RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8674
(439 letters)
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 242 bits (619), Expect = 2e-75
Identities = 89/197 (45%), Positives = 128/197 (64%), Gaps = 3/197 (1%)
Query: 242 SNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYL 301
S I+ +R++PD+R+E CK YP +LP SV++VFHNE +S+L+RTVHS+I R+P +
Sbjct: 2 SEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMI 61
Query: 302 EEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFL 361
EEI+LVDD S + L + LE Y+++ V +IR +R GLIR R +GA SRG+VI FL
Sbjct: 62 EEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFL 121
Query: 362 DAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY 421
DAHCE WL PLLA I DR+ + P+ID I T+E+ + + G F W + +
Sbjct: 122 DAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSD---MTYGGFNWKLNF 178
Query: 422 KENELPEREAKKRKYNR 438
+ +P+RE +RK +R
Sbjct: 179 RWYPVPQREMDRRKGDR 195
Score = 208 bits (531), Expect = 2e-62
Identities = 83/184 (45%), Positives = 119/184 (64%), Gaps = 4/184 (2%)
Query: 2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPL 61
L + LE Y+++ V +IR +R GLIR R +GA SRG+VI FLDAHCE WL PL
Sbjct: 76 LKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPL 135
Query: 62 LAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK 121
LA I DR+ + P+ID I T+E+ + + G F W + ++ +P+RE +RK
Sbjct: 136 LARIKHDRRTVVCPIIDVISDDTFEYMAGSD---MTYGGFNWKLNFRWYPVPQREMDRRK 192
Query: 122 YN-SEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPC 180
+ + P ++PT AGGLF++DR +F E+G YD G+ +WGGEN E+SF+IW CGG++E V C
Sbjct: 193 GDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTC 252
Query: 181 SRIV 184
S +
Sbjct: 253 SHVG 256
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 245 bits (625), Expect = 2e-75
Identities = 99/238 (41%), Positives = 142/238 (59%), Gaps = 5/238 (2%)
Query: 202 PPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKY 261
+ + G GE G+ Y + +A R D + E G N+ S+ IS +R++PD+R C
Sbjct: 47 IRRDAQRVGNGEQGRPYPMTDAERV--DQAYRENGFNIYVSDKISLNRSLPDIRHPNCNS 104
Query: 262 WDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 321
Y LP S+I+ FHNEG+SSL+RTVHS++ R+P + + EI+LVDDFS + L + LE
Sbjct: 105 KRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE 164
Query: 322 DYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 381
DY+ F VR++R +REGLIRTR GA + G+VI FLD+HCE +NWLPPLL I
Sbjct: 165 DYMALFP-SVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIAR 223
Query: 382 DRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNRY 439
+RK + P+ID ID+ + + + RG F+W M YK +P K + +
Sbjct: 224 NRKTIVCPMIDVIDHDDFRYETQ--AGDAMRGAFDWEMYYKRIPIPPELQKADPSDPF 279
Score = 206 bits (525), Expect = 7e-61
Identities = 93/183 (50%), Positives = 122/183 (66%), Gaps = 5/183 (2%)
Query: 1 DLDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPP 60
L K LEDY+ F VR++R +REGLIRTR GA + G+VI FLD+HCE +NWLPP
Sbjct: 158 HLKKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPP 216
Query: 61 LLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKR 120
LL I +RK + P+ID ID+ + + + RG F+W M YK +P K
Sbjct: 217 LLDRIARNRKTIVCPMIDVIDHDDFRYETQ--AGDAMRGAFDWEMYYKRIPIPPELQKAD 274
Query: 121 KYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPC 180
S+P++SP AGGLFA+DR +F ELGGYDPGL +WGGE +E+SFK+WMCGG +E +PC
Sbjct: 275 P--SDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPC 332
Query: 181 SRI 183
SR+
Sbjct: 333 SRV 335
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 238 bits (608), Expect = 1e-73
Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 8/234 (3%)
Query: 205 EPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDY 264
+ K + + ++ +G N S+ + DR IPD R ++C+ +
Sbjct: 2 DALKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQW 61
Query: 265 PLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYI 324
+DLP SV++ FHNE S+L+RTV S++K++P ++EIILVDD+S+ + L
Sbjct: 62 RVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKI- 120
Query: 325 QRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384
KVR++RN REGL+R+R RGA ++ +V+ FLD+HCE +WL PLL + DR
Sbjct: 121 ----EKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRT 176
