RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8675
(92 letters)
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 147 bits (372), Expect = 2e-46
Identities = 48/81 (59%), Positives = 65/81 (80%)
Query: 7 IQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGF 66
+ + L N +NPVVF DI++G +G+ FELF ++VPKTSENFRQFCTGE++ + +P+G+
Sbjct: 50 LSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGY 109
Query: 67 KGASFHRVIKDFMIQGGDFVN 87
K FHRVIK+FMIQGGDF+N
Sbjct: 110 KNTIFHRVIKEFMIQGGDFIN 130
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 141 bits (359), Expect = 5e-45
Identities = 59/76 (77%), Positives = 68/76 (89%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ NPVVFFD+S+G E+GRM ELFADVVPKT+ENFRQFCTGEFR+D VPIG+KG++F
Sbjct: 6 SSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTF 65
Query: 72 HRVIKDFMIQGGDFVN 87
HRVIKDFMIQGGDFVN
Sbjct: 66 HRVIKDFMIQGGDFVN 81
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 137 bits (348), Expect = 3e-43
Identities = 44/82 (53%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIG 65
+ L Q NPVV+FDIS+G T GR+ ELFAD VP T+ENFR CTGE + P+
Sbjct: 11 RENLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLC 70
Query: 66 FKGASFHRVIKDFMIQGGDFVN 87
+ G+ FHR+I FMIQGGDF
Sbjct: 71 YTGSFFHRIIPQFMIQGGDFTR 92
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 136 bits (345), Expect = 1e-42
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 9 SQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIG 65
S L + +P FDI + +GR++F+LF+D+ PKT +NF C+GE + +
Sbjct: 12 SGLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLC 71
Query: 66 FKGASFHRVIKDFMIQGGDFVN 87
+KG++FHRV+K+FMIQGGDF
Sbjct: 72 YKGSTFHRVVKNFMIQGGDFSE 93
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 135 bits (343), Expect = 1e-42
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 11 LRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFK 67
+ ++ VF D+++ GR++ EL+ D+ P+T NF CTG + P+ +K
Sbjct: 1 MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYK 60
Query: 68 GASFHRVIKDFMIQGGDFVN 87
G++FHRVIK+FMIQGGDF
Sbjct: 61 GSTFHRVIKNFMIQGGDFTK 80
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB:
2wfj_A* 2gw2_A
Length = 179
Score = 135 bits (342), Expect = 2e-42
Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFKGA 69
P FFDI++ GR++FELF+DV PKT ENFR CTGE + P+ +K
Sbjct: 6 KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSC 65
Query: 70 SFHRVIKDFMIQGGDFVN 87
FHRV+KDFM+QGGDF
Sbjct: 66 LFHRVVKDFMVQGGDFSE 83
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 140 bits (354), Expect = 3e-42
Identities = 46/83 (55%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPI 64
Q++ N +NP VFFD+ +G +GR++ ELFAD+VPKT+ENFR CTGE P+
Sbjct: 7 QAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPL 66
Query: 65 GFKGASFHRVIKDFMIQGGDFVN 87
FKG FHR+IK FMIQGGDF N
Sbjct: 67 HFKGCPFHRIIKKFMIQGGDFSN 89
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 132 bits (335), Expect = 2e-41
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 15 NNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHR 73
VFFDIS+ + GR+IFELF+D+ P+T ENFR CTGE + +K + FHR
Sbjct: 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
Query: 74 VIKDFMIQGGDFVN 87
+I FM QGGD N
Sbjct: 62 IIPQFMCQGGDITN 75
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 133 bits (336), Expect = 6e-41
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEF------------RRD 60
+ NP V+ DI + IGR+ +LF D P ENF Q G+
Sbjct: 11 SGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNR 70
Query: 61 AVPIGFKGASFHRVIKDFMIQGGDFVN 87
+ ++G FH V+ + I GD N
Sbjct: 71 HINRTYEGCKFHNVLHNNYIVSGDIYN 97
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity,
rotamase, RNA-binding, cyclosporin, cyclophilin,
beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 131 bits (331), Expect = 8e-41
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 5/81 (6%)
Query: 7 IQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGF 66
++++ + +N P VFFDI +G + GR++ EL +D+VP+T+ENFR CTGE G+
Sbjct: 1 MRTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGER-----GFGY 55
