BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8675
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 132 bits (331), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 67/72 (93%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NPVVFFD+S+G E+GRM ELFADVVPKT+ENFRQFCTGEFR+D VPIG+KG++FHRVI
Sbjct: 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI 69
Query: 76 KDFMIQGGDFVN 87
KDFMIQGGDFVN
Sbjct: 70 KDFMIQGGDFVN 81
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 65/81 (80%)
Query: 7 IQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGF 66
+ + L N +NPVVF DI++G +G+ FELF ++VPKTSENFRQFCTGE++ + +P+G+
Sbjct: 50 LSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGY 109
Query: 67 KGASFHRVIKDFMIQGGDFVN 87
K FHRVIK+FMIQGGDF+N
Sbjct: 110 KNTIFHRVIKEFMIQGGDFIN 130
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 104 bits (259), Expect = 2e-23, Method: Composition-based stats.
Identities = 46/83 (55%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPI 64
Q++ N +NP VFFD+ +G +GR++ ELFAD+VPKT+ENFR CTGE P+
Sbjct: 7 QAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPL 66
Query: 65 GFKGASFHRVIKDFMIQGGDFVN 87
FKG FHR+IK FMIQGGDF N
Sbjct: 67 HFKGCPFHRIIKKFMIQGGDFSN 89
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIG 65
+ L Q NPVV+FDIS+G T GR+ ELFAD VP T+ENFR CTGE + P+
Sbjct: 11 RENLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLC 70
Query: 66 FKGASFHRVIKDFMIQGGDFV 86
+ G+ FHR+I FMIQGGDF
Sbjct: 71 YTGSFFHRIIPQFMIQGGDFT 91
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHR 73
NP VFFDIS+ GR++ EL+AD VPKT+ENFR CTGE R P+ +K + FHR
Sbjct: 7 NPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHR 66
Query: 74 VIKDFMIQGGDFV 86
VI +FMIQGGDF
Sbjct: 67 VIPNFMIQGGDFT 79
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A
Divergent Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHRVIK 76
VFFDI++G GR++ EL+ DVVPKT+ NFR CTGE + P+ FKG+ FHR+I
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 77 DFMIQGGDFV 86
+FMIQGGDF
Sbjct: 66 NFMIQGGDFT 75
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE---FRRDAVPIGFKGASFHR 73
P FFDI++ GR++FELF+DV PKT ENFR CTGE + P+ +K FHR
Sbjct: 10 PRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHR 69
Query: 74 VIKDFMIQGGDF 85
V+KDFM+QGGDF
Sbjct: 70 VVKDFMVQGGDF 81
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase
Domain Of Human Cyclophilin G
Length = 198
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE---FRRDAVPIGFKGASFHR 73
P FFDI++ GR++FELF+DV PKT ENFR CTGE + P+ +K FHR
Sbjct: 27 PRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHR 86
Query: 74 VIKDFMIQGGDF 85
V+KDFM+QGGDF
Sbjct: 87 VVKDFMVQGGDF 98
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE---FRRDAVPIGFKGASFHR 73
P FFDI++ GR++FELF+DV PKT ENFR CTGE + P+ +K FHR
Sbjct: 10 PRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHR 69
Query: 74 VIKDFMIQGGDF 85
V+KDFM+QGGDF
Sbjct: 70 VVKDFMVQGGDF 81
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHR
Sbjct: 2 SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHR 56
Query: 74 VIKDFMIQGGDFVN 87
VI FM Q GDF N
Sbjct: 57 VIPSFMCQAGDFTN 70
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHR
Sbjct: 1 SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHR 55
Query: 74 VIKDFMIQGGDFVN 87
VI FM Q GDF N
Sbjct: 56 VIPSFMCQAGDFTN 69
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI
Sbjct: 2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHRVI 56
Query: 76 KDFMIQGGDFVN 87
FM Q GDF N
Sbjct: 57 PSFMCQAGDFTN 68
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 56
Query: 76 KDFMIQGGDFVN 87
FM QGGDF +
Sbjct: 57 PGFMCQGGDFTH 68
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHRVI 57
Query: 76 KDFMIQGGDFVN 87
FM Q GDF N
Sbjct: 58 PSFMCQAGDFTN 69
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 7 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 61