Query: 385 IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNR 438
+ P+ID I+ +++ +G F+W +++K + + + + R+ N
Sbjct: 177 RVVSPIIDVINMDNFQYVGASA---DLKGGFDWNLVFKWDYMTPEQRRSRQGNP 227
Score = 196 bits (498), Expect = 2e-57
Identities = 74/182 (40%), Positives = 113/182 (62%), Gaps = 4/182 (2%)
Query: 8 DYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 67
+ KVR++RN REGL+R+R RGA ++ +V+ FLD+HCE +WL PLL +
Sbjct: 114 GALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAE 173
Query: 68 DRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYN-SEP 126
DR + P+ID I+ +++ +G F+W +++K + + + + R+ N P
Sbjct: 174 DRTRVVSPIIDVINMDNFQYVGASA---DLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAP 230
Query: 127 YKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSL 186
K+P AGGLF MD+ +F ELG YD + VWGGEN E+SF++W CGGS+E +PCSR+ +
Sbjct: 231 IKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHV 290
Query: 187 IR 188
R
Sbjct: 291 FR 292
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 81.5 bits (201), Expect = 1e-16
Identities = 54/372 (14%), Positives = 109/372 (29%), Gaps = 61/372 (16%)
Query: 7 EDYIERF--NGKVRLIRNTER-EGLIRTRSRGAKESRGEVIVFLDA-------HCEVGLN 56
E+ + F ++ +R + L R+ G + ++ + LD + +
Sbjct: 138 EEIVREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYME 197
Query: 57 WLP--PLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY-KENELP 113
L +A I + I T + + +
Sbjct: 198 LLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRI 257
Query: 114 EREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGG 173
E +GG A + + G +D WGGE+ E ++++ G
Sbjct: 258 EHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGC 317
Query: 174 SIEWVPCSRIVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLG 233
V + AYH G +
Sbjct: 318 YFRSVEGAM----------------------------------AYH----QEPPGKENET 339
Query: 234 EYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSII 293
+ + + + R +E +P S+ + +N ++R V S +
Sbjct: 340 DRAAGKNITVQLLQQKVPYFYRKKEKIESATLKRVPLVSIYIPAYN-CSKYIVRCVESAL 398
Query: 294 KRTPAQYLE--EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 351
Q + E+ + DD S+ L L+++ +VR I + +G+ + +
Sbjct: 399 ----NQTITDLEVCICDDGSTDDTLR-ILQEHYANHP-RVRFISQ-KNKGIGSASNTAVR 451
Query: 352 ESRGEVIVFLDA 363
RG I LD+
Sbjct: 452 LCRGFYIGQLDS 463
Score = 49.2 bits (117), Expect = 2e-06
Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 248 DRTIPDLRMEECKYWDYPLDLPKASVIL-VFHNEGFSSLMRTVHSIIK-RTPAQYLEEII 305
D R E Y L + S+++ ++ L T+ + +T Y E+I
Sbjct: 72 DYVWAGKRKELDDYPRKQLIIDGLSIVIPTYNRAKI--LAITLACLCNQKTIYDY--EVI 127
Query: 306 LVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-EGLIRTRSRGAKESRGEVIVFLDA 363
+ DD S + ++++ + ++ ++ +R + L R+ G + ++ + LD
Sbjct: 128 VADDGSKE-NIEEIVREFESL--LNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDC 183
Score = 39.2 bits (91), Expect = 0.002
Identities = 17/165 (10%), Positives = 46/165 (27%), Gaps = 29/165 (17%)
Query: 4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 63
+ L+++ +VR I + +G+ + + RG I LD+ + + + L
Sbjct: 420 RILQEHYANHP-RVRFISQ-KNKGIGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLD 477
Query: 64 PIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYN 123
D + V + + + + I+ L
Sbjct: 478 EFRKDLSLACV----YTTNRNIDREGNLISNGYNWPIYSREKLTSAM------------- 520
Query: 124 SEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKI 168
+ G++ + ++++ K+
Sbjct: 521 --------ICHHFRMFTARAWNLTEGFNESIS--NAVDYDMYLKL 555
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 57.3 bits (138), Expect = 6e-09
Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 269 PKASVILVFHN-EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF 327
K ++I+ ++N E + + + SI ++ + +I+V+D S + +++ I+ +
Sbjct: 2 NKLTIIVTYYNAEEY--ITGCLESIKQQRTQDF--NLIIVND-GSTDQSKKLMDEAIKDY 56
Query: 328 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
+ +R I E G R+ +E +FLDA
Sbjct: 57 DKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDA 92
Score = 39.2 bits (91), Expect = 0.003
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 49
+++ I+ ++ +R I E G R+ +E +FLDA
Sbjct: 49 MDEAIKDYDKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDA 92
