Query psy8677
Match_columns 99
No_of_seqs 103 out of 177
Neff 5.3
Searched_HMMs 46136
Date Sat Aug 17 00:54:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2041|consensus 99.9 4.5E-25 9.7E-30 189.3 6.1 88 2-89 673-762 (1189)
2 KOG1538|consensus 99.7 4E-17 8.6E-22 140.1 4.7 82 2-83 566-652 (1081)
3 KOG1524|consensus 99.7 3.3E-16 7.1E-21 131.8 8.3 91 2-92 583-682 (737)
4 PF04053 Coatomer_WDAD: Coatom 98.7 2.4E-08 5.3E-13 82.1 5.3 81 3-83 329-409 (443)
5 KOG3616|consensus 98.3 1.2E-06 2.6E-11 77.6 5.7 82 2-83 454-551 (1636)
6 KOG0292|consensus 97.5 0.00011 2.4E-09 65.8 3.9 56 2-57 653-708 (1202)
7 KOG3617|consensus 97.4 0.00047 1E-08 62.0 6.9 88 3-90 739-829 (1416)
8 KOG0276|consensus 97.2 0.0011 2.5E-08 57.6 7.2 57 3-59 648-704 (794)
9 PLN03081 pentatricopeptide (PP 91.3 1.5 3.3E-05 37.2 8.4 77 4-88 474-555 (697)
10 TIGR02552 LcrH_SycD type III s 91.2 1.5 3.2E-05 28.6 6.8 73 3-83 28-105 (135)
11 PLN03077 Protein ECB2; Provisi 90.5 1.7 3.8E-05 37.7 8.2 72 3-83 636-711 (857)
12 TIGR02521 type_IV_pilW type IV 88.9 3.7 8E-05 27.7 7.4 44 4-47 43-91 (234)
13 cd00189 TPR Tetratricopeptide 88.6 2.8 6.1E-05 23.3 5.9 73 3-83 11-88 (100)
14 PRK15359 type III secretion sy 88.1 3.5 7.7E-05 28.3 7.0 72 4-83 36-112 (144)
15 PF14559 TPR_19: Tetratricopep 85.9 2.5 5.4E-05 24.5 4.6 48 2-49 1-53 (68)
16 TIGR02521 type_IV_pilW type IV 85.8 4.8 0.0001 27.1 6.5 17 67-83 173-189 (234)
17 PRK11788 tetratricopeptide rep 85.7 3.1 6.7E-05 31.8 6.1 44 4-47 153-206 (389)
18 PRK11447 cellulose synthase su 85.1 3.6 7.7E-05 37.4 7.0 46 3-48 584-630 (1157)
19 PF11349 DUF3151: Protein of u 83.1 2.8 6.1E-05 29.9 4.4 47 12-59 26-73 (129)
20 PF09976 TPR_21: Tetratricopep 82.5 8.3 0.00018 26.1 6.6 36 14-49 37-76 (145)
21 PRK10747 putative protoheme IX 82.5 9.7 0.00021 30.4 7.9 72 5-87 307-387 (398)
22 TIGR02917 PEP_TPR_lipo putativ 80.3 14 0.00029 30.3 8.1 44 4-47 579-627 (899)
23 PF12895 Apc3: Anaphase-promot 80.0 3.6 7.9E-05 25.2 3.8 71 4-83 1-78 (84)
24 PF13414 TPR_11: TPR repeat; P 79.8 6 0.00013 23.0 4.5 56 20-83 2-58 (69)
25 PF07719 TPR_2: Tetratricopept 79.5 5.5 0.00012 20.0 3.8 27 21-47 1-27 (34)
26 PF13432 TPR_16: Tetratricopep 78.1 3.3 7.2E-05 24.0 3.0 51 26-87 2-57 (65)
27 PF09976 TPR_21: Tetratricopep 77.6 8.4 0.00018 26.1 5.4 43 3-45 96-142 (145)
28 PLN03088 SGT1, suppressor of 77.3 11 0.00024 29.9 6.7 73 3-83 13-90 (356)
29 TIGR02917 PEP_TPR_lipo putativ 77.3 9.4 0.0002 31.2 6.3 86 2-87 32-151 (899)
30 KOG0985|consensus 76.8 5.5 0.00012 37.6 5.3 47 5-51 1088-1134(1666)
31 PF13429 TPR_15: Tetratricopep 75.4 4.8 0.0001 29.9 3.9 27 67-93 252-280 (280)
32 smart00299 CLH Clathrin heavy 74.9 5.2 0.00011 26.8 3.7 28 6-33 110-137 (140)
33 PRK11788 tetratricopeptide rep 74.8 25 0.00053 26.8 7.8 47 3-49 191-242 (389)
34 PF13371 TPR_9: Tetratricopept 74.7 12 0.00025 21.9 4.9 47 2-48 5-56 (73)
35 PF13428 TPR_14: Tetratricopep 73.9 7.7 0.00017 21.3 3.7 27 21-47 1-27 (44)
36 PF13432 TPR_16: Tetratricopep 72.6 7.3 0.00016 22.4 3.5 45 3-47 8-57 (65)
37 PF12862 Apc5: Anaphase-promot 72.1 5.8 0.00013 25.5 3.2 69 29-97 6-77 (94)
38 TIGR00990 3a0801s09 mitochondr 71.2 22 0.00048 29.8 7.2 44 4-47 377-425 (615)
39 PRK09782 bacteriophage N4 rece 71.0 19 0.00042 32.9 7.3 45 4-48 521-569 (987)
40 PF00637 Clathrin: Region in C 70.2 0.65 1.4E-05 31.2 -1.7 35 3-37 107-141 (143)
41 PRK10747 putative protoheme IX 69.0 32 0.00069 27.4 7.5 73 4-83 96-173 (398)
