Query psy8675
Match_columns 92
No_of_seqs 158 out of 1349
Neff 7.2
Searched_HMMs 46136
Date Sat Aug 17 00:52:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546|consensus 100.0 2.1E-33 4.6E-38 207.3 7.5 76 14-89 6-84 (372)
2 KOG0879|consensus 100.0 2.6E-31 5.7E-36 175.3 5.2 80 10-89 4-83 (177)
3 KOG0880|consensus 99.9 7E-28 1.5E-32 166.5 8.5 75 10-89 33-108 (217)
4 PTZ00221 cyclophilin; Provisio 99.9 3E-25 6.5E-30 158.8 10.0 86 3-88 36-128 (249)
5 PLN03149 peptidyl-prolyl isome 99.9 8.5E-25 1.8E-29 150.7 8.8 76 12-87 14-89 (186)
6 cd01926 cyclophilin_ABH_like c 99.9 6.8E-24 1.5E-28 143.3 9.5 71 17-87 1-71 (164)
7 PTZ00060 cyclophilin; Provisio 99.9 1.1E-23 2.5E-28 144.7 9.6 76 12-87 11-87 (183)
8 KOG0111|consensus 99.9 8E-24 1.7E-28 149.3 1.7 71 14-89 134-204 (298)
9 COG0652 PpiB Peptidyl-prolyl c 99.9 6.3E-23 1.4E-27 138.4 5.8 54 27-88 5-58 (158)
10 PRK10903 peptidyl-prolyl cis-t 99.8 3.4E-20 7.4E-25 128.2 7.9 62 14-88 26-87 (190)
11 cd01927 cyclophilin_WD40 cyclo 99.8 2E-20 4.4E-25 124.7 6.4 52 28-87 4-55 (148)
12 cd01921 cyclophilin_RRM cyclop 99.8 2.9E-20 6.3E-25 125.9 6.8 53 28-88 4-56 (166)
13 PRK10791 peptidyl-prolyl cis-t 99.8 4.6E-20 9.9E-25 125.0 7.6 53 28-88 6-58 (164)
14 cd01923 cyclophilin_RING cyclo 99.8 5.2E-20 1.1E-24 124.0 7.4 52 28-87 6-57 (159)
15 cd01928 Cyclophilin_PPIL3_like 99.8 5.2E-20 1.1E-24 123.3 7.4 52 28-87 7-58 (153)
16 cd01925 cyclophilin_CeCYP16-li 99.8 8.6E-20 1.9E-24 124.2 8.1 61 14-87 3-63 (171)
17 cd01920 cyclophilin_EcCYP_like 99.8 5.1E-20 1.1E-24 123.6 6.9 53 28-88 4-56 (155)
18 cd01922 cyclophilin_SpCYP2_lik 99.8 5.1E-20 1.1E-24 122.6 6.7 52 28-87 4-55 (146)
19 KOG0881|consensus 99.8 1.7E-20 3.7E-25 122.8 4.0 62 15-89 8-69 (164)
20 PF00160 Pro_isomerase: Cyclop 99.8 5.4E-19 1.2E-23 117.3 8.7 60 20-89 1-60 (155)
21 cd01924 cyclophilin_TLP40_like 99.8 2.7E-19 5.9E-24 122.4 6.8 54 27-88 3-56 (176)
22 KOG0865|consensus 99.8 1.6E-19 3.6E-24 122.7 4.0 70 15-89 2-74 (167)
23 cd00317 cyclophilin cyclophili 99.8 2.3E-18 5E-23 113.4 6.8 54 28-89 4-57 (146)
24 KOG0885|consensus 99.7 2.5E-17 5.4E-22 122.9 5.2 66 12-90 8-73 (439)
25 KOG0883|consensus 99.7 9.5E-18 2.1E-22 125.9 2.4 62 17-89 276-337 (518)
26 KOG0882|consensus 99.7 1.9E-17 4.2E-22 126.0 3.6 67 16-90 399-465 (558)
27 KOG0884|consensus 99.6 1.3E-15 2.8E-20 99.4 4.4 54 28-89 7-60 (161)
28 KOG0415|consensus 99.5 1.9E-14 4E-19 107.4 5.5 54 28-89 7-60 (479)
29 PRK00969 hypothetical protein; 88.5 0.42 9.1E-06 37.8 2.7 24 31-54 378-401 (508)
30 TIGR03268 methan_mark_3 putati 88.0 0.47 1E-05 37.5 2.7 24 31-54 375-398 (503)
31 COG4070 Predicted peptidyl-pro 85.0 0.77 1.7E-05 35.7 2.4 23 32-54 377-399 (512)
32 PF12903 DUF3830: Protein of u 84.5 1.4 3E-05 29.7 3.2 23 31-53 8-30 (147)
33 KOG0882|consensus 77.8 0.97 2.1E-05 35.7 0.7 48 31-86 112-159 (558)
34 PF09087 Cyc-maltodext_N: Cycl 39.3 67 0.0015 19.6 3.7 27 14-40 46-72 (88)
35 PF02505 MCR_D: Methyl-coenzym 34.0 1.4E+02 0.0031 20.2 4.9 29 29-59 73-101 (153)
36 PF11314 DUF3117: Protein of u 28.2 48 0.001 18.3 1.5 25 18-44 18-42 (51)
37 COG5429 Uncharacterized secret 26.5 67 0.0015 23.5 2.5 25 32-56 42-70 (261)
38 PF09383 NIL: NIL domain; Int 24.3 1.2E+02 0.0025 17.2 2.9 23 18-40 32-55 (76)
39 PRK08309 short chain dehydroge 22.0 66 0.0014 21.6 1.7 19 66-84 127-145 (177)
40 COG1389 DNA topoisomerase VI, 21.9 1E+02 0.0022 24.8 2.9 66 6-82 48-113 (538)
41 COG4391 Uncharacterized protei 20.9 98 0.0021 17.8 2.0 11 14-24 34-44 (62)
42 PF13496 DUF4120: Domain of un 20.7 55 0.0012 20.2 1.0 15 31-45 39-53 (95)
43 COG3934 Endo-beta-mannanase [C 20.2 45 0.00098 27.0 0.6 36 41-87 151-186 (587)
No 1