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA);
glycosyltransferase, transferase; 1.50A {Bacillus
subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A*
1qgs_A*
Length = 255
Score = 50.9 bits (122), Expect = 2e-07
Identities = 20/108 (18%), Positives = 49/108 (45%), Gaps = 24/108 (22%)
Query: 269 PKASVILVFHN-EGFSSLMRTVHSIIKRTPAQYLE-EIILVDDFSSKADLD---QKLEDY 323
PK SVI+ +N + + +++ SI+ +T + + E+ ++DD S+ + + +
Sbjct: 1 PKVSVIMTSYNKSDY--VAKSISSILSQT---FSDFELFIMDDNSN----EETLNVIRPF 51
Query: 324 IQRFNGKVRLIRN--------TEREGLIRTRSRGAKESRGEVIVFLDA 363
+ + +VR ++ TE+ ++ + + GE I +
Sbjct: 52 LN--DNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATD 97
Score = 33.1 bits (76), Expect = 0.14
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 7 EDYIERF--NGKVRLIRN--------TEREGLIRTRSRGAKESRGEVIVFLDA 49
+ I F + +VR ++ TE+ ++ + + GE I +
Sbjct: 45 LNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATD 97
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 42.7 bits (100), Expect = 1e-04
Identities = 19/168 (11%), Positives = 42/168 (25%), Gaps = 19/168 (11%)
Query: 19 LIRNTEREGLIRTRS--RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV 76
N E + +G ++F E+ L+A I + + +
Sbjct: 51 AADNREGNQFHGFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWL 110
Query: 77 IDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGL 136
+ G+ W + +G R+ + P + +
Sbjct: 111 VAGVAGSPWRPLNHSVTAQALHISDVFG-------------NDRRRGNVPCRVESLDECF 157
Query: 137 FAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIV 184
M R + G + +L + GG + +
Sbjct: 158 LLMRRLKPVLNSYDMQG---FHYYGADLCLQAEFLGGRA-YAIDFHLH 201
Score = 34.3 bits (78), Expect = 0.064
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 9/132 (6%)
Query: 304 IILVDDFSSKADLDQKLEDYIQRFNGKVR----LIRNTEREGLIRTRS--RGAKESRGEV 357
LV D +A D+ LE + + + N E + +G
Sbjct: 21 CSLVRD---QAKYDRLLESFERFGFTPDKAEFLAADNREGNQFHGFSWHKQMLPRCKGRY 77
Query: 358 IVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEW 417
++F E+ L+A I + + ++ G+ W + +
Sbjct: 78 VIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVAGSPWRPLNHSVTAQALHISDVF 137
Query: 418 GMLYKENELPER 429
G + +P R
Sbjct: 138 GNDRRRGNVPCR 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 74/459 (16%), Positives = 136/459 (29%), Gaps = 183/459 (39%)
Query: 16 KVRLIRN-------TEREGLIRTRS---RGAKESRGEVI-VF---------LDAHCEVGL 55
LI+N +R ++ S R E +++ +F + E
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE---E--- 172
Query: 56 NWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEF-RSVYEPDHHY-RG--IFEWGMLYKENE 111
L +Y ++ +I E R+ + + + +G I EW L +
Sbjct: 173 ------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW--LENPSN 224
Query: 112 LPEREAKKRKY-NSEPYKSPTHAGGLFAMDR-AFFLELGGYDPGLLVWGGENFELSFKIW 169
P+++ Y S P P G+ + +L G+ PG + +
Sbjct: 225 TPDKD-----YLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPG-----------ELRSY 266
Query: 170 MCGGSIEWVPCSR-IVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAG 228
+ G + S+ +V+ V A+ + +
Sbjct: 267 LKGATG----HSQGLVT---AVAIAETDSW----------------------ESFFVSVR 297
Query: 229 DASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVIL--VFHNEGFSSLM 286
A + I +R E YP S++ + +NEG S M
Sbjct: 298 KA--------ITVLFFIG-------VRCYEA----YPNTSLPPSILEDSLENNEGVPSPM 338
Query: 287 RTVHSIIKRTPAQYLEEIILVDDFSSKADLDQK-LEDYIQRFNG------KVRL-IRNTE 338
++ ++L Q+ ++DY+ + N +V + + N
Sbjct: 339 LSI------------------------SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 339 R-----------EGLIRT-----RSRGAKESRGEVIVFLDAHCEVGLNWLP-------PL 375
+ GL T G +SR I F + + +LP L
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR---IPFSERKLKFSNRFLPVASPFHSHL 431
Query: 376 LAP----IYSD---------RKIMTVPV---IDGIDYQT 398
L P I D K + +PV DG D +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Score = 35.4 bits (81), Expect = 0.038
Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 50/131 (38%)
Query: 1 DLDKK-LEDYIERFNG------KVRL-IRNTER-----------EGLIRT-----RSRGA 36
+L ++ ++DY+ + N +V + + N + GL T G
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 37 KESRGEVIVFLDAHCEVGLNWLP-------PLLAP----IYSD---------RKIMTVPV 76