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 62 PGFMCQGGDFT 72
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 22 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 76
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 77 PGFMCQGGDFT 87
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 58 PGFMCQGGDFT 68
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin
A Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based
Design Of (5- Hydroxynorvaline)-2-Cyclosporin:
Synthesis, Biological Activity, And Crystallographic
Analysis With Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain
Of Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain
Of Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala
Containing Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With
Sulfur-Substituted Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With
Sulfur-Substituted Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The
Novel Immunosuppressant Sanglifehrin A At 1.6a
Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The
Novel Immunosuppressant Sanglifehrin A At 1.6a
Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 58 PGFMCQGGDFT 68
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 56
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 57 PGFMCQGGDFT 67
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 58 PGFMCQGGDFT 68
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 58 PGFMCQGGDFT 68
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 56
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 57 PGFMCQGGDFT 67
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 58 PGFMCQGGDFT 68
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 58 PGFMCQGGDFT 68
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid
With Cyclophilin A
Length = 173
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 11 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 65
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 66 PGFMCQGGDFT 76
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%), Gaps = 5/74 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFVNVS 89
FM QGG+F + +
Sbjct: 58 PGFMCQGGNFTHCN 71
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FH++I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHKII 57
Query: 76 KDFMIQGGDFV 86
FM QGGDF
Sbjct: 58 PGFMCQGGDFT 68
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 57
Query: 76 KDFMIQGGDFVN 87
FM QGG+F +
Sbjct: 58 PGFMCQGGNFTH 69
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
Query: 7 IQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGF 66
++++ + +N P VFFDI +G + GR++ EL +D+VP+T+ENFR CTGE G+
Sbjct: 1 MRTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGE-----RGFGY 55
Query: 67 KGASFHRVIKDFMIQGGDFV 86
FHRVI FM QGGDFV
Sbjct: 56 HNCCFHRVIPQFMCQGGDFV 75
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-----KGFGYKGSCFHRII 56
Query: 76 KDFMIQGGDFV 86
F QGGDF
Sbjct: 57 PGFXCQGGDFT 67
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 5/68 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ IGR++F+L+ D+VPKT+ENFR CTGE G+ G+ FHRVI DF
Sbjct: 4 VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGE-----KGFGYAGSPFHRVIPDF 58
Query: 79 MIQGGDFV 86
M+QGGDF
Sbjct: 59 MLQGGDFT 66
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFH 72
+ NPVVFFD+ +GR+ ELF+++VP+T+ENFR CTGE GFK + FH
Sbjct: 3 HMTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGE-----KGFGFKNSIFH 57
Query: 73 RVIKDFMIQGGD 84
RVI DF+ QGGD
Sbjct: 58 RVIPDFVCQGGD 69
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 47/67 (70%), Gaps = 5/67 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFFD+ +G ++GR++ LF +VVPKT ENF TGE G+KG+ FHRVIKDF
Sbjct: 10 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGE-----KGYGYKGSIFHRVIKDF 64
