + R F ELGG+
Sbjct: 114 PGPRLRLLELGAN----------LRSRLFGL-PY------GDQGLF-IRRELFEELGGFP 155
Query: 152 PGLLVWGGENFELSFKI 168
L E+ EL ++
Sbjct: 156 ELPL---MEDVELVRRL 169
>gnl|CDD|188532 TIGR04017, WcaA, colanic acid biosynthesis glycosyl transferase
WcaA. This gene is one of the glycosyl transferases
involved in the biosynthesis of colanic acid, an
exopolysaccharide expressed in Enterobacteraceae
species.
Length = 279
Score = 33.9 bits (77), Expect = 0.13
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 286 MRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREGLIR 344
+R + S++++ + E+I+VDD SS ++L+ +++ N +VR N G
Sbjct: 21 IRAIKSVLRQDYDNW--EMIIVDDCSSSY---EQLQQFVEALNDPRVRYTHNDINSGACA 75
Query: 345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 377
R++ +++GE I +D E W P L+
Sbjct: 76 VRNQAIMQAKGEYITGIDDDDE----WTPNRLS 104
>gnl|CDD|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferases, which are involved in
bacterial capsule biosynthesis.
Length = 194
Score = 32.7 bits (75), Expect = 0.23
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 133 AGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRI 183
G R+ E+GG+D + E+F+ + ++ G + +VP S +
Sbjct: 73 VGSGALFRRSALQEVGGFDESSV---SEDFDFALRLRRAGYRVRFVPESGV 120
>gnl|CDD|182197 PRK10018, PRK10018, putative glycosyl transferase; Provisional.
Length = 279
Score = 32.3 bits (73), Expect = 0.39
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 286 MRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREGLIR 344
+R + S++++ + + E+I+VDD S+ ++L+ Y+ N ++ I N G
Sbjct: 21 IRAIKSVLRQDYSNW--EMIIVDDCSTSW---EQLQQYVTALNDPRITYIHNDINSGACA 75
Query: 345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 377
R++ ++GE I +D E W P L+
Sbjct: 76 VRNQAIMLAQGEYITGIDDDDE----WTPNRLS 104
>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2,
rSAM/selenodomain-associated. This enzyme may transfer
a nucleotide, or it sugar moiety, as part of a
biosynthetic pathway. Other proposed members of the
pathway include another transferase (TIGR04282), a
phosphoesterase, and a radical SAM enzyme (TIGR04167)
whose C-terminal domain (pfam12345) frequently contains
a selenocysteine [Unknown function, Enzymes of unknown
specificity].
Length = 220
Score = 31.7 bits (73), Expect = 0.61
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 45/142 (31%)
Query: 34 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG-----IDYQTWEFR 88
GA ++G++++FL A + ++L + + + G D R
Sbjct: 65 AGAALAKGDILLFLHADTRLPKDFLEAIRRALAPPGAVA------GCFDLRFDGPGLLLR 118
Query: 89 SVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAG--GLFAMDRAFFLE 146
+ EWG+ + + PY G GLF + R+ F +
Sbjct: 119 -----------LIEWGV-----------NLRSRLTGIPY------GDQGLF-VRRSLFEQ 149
Query: 147 LGGYDPGLLVWGGENFELSFKI 168
+GG+ L E+ ELS ++
Sbjct: 150 IGGFPDIPL---MEDIELSRRL 168
>gnl|CDD|240336 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase;
Provisional.
Length = 333
Score = 31.7 bits (72), Expect = 0.70
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 303 EIILVDDFSSKADLDQKLEDYIQRFNGK------VRLIRNTEREGLIRTRSRGAKESRGE 356
EII+V+D SK + +D+ ++ + L+RN + G +R G SRG+
Sbjct: 109 EIIIVND-GSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVR---IGMLASRGK 164
Query: 357 VIVFLDA 363
I+ +DA
Sbjct: 165 YILMVDA 171
>gnl|CDD|226577 COG4092, COG4092, Predicted glycosyltransferase involved in capsule
biosynthesis [Cell envelope biogenesis, outer membrane].
Length = 346
Score = 31.1 bits (70), Expect = 1.1
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 13/124 (10%)
Query: 43 VIVFLDAHCEVGLNWLPPLL--APIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGI 100
+++FLD C + +L A I R + P++ + + V+
Sbjct: 97 LVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMF-- 154
Query: 101 FEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 160
+ E+ L E K+ + PY +F ++R F GGYD G E
Sbjct: 155 --LDAMIFESPLAEFR-KEDNFFIAPYT------NIFLINRRMFSLTGGYDERFRGHGSE 205
Query: 161 NFEL 164
+FE
Sbjct: 206 DFEF 209
>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 31.3 bits (72), Expect = 1.2
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 21/63 (33%)
Query: 239 METSNHISF--DRTIPDLR--MEECKYWDYP-----------------LDLPKASVILVF 277
M T + ++F D + D++ M + +Y YP L + VILV
Sbjct: 252 MTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVD 311
Query: 278 HNE 280
HNE
Sbjct: 312 HNE 314
>gnl|CDD|215385 PLN02726, PLN02726, dolichyl-phosphate beta-D-mannosyltransferase.