42 TIGR02795 tol_pal_ybgF tol-pal 68.5 22 0.00047 21.9 5.3 76 2-83 12-96 (119)
43 PF13429 TPR_15: Tetratricopep 68.2 1.7 3.6E-05 32.4 0.0 48 2-49 18-72 (280)
44 COG5010 TadD Flp pilus assembl 68.1 18 0.00039 28.5 5.7 73 3-83 111-188 (257)
45 PRK11189 lipoprotein NlpI; Pro 68.0 33 0.00072 26.2 7.1 71 5-83 77-152 (296)
46 PF00515 TPR_1: Tetratricopept 67.8 14 0.00031 18.6 3.8 27 21-47 1-27 (34)
47 PRK15174 Vi polysaccharide exp 67.7 39 0.00085 29.0 8.2 13 69-81 252-264 (656)
48 PRK15359 type III secretion sy 66.5 39 0.00083 23.1 6.7 59 21-87 24-84 (144)
49 PRK10153 DNA-binding transcrip 65.4 24 0.00052 29.9 6.3 54 19-83 418-473 (517)
50 KOG1538|consensus 65.1 6.5 0.00014 35.6 3.0 58 2-59 783-843 (1081)
51 PRK12370 invasion protein regu 64.1 43 0.00094 28.0 7.6 84 4-87 350-467 (553)
52 PF04733 Coatomer_E: Coatomer 63.9 15 0.00033 28.6 4.6 48 3-50 113-160 (290)
53 PRK15174 Vi polysaccharide exp 61.5 48 0.001 28.5 7.6 43 5-47 89-136 (656)
54 PRK10049 pgaA outer membrane p 60.6 46 0.00099 29.1 7.3 74 3-87 370-453 (765)
55 PRK11447 cellulose synthase su 60.3 50 0.0011 30.2 7.8 46 3-48 614-664 (1157)
56 TIGR00990 3a0801s09 mitochondr 60.0 59 0.0013 27.2 7.7 44 4-47 343-391 (615)
57 KOG2247|consensus 59.6 3.4 7.5E-05 35.8 0.3 63 21-83 3-65 (615)
58 smart00028 TPR Tetratricopepti 59.5 16 0.00034 16.2 3.3 26 22-47 2-27 (34)
59 PF05131 Pep3_Vps18: Pep3/Vps1 59.3 4.3 9.3E-05 29.0 0.7 22 2-23 113-134 (147)
60 KOG1840|consensus 58.3 66 0.0014 27.5 7.8 88 4-96 295-402 (508)
61 PRK02603 photosystem I assembl 55.7 66 0.0014 22.2 7.2 68 4-79 47-122 (172)
62 cd05804 StaR_like StaR_like; a 55.6 48 0.001 24.9 6.0 77 3-87 125-212 (355)
63 TIGR00540 hemY_coli hemY prote 55.4 38 0.00082 27.0 5.6 70 4-82 165-239 (409)
64 PF12895 Apc3: Anaphase-promot 54.9 24 0.00052 21.4 3.6 44 3-46 36-83 (84)
65 PRK10049 pgaA outer membrane p 54.7 74 0.0016 27.8 7.7 71 4-83 61-136 (765)
66 CHL00033 ycf3 photosystem I as 54.6 67 0.0015 22.0 6.5 79 4-83 47-133 (168)
67 PF04053 Coatomer_WDAD: Coatom 54.0 34 0.00073 28.5 5.3 63 5-88 308-374 (443)
68 PF04840 Vps16_C: Vps16, C-ter 53.2 57 0.0012 25.9 6.3 64 3-83 219-282 (319)
69 PRK12370 invasion protein regu 52.9 91 0.002 26.0 7.7 41 7-47 319-364 (553)
70 PF13431 TPR_17: Tetratricopep 47.3 38 0.00082 17.8 3.2 27 15-41 6-33 (34)
71 PF13181 TPR_8: Tetratricopept 47.0 30 0.00064 17.2 2.7 30 22-51 2-31 (34)
72 PRK10370 formate-dependent nit 46.0 55 0.0012 23.8 4.8 73 15-87 66-170 (198)
73 PF13374 TPR_10: Tetratricopep 45.9 26 0.00055 17.9 2.3 20 68-87 7-28 (42)
74 TIGR00540 hemY_coli hemY prote 44.8 1.6E+02 0.0034 23.4 8.4 73 6-87 313-396 (409)
75 PF07721 TPR_4: Tetratricopept 44.5 18 0.00039 17.9 1.5 17 67-83 5-21 (26)
76 PRK15179 Vi polysaccharide bio 44.4 91 0.002 27.6 6.7 83 6-88 70-181 (694)
77 KOG2076|consensus 44.4 87 0.0019 28.9 6.6 68 6-83 187-261 (895)
78 PF13424 TPR_12: Tetratricopep 42.0 40 0.00087 19.9 3.1 60 22-87 6-72 (78)
79 COG4235 Cytochrome c biogenesi 39.9 46 0.001 26.6 3.9 37 14-50 148-185 (287)
80 KOG2376|consensus 39.2 66 0.0014 28.6 4.9 75 2-87 56-136 (652)
81 PF02259 FAT: FAT domain; Int 39.0 93 0.002 23.3 5.3 59 21-83 146-204 (352)
82 KOG1155|consensus 37.7 1.1E+02 0.0023 26.8 5.8 35 19-53 430-467 (559)
83 KOG2796|consensus 37.2 1.6E+02 0.0036 24.2 6.6 74 14-92 203-280 (366)
84 PLN03088 SGT1, suppressor of 36.4 87 0.0019 24.8 4.9 46 3-48 47-97 (356)
