RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8675
(92 letters)
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 79.5 bits (195), Expect = 6e-21
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCT---GEFRRDAVPIGFKGAS 70
++ VF D+++ GR++ EL+ D+ P+T NF CT G + P+ +KG++
Sbjct: 1 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 60
Query: 71 FHRVIKDFMIQGGDFVN 87
FHRVIK+FMIQGGDF
Sbjct: 61 FHRVIKNFMIQGGDFTK 77
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 79.5 bits (195), Expect = 8e-21
Identities = 46/83 (55%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE---FRRDAVPI 64
Q++ N +NP VFFD+ +G +GR++ ELFAD+VPKT+ENFR CTGE P+
Sbjct: 6 QAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPL 65
Query: 65 GFKGASFHRVIKDFMIQGGDFVN 87
FKG FHR+IK FMIQGGDF N
Sbjct: 66 HFKGCPFHRIIKKFMIQGGDFSN 88
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 78.0 bits (191), Expect = 3e-20
Identities = 47/79 (59%), Positives = 63/79 (79%)
Query: 7 IQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGF 66
+ + L N +NPVVF DI++G +G+ FELF ++VPKTSENFRQFCTGE++ + +P+G+
Sbjct: 7 LSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGY 66
Query: 67 KGASFHRVIKDFMIQGGDF 85
K FHRVIK+FMIQGGDF
Sbjct: 67 KNTIFHRVIKEFMIQGGDF 85
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 76.8 bits (188), Expect = 6e-20
Identities = 57/70 (81%), Positives = 65/70 (92%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NPVVFFD+S+G E+GRM ELFADVVPKT+ENFRQFCTGEFR+D VPIG+KG++FHRVI
Sbjct: 6 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI 65
Query: 76 KDFMIQGGDF 85
KDFMIQGGDF
Sbjct: 66 KDFMIQGGDF 75
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo
sapiens) [TaxId: 9606]}
Length = 164
Score = 73.3 bits (179), Expect = 1e-18
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI
Sbjct: 2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-----GFGYKGSTFHRVI 56
Query: 76 KDFMIQGGDFVN 87
FM Q GDF N
Sbjct: 57 PSFMCQAGDFTN 68
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 69.7 bits (170), Expect = 3e-17
Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFFDI+ +G + F+LF DVVPKT+ NFR CTGE G+ G+ FHRVI DF
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEK-----GFGYAGSHFHRVIPDF 58
Query: 79 MIQGGDFVN 87
M+QGGDF
Sbjct: 59 MLQGGDFTA 67
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic)
{Caenorhabditis elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 69.5 bits (169), Expect = 4e-17
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHR 73
VFFDI++G GR++ EL+ DVVPKT+ NFR CTGE + P+ FKG+ FHR
Sbjct: 3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62
Query: 74 VIKDFMIQGGDFVN 87
+I +FMIQGGDF
Sbjct: 63 IIPNFMIQGGDFTR 76
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 69.5 bits (169), Expect = 4e-17
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ +G IGR++ LF VPKT+ NF + + G+ G+ FHRVI DF
Sbjct: 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELA-----KKPKGEGYPGSKFHRVIADF 63
Query: 79 MIQGGDFVN 87
MIQGGDF
Sbjct: 64 MIQGGDFTR 72
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 69.1 bits (168), Expect = 5e-17
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHRV 74
VFFDIS+ + GR+IFELF+D+ P+T ENFR CTGE + +K + FHR+
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRI 62
Query: 75 IKDFMIQGGDFVN 87
I FM QGGD N
Sbjct: 63 IPQFMCQGGDITN 75
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo
sapiens) [TaxId: 9606]}
Length = 161
Score = 66.8 bits (162), Expect = 4e-16
Identities = 37/72 (51%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP V+ DI +G GR+ L +DVVP T+ENFR CT E FKG+SFHR+I
Sbjct: 1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-----FKGSSFHRII 55
Query: 76 KDFMIQGGDFVN 87
FM QGGDF N
Sbjct: 56 PQFMCQGGDFTN 67
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 67.2 bits (163), Expect = 4e-16
Identities = 38/70 (54%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
VFFD+ +G ++GR++ LF +VVPKT ENF TGE G+KG+ FHRVI
Sbjct: 7 TDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEK-----GYGYKGSIFHRVI 61
Query: 76 KDFMIQGGDF 85
KDFMIQGGDF
Sbjct: 62 KDFMIQGGDF 71
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 65.3 bits (158), Expect = 1e-15
Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
V+FDI++G +GR++ LF + VPKT ENF+Q +GE G+KG+ FHRVI
Sbjct: 5 TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGEN-----GFGYKGSIFHRVI 59
Query: 76 KDFMIQGGDFVN 87
++FMIQGGDF N
Sbjct: 60 RNFMIQGGDFTN 71
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans
isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 59.4 bits (143), Expect = 2e-13
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFH 72
+ P V+ + T +G ++ EL+ PKT +NF + + + G FH
Sbjct: 8 SWQPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKFH 54
Query: 73 RVIKDFMIQGGDFVN 87
R+IKDFMIQGGD
Sbjct: 55 RIIKDFMIQGGDPTG 69
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 56.4 bits (135), Expect = 4e-12
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 10/74 (13%)
Query: 19 VFFDIS-----VGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
VFFD+ T++GR++F LF VPKT++NFR+ C ++ ++FHR
Sbjct: 4 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-----YRESTFHR 58
Query: 74 VIKDFMIQGGDFVN 87
+I +FMIQGGDF
Sbjct: 59 IIPNFMIQGGDFTR 72
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 56.3 bits (135), Expect = 5e-12
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T G + EL D+ PKT ENF + C + + G FHR I++F+IQGGD
Sbjct: 7 TNKGDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGGDP 56
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 53.3 bits (127), Expect = 6e-11
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGE-------FRRDAVPIGFKGASFHRVIKDFMI 80
T G + LF + PKT NF G + GA FHRVI+ FMI
Sbjct: 10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI 69
Query: 81 QGGDF 85
QGGD
Sbjct: 70 QGGDP 74
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and
WD repeat-containing protein 1, PPWD1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 47.7 bits (112), Expect = 7e-09
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
P D ++ T +G + +LF PKT ENF + + G +FHR+I
Sbjct: 4 GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRII 55
Query: 76 KDFMIQGGDFVNVSM 90
K FMIQ GD M
Sbjct: 56 KGFMIQTGDPTGTGM 70
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 46.5 bits (109), Expect = 2e-08
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
+ +P V T G + EL P + +NF + F + +FHR
Sbjct: 2 KGDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHR 48
Query: 74 VIKDFMIQGGDFVNVSM 90
VI FMIQGG F
Sbjct: 49 VIPGFMIQGGGFTEQMQ 65
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 45.6 bits (107), Expect = 4e-08
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T++G + E+F + PKT ENF C + + FHR IK FM+Q GD
Sbjct: 7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCI--------FHRNIKGFMVQTGDP 56
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 43.7 bits (102), Expect = 2e-07
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 81
T G ++ + F D P+T +NF +C F + FHRVI FMIQ
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQ 51
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 39.5 bits (91), Expect = 8e-06
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFC 53
T +G + LF KT +NF
Sbjct: 8 TTMGDIHISLFYKECKKTVQNFSVHS 33
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 36.0 bits (82), Expect = 2e-04
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCT-GEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T +G EL+ PKT NF C G + +GG
Sbjct: 23 TNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKS 81
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 89
Score = 22.8 bits (49), Expect = 5.1
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 23 ISVGATEIGRMIFELF 38
IS G IG +I E
Sbjct: 14 ISAGDQSIGDLIAEAM 29
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 22.7 bits (48), Expect = 9.6
Identities = 2/23 (8%), Positives = 5/23 (21%)
Query: 69 ASFHRVIKDFMIQGGDFVNVSML 91
R + G + +
Sbjct: 8 GGVTRHVPLIEPLPGRRIPLVEF 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.142 0.435
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 349,523
Number of extensions: 13706
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 24
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)