>KOG0546|consensus
Probab=100.00 E-value=2.1e-33 Score=207.31 Aligned_cols=76 Identities=61% Similarity=1.082 Sum_probs=72.2
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccC---CCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRR---DAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~---~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
..+|+|||||+|++.+.|||+||||.|+||+|||||++||+|+.|. .+++|+|||+.|||||++|||||||++.+|
T Consensus 6 ~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gn 84 (372)
T KOG0546|consen 6 RTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGN 84 (372)
T ss_pred CCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCC
Confidence 3689999999999999999999999999999999999999999974 388999999999999999999999999987
No 2
>KOG0879|consensus
Probab=99.97 E-value=2.6e-31 Score=175.28 Aligned_cols=80 Identities=73% Similarity=1.289 Sum_probs=76.0
Q ss_pred hhccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 10 QLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 10 ~~~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
+.+.+.+|.||||+++++.++|||+||||+|++|+|+|||+++|+|++...+.|++||++.|||||++|||||||+.+++
T Consensus 4 ~~r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gD 83 (177)
T KOG0879|consen 4 QLRSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGD 83 (177)
T ss_pred cccCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCC
Confidence 34568899999999999999999999999999999999999999999987899999999999999999999999999886
No 3
>KOG0880|consensus
Probab=99.95 E-value=7e-28 Score=166.47 Aligned_cols=75 Identities=48% Similarity=0.851 Sum_probs=69.6
Q ss_pred hhccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhc-CcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 10 QLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCT-GEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 10 ~~~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~-g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
++.++.+.+|||||.++++..|||+|+||++.+||||+||++||+ +..+.+ |+|+.||||+|+|||||||++.+
T Consensus 33 ~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-----Y~gS~FhRVi~nfmIQGGd~t~g 107 (217)
T KOG0880|consen 33 EPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-----YKGSKFHRVIPNFMIQGGDFTKG 107 (217)
T ss_pred CCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-----cCCceeeeeecCceeecCccccC
Confidence 445678999999999999999999999999999999999999999 666666 99999999999999999999997
Q ss_pred C
Q psy8675 89 S 89 (92)
Q Consensus 89 ~ 89 (92)
+
T Consensus 108 ~ 108 (217)
T KOG0880|consen 108 D 108 (217)
T ss_pred C
Confidence 4
No 4
>PTZ00221 cyclophilin; Provisional
Probab=99.92 E-value=3e-25 Score=158.76 Aligned_cols=86 Identities=37% Similarity=0.621 Sum_probs=74.4
Q ss_pred cHHHHHhhh---ccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCC---CCcccccCCeEEEEec
Q psy8675 3 TWNQIQSQL---RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRD---AVPIGFKGASFHRVIK 76 (92)
Q Consensus 3 ~~~~~~~~~---~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~---~~~~~Y~g~~f~rvi~ 76 (92)
.|++++.+. ....+++||||+++++.++|||+||||.+.||+||+||++||+|+.+.+ +.++.|+++.||||++
T Consensus 36 ~w~~~~~~~~~~~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~ 115 (249)
T PTZ00221 36 EWENYQKSHRMKEEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDR 115 (249)
T ss_pred eccchhhccccccCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeC
Confidence 688888763 3466899999999999999999999999999999999999999877532 4456799999999998
Q ss_pred C-cEEEecCCCCC
Q psy8675 77 D-FMIQGGDFVNV 88 (92)
Q Consensus 77 ~-~~iqgGD~~~~ 88 (92)
+ ++||+||+...