Length = 243
Score = 30.8 bits (70), Expect = 1.2
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN 328
K S+I+ +NE + + V+ I K EII+VDD S D Q + +Q+
Sbjct: 9 MKYSIIVPTYNERLN-IALIVYLIFKALQDVKDFEIIVVDDGSP--DGTQDVVKQLQKVY 65
Query: 329 G--KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
G ++ L + GL G K + G+ +V +DA
Sbjct: 66 GEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDA 102
>gnl|CDD|218633 pfam05553, DUF761, Cotton fibre expressed protein. This family
consists of several plant proteins of unknown function.
Three of the sequences (from Gossypium hirsutum) in this
family are described as cotton fibre expressed proteins.
The remaining sequences, found in Arabidopsis thaliana,
are uncharacterized.
Length = 38
Score = 26.7 bits (60), Expect = 2.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 312 SKADLDQKLEDYIQRFNGKVRL 333
S ++D++ E++I RF ++RL
Sbjct: 1 SDDEVDRRAEEFIARFREQLRL 22
Score = 26.4 bits (59), Expect = 3.7
Identities = 7/19 (36%), Positives = 15/19 (78%)
Query: 1 DLDKKLEDYIERFNGKVRL 19
++D++ E++I RF ++RL
Sbjct: 4 EVDRRAEEFIARFREQLRL 22
>gnl|CDD|133057 cd06435, CESA_NdvC_like, NdvC_like proteins in this family are
putative bacterial beta-(1,6)-glucosyltransferase.
NdvC_like proteins in this family are putative
bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium
japonicum synthesizes periplasmic cyclic
beta-(1,3),beta-(1,6)-D-glucans during growth under
hypoosmotic conditions. Two genes (ndvB, ndvC) are
involved in the beta-(1, 3), beta-(1,6)-glucan
synthesis. The ndvC mutant strain resulted in synthesis
of altered cyclic beta-glucans composed almost entirely
of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic
beta-(1,3),beta-(1,6)-D-glucans function for
osmoregulation. The ndvC mutation also affects the
ability of the bacteria to establish a successful
symbiotic interaction with host plant. Thus, the
beta-glucans may function as suppressors of a host
defense response.
Length = 236
Score = 29.3 bits (66), Expect = 3.0
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 303 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG-----LIRTRSRGAKESRGEV 357
E+I++D+ + L + +E + + + R G L R A ++ E+
Sbjct: 30 EVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPDA--EI 87
Query: 358 IVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEP-DHHYRGIFE 416
I +DA +V +WL L PI+ D ++ V DY+ E Y+G F+
Sbjct: 88 IAVIDADYQVEPDWLKR-LVPIFDDPRVGFVQAPQ--DYRDGEESLFKRMCYAEYKGFFD 144
Query: 417 WGM 419
GM
Sbjct: 145 IGM 147
>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal
transduction mechanisms].
Length = 382
Score = 29.8 bits (67), Expect = 3.3
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 15/97 (15%)
Query: 262 WDYPLDLPKA--SVILV-----FHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKA 314
+++ L P A S+ILV ++N + S FSS
Sbjct: 149 YNFVL-WPVALNSLILVGLALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRVGFSS-E 206
Query: 315 DLDQKLEDY-----IQRFNGKVRLIRNTEREGLIRTR 346
DLD L+ I R + RL+R TE + L R
Sbjct: 207 DLDAALQRLGETLDIDR-DDLERLLRETELQALRRRM 242
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 29.2 bits (66), Expect = 3.8
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 271 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 321
A V ++F N + ++RT +E L +K D+ LE
Sbjct: 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLE 124
>gnl|CDD|184755 PRK14583, hmsR, N-glycosyltransferase; Provisional.
Length = 444
Score = 28.8 bits (64), Expect = 5.8
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 260 KYWDYPLDL--------PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFS 311
++W + D+ P S+++ NEG + T+H+ + +T E+I ++D S
Sbjct: 58 RHWPWGDDVPAPELKGHPLVSILVPCFNEG-LNARETIHAALAQTYTNI--EVIAINDGS 114
Query: 312 SKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNW 371
S D + + ++R+I +G GA +R E +V +D + N
Sbjct: 115 SDDTAQVL--DALLAEDPRLRVIHLAHNQGKAIALRMGAAAARSEYLVCIDGDALLDKNA 172
Query: 372 LPPLLAPIYSDRKIMTV 388
+P L+AP+ ++ + V
Sbjct: 173 VPYLVAPLIANPRTGAV 189
>gnl|CDD|133038 cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in
exopolysaccharide amylovora biosynthesis. AmsE is a
glycosyltransferase involved in exopolysaccharide
amylovora biosynthesis in Erwinia amylovora. Amylovara
is one of the three exopolysaccharide produced by E.
amylovora. Amylovara-deficient mutants are
non-pathogenic. It is a subfamily of Glycosyltransferase
Family GT2, which includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 201
Score = 28.0 bits (63), Expect = 7.2
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 272 SVIL-VFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGK 330
SV++ V+ E L + SI+K+T +E++LV D L++ LE++ ++
Sbjct: 1 SVLMSVYIKEKPEFLREALESILKQTLPP--DEVVLVKDGPVTQSLNEVLEEFKRKLP-- 56
Query: 331 VRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
++++ + GL + + G K + + +D
Sbjct: 57 LKVVPLEKNRGLGKALNEGLKHCTYDWVARMDT 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.141 0.440
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,725,351
Number of extensions: 2386209
Number of successful extensions: 1964
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1936
Number of HSP's successfully gapped: 72
Length of query: 439
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 339
Effective length of database: 6,502,202
Effective search space: 2204246478
Effective search space used: 2204246478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)