Query: 67 KGASFHRVIKDFMIQGGDFVN 87
FHRVI FM QGGDFV
Sbjct: 56 HNCCFHRVIPQFMCQGGDFVK 76
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 130 bits (330), Expect = 1e-40
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHR 73
VFFDI++G GR++ EL+ DVVPKT+ NFR CTGE + P+ FKG+ FHR
Sbjct: 3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62
Query: 74 VIKDFMIQGGDFVN 87
+I +FMIQGGDF
Sbjct: 63 IIPNFMIQGGDFTR 76
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich,
cyclosporin, endoplasmic reticulum, glycoprot
isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A*
1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 126 bits (320), Expect = 6e-39
Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
V+FD+ +G ++GR+IF LF VPKT +NF TGE G+K + FHRVI
Sbjct: 15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVI 69
Query: 76 KDFMIQGGDFVN 87
KDFMIQGGDF
Sbjct: 70 KDFMIQGGDFTR 81
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 126 bits (318), Expect = 7e-39
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
V+FD+ + + +GR+ LF P T+ENFRQ CTGE G+K + FHRVI
Sbjct: 11 TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEH-----GFGYKDSIFHRVI 65
Query: 76 KDFMIQGGDFVN 87
++FMIQGGDF N
Sbjct: 66 QNFMIQGGDFTN 77
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 125 bits (317), Expect = 9e-39
Identities = 38/72 (52%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP V+ DI +G GR+ L +DVVP T+ENFR CT E GFKG+SFHR+I
Sbjct: 11 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK-----GFGFKGSSFHRII 65
Query: 76 KDFMIQGGDFVN 87
FM QGGDF N
Sbjct: 66 PQFMCQGGDFTN 77
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 124 bits (313), Expect = 3e-38
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-----GFGYKGSTFHRVI 57
Query: 76 KDFMIQGGDFVN 87
FM Q GDF N
Sbjct: 58 PSFMCQAGDFTN 69
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 123 bits (311), Expect = 1e-37
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP VFFDI+V +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I
Sbjct: 22 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEK-----GFGYKGSCFHRII 76
Query: 76 KDFMIQGGDFVN 87
FM QGGDF
Sbjct: 77 PGFMCQGGDFTR 88
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 122 bits (308), Expect = 2e-37
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
VFF+IS+ GR++F+L+ + VPKT++NFR+ TG+ G+K + FHRVI
Sbjct: 2 MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH-----GFGYKDSIFHRVI 56
Query: 76 KDFMIQGGDFVN 87
FM+QGGDF
Sbjct: 57 PQFMLQGGDFTR 68
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI,
UW, decode, cytoplasm, rotamase, structural genomics;
HET: PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 122 bits (309), Expect = 2e-37
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 9 SQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKG 68
+ + + V+FD+ +GR++ +L D+VPKT++NFR C G+KG
Sbjct: 20 GSMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPK-----GEGYKG 74
Query: 69 ASFHRVIKDFMIQGGDFVN 87
++FHR+I FM+QGGD+
Sbjct: 75 STFHRIIPGFMVQGGDYTA 93
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding,
Asp F 11, allergen, rotamase; 1.85A {Aspergillus
fumigatus} SCOP: b.62.1.1
Length = 172
Score = 118 bits (299), Expect = 6e-36
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 10/78 (12%)
Query: 15 NNPVVFFDIS-----VGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGA 69
+ VFFD+ T++GR++F LF VPKT++NFR+ C G++ +
Sbjct: 1 SMSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRP-----AGEGYRES 55
Query: 70 SFHRVIKDFMIQGGDFVN 87
+FHR+I +FMIQGGDF
Sbjct: 56 TFHRIIPNFMIQGGDFTR 73
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP:
b.62.1.1
Length = 176
Score = 80.8 bits (200), Expect = 4e-21
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFH 72
P D ++ T +G + +LF PKT ENF + + G +FH
Sbjct: 13 QAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFH 64
Query: 73 RVIKDFMIQGGDF 85
R+IK FMIQ GD
Sbjct: 65 RIIKGFMIQTGDP 77
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium,
SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 76.1 bits (188), Expect = 2e-19
