RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8675
(92 letters)
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin
A, B and H-like cyclophilin-type peptidylprolyl cis-
trans isomerase (PPIase) domain. This family represents
the archetypal cystolic cyclophilin similar to human
cyclophilins A, B and H. PPIase is an enzyme which
accelerates protein folding by catalyzing the cis-trans
isomerization of the peptide bonds preceding proline
residues. These enzymes have been implicated in protein
folding processes which depend on catalytic
/chaperone-like activities. As cyclophilins, Human
hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae
Cpr1 and C. elegans Cyp-3, are inhibited by the
immunosuppressive drug cyclopsporin A (CsA). CsA binds
to the PPIase active site. Cyp-3. S. cerevisiae Cpr1
interacts with the Rpd3 - Sin3 complex and in addition
is a component of the Set3 complex. S. cerevisiae Cpr1
has also been shown to have a role in Zpr1p nuclear
transport. Human cyclophilin H associates with the
[U4/U6.U5] tri-snRNP particles of the splicesome.
Length = 164
Score = 135 bits (343), Expect = 2e-42
Identities = 45/71 (63%), Positives = 54/71 (76%)
Query: 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIK 76
P VFFDI++G GR++ ELFADVVPKT+ENFR CTGE + P G+KG++FHRVI
Sbjct: 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIP 60
Query: 77 DFMIQGGDFVN 87
DFMIQGGDF
Sbjct: 61 DFMIQGGDFTR 71
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H);
Provisional.
Length = 186
Score = 134 bits (339), Expect = 7e-42
Identities = 50/76 (65%), Positives = 60/76 (78%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
N NPVVFFD+++G GR+ ELFAD+ PKT+ENFRQFCTGEFR+ +P G+KG F
Sbjct: 14 PNPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQF 73
Query: 72 HRVIKDFMIQGGDFVN 87
HRVIKDFMIQGGDF+
Sbjct: 74 HRVIKDFMIQGGDFLK 89
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional.
Length = 183
Score = 98.8 bits (246), Expect = 9e-28
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGF 66
QS P VFFDIS+ GR++FELF+DV PKT+ENFR C G+ + +
Sbjct: 7 QSFPEMSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHY 66
Query: 67 KGASFHRVIKDFMIQGGDFVN 87
KG+ FHR+I FM QGGD N
Sbjct: 67 KGSIFHRIIPQFMCQGGDITN 87
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type
peptidylprolyl cis- trans isomerases. This family
contains eukaryotic, bacterial and archeal proteins
which exhibit a peptidylprolyl cis- trans isomerases
activity (PPIase, Rotamase) and in addition bind the
immunosuppressive drug cyclosporin (CsA).
Immunosuppression in vertebrates is believed to be the
result of the cyclophilin A-cyclosporin protein drug
complex binding to and inhibiting the
protein-phosphatase calcineurin. PPIase is an enzyme
which accelerates protein folding by catalyzing the
cis-trans isomerization of the peptide bonds preceding
proline residues. Cyclophilins are a diverse family in
terms of function and have been implicated in protein
folding processes which depend on catalytic
/chaperone-like activities. This group contains human
cyclophilin 40, a co-chaperone of the hsp90 chaperone
system; human cyclophilin A, a chaperone in the HIV-1
infectious process and; human cyclophilin H, a
component of the U4/U6 snRNP, whose isomerization or
chaperoning activities may play a role in RNA splicing.
.
Length = 146
Score = 80.0 bits (198), Expect = 7e-21
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T GR++ EL+ D PKT ENF G F + G +FHRVI FMIQGGD
Sbjct: 4 TTKGRIVIELYGDEAPKTVENFLSLARGGF--------YDGTTFHRVIPGFMIQGGDPTG 55
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl
cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans
isomerases, also known as cyclophilins, share this
domain of about 109 amino acids. Cyclophilins have been
found in all organisms studied so far and catalyze
peptidyl-prolyl isomerisation during which the peptide
bond preceding proline (the peptidyl-prolyl bond) is
stabilised in the cis conformation. Mammalian
cyclophilin A (CypA) is a major cellular target for the
immunosuppressive drug cyclosporin A (CsA). Other roles
for cyclophilins may include chaperone and cell
signalling function.
