RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8674
(439 letters)
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 125 bits (314), Expect = 3e-33
Identities = 87/191 (45%), Positives = 123/191 (64%), Gaps = 3/191 (1%)
Query: 248 DRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILV 307
+R++PD+R+E CK YP +LP SV++VFHNE +S+L+RTVHS+I R+P +EEI+LV
Sbjct: 1 NRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLV 60
Query: 308 DDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEV 367
DD S + L + LE Y+++ V +IR +R GLIR R +GA SRG+VI FLDAHCE
Sbjct: 61 DDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCEC 120
Query: 368 GLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP 427
WL PLLA I DR+ + P+ID I T+E+ G F W + ++ +P
Sbjct: 121 TAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYM---AGSDMTYGGFNWKLNFRWYPVP 177
Query: 428 EREAKKRKYNR 438
+RE +RK +R
Sbjct: 178 QREMDRRKGDR 188
Score = 102 bits (255), Expect = 4e-25
Identities = 82/183 (44%), Positives = 116/183 (63%), Gaps = 4/183 (2%)
Query: 7 EDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY 66
E Y+++ V +IR +R GLIR R +GA SRG+VI FLDAHCE WL PLLA I
Sbjct: 74 ESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIK 133
Query: 67 SDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYN-SE 125
DR+ + P+ID I T+E+ G F W + ++ +P+RE +RK + +
Sbjct: 134 HDRRTVVCPIIDVISDDTFEYM---AGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTL 190
Query: 126 PYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVS 185
P ++PT AGGLF++DR +F E+G YD G+ +WGGEN E+SF+IW CGG++E V CS +
Sbjct: 191 PVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGH 250
Query: 186 LIR 188
+ R
Sbjct: 251 VFR 253
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 58.4 bits (141), Expect = 5e-10
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS----------KADLDQKLED 322
V+ F +E L+ V + P + E++ +
Sbjct: 3 VVFPFKHEHPEVLLHNV-RVAAAHP--RVHEVLCIGYERDQTYEAVERAAPEISRATGTP 59
Query: 323 YIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHC-EVGLNWLPPLLAPI 379
R ++ +R + +G+ +E++ E I F DA G +W+
Sbjct: 60 VSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAA 117
Score = 40.0 bits (93), Expect = 4e-04
Identities = 24/208 (11%), Positives = 41/208 (19%), Gaps = 51/208 (24%)
Query: 10 IERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 69
R ++ +R + +G+ +E++ E I F DA
Sbjct: 61 SVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFG 120
Query: 70 KIMTVPVID---------------------GIDY-------QTWEF---RSVYE---PDH 95
+ E R V D
Sbjct: 121 YGLVRHYFPRASTDAMITWMITRTGFALLWPHTELSWIEQPLGGELLMRREVAAMLYEDE 180
Query: 96 HYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLL 155
R +WG+ + ++ E Y A L+ L
Sbjct: 181 RVRRRSDWGI---DTLYTFVTVQQGVSIYECYIPEGKAHRLYGGLDDLRTML-------- 229
Query: 156 VWGGENFELSFKIWMCGGSIEWVPCSRI 183
E I + P
Sbjct: 230 ------VECFAAIQSLQHEVVGQPAIHR 251
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
(Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 265
Score = 53.1 bits (126), Expect = 2e-08
Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 8/154 (5%)
Query: 268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF 327
L ++I+ +N L+R ++ L ++I+V + + ++
Sbjct: 2 LDSFTLIMQTYNRT-DLLLRLLNHYQAVP---SLHKVIVVWNNVGEKGPEELWNSLGPHP 57
Query: 328 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMT 387
+I + +R R + E ++ +D + L + I+
Sbjct: 58 I---PVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFS-IWQQFPDQI 113
Query: 388 VPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY 421
+ + T Y G Y
Sbjct: 114 IGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQY 147
Score = 32.7 bits (73), Expect = 0.060
Identities = 12/105 (11%), Positives = 26/105 (24%), Gaps = 1/105 (0%)
Query: 3 DKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLL 62
E + + +I + +R R + E ++ +D + L
Sbjct: 44 KGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAF 103
Query: 63 APIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY 107
+ I+ + + T Y G Y
Sbjct: 104 S-IWQQFPDQIIGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQY 147
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
protein SpsA {Bacillus subtilis [TaxId: 1423]}
Length = 255
Score = 35.5 bits (80), Expect = 0.009
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS 312
PK SVI+ +N+ + +++ SI+ +T + + E+ ++DD S+
Sbjct: 1 PKVSVIMTSYNKS-DYVAKSISSILSQTFSDF--ELFIMDDNSN 41
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 271
Score = 32.7 bits (74), Expect = 0.074
Identities = 13/76 (17%), Positives = 27/76 (35%)
Query: 104 GMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFE 163
Y+ P + + GG+ A+ + FL + G+ GGE+ +
Sbjct: 130 HNTYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDD 189
Query: 164 LSFKIWMCGGSIEWVP 179
+ ++ G S+
Sbjct: 190 IYNRLAFRGMSVSRPN 205
>g1qtn.1 c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [TaxId:
9606]}
Length = 242
Score = 26.7 bits (58), Expect = 4.6
Identities = 10/132 (7%), Positives = 32/132 (24%), Gaps = 17/132 (12%)
Query: 264 YPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDY 323
Y + L+ +N F + + + + D + D L
Sbjct: 4 YQMKSKPRGYCLIINNHNF-----------AKAREKVPKLHSIRDRNGTHLDA-GALTTT 51
Query: 324 IQRFNGKVRLIRNTEREGLIRTR---SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY 380
+ + +++ + E + + I + +H +
Sbjct: 52 FEELHFEIKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHG--DKGIIYGTDGQEA 109
Query: 381 SDRKIMTVPVID 392
++ +
Sbjct: 110 PIYELTSQFTGL 121
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with
biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]}
Length = 109
Score = 25.0 bits (54), Expect = 8.9
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 4/108 (3%)
Query: 102 EWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN 161
++ + ++PE EA K + G LFA G + G
Sbjct: 2 KFTRVCDRRDVPEGEALKVESGGTSVAIFNVDGELFATQDRCTHGDWSLSDGGYLEGDVV 61
Query: 162 FELSFKIWMCG--GSIEWVPCSRIVSLIRPVFKADGKLG-NLEPPLEP 206
C G ++ P + + P+ D + + E
Sbjct: 62 ECSLHMGKFCVRTGKVKSPPPCEALKIF-PIRIEDNDVLVDFEAGYLA 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.141 0.440
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,825,794
Number of extensions: 92453
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 11
Length of query: 439
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 351
Effective length of database: 1,199,356
Effective search space: 420973956
Effective search space used: 420973956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)