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T +G + LF KT +NF + + FHRVIK FM+Q GD
Sbjct: 12 TTMGDIHISLFYKECKKTVQNFSVHSINGY--------YNNCIFHRVIKHFMVQTGDP 61
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 74.3 bits (183), Expect = 2e-18
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ P V+ + T +G ++ EL+ PKT +NF + + + G F
Sbjct: 7 DSWQPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKF 53
Query: 72 HRVIKDFMIQGGDF 85
HR+IKDFMIQGGD
Sbjct: 54 HRIIKDFMIQGGDP 67
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 73.1 bits (180), Expect = 7e-18
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T G + EL AD+ P+ ++F + C ++ F FHR I++FMIQGG
Sbjct: 13 TTQGSLNIELHADMAPRACDSFLRLCAVKY--------FDDTIFHRCIRNFMIQGGRAEL 64
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 72.2 bits (178), Expect = 7e-18
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ P V+ + T +G ++ EL+ PKT +NF + + + G F
Sbjct: 7 DSWQPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKF 53
Query: 72 HRVIKDFMIQGGDF 85
HR+IKDFMIQGGD
Sbjct: 54 HRIIKDFMIQGGDP 67
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 70.8 bits (174), Expect = 4e-17
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
+ ++F T G + FELF PK +NF + +K F
Sbjct: 7 HSSGRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGY--------YKNTIF 58
Query: 72 HRVIKDFMIQGGD 84
H+ IK F+IQGGD
Sbjct: 59 HKNIKGFIIQGGD 71
>2b71_A Cyclophilin-like protein; structural genomics, structural
genomics consortium, SGC, isomerase; 2.50A {Plasmodium
yoelii} SCOP: b.62.1.1
Length = 196
Score = 71.2 bits (175), Expect = 4e-17
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T +G EL+ PKT NF C F + FHRVI +F+IQGGD
Sbjct: 45 TNLGDFEVELYWYHSPKTCLNFYTLCEMGF--------YDNTIFHRVIPNFVIQGGDP 94
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 66.4 bits (163), Expect = 1e-15
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T++G + E+F + PKT ENF C + + G FHR IK FM+Q GD
Sbjct: 7 TDVGDIKIEVFCERTPKTCENFLALCASNY--------YNGCIFHRNIKGFMVQTGD 55
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor
complex; HET: NIT; 1.70A {Escherichia coli} SCOP:
b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 65.7 bits (161), Expect = 2e-15
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
+ +P V T G + EL P + +NF + F + +FHR
Sbjct: 2 KGDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHR 48
Query: 74 VIKDFMIQGGDF 85
VI FMIQGG F
Sbjct: 49 VIPGFMIQGGGF 60
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase,
RV0009, rotamase, structural proteomics in europe,
spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 65.9 bits (161), Expect = 4e-15
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFK-------GASFHRVIKDFMI 80
T G + LF + PKT NF G GA FHRVI+ FMI
Sbjct: 30 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI 89
Query: 81 QGGD 84
QGGD
Sbjct: 90 QGGD 93
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 65.4 bits (160), Expect = 4e-15
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T G + EL++ PK NF Q C + + FHRV+ F++QGGD
Sbjct: 31 TTAGDIDIELWSKEAPKACRNFIQLCLEAY--------YDNTIFHRVVPGFIVQGGD 79
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 65.1 bits (159), Expect = 7e-15
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T G + EL D+ PKT ENF + C + + G FHR I++F+IQGGD
Sbjct: 26 TNKGDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGGD 74
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 64.1 bits (157), Expect = 1e-14
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
+V T G + EL PKT ENF + + G FHRVI
Sbjct: 3 GSMVELH-----TNHGVIKLELDEAKAPKTVENFLNYVKKGH--------YDGTIFHRVI 49
Query: 76 KDFMIQGGDF 85
FMIQGG F
Sbjct: 50 NGFMIQGGGF 59
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 64.8 bits (158), Expect = 2e-14
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G + EL+A P NF Q C + + FHRV+KDF++QGGD
Sbjct: 28 TSLGDLDVELWARECPLACRNFVQLCLEGY--------YVNTIFHRVVKDFIVQGGD 76
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 62.2 bits (152), Expect = 6e-14
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T G ++ + F D P+T +NF +C F + FHRVI FMIQGG F