+SR I F + + +LP LL P I D K + +PV
Sbjct: 403 DQSR---IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 77 ---IDGIDYQT 84
DG D +
Sbjct: 460 YDTFDGSDLRV 470
Score = 31.6 bits (71), Expect = 0.71
Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 45/143 (31%)
Query: 127 YKSPTHAGGLFAMDRA--FFLELGGY--------DPGLLVW--GG-------ENF-ELSF 166
YK+ A ++ +RA F + G+ +P L GG EN+ + F
Sbjct: 1636 YKTSKAAQDVW--NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 167 KIWMCGGSIEWVPCSRIV--SLIRPVFKAD-GKLG---NLEP--------PLEPYKEGPG 212
+ + G ++ + + F+++ G L +P E K
Sbjct: 1694 ET-IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS--- 1749
Query: 213 EGGKAYHLPEAYRAAGDASLGEY 235
+G +P AG SLGEY
Sbjct: 1750 KGL----IPADATFAGH-SLGEY 1767
>3bcv_A Putative glycosyltransferase protein; protein structure initiative
II, PSI-II NYSGXRC, structural genomics; 2.35A
{Bacteroides fragilis}
Length = 240
Score = 38.4 bits (90), Expect = 0.003
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 16/102 (15%)
Query: 267 DLPKASVIL-VFHNEGFSSLMRTVHSIIKRTPAQYLE-EIILVDDFSSKADLD---QKLE 321
+PK SVI+ +++ E + L + V +++ +T + EIIL+DD S D + +
Sbjct: 3 LIPKVSVIVPIYNVEKY--LDQCVQALLAQT---LSDIEIILIDDESP----DNCPKICD 53
Query: 322 DYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
DY ++ +++I + + GL + G + GE + F D+
Sbjct: 54 DYAAQYP-NIKVI-HKKNAGLGMACNSGLDVATGEYVAFCDS 93
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 38.5 bits (89), Expect = 0.003
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN 328
SV+L +E + + +V I ++E+I++D S+ + + + +
Sbjct: 48 RTISVVLPALDEEDT--IGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVS 105
Query: 329 GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMT 387
+ L R G R SRG+++VF+D+ ++P L+ P+ + +
Sbjct: 106 REQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHL 165
Query: 388 V 388
V
Sbjct: 166 V 166
Score = 31.2 bits (70), Expect = 0.73
Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 17/129 (13%)
Query: 34 RGAKESRGEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYE 92
R SRG+++VF+D+ ++P L+ P+ + + V +
Sbjct: 125 RSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLV-----KSFYRRPLNVGDA 179
Query: 93 PDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG---- 148
L E GG +A R +
Sbjct: 180 GGGAGATGGGRVTELVARPL------LAALRPELGCILQPLGGEYAATRELLTSVPFAPG 233
Query: 149 -GYDPGLLV 156
G + GLLV
Sbjct: 234 YGVEIGLLV 242
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 34.2 bits (78), Expect = 0.083
Identities = 15/132 (11%), Positives = 37/132 (28%), Gaps = 13/132 (9%)
Query: 265 PLDLPKASVILVFHNEGFSSLMRTVHSIIKRT-PAQYLEEIILVDDFSSKADLDQKLEDY 323
+V + N + + + + Q + +I+ D K
Sbjct: 176 APGTANIAVGIPTFN-RPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAA 234
Query: 324 IQRFNGKVRLIRNTER-------EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLL 376
R ++ + + K + + I+F+D + + + +L
Sbjct: 235 AARLGSRLSIHDQPNLGGSGGYSRVMY----EALKNTDCQQILFMDDDIRLEPDSILRVL 290
Query: 377 APIYSDRKIMTV 388
A + M V
Sbjct: 291 AMHRFAKAPMLV 302
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 32.5 bits (73), Expect = 0.24
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 107 YKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSF 166
Y + P A + + Y GG+ + R F ++ G WG E+ E
Sbjct: 135 YPSSLGPLHIAGPKLHPKYHY--DNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFV 192
Query: 167 KIWMCGGSIEW 177
+I G +
Sbjct: 193 RIRDAGLQVTR 203
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type
glycosyltransferase, GT-81, mannosyl-3-phosphoglyc
synthase, GDP-mannose, transferas; 2.20A {Rubrobacter
xylanophilus} PDB: 3kia_A* 3o3p_A*
Length = 387
Score = 32.5 bits (73), Expect = 0.25
Identities = 21/173 (12%), Positives = 55/173 (31%), Gaps = 11/173 (6%)
Query: 219 HLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFH 278
+ ++ DL + + S +L
Sbjct: 50 SEFMSTYHERPLGPASAAEWFRQRSYDYGQFPPEDLARRKRELG------LTVSAVLPSR 103
Query: 279 NEGFS--SLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN 336
N + ++ +H++ +R P +++I++VD S + ++ +
Sbjct: 104 NVADTVGGIIDEIHALNERAP--LIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGY 161