85 COG3071 HemY Uncharacterized e 35.1 2.2E+02 0.0048 24.0 7.2 61 17-88 324-388 (400)
86 KOG3616|consensus 34.8 1.1E+02 0.0023 28.9 5.6 81 3-83 743-844 (1636)
87 PHA02608 67 prohead core prote 33.6 41 0.00088 22.2 2.2 30 30-59 6-35 (80)
88 PLN03218 maturation of RBCL 1; 32.2 3.3E+02 0.0071 25.5 8.4 24 19-42 647-670 (1060)
89 TIGR02710 CRISPR-associated pr 31.5 3E+02 0.0066 22.8 7.6 28 67-94 250-280 (380)
90 cd08312 Death_MyD88 Death doma 30.4 1.2E+02 0.0027 19.1 4.1 38 21-62 16-53 (79)
91 PF09670 Cas_Cas02710: CRISPR- 29.9 2.5E+02 0.0055 22.7 6.7 92 3-94 142-275 (379)
92 PF07219 HemY_N: HemY protein 29.6 95 0.0021 20.4 3.6 33 26-58 64-96 (108)
93 PRK11189 lipoprotein NlpI; Pro 29.2 2.6E+02 0.0056 21.3 8.7 20 68-87 241-262 (296)
94 KOG0495|consensus 28.9 96 0.0021 28.4 4.3 41 6-46 665-710 (913)
95 PRK09782 bacteriophage N4 rece 28.9 3.1E+02 0.0067 25.4 7.7 43 6-48 490-536 (987)
96 KOG0543|consensus 28.8 1.7E+02 0.0037 24.6 5.6 62 25-87 249-317 (397)
97 PRK14574 hmsH outer membrane p 28.7 1.6E+02 0.0034 26.7 5.7 71 2-83 377-470 (822)
98 PF11768 DUF3312: Protein of u 27.5 63 0.0014 28.1 2.9 42 2-43 504-545 (545)
99 PF06169 DUF982: Protein of un 27.4 1.2E+02 0.0026 19.0 3.6 17 31-47 49-66 (76)
100 KOG2066|consensus 27.3 82 0.0018 28.9 3.6 55 5-61 674-728 (846)
101 TIGR03302 OM_YfiO outer membra 27.2 2.3E+02 0.005 20.0 6.4 58 19-87 31-96 (235)
102 PLN03081 pentatricopeptide (PP 27.2 2.9E+02 0.0063 23.5 6.9 44 4-47 271-316 (697)
103 PF10602 RPN7: 26S proteasome 26.8 78 0.0017 22.8 3.0 45 7-51 18-66 (177)
104 PF13176 TPR_7: Tetratricopept 26.3 1.1E+02 0.0023 15.9 3.5 23 24-46 2-24 (36)
105 PRK10803 tol-pal system protei 26.3 3E+02 0.0066 21.1 7.8 77 3-87 154-243 (263)
106 cd05804 StaR_like StaR_like; a 26.2 1.9E+02 0.004 21.7 5.1 46 3-48 159-213 (355)
107 smart00005 DEATH DEATH domain, 25.4 95 0.0021 19.0 2.9 37 9-49 5-41 (88)
108 PF13174 TPR_6: Tetratricopept 25.2 47 0.001 16.1 1.2 21 67-87 4-26 (33)
109 PF08631 SPO22: Meiosis protei 24.5 43 0.00094 25.4 1.3 22 30-51 2-23 (278)
110 cd08306 Death_FADD Fas-associa 24.1 63 0.0014 20.7 1.9 22 8-30 1-22 (86)
111 cd08315 Death_TRAILR_DR4_DR5 D 23.9 1.1E+02 0.0025 20.1 3.1 38 6-43 4-42 (96)
112 PF13934 ELYS: Nuclear pore co 23.9 1.2E+02 0.0025 22.8 3.5 34 2-35 150-186 (226)
113 PF03704 BTAD: Bacterial trans 23.4 1.6E+02 0.0035 19.4 3.8 61 3-67 73-138 (146)
114 PRK10370 formate-dependent nit 22.5 1.9E+02 0.0041 20.9 4.4 40 9-48 127-171 (198)
115 KOG2076|consensus 22.4 2.4E+02 0.0052 26.2 5.7 71 2-83 424-503 (895)
116 KOG0292|consensus 22.3 1.3E+02 0.0028 28.4 4.0 45 29-88 651-699 (1202)
117 PF10516 SHNi-TPR: SHNi-TPR; 21.3 1.6E+02 0.0035 16.3 2.9 25 25-49 5-29 (38)
118 PF09477 Type_III_YscG: Bacter 21.1 2.3E+02 0.0049 19.9 4.3 45 2-46 50-94 (116)
119 cd08802 Death_UNC5B Death doma 21.0 54 0.0012 21.6 1.1 16 19-38 18-33 (84)
120 PF08356 EF_assoc_2: EF hand a 20.6 78 0.0017 21.0 1.8 16 13-28 40-55 (89)
121 PF13512 TPR_18: Tetratricopep 20.5 1.9E+02 0.0041 20.7 3.9 30 18-47 7-36 (142)
122 KOG1129|consensus 20.4 39 0.00085 28.5 0.4 67 7-83 380-449 (478)
No 1
>KOG2041|consensus
Probab=99.91 E-value=4.5e-25 Score=189.34 Aligned_cols=88 Identities=44% Similarity=0.781 Sum_probs=86.2
Q ss_pred cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccc
Q psy8677 2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQT 81 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~E 81 (99)