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQGGGF 55
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 53.9 bits (129), Expect = 3e-10
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 12/76 (15%)
Query: 12 RNQNNPVVFFDISVGA---TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKG 68
+ V + + E L P T+ NF F + G
Sbjct: 166 LLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHF--------YDG 217
Query: 69 ASFHRVIKDFMIQGGD 84
R F++Q GD
Sbjct: 218 MEIQRSD-GFVVQTGD 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.064
Identities = 22/121 (18%), Positives = 34/121 (28%), Gaps = 45/121 (37%)
Query: 4 WNQIQSQLRN----------QNNP---VVFFDISVGATEI----GRMIFELFADVVPKTS 46
WN+ + ++ NNP + F G I MIFE D KT
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK-RIRENYSAMIFETIVDGKLKTE 1704
Query: 47 ENFRQFCTGEFRRDAVPIGFKG--------------------ASFHRVIKD-FMIQGGDF 85
+ F+ E + F+ A+F +K +I
Sbjct: 1705 KIFK-----EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF-EDLKSKGLIPADAT 1758
Query: 86 V 86
Sbjct: 1759 F 1759
Score = 28.9 bits (64), Expect = 0.22
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 24 SVG-----ATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
S+G A+ M E +VV +R G + AVP G S + +I
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVV-----FYR----GMTMQVAVPRDELGRSNYGMI 1810
Score = 25.0 bits (54), Expect = 5.3
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 27/92 (29%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVV--PKTSENFRQ---------F-----CTGEFRR 59
P GAT + + + A + + E+F F C +
Sbjct: 259 TPGELRSYLKGATGHSQGL--VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 60 DAVPIGFKGASFHRVIKDFMIQGGDFVNVSML 91
++P +++D ++ + V ML
Sbjct: 317 TSLPP--------SILEDS-LENNEGVPSPML 339
>3gi1_A LBP, laminin-binding protein of group A streptococci;
zinc-binding receptor, metal-binding, helical backbone,
alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB:
3hjt_A
Length = 286
Score = 25.7 bits (57), Expect = 2.2
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 69 ASFHRVIKDFMIQ-GGDFVNVSMLP 92
SF+ + + GD +V M+
Sbjct: 17 TSFY-PMYAMTKEVSGDLNDVRMIQ 40
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein,
metal binding protein; 2.40A {Streptococcus pneumoniae}
Length = 284
Score = 25.0 bits (55), Expect = 3.9
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 69 ASFHRVIKDFMIQ-GGDFVNVSMLP 92
SF+ I + + GD +V M+
Sbjct: 15 TSFY-PIYAMVKEVSGDLNDVRMIQ 38
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 24.9 bits (54), Expect = 5.4
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 10 QLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSE 47
+R++N V FF ++ ++++ ++VP +
Sbjct: 476 SIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNA 513
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 24.5 bits (52), Expect = 6.8
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 34 IFELFADVVPK-TSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 81
+ + ++ P TSE F + ++ + FKG ++DF++Q
Sbjct: 960 LANMLSNAFPHLTSEQIASFLSALTKQYKDLVVFKGT-----LRDFLVQ 1003
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 24.4 bits (52), Expect = 8.1
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 67 KGASFHRVIKDFMIQGGDFV 86
+G SF +++ G V
Sbjct: 930 RGLSFKEIMEMSPEAEGTVV 949
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 24.4 bits (52), Expect = 8.1
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 67 KGASFHRVIKDFMIQGGDFV 86
+GA+F ++ K + G +
Sbjct: 943 RGATFTQICKMTDVYEGSLI 962
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix,
antiparallel-coiled-COI domain, ATP-binding, helicase,
hydrolase; 3.39A {Saccharomyces cerevisiae}
Length = 1108
Score = 24.4 bits (52), Expect = 8.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 67 KGASFHRVIKDFMIQGGDFV 86
+GA+F ++ K + G +
Sbjct: 1041 RGATFTQICKMTDVYEGSLI 1060
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.435
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,429,580
Number of extensions: 74488
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 50
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)