Query: 337 TEREGLIRTRSRGAKESRGEVIVFLDA-HCEVGLNWLPPLLAPIYSDRKIMTV 388
+ G R +RG++++++DA + +L P+ + V
Sbjct: 162 GDAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFV 214
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 31.8 bits (71), Expect = 0.35
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 130 PTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEW 177
+ GG+ A+ + FL + G+ WGGE+ ++ ++ G SI
Sbjct: 172 VQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISR 219
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC; 1.95A
{Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A
2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A*
2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 32.1 bits (72), Expect = 0.40
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 16/124 (12%)
Query: 271 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS--KADLDQKLEDYIQRFN 328
+ V+ F +E + ++ A +L + + ++ I R
Sbjct: 2 SLVVFPFKHEH----PEVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRAT 57
Query: 329 GKVRLIRNTEREGLIRT---------RSRGAKESRGEVIVFLDA-HCEVGLNWLPPLLAP 378
G +R ER G +R +E++ E I F DA G +W+
Sbjct: 58 GTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEA 117
Query: 379 IYSD 382
Sbjct: 118 ADFG 121
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane,
transmembrane receptor, cell membrane, glycoprotein,
phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D*
3su8_X*
Length = 644
Score = 29.7 bits (66), Expect = 2.4
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 242 SNHISFDRTIPDLRMEECKYWDYPLDLPKAS-----VILVFHNEGFSSL---MRTVHSII 293
N + + R IP + +Y+ AS +L + +S +H +
Sbjct: 542 INKLLYARDIPRYKRMVERYYADIRQTVPASDQEMNSVLAELSWNYSGDLGARVALHELY 601
Query: 294 KRTPAQYLEEIILV---DDFSSKADLDQKLEDYIQRFNGKV 331
K +Y ++II D + K L +L+ KV
Sbjct: 602 KYI-NKYYDQIITALEEDGTAQKMQLGYRLQQIAAAVENKV 641
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl
protease, glycoprotein, hydrolase, signal, zymogen; HET:
IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB:
1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A*
1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A*
2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Length = 453
Score = 28.2 bits (63), Expect = 6.5
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 142 AFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSR 182
F+L + G L GG G + + +
Sbjct: 279 TFYLPVHDKHTGFLTIGGIEERF------YEGPLTYEKLNH 313
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A
{Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A*
3fnu_A*
Length = 451
Score = 27.9 bits (62), Expect = 8.0
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 142 AFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSR 182
+ +L + G L GG G + + +
Sbjct: 278 SIYLPPENKNKGYLTIGGIEERF------FDGPLNYEKLNH 312
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus
morhua} SCOP: b.50.1.2
Length = 324
Score = 27.6 bits (62), Expect = 8.4
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 142 AFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSR 182
+F+L GG + ++ GG + GSI W+P +
Sbjct: 152 SFYLSGGGANGSEVMLGGVDNSH------YTGSIHWIPVTA 186
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa}
SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A*
1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E*
3utl_A
Length = 370
Score = 27.4 bits (61), Expect = 9.9
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 142 AFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSR 182
+ +L +++ GG + GS+ WVP S
Sbjct: 196 SVYLSSNDDSGSVVLLGGIDSSY------YTGSLNWVPVSV 230
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.141 0.440
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,344,658
Number of extensions: 467015
Number of successful extensions: 858
Number of sequences better than 10.0: 1
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 36
Length of query: 439
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 343
Effective length of database: 4,021,377
Effective search space: 1379332311
Effective search space used: 1379332311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.9 bits)