Length = 144
Score = 76.2 bits (188), Expect = 3e-19
Identities = 31/68 (45%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 20 FFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFM 79
F DI+ T +GR++ ELF D PKT ENF C F + G FHRVI FM
Sbjct: 1 FLDIT---TNLGRIVIELFGDEAPKTVENFLSLCKKGF--------YDGTIFHRVIPGFM 49
Query: 80 IQGGDFVN 87
IQGGD
Sbjct: 50 IQGGDPTG 57
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) -
cyclophilin family [Posttranslational modification,
protein turnover, chaperones].
Length = 158
Score = 74.2 bits (183), Expect = 2e-18
Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 25 VGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
+ T G + EL+ D PKT NF Q F + G FHRVI FMIQGGD
Sbjct: 3 ILETNKGDITIELYPDKAPKTVANFLQLVKEGF--------YDGTIFHRVIPGFMIQGGD 54
Query: 85 F 85
Sbjct: 55 P 55
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional.
Length = 249
Score = 57.2 bits (138), Expect = 2e-11
Identities = 31/77 (40%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 4 WNQIQSQLR---NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRD 60
W Q R QN+ F DIS+G GR++FELF DVVP+T ENFR TG D
Sbjct: 37 WENYQKSHRMKEEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGID 96
Query: 61 ---AVPIGFKGASFHRV 74
V + + H V
Sbjct: 97 TNTGVKLDYLYTPVHHV 113
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like. Proteins
similar to Human cyclophilin-like peptidylprolyl cis-
trans isomerase (PPIL3). Members of this family lack a
key residue important for cyclosporin binding: the
tryptophan residue corresponding to W121 in human
hCyP-18a; most members have a histidine at this
position. The exact function of the protein is not
known.
Length = 153
Score = 55.5 bits (134), Expect = 2e-11
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G + ELF D PK ENF C + + G FHR IK FM+Q GD
Sbjct: 7 TNLGDIKIELFCDDCPKACENFLALCASGY--------YNGCIFHRNIKGFMVQTGD 55
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like:
cyclophilin 2-like peptidylprolyl cis- trans isomerase
(PPIase) domain similar to Schizosaccharomyces pombe
cyp-2. These proteins bind their respective SNW
chromatin binding protein in autologous systems, in a
CsA independent manner indicating interaction with a
surface outside the PPIase active site. SNW proteins
play a basic and broad range role in signaling.
Length = 146
Score = 52.2 bits (125), Expect = 5e-10
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G + EL+ + PKT +NF + + + G FHR+IKDFMIQGGD
Sbjct: 4 TTMGEITLELYWNHAPKTCKNFYELAKRGY--------YNGTIFHRLIKDFMIQGGD 52
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a modified RING finger domain. This group
includes the nuclear proteins, Human hCyP-60 and
Caenorhabditis elegans MOG-6 which, compared to the
archetypal cyclophilin Human cyclophilin A exhibit
reduced peptidylprolyl cis- trans isomerase activity
and lack a residue important for cyclophilin binding.
Human hCyP-60 has been shown to physically interact
with the proteinase inhibitor peptide eglin c and; C.
elegans MOG-6 to physically interact with MEP-1, a
nuclear zinc finger protein. MOG-6 has been shown to
function in germline sex determination.
Length = 159
Score = 52.0 bits (125), Expect = 7e-10
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T G + EL D PK ENF + C + + FHR I++FMIQGGD
Sbjct: 6 TNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTI--------FHRSIRNFMIQGGD 54
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like:
cyclophilin-type A-like peptidylprolyl cis- trans
isomerase (PPIase) domain similar to the cytosolic E.
coli cyclophilin A and Streptomyces antibioticus
SanCyp18. Compared to the archetypal cyclophilin Human
cyclophilin A, these have reduced affinity for
cyclosporin A. E. coli cyclophilin A has a similar
peptidylprolyl cis- trans isomerase activity to the
human cyclophilin A. Most members of this subfamily
contain a phenylalanine residue at the position
equivalent to Human cyclophilin W121, where a
tyrptophan has been shown to be important for
cyclophilin binding.
Length = 155
Score = 50.9 bits (122), Expect = 2e-09
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T +G ++ EL+ D P T ENF + F + + FHRVI F+IQGG F
Sbjct: 4 TSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTI--------FHRVISGFVIQGGGF 53
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a WD40 domain. This group consists of several
hypothetical and putative eukaryotic and bacterial
proteins which have a cyclophilin domain and a WD40
domain. Function of the protein is not known.