T Consensus 116 ~~f~iqgGD~~~~ 128 (249)
T PTZ00221 116 NNNIIVLGELDSF 128 (249)
T ss_pred CCCEEEeCCCCCC
Confidence 6 89999998754
No 5
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.92 E-value=8.5e-25 Score=150.71 Aligned_cols=76 Identities=66% Similarity=1.234 Sum_probs=67.1
Q ss_pred ccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 12 ~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
.+..+++||||++++++..|||+||||.+.||+||+||++||++++...+.+++|+++.||||+|+|+|||||+..
T Consensus 14 ~~~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~ 89 (186)
T PLN03149 14 PNPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLK 89 (186)
T ss_pred CCCCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCccc
Confidence 3455789999999999999999999999999999999999999876433445669999999999999999999853
No 6
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.91 E-value=6.8e-24 Score=143.31 Aligned_cols=71 Identities=63% Similarity=1.178 Sum_probs=62.5
Q ss_pred CeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 17 ~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
|+||||++++++..|+|+||||.+.||+||+||++||++..+.+.+...|+++.||||+|+|+|||||+..
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~ 71 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTR 71 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccC
Confidence 68999999999999999999999999999999999999755422233449999999999999999999764
No 7
>PTZ00060 cyclophilin; Provisional
Probab=99.90 E-value=1.1e-23 Score=144.68 Aligned_cols=76 Identities=49% Similarity=0.909 Sum_probs=65.7
Q ss_pred ccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccC-CCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRR-DAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 12 ~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~-~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
++..+|+||||+++++++.|+|+||||.+.||+||+||++||++.... .++...|+++.||||+|+++|||||+..
T Consensus 11 ~~~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~ 87 (183)
T PTZ00060 11 EMSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITN 87 (183)
T ss_pred ccCCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccC
Confidence 445689999999999999999999999999999999999999975421 1233459999999999999999999864
No 8
>KOG0111|consensus
Probab=99.88 E-value=8e-24 Score=149.27 Aligned_cols=71 Identities=52% Similarity=0.907 Sum_probs=68.6
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
..+|.||+|+.|++...|||+++|..|++|+|++||+.||+|+.|++ |+|++||||||.||+||||++++|
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-----ykgssfhriip~fmcqggdftn~n 204 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-----YKGSSFHRIIPKFMCQGGDFTNGN 204 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-----ccccchhhhhhhhhccCCccccCC
Confidence 45899999999999999999999999999999999999999999988 999999999999999999999987
No 9
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.3e-23 Score=138.40 Aligned_cols=54 Identities=46% Similarity=0.756 Sum_probs=51.5
Q ss_pred CeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 27 ATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 27 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
.+..|+|+||||.+.||+||+||++||+.++ |+|+.||||||+|||||||++.+
T Consensus 5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~--------Ydg~~FHRVi~~FmiQgGd~~~~ 58 (158)
T COG0652 5 ETNKGDITIELYPDKAPKTVANFLQLVKEGF--------YDGTIFHRVIPGFMIQGGDPTGG 58 (158)
T ss_pred eccCCCEEEEECCCcCcHHHHHHHHHHHcCC--------CCCceEEEeecCceeecCCCCCC
Confidence 3679999999999999999999999999888 99999999999999999999987
No 10
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.82 E-value=3.4e-20 Score=128.21 Aligned_cols=62 Identities=34% Similarity=0.697 Sum_probs=55.4
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
+..++|.+++ ..|+|+||||.+.||+||+||++||+.++ |+|+.||||+|+|+|||||+...