Query: 79 MIQGGDF 85
MIQGGDF
Sbjct: 65 MIQGGDF 71
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHRVIKD 77
VFFDIS+ + GR+IFELF+D+ P+T ENFR CTGE + +K + FHR+I
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ 65
Query: 78 FMIQGGDFVN 87
FM QGGD N
Sbjct: 66 FMCQGGDITN 75
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHRVIKD 77
VFFDIS+ + GR+IFELF+D+ P+T ENFR CTGE + +K + FHR+I
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ 65
Query: 78 FMIQGGDFVN 87
FM QGGD N
Sbjct: 66 FMCQGGDITN 75
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin
A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin
A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin
A
Length = 166
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 5/69 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FDI++G +GR++ LF + VPKT ENF+Q +GE G+KG+ FHRVI++F
Sbjct: 8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENG-----FGYKGSIFHRVIRNF 62
Query: 79 MIQGGDFVN 87
MIQGGDF N
Sbjct: 63 MIQGGDFTN 71
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE---FRRDAVPIGFKGAS 70
+ +P FDI + +GR++F+LF+D+ PKT +NF C+GE + + +KG++
Sbjct: 17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST 76
Query: 71 FHRVIKDFMIQGGDF 85
FHRV+K+FMIQGGDF
Sbjct: 77 FHRVVKNFMIQGGDF 91
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia
Sympodialis Mala S 6 Allergen, A Member Of The
Cyclophilin Pan- Allergen Family
Length = 162
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFFDI+ +G + F+LF DVVPKT+ NFR CTGE G+ G+ FHRVI DF
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGE-----KGFGYAGSHFHRVIPDF 58
Query: 79 MIQGGDFV 86
M+QGGDF
Sbjct: 59 MLQGGDFT 66
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFFD+ +G ++GR++ LF VVPKT ENF TGE G+KG+ FHRVIKDF
Sbjct: 18 VFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGE-----KGYGYKGSKFHRVIKDF 72
Query: 79 MIQGGDFVN 87
MIQGGD
Sbjct: 73 MIQGGDITT 81
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of
Human Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ ++NP V+ DI +G GR+ L +DVVP T+ENFR CT E GFKG+SF
Sbjct: 7 KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE-----KGFGFKGSSF 61
Query: 72 HRVIKDFMIQGGDFVN 87
HR+I FM QGGDF N
Sbjct: 62 HRIIPQFMCQGGDFTN 77
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
++NP V+ DI +G GR+ L +DVVP T+ENFR CT E GFKG+SFHR
Sbjct: 1 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE-----KGFGFKGSSFHR 55
Query: 74 VIKDFMIQGGDFVN 87
+I FM QGGDF N
Sbjct: 56 IIPQFMCQGGDFTN 69
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTG---EFRRDAVPIGFKGASFHRVI 75
VF D+++ GR++ EL+ D+ P+T NF CTG + P+ +KG++FHRVI
Sbjct: 9 VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVI 68
Query: 76 KDFMIQGGDFV 86
K+FMIQGGDF
Sbjct: 69 KNFMIQGGDFT 79
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ +G ++GR+IF LF VPKT +NF TGE G+K + FHRVIKDF
Sbjct: 18 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVIKDF 72
Query: 79 MIQGGDFV 86
MIQGGDF
Sbjct: 73 MIQGGDFT 80
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ +G ++GR+IF LF VPKT +NF TGE G+K + FHRVIKDF
Sbjct: 8 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVIKDF 62
Query: 79 MIQGGDFV 86
MIQGGDF
Sbjct: 63 MIQGGDFT 70
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50
A Resolution
Length = 174
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ ++NP V+ DI +G GR+ L +DVVP T+ENFR CT E GFKG+SF
Sbjct: 8 KARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHE-----KGFGFKGSSF 62
Query: 72 HRVIKDFMIQGGDFVN 87
HR+I F QGGDF N
Sbjct: 63 HRIIPQFXCQGGDFTN 78
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFK 67
+ + R + V+FD+ +G +IGR++ LF VPKT +NF TGE G+K
Sbjct: 4 EKKKRPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGE-----KGFGYK 58
Query: 68 GASFHRVIKDFMIQGGDFV 86
+ FHRVIKDFMIQGGDF
Sbjct: 59 DSKFHRVIKDFMIQGGDFT 77