Length = 148
Score = 49.4 bits (118), Expect = 7e-09
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T G + LF + PKT ENF + + FHRVIK FMIQ GD
Sbjct: 4 TTKGDIHIRLFPEEAPKTVENFTTHARNGY--------YNNTIFHRVIKGFMIQTGD 52
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like:
cyclophilin-type peptidylprolyl cis- trans isomerase)
(PPIase) domain similar to Caenorhabditis elegans
cyclophilin 16. C. elegans CeCYP-16, compared to the
archetypal cyclophilin Human cyclophilin A has, a
reduced peptidylprolyl cis- trans isomerase activity,
is cyclosporin insensitive and shows an altered
substrate preference favoring, hydrophobic, acidic or
amide amino acids. Most members of this subfamily have
a glutamate residue in the active site at the position
equivalent to a tryptophan (W121 in Human cyclophilin
A), which has been shown to be important for
cyclophilin binding.
Length = 171
Score = 47.7 bits (114), Expect = 3e-08
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T G + EL++ PK NF Q C + + FHRV+ F+IQGGD
Sbjct: 12 TTAGDIDIELWSKEAPKACRNFIQLCLEGY--------YDNTIFHRVVPGFIIQGGD 60
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B
(rotamase B); Provisional.
Length = 164
Score = 47.1 bits (112), Expect = 6e-08
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T G ++ + F D P+T +NF +C F + + FHRVI FMIQGG F
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTI--------FHRVINGFMIQGGGF 55
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type
peptidylprolyl cis- trans isomerase domain occuring
with a C-terminal RNA recognition motif domain (RRM).
This subfamily of the cyclophilin domain family
contains a number of eukaryotic cyclophilins having the
RRM domain including the nuclear proteins: human
hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis
elegans CeCyP-44 and Paramecium tetrurelia Kin241. The
Kin241 protein has been shown to have a role in cell
morphogenesis.
Length = 166
Score = 39.2 bits (92), Expect = 5e-05
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G ++ +LF D P NF + C ++ + F+ V KDF+ Q GD
Sbjct: 4 TTLGDLVIDLFTDECPLACLNFLKLCKLKY--------YNFCLFYNVQKDFIAQTGD 52
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A
(rotamase A); Provisional.
Length = 190
Score = 37.9 bits (88), Expect = 2e-04
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T G + EL + P + +NF + F + +FHRVI FMIQGG F
Sbjct: 35 TSAGNIELELNSQKAPVSVKNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGF 84
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like:
cyclophilin-type peptidylprolyl cis- trans isomerases
(cyclophilins) similar ot the Spinach thylakoid lumen
protein TLP40. Compared to the archetypal cyclophilin
Human cyclophilin A, these proteins have similar
peptidylprolyl cis- trans isomerase activity and
reduced affinity for cyclosporin A. Spinach TLP40 has
been shown to have a dual function as a folding
catalyst and regulator of dephosphorylation.
Length = 176
Score = 27.8 bits (62), Expect = 0.58
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 60 DAVPIGF-KGASFHRVIKDFMIQGGD 84
D V GF G FHRV F++Q GD
Sbjct: 27 DLVERGFYDGMEFHRVEGGFVVQTGD 52
>gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional.
Length = 137
Score = 27.3 bits (60), Expect = 0.77
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 22 DISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFH 72
D+ G E+G FE+ +++ + R G RR+ +P +GAS++
Sbjct: 65 DLFYGGGEMGAE-FEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYY 114
>gnl|CDD|218956 pfam06248, Zw10, Centromere/kinetochore Zw10. Zw10 and rough deal
proteins are both required for correct metaphase
check-pointing during mitosis. These proteins bind to
the centromere/kinetochore.
Length = 593
Score = 26.2 bits (58), Expect = 2.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 32 RMIFELFADVVPK 44
R IF+L+ DVVP
Sbjct: 486 RNIFQLYYDVVPT 498
>gnl|CDD|182407 PRK10359, PRK10359, lipopolysaccharide core biosynthesis protein;
Provisional.