T Consensus 26 ~~~~~v~l~T-----~~G~i~ieL~~~~aP~t~~NF~~L~~~g~--------Ydg~~FhRvi~~f~iQgG~~~~~ 87 (190)
T PRK10903 26 KGDPHVLLTT-----SAGNIELELNSQKAPVSVKNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFTEQ 87 (190)
T ss_pred CCCcEEEEEe-----ccccEEEEEeCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEeCCceEEeCCcCCC
Confidence 3456777764 49999999999999999999999999988 99999999999999999997653
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.82 E-value=2e-20 Score=124.69 Aligned_cols=52 Identities=42% Similarity=0.707 Sum_probs=49.5
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
|..|+|+||||.+.||+||+||++||++++ |+++.||||+|+|+|||||+..
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~Rvi~~f~iq~Gd~~~ 55 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHARNGY--------YNNTIFHRVIKGFMIQTGDPTG 55 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhhcCC--------cCCcEEEEEcCCcEEEecccCC
Confidence 569999999999999999999999999988 9999999999999999999864
No 12
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=99.82 E-value=2.9e-20 Score=125.86 Aligned_cols=53 Identities=32% Similarity=0.606 Sum_probs=50.2
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
|..|+|+||||.+.||+||+||++||++++ |+++.||||+|+|+|||||+...
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~--------Y~g~~fhrvi~~f~iQgGd~~~~ 56 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCKLKY--------YNFCLFYNVQKDFIAQTGDPTGT 56 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHhcCC--------cCCCEEEEEeCCceEEECCcCCC
Confidence 569999999999999999999999999988 99999999999999999999753
No 13
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.82 E-value=4.6e-20 Score=124.98 Aligned_cols=53 Identities=42% Similarity=0.817 Sum_probs=50.0
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
|..|+|+|+||.+.||+||+||++||+.++ |+++.||||+|+|+|||||+..+
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Yd~~~fhRvi~~f~iQgGd~~~~ 58 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQGGGFEPG 58 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEecCcEEEeCCcCCC
Confidence 569999999999999999999999999988 99999999999999999997643
No 14
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.81 E-value=5.2e-20 Score=123.97 Aligned_cols=52 Identities=44% Similarity=0.843 Sum_probs=49.6
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
|+.|+|+||||.+.||+||+||++||+.++ |+++.||||+|+++|||||+..
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~rv~~~~~iq~Gd~~~ 57 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCKKGY--------YDGTIFHRSIRNFMIQGGDPTG 57 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHhcCc--------cCCcEEEEEeCCcEEEecccCC
Confidence 569999999999999999999999999888 9999999999999999999875
No 15
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.81 E-value=5.2e-20 Score=123.34 Aligned_cols=52 Identities=44% Similarity=0.839 Sum_probs=49.7
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
|..|+|+||||.+.||+||+||++||++++ |+++.||||+|+|+|||||+.+
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~rv~~~f~iq~Gd~~~ 58 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCASGY--------YNGCIFHRNIKGFMVQTGDPTG 58 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHhcCc--------cCCcEEEEeCCCCEEEccccCC
Confidence 569999999999999999999999999988 9999999999999999999875
No 16
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.81 E-value=8.6e-20 Score=124.19 Aligned_cols=61 Identities=33% Similarity=0.644 Sum_probs=54.7
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
+..-+|.+++ ..|+|+||||.+.+|+||+||++||+.++ |+++.||||+|+|+|||||+.+
T Consensus 3 ~~~~~v~i~T-----s~G~i~ieL~~~~~P~t~~nF~~L~~~~~--------Y~~~~f~Rvi~~f~iQgGd~~~ 63 (171)
T cd01925 3 PTTGKVILKT-----TAGDIDIELWSKEAPKACRNFIQLCLEGY--------YDNTIFHRVVPGFIIQGGDPTG 63 (171)
T ss_pred CcccEEEEEE-----ccccEEEEEeCCCChHHHHHHHHHHhcCC--------CCCCEEEEEcCCcEEEccccCC
Confidence 3345677774 49999999999999999999999999988 9999999999999999999864
No 17
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.81 E-value=5.1e-20 Score=123.57 Aligned_cols=53 Identities=42% Similarity=0.779 Sum_probs=50.2
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
|..|+|+||||.+.||+||+||++||+.++ |+++.||||+|+|+|||||+...