++|+++++||.+|++++|||+||++||+.||.+++|++||.|||||+||.||.||++|.++-++++++|||.+|+|+|+|
T Consensus 673 Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 673 LVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred HHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh--hHhHHH
Q psy8677 82 AV--YCDIIE 89 (99)
Q Consensus 82 Ae--Y~~i~~ 89 (99)
|| |.++|+
T Consensus 753 aek~yld~dr 762 (1189)
T KOG2041|consen 753 AEKLYLDADR 762 (1189)
T ss_pred hhhhhhccch
Confidence 99 999886
No 2
>KOG1538|consensus
Probab=99.67 E-value=4e-17 Score=140.07 Aligned_cols=82 Identities=26% Similarity=0.352 Sum_probs=78.0
Q ss_pred cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC-----CHHHHHHHHHHHc
Q psy8677 2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP-----DDIMKHAYIAQHQ 76 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~-----~~~~~~Aei~ay~ 76 (99)
.||.+.++||++++|.+++.+||+.||..||++++|++|++||+|++|.+++.+|..|++.+ .+++..|+++||+
T Consensus 566 ~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~ 645 (1081)
T KOG1538|consen 566 YIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQ 645 (1081)
T ss_pred hhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhh
Confidence 48999999999999999999999999999999999999999999999999999999998764 3678999999999
Q ss_pred CCccchh
Q psy8677 77 GRFQTAV 83 (99)
Q Consensus 77 gkf~EAe 83 (99)
|||.||+
T Consensus 646 gKF~EAA 652 (1081)
T KOG1538|consen 646 GKFHEAA 652 (1081)
T ss_pred hhHHHHH
Confidence 9999999
No 3
>KOG1524|consensus
Probab=99.65 E-value=3.3e-16 Score=131.80 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=86.3
Q ss_pred cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccc
Q psy8677 2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQT 81 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~E 81 (99)
++..++|++|+++||...|+++|++||..|..+.++-++|.||+++.+.++|+||++||++++++.++||+..+.|+..|
T Consensus 583 ~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~~G~~~e 662 (737)
T KOG1524|consen 583 YLSSSKWEQAVRLCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLMLGRMLE 662 (737)
T ss_pred HhccchHHHHHHHHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHHhccchh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh---------hHhHHHHHh
Q psy8677 82 AV---------YCDIIEYLR 92 (99)
Q Consensus 82 Ae---------Y~~i~~~~~ 92 (99)
|| |+.+-.+|+
T Consensus 663 Ae~iLl~~gl~~qav~lni~ 682 (737)
T KOG1524|consen 663 AETILLHGGLIEQAVGLNIR 682 (737)
T ss_pred hhHHHHhcchHHHhhhhhhh
Confidence 99 777776665
No 4
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.69 E-value=2.4e-08 Score=82.09 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=66.0
Q ss_pred ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccch
Q psy8677 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTA 82 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EA 82 (99)
|+-|.++.|++.+...+.+.-|+.||..||..+|+++||+||.+++|+.++-|+-.+-.-...-...|+++.-.|++.-|
T Consensus 329 l~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~a 408 (443)
T PF04053_consen 329 LQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIA 408 (443)
T ss_dssp HHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHH
T ss_pred HhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHH
Confidence 67789999999999999999999999999999999999999999999999999988754434444666777767766655