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ +G +IGR++ LF VPKT +NF TGE G+K + FHRVIKDF
Sbjct: 15 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGE-----KGFGYKDSKFHRVIKDF 69
Query: 79 MIQGGDFV 86
MIQGGDF
Sbjct: 70 MIQGGDFT 77
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ + + +GR+ LF P T+ENFRQ CTGE G+K + FHRVI++F
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG-----FGYKDSIFHRVIQNF 68
Query: 79 MIQGGDFVN 87
MIQGGDF N
Sbjct: 69 MIQGGDFTN 77
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania
Donovani Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania
Donovani Ligated With Cyclosporin A
Length = 172
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ + + +GR+ LF P T+ENFRQ CTGE G+K + FHRVI++F
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG-----FGYKDSIFHRVIQNF 68
Query: 79 MIQGGDFVN 87
MIQGGDF N
Sbjct: 69 MIQGGDFTN 77
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFF+IS+ GR++F+L+ + VPKT++NFR+ TG+ G+K + FHRVI F
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH-----GFGYKDSIFHRVIPQF 60
Query: 79 MIQGGDFV 86
M+QGGDF
Sbjct: 61 MLQGGDFT 68
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFF+IS+ GR++F+L+ + VPKT++NFR+ TG+ G+K + FHRVI F
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH-----GFGYKDSIFHRVIPQF 59
Query: 79 MIQGGDFV 86
M+QGGDF
Sbjct: 60 MLQGGDFT 67
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 11/71 (15%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFC---TGEFRRDAVPIGFKGASFHRVI 75
V+FD+ +GR++ +L D+VPKT++NFR C GE G+KG++FHR+I
Sbjct: 30 VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGE--------GYKGSTFHRII 81
Query: 76 KDFMIQGGDFV 86
FM+QGGD+
Sbjct: 82 PGFMVQGGDYT 92
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ +G IGR++ LF VPKT+ NF E + G+ G+ FHRVI DF
Sbjct: 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFI-----ELAKKPKGEGYPGSKFHRVIADF 63
Query: 79 MIQGGDFV 86
MIQGGDF
Sbjct: 64 MIQGGDFT 71
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus
Cyclophilin Reveals 3d Domain Swapping Of A Central
Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus
Cyclophilin Reveals 3d Domain Swapping Of A Central
Element
Length = 172
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 10/73 (13%)
Query: 19 VFFDI-----SVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
VFFD+ T++GR++F LF VPKT++NFR+ C +R A G++ ++FHR
Sbjct: 5 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELC----KRPAGE-GYRESTFHR 59
Query: 74 VIKDFMIQGGDFV 86
+I +FMIQGGDF
Sbjct: 60 IIPNFMIQGGDFT 72
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G ++ EL+ PKT +NF + RR + G FHR+IKDFMIQGGD
Sbjct: 18 TSMGIIVLELYWKHAPKTCKNFAELA----RRGY----YNGTKFHRIIKDFMIQGGD 66
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G ++ EL+ PKT +NF + RR + G FHR+IKDFMIQGGD
Sbjct: 18 TSMGIIVLELYWKHAPKTCKNFAELA----RRGY----YNGTKFHRIIKDFMIQGGD 66
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G ++ EL+ PKT +NF + RR + G FHR+IKDFMIQGGD
Sbjct: 18 TSMGIIVLELYWKHAPKTCKNFAELA----RRGY----YNGTKFHRIIKDFMIQGGD 66
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T++G + E+F + PKT ENF C + + G FHR IK FM+Q GD
Sbjct: 7 TDVGDIKIEVFCERTPKTCENFLALCASNY--------YNGCIFHRNIKGFMVQTGD 55
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T++G + E+F + PKT ENF C + + G FHR IK FM+Q GD
Sbjct: 13 TDVGDIKIEVFCERTPKTCENFLALCASNY--------YNGCIFHRNIKGFMVQTGD 61
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T G + +LFAD P+T+ NF Q+ +D + G FHRVI FMIQGG F
Sbjct: 6 TNHGTITLKLFADKAPETAANFEQYV-----KDG---HYDGTIFHRVIDGFMIQGGGF 55
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIG--------- 65
NP V+ DI + IGR+ +LF D P ENF Q G+ +R ++ G
Sbjct: 14 NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73
Query: 66 --FKGASFHRVIKDFMIQGGDFVN 87
++G FH V+ + I GD N
Sbjct: 74 RTYEGCKFHNVLHNNYIVSGDIYN 97
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli
(Eppib)
Length = 164
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T G ++ + F D P+T +NF +C F + + FHRVI FMIQGG F
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTI--------FHRVINGFMIQGGGF 55
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T G ++ + F D P+T +NF +C F + + FHRVI FMIQGG F
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTI--------FHRVINGFMIQGGGF 55
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G + EL+A P NF Q C + + + FHRV+KDF++QGGD
Sbjct: 28 TSLGDLDVELWARECPLACRNFVQLCLEGYYVNTI--------FHRVVKDFIVQGGD 76
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGG 83
T G + EL AD+ P+ ++F + C ++ D + FHR I++FMIQGG
Sbjct: 13 TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTI--------FHRCIRNFMIQGG 60
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 81
T G + EL D+ PKT ENF + C + + G FHR I++F+IQ
Sbjct: 26 TNKGDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQ 71
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIK 76
P D ++ T +G + +LF PKT ENF C R+ + G +FHR+IK
Sbjct: 17 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CV--HSRNGY---YNGHTFHRIIK 68
Query: 77 DFMIQGGDFVNVSM 90
FMIQ GD M
Sbjct: 69 GFMIQTGDPTGTGM 82
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
A, Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
A, Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEF-----RRDAVPIG--FKGASFHRVIKDFMI 80
T G + LF + PKT NF G P G + GA FHRVI+ FMI
Sbjct: 30 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI 89
Query: 81 QGGD 84
QGGD
Sbjct: 90 QGGD 93
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T G + FELF PK +NF + ++ + FH+ IK F+IQGGD
Sbjct: 23 TNYGDLKFELFCSQCPKACKNFLALSASGYYKNTI--------FHKNIKGFIIQGGD 71
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G EL+ PKT NF C F + + FHRVI +F+IQGGD
Sbjct: 45 TNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTI--------FHRVIPNFVIQGGD 93
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T G + EL++ PK NF Q C + + + FHRV+ F++QGGD
Sbjct: 31 TTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTI--------FHRVVPGFIVQGGD 79
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T G + EL PKT ENF + + G FHRVI FMIQGG F
Sbjct: 10 TNHGVIKLELDEAKAPKTVENFLNYVKKGH--------YDGTIFHRVINGFMIQGGGF 59
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFV 86
T G + EL P + +NF + F + +FHRVI FMIQGG F
Sbjct: 11 TSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFT 61
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFV 86
T G + EL P + +NF + F + +FHRVI FMIQGG F
Sbjct: 11 TSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFT 61
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G + LF KT +NF + + + FHRVIK FM+Q GD
Sbjct: 12 TTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCI--------FHRVIKHFMVQTGD 60
>pdb|1RV9|A Chain A, Crystal Structure Of Neisseria Meningitidis Protein
Nmb0706, Pfam Duf152
Length = 259
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 23 ISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRD 60
IS A E+G+ +F+ F +P+ + F +G+F D
Sbjct: 168 ISADAFEVGQDVFDAFCTPMPEAATAFEGIGSGKFLAD 205
>pdb|2INF|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|B Chain B, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|C Chain C, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|D Chain D, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
Length = 359
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 2 PTWNQIQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVV 42
P N+I S+L +N P++ F VGA+ + +L DVV
Sbjct: 231 PVMNRIFSELAKENVPLIMF--GVGASHLAGDWHDLPLDVV 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,615,314
Number of Sequences: 62578
Number of extensions: 90597
Number of successful extensions: 300
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 78
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)