BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8677
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3
Length = 1181
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 54/80 (67%)
Query: 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
++ VG+ +A QF+E +PHPRLW+LLA+ +L L L AEQA V C+DY G++ +K L L
Sbjct: 678 IEKVGIKDASQFIEDNPHPRLWRLLAEAALQKLDLYTAEQAFVRCKDYQGIKFVKRLGKL 737
Query: 63 PDDIMKHAYIAQHQGRFQTA 82
+ MK A + + GRF+ A
Sbjct: 738 LSESMKQAEVVGYFGRFEEA 757
>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35 PE=1
SV=1
Length = 1170
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
++ VG+ +A QF+E +PHPRLW+LLA+ +L L L A+QA V C+DY G++ +K L L
Sbjct: 667 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLYTAQQAFVRCKDYQGIKFVKRLGNL 726
Query: 63 PDDIMKHAYIAQHQGRFQTA 82
+ MK A + + GRF+ A
Sbjct: 727 QSESMKQAEVIAYFGRFEEA 746
>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2 SV=3
Length = 1181
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
++ VG+ +A QF+E +PHPRLW+LLA+ +L L L A+QA V C+DY G++ +K L L
Sbjct: 678 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLYTAQQAFVRCKDYQGIKFVKLLGNL 737
Query: 63 PDDIMKHAYIAQHQGRFQTA 82
+ MK A + + GRF+ A
Sbjct: 738 QSESMKQAEVIAYFGRFEDA 757
>sp|Q96UP2|NEP1_CANGA Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=NEP1 PE=3 SV=1
Length = 229
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 20 HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQ 76
PRL+ +L + SL+ + N +L+NC D+ G+ LR + DI + HQ
Sbjct: 22 EPRLYVVLCEASLETYTSNDHRTSLLNCDDHQGI-----LRKMGRDIAEARPDITHQ 73
>sp|P35605|COPB2_BOVIN Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3
Length = 906
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 8 LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIM 67
L A+Q + WK LA+ ++ A++ L + QDY GL L+ + +
Sbjct: 654 LKIAYQLAVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNASMVN 713
Query: 68 KHAYIAQHQGRFQTA 82
K A A+ G+ A
Sbjct: 714 KLAEGAERDGKNNVA 728
>sp|Q5R664|COPB2_PONAB Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1
Length = 906
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 11 AFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHA 70
A+Q + WK LA+ ++ A++ L + QDY GL L+ + + + K A
Sbjct: 657 AYQLAVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNANMVNKLA 716
Query: 71 YIAQHQGRFQTA 82
A+ G+ A
Sbjct: 717 EGAERDGKNNVA 728
>sp|Q4R4I8|COPB2_MACFA Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1
Length = 906
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 11 AFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHA 70
A+Q + WK LA+ ++ A++ L + QDY GL L+ + + + K A
Sbjct: 657 AYQLAVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNANMVNKLA 716
Query: 71 YIAQHQGRFQTA 82
A+ G+ A
Sbjct: 717 EGAERDGKNNVA 728
>sp|P35606|COPB2_HUMAN Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2
Length = 906
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 11 AFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHA 70
A+Q + WK LA+ ++ A++ L + QDY GL L+ + + + K A
Sbjct: 657 AYQLAVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNANMVNKLA 716
Query: 71 YIAQHQGRFQTA 82
A+ G+ A
Sbjct: 717 EGAERDGKNNVA 728
>sp|O35142|COPB2_RAT Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3
Length = 905
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 11 AFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHA 70
A+Q + WK LA+ ++ + A++ L + QDY GL L+ + + K A
Sbjct: 657 AYQLAVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLLLLATASGNASMVNKLA 716
Query: 71 YIAQHQGRFQTA 82
A+ G+ A
Sbjct: 717 EGAERDGKNNVA 728
>sp|O55029|COPB2_MOUSE Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2
Length = 905
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 11 AFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHA 70
A+Q + WK LA+ ++ + A++ L + QDY GL L+ + + K A
Sbjct: 657 AYQLAVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLLLLATASGNASMVNKLA 716
Query: 71 YIAQHQGRFQTA 82
A+ G+ A
Sbjct: 717 EGAERDGKNNVA 728
>sp|Q9CAA0|COB21_ARATH Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2
SV=2
Length = 920
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 15 VEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQ 74
VEA + WK L + ++ L+ AE+ + + D +GL L+ S D +MK A +A+
Sbjct: 662 VEAQNESK-WKQLGELAMSSGKLDMAEECMRHAMDLSGLLLLYSSLGDADGMMKLAALAK 720
Query: 75 HQGRFQTAVYC 85
QG+ A C
Sbjct: 721 EQGKNNVAFLC 731
>sp|P22817|IDE_DROME Insulin-degrading enzyme OS=Drosophila melanogaster GN=Ide PE=1
SV=4
Length = 990
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 34 LLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
+L LN+ E++L + +DY GLQL L+ L
Sbjct: 21 ILRLNNIEKSLQDTRDYRGLQLENGLKVL 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,831,111
Number of Sequences: 539616
Number of extensions: 1126344
Number of successful extensions: 3309
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3292
Number of HSP's gapped (non-prelim): 17
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)