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Yd~~~fhRvi~~f~iQ~Gd~~~~ 56 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRKGF--------YDNTIFHRVISGFVIQGGGFTPD 56 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhcCC--------CCCCEEEEEeCCcEEEeCCCCCC
Confidence 569999999999999999999999999988 99999999999999999998754
No 18
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.81 E-value=5.1e-20 Score=122.56 Aligned_cols=52 Identities=44% Similarity=0.843 Sum_probs=49.7
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
|+.|+|+||||.+.||+||+||++||+.++ |+++.||||+|+|+|||||+.+
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~Rvi~~f~iq~Gd~~~ 55 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAKRGY--------YNGTIFHRLIKDFMIQGGDPTG 55 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEcCCcEEEecccCC
Confidence 669999999999999999999999999988 9999999999999999999864
No 19
>KOG0881|consensus
Probab=99.81 E-value=1.7e-20 Score=122.80 Aligned_cols=62 Identities=39% Similarity=0.777 Sum_probs=57.3
Q ss_pred CCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 15 NNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 15 ~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
.-|.|+++.+ +|.|++|||-+.+|+||+||.+|++.++ |+|..|||||++|||||||+++..
T Consensus 8 q~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrgY--------Yn~v~FHRii~DFmiQGGDPTGTG 69 (164)
T KOG0881|consen 8 QPPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRGY--------YNGVIFHRIIKDFMIQGGDPTGTG 69 (164)
T ss_pred CCCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhccc--------ccceeeeehhhhheeecCCCCCCC
Confidence 3478888855 9999999999999999999999999999 999999999999999999999754
No 20
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.79 E-value=5.4e-19 Score=117.27 Aligned_cols=60 Identities=48% Similarity=0.952 Sum_probs=55.2
Q ss_pred EEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 20 FFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 20 ~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
|+++++++ .|+|+||||.+.||++|+||++||+.+. |+++.|||++|+++||+||+...+
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~ri~~~~~i~~G~~~~~~ 60 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSGF--------YDGTKFHRIIPNFVIQGGDPTGNG 60 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTTS--------STTEBEEEEETTTEEEESSTTTSS
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcccc--------cCCceeecccccceeeeeeccCCC
Confidence 78888655 9999999999999999999999999877 999999999999999999987653
No 21
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.79 E-value=2.7e-19 Score=122.42 Aligned_cols=54 Identities=33% Similarity=0.494 Sum_probs=50.9
Q ss_pred CeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 27 ATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 27 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
.|..|+|+||||.+.||+||+||++||+.++ |+++.||||+|+|||||||+...
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~--------Ydg~~FhRVi~~fviQgGdp~~~ 56 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGF--------YDGMEFHRVEGGFVVQTGDPQGK 56 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCC--------cCCCEEEEecCCcEEEecCCCCC
Confidence 3678999999999999999999999999888 99999999999999999999755
No 22
>KOG0865|consensus
Probab=99.77 E-value=1.6e-19 Score=122.73 Aligned_cols=70 Identities=56% Similarity=1.031 Sum_probs=65.1
Q ss_pred CCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEE---EecCcEEEecCCCCCC
Q psy8675 15 NNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR---VIKDFMIQGGDFVNVS 89 (92)
Q Consensus 15 ~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~r---vi~~~~iqgGD~~~~~ 89 (92)
.+|.||+|++++++++||+.++||.|.+|+|+|||..||+|+++.+ |+++.||| .+++||+||||++.+|
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-----yk~s~fhr~~~~~~~fm~qggDft~hn 74 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-----YKGSCFHRLIPIIPGFMCQGGDFTCHN 74 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-----cccchhhhccccccceeeccCcccccC
Confidence 4799999999999999999999999999999999999999988777 99999999 3457999999999886
No 23
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.75 E-value=2.3e-18 Score=113.37 Aligned_cols=54 Identities=50% Similarity=0.900 Sum_probs=50.5
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
|..|+|+||||.+.+|++|+||++||++++ |+++.|||++|+++||+||+....