Q ss_pred h
Q psy8677 83 V 83 (99)
Q Consensus 83 e 83 (99)
=
T Consensus 409 f 409 (443)
T PF04053_consen 409 F 409 (443)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>KOG3616|consensus
Probab=98.29 E-value=1.2e-06 Score=77.63 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=72.4
Q ss_pred cccccCHHHHHHHHHhC---C-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH-----------
Q psy8677 2 YLKNVGLNEAFQFVEAH---P-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI----------- 66 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~---~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~----------- 66 (99)
-|+.+.++.|..|.+.+ | ..+.|..||++||+.++|-||+.||.+++|+.++.|+..+-++-++.
T Consensus 454 aid~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f 533 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF 533 (1636)
T ss_pred ccccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence 37889999999998864 3 47899999999999999999999999999999999999998775422
Q ss_pred -HHHHHHHHHcCCccchh
Q psy8677 67 -MKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 67 -~~~Aei~ay~gkf~EAe 83 (99)
.-+|.++..-.+|.|||
T Consensus 534 ykvra~lail~kkfk~ae 551 (1636)
T KOG3616|consen 534 YKVRAMLAILEKKFKEAE 551 (1636)
T ss_pred HHHHHHHHHHHhhhhHHH
Confidence 36899999999999999
No 6
>KOG0292|consensus
Probab=97.47 E-value=0.00011 Score=65.80 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=53.1
Q ss_pred cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHH
Q psy8677 2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIK 57 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~ 57 (99)
-||-+.++.|+..|+....+.-|..||+.||..+|-+|||.||.+.+++++|.|+-
T Consensus 653 aLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLY 708 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLY 708 (1202)
T ss_pred ehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEE
Confidence 37889999999999999999999999999999999999999999999999998863
No 7
>KOG3617|consensus
Probab=97.40 E-value=0.00047 Score=62.05 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=79.3
Q ss_pred ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC-CHHHHHHHHHHHcCCccc
Q psy8677 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP-DDIMKHAYIAQHQGRFQT 81 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~-~~~~~~Aei~ay~gkf~E 81 (99)
+.-|+++.||+-++....+.-|..+|.++.....||+|..|.-..+..++..-+.+-+.-+ ..+.+-|-++.-.|-.+|
T Consensus 739 vtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEe 818 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEE 818 (1416)
T ss_pred EEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHH
Confidence 4568899999999999999999999999999999999999999999999999999887665 556788888888999999
Q ss_pred hh--hHhHHHH
Q psy8677 82 AV--YCDIIEY 90 (99)
Q Consensus 82 Ae--Y~~i~~~ 90 (99)
|+ |++.+|+
T Consensus 819 A~~lYr~ckR~ 829 (1416)
T KOG3617|consen 819 ALILYRQCKRY 829 (1416)
T ss_pred HHHHHHHHHHH
Confidence 99 9988775
No 8
>KOG0276|consensus
Probab=97.23 E-value=0.0011 Score=57.64 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=53.4
Q ss_pred ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHh
Q psy8677 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSL 59 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l 59 (99)
|.-+.++.|++++.....+.-|+.||..||.+.+|..|+.||.+-+|+.++-++...