Length = 232
Score = 25.5 bits (56), Expect = 4.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEF 57
T+ G+ I ++FA V +T + F G++
Sbjct: 52 TDYGKYILKVFAPKVKRTERFLKSFVKGDY 81
>gnl|CDD|214962 smart00995, AD, Anticodon-binding domain. This domain of
approximately 100 residues is conserved from plants to
humans. It is frequently found in association with Lsm
domain-containing proteins.
Length = 90
Score = 24.6 bits (54), Expect = 6.1
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 23 ISVGATEIGRMIFELFADVVPKTS 46
G + G+ IF+ A +P
Sbjct: 28 KGKGVSPEGQEIFDAIAKTIPDCR 51
>gnl|CDD|235325 PRK04974, PRK04974, glycerol-3-phosphate acyltransferase;
Validated.
Length = 818
Score = 25.2 bits (56), Expect = 6.3
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 7 IQSQLRNQNNPVVFFDISVG 26
+Q+ LR P+ + +G
Sbjct: 410 LQAMLRGSRRPITLVPVYIG 429
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 25.3 bits (55), Expect = 6.7
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 33 MIFELFADVVPKTSENFRQFCTGEFRRDAV 62
M L D+ E + F + +AV
Sbjct: 1787 MACLLKKDLAVFVEEVRKIFGSSHLDVEAV 1816
>gnl|CDD|233620 TIGR01890, N-Ac-Glu-synth, amino-acid N-acetyltransferase. This
model represents a clade of amino-acid
N-acetyltransferases acting mainly on glutamate in the
first step of the "acetylated" ornithine biosynthesis
pathway. For this reason it is also called
N-acetylglutamate synthase. The enzyme may also act on
aspartate [Amino acid biosynthesis, Glutamate family].
Length = 429
Score = 25.1 bits (55), Expect = 7.0
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 31 GRMIFELFADVVPKTSENFRQFCTGEFRRDAV 62
G + EL V +E T AV
Sbjct: 211 GTLAAELSPQEVESLAERLGSETTRRLLSAAV 242
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 24.8 bits (55), Expect = 7.3
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 48 NFRQFCTGEFRRDAVP 63
NF F GE R P
Sbjct: 379 NFPPFSVGETGRMGSP 394
>gnl|CDD|216207 pfam00940, RNA_pol, DNA-dependent RNA polymerase. This is a family
of single chain RNA polymerases.
Length = 394
Score = 24.9 bits (55), Expect = 7.5
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 5 NQIQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKT 45
QI+ QL+++ A + ++IFE +V P
Sbjct: 180 EQIKDQLKDKGTDEDKVLSYKAANYLAKIIFESIKEVFPGA 220
>gnl|CDD|221153 pfam11638, DnaA_N, DnaA N-terminal domain. This family of
proteins represents the N-terminal domain of DnaA, a
protein involved in the initiation of bacterial
chromosomal replication. The structure of this domain
is known. It is also found in three copies in some
proteins. The exact function of this domain is
uncertain but it has been suggested to play a role in
oligomerisation.
Length = 65
Score = 23.7 bits (52), Expect = 7.6
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 3 TWNQIQSQLRNQNNPVVF 20
W ++ +LR + F
Sbjct: 3 LWEKVLQRLRKELGEQTF 20
>gnl|CDD|224967 COG2056, COG2056, Predicted permease [General function prediction
only].
Length = 444
Score = 25.0 bits (55), Expect = 7.8
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 63 PIGFKGASFHRVIKDFMIQGGDFVNVSMLP 92
P+GF G F +I D + G ++V+ +P
Sbjct: 163 PVGF-GLIFQSIILDNINAAGVSLSVNQVP 191
>gnl|CDD|225488 COG2937, PlsB, Glycerol-3-phosphate O-acyltransferase [Lipid
metabolism].
Length = 810
Score = 24.7 bits (54), Expect = 8.7
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 7 IQSQLRNQNNPVVFFDISVG---ATEIGRMIFELFADVVPKTSENFRQ 51
+Q+ LR + P++ + +G E+G EL K E+ R
Sbjct: 404 LQAMLRGRTRPILLVPVYIGYEHVHEVGTYAKELRG--ATKEKESLRW 449
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.435
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,751,505
Number of extensions: 389104
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 32
Length of query: 92
Length of database: 10,937,602
Length adjustment: 59
Effective length of query: 33
Effective length of database: 8,320,716
Effective search space: 274583628
Effective search space used: 274583628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)