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~--------Y~~~~f~rv~~~~~iq~Gd~~~~~ 57 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARGGF--------YDGTTFHRVIPGFMIQGGDPTGTG 57 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhcCC--------cCCCEEEEEeCCCeEEECCCCCCC
Confidence 457999999999999999999999999988 999999999999999999987654
No 24
>KOG0885|consensus
Probab=99.69 E-value=2.5e-17 Score=122.88 Aligned_cols=66 Identities=29% Similarity=0.598 Sum_probs=60.0
Q ss_pred ccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCCC
Q psy8675 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 90 (92)
Q Consensus 12 ~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~~ 90 (92)
.++.+-+|.+..+ .|+|.|||++..||++|.||++||..++ |+|+.|||++|+|.+||||++...+
T Consensus 8 EP~ttgkvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGegy--------y~nt~fhrlvp~f~~Qggdp~~~gt 73 (439)
T KOG0885|consen 8 EPPTTGKVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEGY--------YDNTEFHRLVPGFLVQGGDPTGTGT 73 (439)
T ss_pred CCCccceEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhcc--------ccCceeeeeccchhcccCCCCCCCC
Confidence 4566678888755 9999999999999999999999999998 9999999999999999999998765
No 25
>KOG0883|consensus
Probab=99.68 E-value=9.5e-18 Score=125.95 Aligned_cols=62 Identities=34% Similarity=0.681 Sum_probs=55.9
Q ss_pred CeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 17 ~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
.+-|..+. +..|.|-+||++|.+|++|+||+.||+.++ |+++.|||.|++|||||||+++..
T Consensus 276 kkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~gY--------Ynnt~FHRsIrnFmiQGGDPTGTG 337 (518)
T KOG0883|consen 276 KKGYVRLV---TNHGPLNLELHCDYAPRACENFITLCKNGY--------YNNTIFHRSIRNFMIQGGDPTGTG 337 (518)
T ss_pred ccceEEEe---ccCCceeeEeecCcchHHHHHHHHHHhccc--------ccchHHHHHHHHHeeeCCCCCCCC
Confidence 34466655 668999999999999999999999999999 999999999999999999999864
No 26
>KOG0882|consensus
Probab=99.68 E-value=1.9e-17 Score=125.96 Aligned_cols=67 Identities=30% Similarity=0.517 Sum_probs=59.2
Q ss_pred CCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCCC
Q psy8675 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 90 (92)
Q Consensus 16 ~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~~ 90 (92)
.+++.=+-.|-.|..|+|.|.||+++||||||||..-|+.++ |+|..|||||++||||+||+++..+
T Consensus 399 g~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngy--------y~~~~fhriik~fmiqtgdp~g~gt 465 (558)
T KOG0882|consen 399 GNKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGY--------YDNHTFHRIIKGFMIQTGDPLGDGT 465 (558)
T ss_pred CceecccceEEEecccceEEEecccccchhhhhhhccccCcc--------ccCcchHHhhhhheeecCCCCCCCC
Confidence 455555555666779999999999999999999999999998 9999999999999999999998764
No 27
>KOG0884|consensus
Probab=99.59 E-value=1.3e-15 Score=99.41 Aligned_cols=54 Identities=41% Similarity=0.842 Sum_probs=50.7
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
+..|+|.||||.+.+|+|||||+.||...+ |++|.|||-+|+||+|+||++...
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~~~~~--------~n~~~~~~~~~~f~v~~~~~~~tg 60 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALCASDY--------YNGCIFHRNIKGFMVQTGDPTHTG 60 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHhhhhh--------ccceeecCCCCCcEEEeCCCCCCC
Confidence 558999999999999999999999999988 999999999999999999998653
No 28
>KOG0415|consensus
Probab=99.51 E-value=1.9e-14 Score=107.42 Aligned_cols=54 Identities=31% Similarity=0.622 Sum_probs=51.4
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
|.+|+|+|+||.+.+|+||.||++||+..+ |+.|.||.|.++|.+|.||+++..