T Consensus 648 l~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~ 704 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTS 704 (794)
T ss_pred hhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhh
Confidence 567889999999999999999999999999999999999999999999999887654
No 9
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=91.25 E-value=1.5 Score=37.21 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=58.1
Q ss_pred cccCHHHHHHHHHhC---CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCcc
Q psy8677 4 KNVGLNEAFQFVEAH---PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQ 80 (99)
Q Consensus 4 e~~~~~eA~~~~~~~---~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~ 80 (99)
..|.++||+++++.. |+...|..|....-..++++.|++++-++.+..- +-...-.....+++-.|+++
T Consensus 474 r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p--------~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP--------EKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred hcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC--------CCCcchHHHHHHHHhCCCHH
Confidence 468899999999875 4677899999999999999999998776533210 00112346778899999999
Q ss_pred chh--hHhHH
Q psy8677 81 TAV--YCDII 88 (99)
Q Consensus 81 EAe--Y~~i~ 88 (99)
||+ +..|.
T Consensus 546 ~A~~v~~~m~ 555 (697)
T PLN03081 546 EAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHH
Confidence 999 55544
No 10
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=91.23 E-value=1.5 Score=28.62 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=52.8
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+++++|.+..+ .+| ++..|..+|.......+++-|...|-++-+.. .+-+..-...|.++...|
T Consensus 28 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 28 YQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcC
Confidence 45677788876653 355 57889999999999999999998887664432 111223356899999999
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
++++|.
T Consensus 100 ~~~~A~ 105 (135)
T TIGR02552 100 EPESAL 105 (135)
T ss_pred CHHHHH
Confidence 999997
No 11
>PLN03077 Protein ECB2; Provisional
Probab=90.46 E-value=1.7 Score=37.71 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=56.3
Q ss_pred ccccCHHHHHHHHHh---CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhC-CCCHHHHHHHHHHHcCC
Q psy8677 3 LKNVGLNEAFQFVEA---HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRA-LPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 3 le~~~~~eA~~~~~~---~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~-l~~~~~~~Aei~ay~gk 78 (99)
-..|.++||+++++. .|++..|..|-...-...+.+.++.+.-++-+ ++- -...-...+-+++-.|+
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~---------l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE---------LDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---------hCCCCcchHHHHHHHHHHCCC
Confidence 356889999999987 46788999999988889999999988655532 221 12234677889999999
Q ss_pred ccchh
Q psy8677 79 FQTAV 83 (99)
Q Consensus 79 f~EAe 83 (99)
++||+
T Consensus 707 ~~~a~ 711 (857)
T PLN03077 707 WDEVA 711 (857)
T ss_pred hHHHH
Confidence 99999
No 12
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=88.93 E-value=3.7 Score=27.67 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=31.1
Q ss_pred cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..+.+++|...+. ..| ++..|..+|......++++-|...|.+.
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 91 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRA 91 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567777776654 333 3667788888888888888888877655
No 13
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=88.61 E-value=2.8 Score=23.26 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=50.5
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
...+.+++|+.+... .| ++..|..+|.......+++-|...|-++-+... ..+.--...|.++.-.|
T Consensus 11 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 11 YKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP--------DNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------cchhHHHHHHHHHHHHH
Confidence 356788888877654 33 346788889888888999988888776533211 11123356788888889
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
++++|.
T Consensus 83 ~~~~a~ 88 (100)
T cd00189 83 KYEEAL 88 (100)
T ss_pred hHHHHH
Confidence 988887
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=88.13 E-value=3.5 Score=28.32 Aligned_cols=72 Identities=15% Similarity=0.050 Sum_probs=44.6
Q ss_pred cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
..+.+++|..++. ..| +...|..+|......++++-|..+|-+.-...- +-+..-...|.++...|+
T Consensus 36 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--------~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 36 QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--------SHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHcCC
Confidence 4566666655543 233 466677777777777777777776665432210 011233578888888999
Q ss_pred ccchh
Q psy8677 79 FQTAV 83 (99)
Q Consensus 79 f~EAe 83 (99)
++||.
T Consensus 108 ~~eAi 112 (144)
T PRK15359 108 PGLAR 112 (144)
T ss_pred HHHHH
Confidence 99988
No 15
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=85.94 E-value=2.5 Score=24.51 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=38.0
Q ss_pred cccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677 2 YLKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQD 49 (99)
Q Consensus 2 ~le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d 49 (99)
+++.+.+++|+++.+ ..| ++..|-.||..-+..++++-|+..+-++-.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467889999998754 456 578888899999999999999988877643
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=85.75 E-value=4.8 Score=27.13 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCccchh
Q psy8677 67 MKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 67 ~~~Aei~ay~gkf~EAe 83 (99)
...|.++.-.|++++|.
T Consensus 173 ~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 173 LELAELYYLRGQYKDAR 189 (234)
T ss_pred HHHHHHHHHcCCHHHHH
Confidence 35677777778888877
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=85.67 E-value=3.1 Score=31.79 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=24.3
Q ss_pred cccCHHHHHHHHHh----CCCh------HHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVEA----HPHP------RLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~h~------~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..+.+++|....+. +|.+ ..|..+|...+...+++-|...|-++
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34566666555433 2211 13445666666677777777666654
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=85.09 E-value=3.6 Score=37.40 Aligned_cols=46 Identities=20% Similarity=0.055 Sum_probs=39.1
Q ss_pred ccccCHHHHHHHHHhCCC-hHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEAHPH-PRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
.+.+.+++|..+++.+|. +..+-.||...+...+++-|..+|-++-
T Consensus 584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al 630 (1157)
T PRK11447 584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVL 630 (1157)
T ss_pred HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456789999999998874 6788999999999999999999887664
No 19
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=83.07 E-value=2.8 Score=29.93 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=39.1
Q ss_pred HHHHHhCCC-hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHh
Q psy8677 12 FQFVEAHPH-PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSL 59 (99)
Q Consensus 12 ~~~~~~~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l 59 (99)
-.++..+|. +.-|..||+.||...+ .|+-.||+|.+=-++|+-+.+-
T Consensus 26 ~~vaa~~P~ss~aWA~LAe~al~~g~-~v~AYAyARTGYHRGLD~LRr~ 73 (129)
T PF11349_consen 26 AEVAAAHPASSLAWAALAEEALAAGR-PVTAYAYARTGYHRGLDQLRRN 73 (129)
T ss_pred HHHHHHCCCchHHHHHHHHHHHhCCC-chhhhhhhhccccccHHHHHHC
Confidence 467778886 6679999999999985 5666899999999999877764
No 20
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=82.50 E-value=8.3 Score=26.13 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=22.9
Q ss_pred HHHhCCCh----HHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677 14 FVEAHPHP----RLWKLLADKSLDLLSLNHAEQALVNCQD 49 (99)
Q Consensus 14 ~~~~~~h~----~lW~~LA~~AL~~~~l~iAe~AFvr~~d 49 (99)
++..+|.. .-+-.||...+..++++-|...|-.+-+
T Consensus 37 l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 37 LAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56666643 3344566777777777777777766543
No 21
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=82.49 E-value=9.7 Score=30.38 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=54.6
Q ss_pred ccCHHHHHHHH----HhCCC-hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH--HHHHHHHHHcC
Q psy8677 5 NVGLNEAFQFV----EAHPH-PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI--MKHAYIAQHQG 77 (99)
Q Consensus 5 ~~~~~eA~~~~----~~~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~--~~~Aei~ay~g 77 (99)
.+..++++.++ +.+|+ +.+.-++|..++...+++-|+..|-+.-. .-|+.. ...|.++.-.|
T Consensus 307 ~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-----------~~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 307 TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-----------QRPDAYDYAWLADALDRLH 375 (398)
T ss_pred CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------cCCCHHHHHHHHHHHHHcC
Confidence 35666666666 56775 55688999999999999999999865432 235433 58999999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
+.++|. |++-
T Consensus 376 ~~~~A~~~~~~~ 387 (398)
T PRK10747 376 KPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHH
Confidence 999999 7654
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=80.33 E-value=14 Score=30.31 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=32.2
Q ss_pred cccCHHHHHHHHHh-----CCChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVEA-----HPHPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~~-----~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..+.+++|+.+.+. ..++..|..||..-...++++-|...|-++
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777776653 235778888888888888888888877654
No 23
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=80.00 E-value=3.6 Score=25.24 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=46.4
Q ss_pred cccCHHHHHHHH----HhCC---ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFV----EAHP---HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQ 76 (99)
Q Consensus 4 e~~~~~eA~~~~----~~~~---h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~ 76 (99)
+++.+++|+.+. +..| ++..|-.||..-...++++-|-..+-+ .....-. ..-....|..+.-.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--------~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--------PDIHYLLARCLLKL 71 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--------HHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--------HHHHHHHHHHHHHh