T Consensus 7 TtlGDlvIDLf~~erP~~clNFLKLCk~KY--------YN~clfh~vq~~f~aQTGDPtGtG 60 (479)
T KOG0415|consen 7 TTLGDLVIDLFVKERPRTCLNFLKLCKIKY--------YNFCLFHTVQRDFTAQTGDPTGTG 60 (479)
T ss_pred eecccEEeeeecccCcHHHHHHHHHHhHhh--------cccceeeeccccceeecCCCCCCC
Confidence 559999999999999999999999999999 999999999999999999999854
No 29
>PRK00969 hypothetical protein; Provisional
Probab=88.53 E-value=0.42 Score=37.85 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred eeEEEEecCCCChhhHHHHHHhhc
Q psy8675 31 GRMIFELFADVVPKTSENFRQFCT 54 (92)
Q Consensus 31 G~i~ieL~~~~~P~t~~nF~~l~~ 54 (92)
.-|.|+||.+.||+|+.-|+++.-
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~tG 401 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVTG 401 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhcC
Confidence 358999999999999999998764
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=88.03 E-value=0.47 Score=37.51 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.1
Q ss_pred eeEEEEecCCCChhhHHHHHHhhc
Q psy8675 31 GRMIFELFADVVPKTSENFRQFCT 54 (92)
Q Consensus 31 G~i~ieL~~~~~P~t~~nF~~l~~ 54 (92)
.-|.|+||.+.||+|+.-|+++.-
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~tG 398 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFTG 398 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhcC
Confidence 357999999999999999998763
No 31
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=85.00 E-value=0.77 Score=35.74 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred eEEEEecCCCChhhHHHHHHhhc
Q psy8675 32 RMIFELFADVVPKTSENFRQFCT 54 (92)
Q Consensus 32 ~i~ieL~~~~~P~t~~nF~~l~~ 54 (92)
-|.||||.+.||+++.-|+++..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 48999999999999999998764
No 32
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=84.48 E-value=1.4 Score=29.66 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.6
Q ss_pred eeEEEEecCCCChhhHHHHHHhh
Q psy8675 31 GRMIFELFADVVPKTSENFRQFC 53 (92)
Q Consensus 31 G~i~ieL~~~~~P~t~~nF~~l~ 53 (92)
-.++.+|..|.||+||+-|.+.-
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH-
T ss_pred eEEEEEEcccCChHHHHHHHHhC
Confidence 36789999999999999998764
No 33
>KOG0882|consensus
Probab=77.77 E-value=0.97 Score=35.75 Aligned_cols=48 Identities=27% Similarity=0.364 Sum_probs=44.0
Q ss_pred eeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCC
Q psy8675 31 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFV 86 (92)
Q Consensus 31 G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~ 86 (92)
-.|.|+++.+-.|.-++-|..+|.-.+ +++-.|.+|.+.+++|.||..
T Consensus 112 s~IAVs~~~sg~i~VvD~~~d~~q~~~--------fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 112 SLIAVSLFKSGKIFVVDGFGDFCQDGY--------FKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred eeEEeecccCCCcEEECCcCCcCccce--------ecccccCceEEEEeeccccce
Confidence 389999999999999999999998877 899999999999999999864
No 34
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=39.31 E-value=67 Score=19.63 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=19.3
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFAD 40 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~ 40 (92)
.+...+|+++.+.+...|.+.|.+...
T Consensus 46 ~npNYLFv~L~i~~akpg~~~i~~~~~ 72 (88)
T PF09087_consen 46 DNPNYLFVYLDISDAKPGTFTINFKKG 72 (88)
T ss_dssp SSTTEEEEEEEE-T--SEEEEEEEEET
T ss_pred CCCCEEEEEEecCCCCCcEEEEEEEcC
Confidence 455688888888888999999998764
No 35
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=33.95 E-value=1.4e+02 Score=20.21 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=23.1
Q ss_pred EeeeEEEEecCCCChhhHHHHHHhhcCcccC
Q psy8675 29 EIGRMIFELFADVVPKTSENFRQFCTGEFRR 59 (92)
Q Consensus 29 ~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~ 59 (92)
..|||.+||-.+ -...+...+.|.....+
T Consensus 73 ~vGri~lele~~--~~~ie~I~~iCee~lpf 101 (153)
T PF02505_consen 73 KVGRIILELEDE--EDVIEKIREICEEVLPF 101 (153)
T ss_pred EEeEEEEEecCc--HHHHHHHHHHHHHhCCC
Confidence 479999999996 56778888999876533
No 36
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=28.15 E-value=48 Score=18.26 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=17.3
Q ss_pred eEEEEEeeCCeEeeeEEEEecCCCChh
Q psy8675 18 VVFFDISVGATEIGRMIFELFADVVPK 44 (92)
Q Consensus 18 ~v~~di~~~~~~~G~i~ieL~~~~~P~ 44 (92)
.+.|.+-+++ -||+++||..+.|-.
T Consensus 18 ~ivmRvPleG--GGRLVvEl~~~Ea~~ 42 (51)
T PF11314_consen 18 GIVMRVPLEG--GGRLVVELNPDEAKE 42 (51)
T ss_pred eEEEEEecCC--CcEEEEEeCHHHHHH
Confidence 4556665554 589999998876543
No 37
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=26.46 E-value=67 Score=23.52 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=20.0
Q ss_pred eEEEEecCC----CChhhHHHHHHhhcCc
Q psy8675 32 RMIFELFAD----VVPKTSENFRQFCTGE 56 (92)
Q Consensus 32 ~i~ieL~~~----~~P~t~~nF~~l~~g~ 56 (92)
.-++|||.. .||..-+||.+++...
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~ 70 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDP 70 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCC
Confidence 357788864 5999999999999754
No 38
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=24.33 E-value=1.2e+02 Score=17.19 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=16.8
Q ss_pred eEEEEEe-eCCeEeeeEEEEecCC
Q psy8675 18 VVFFDIS-VGATEIGRMIFELFAD 40 (92)
Q Consensus 18 ~v~~di~-~~~~~~G~i~ieL~~~ 40 (92)
.++=.+. +.+++.|.++++|-++
T Consensus 32 Il~g~i~~i~~~~~G~l~l~l~g~ 55 (76)
T PF09383_consen 32 ILHGNIEEIQGTPFGILILELPGD 55 (76)
T ss_dssp EEEEEEEEETTEEEEEEEEEEES-
T ss_pred EEEEEeEEcCCeeEEEEEEEEECC
Confidence 4444554 5789999999999765
No 39
>PRK08309 short chain dehydrogenase; Provisional
Probab=22.00 E-value=66 Score=21.63 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.1
Q ss_pred ccCCeEEEEecCcEEEecC
Q psy8675 66 FKGASFHRVIKDFMIQGGD 84 (92)
Q Consensus 66 Y~g~~f~rvi~~~~iqgGD 84 (92)
-..|.+|||+=||+++++.
T Consensus 127 ~~~~~~~~i~lgf~~~~~~ 145 (177)
T PRK08309 127 PARCSYRRVILGFVLEDTY 145 (177)
T ss_pred hcCCceEEEEEeEEEeCCc
Confidence 4677899999999999874
No 40
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=21.93 E-value=1e+02 Score=24.82 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=39.5
Q ss_pred HHHhhhccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEe
Q psy8675 6 QIQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQG 82 (92)
Q Consensus 6 ~~~~~~~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqg 82 (92)
++.++...-..|.++++|...+...-.|.+|=.+ |--..+++--+=|.. +-|+.||+++..---||
T Consensus 48 SLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNG---pGIP~e~IPkvFGk~--------LygSKfh~~~QsRGqqG 113 (538)
T COG1389 48 SLDACEEAGILPDIKVEIERIGKDHYKVIVEDNG---PGIPEEQIPKVFGKM--------LYGSKFHRNIQSRGQQG 113 (538)
T ss_pred chhhHHhcCCCCceEEEEEecCCceEEEEEecCC---CCCChhHhHHHHHHH--------hccchhhhhhhcccccc
Confidence 4566666778899999999776665666666444 333333333333333 55677887765443333
No 41
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.91 E-value=98 Score=17.83 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=9.2
Q ss_pred CCCCeEEEEEe
Q psy8675 14 QNNPVVFFDIS 24 (92)
Q Consensus 14 ~~~~~v~~di~ 24 (92)
...|+||+|+.
T Consensus 34 ~~HPrV~L~mg 44 (62)
T COG4391 34 NDHPRVFLDMG 44 (62)
T ss_pred CCCCEEEEEcC
Confidence 56899999994
No 42
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=20.68 E-value=55 Score=20.21 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.8
Q ss_pred eeEEEEecCCCChhh
Q psy8675 31 GRMIFELFADVVPKT 45 (92)
Q Consensus 31 G~i~ieL~~~~~P~t 45 (92)
++-.||||.|.||-+
T Consensus 39 ~~ceIELY~DfApyS 53 (95)
T PF13496_consen 39 HPCEIELYYDFAPYS 53 (95)
T ss_pred CCeEEEEEeccCccc
Confidence 577899999999954
No 43
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=20.20 E-value=45 Score=26.99 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=29.0
Q ss_pred CChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 41 VVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 41 ~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
.+|+.++||..+..+-+ ..+.++-|+..++-||+..
T Consensus 151 ~~p~s~N~f~~w~~emy-----------~yiK~ldd~hlvsvGD~~s 186 (587)
T COG3934 151 EAPISVNNFWDWSGEMY-----------AYIKWLDDGHLVSVGDPAS 186 (587)
T ss_pred cccCChhHHHHHHHHHH-----------HHhhccCCCCeeecCCcCC
Confidence 38999999999887654 3466788999999999865
Done!