Confidence 356778887654 4445 356788899999999999888777655 1111111 12234569999999
Q ss_pred CCccchh
Q psy8677 77 GRFQTAV 83 (99)
Q Consensus 77 gkf~EAe 83 (99)
|+++||-
T Consensus 72 ~~y~eAi 78 (84)
T PF12895_consen 72 GKYEEAI 78 (84)
T ss_dssp T-HHHHH
T ss_pred CCHHHHH
Confidence 9999997
No 24
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=79.75 E-value=6 Score=22.97 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC-Cccchh
Q psy8677 20 HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG-RFQTAV 83 (99)
Q Consensus 20 h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g-kf~EAe 83 (99)
.+..|..+|...+...+++-|...|-+.=+++.=+ +.--..+|.++..+| ++++|.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--------~~~~~~~g~~~~~~~~~~~~A~ 58 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--------AEAYYNLGLAYMKLGKDYEEAI 58 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH--------HHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHhCccHHHHH
Confidence 36789999999999999999999998764443111 112247899999999 699887
No 25
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.46 E-value=5.5 Score=19.95 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
+..|..+|......++++-|..+|-+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 457899999999999999999999765
No 26
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=78.10 E-value=3.3 Score=23.96 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=37.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC---HHHHHHHHHHHcCCccchh--hHhH
Q psy8677 26 LLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 26 ~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~---~~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
.+|...+..++++-|..+|-++-... |+ --...|.++.-+|++++|. |.+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-----------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-----------PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-----------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 36788889999999998887663332 32 1247899999999999999 5543
No 27
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=77.63 E-value=8.4 Score=26.09 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=25.8
Q ss_pred ccccCHHHHHHHHHhCCC----hHHHHHHHHHHHhccCHHHHHHHHH
Q psy8677 3 LKNVGLNEAFQFVEAHPH----PRLWKLLADKSLDLLSLNHAEQALV 45 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h----~~lW~~LA~~AL~~~~l~iAe~AFv 45 (99)
+..+++++|+......+. +.-|.++|...+..++.+-|..+|-
T Consensus 96 ~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455666666666654332 3455566666666666666666664
No 28
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=77.32 E-value=11 Score=29.89 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=52.1
Q ss_pred ccccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|+.+. ...| ++..|..+|...+..++++-|...|-++-+..- +.+.--.+.|.++...|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--------~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP--------SLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHHHHhC
Confidence 4567788887654 3444 478899999999999999999887766533221 11112357899999999
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
+|++|.
T Consensus 85 ~~~eA~ 90 (356)
T PLN03088 85 EYQTAK 90 (356)
T ss_pred CHHHHH
Confidence 999998
No 29
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=77.25 E-value=9.4 Score=31.22 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=57.8
Q ss_pred cccccCHHHHHHHHHh----C-CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc--h-----------------HHHH
Q psy8677 2 YLKNVGLNEAFQFVEA----H-PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG--L-----------------QLIK 57 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~----~-~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~--v-----------------~~I~ 57 (99)
.+.+|.+++|....+. . .++..|..||..-+..++++-|...|.++.+... . +.+.
T Consensus 32 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~ 111 (899)
T TIGR02917 32 YLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLD 111 (899)
T ss_pred HHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHH
Confidence 3567888888876654 3 4688899999999999999999999888654311 1 1122
Q ss_pred HhhCCC--C-H-----HHHHHHHHHHcCCccchh--hHhH
Q psy8677 58 SLRALP--D-D-----IMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 58 ~l~~l~--~-~-----~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
.+.+.. + + -...|.++.-.|++++|. |.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 151 (899)
T TIGR02917 112 ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQA 151 (899)
T ss_pred hhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222221 1 1 135777777888888888 5543
No 30
>KOG0985|consensus
Probab=76.80 E-value=5.5 Score=37.63 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=43.9
Q ss_pred ccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCcc
Q psy8677 5 NVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYA 51 (99)
Q Consensus 5 ~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~ 51 (99)
-++++.|+.|++.-..|..|..||.+-|+.+-..-|-..|++-.|-.
T Consensus 1088 i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps 1134 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPS 1134 (1666)
T ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcH
Confidence 36899999999999999999999999999999999999999998854
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=75.44 E-value=4.8 Score=29.93 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=6.4
Q ss_pred HHHHHHHHHcCCccchh--hHhHHHHHhh
Q psy8677 67 MKHAYIAQHQGRFQTAV--YCDIIEYLRR 93 (99)
Q Consensus 67 ~~~Aei~ay~gkf~EAe--Y~~i~~~~~~ 93 (99)
...|+++.-.|++++|. +++.-+.+||
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~~l~~ 280 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALRLLRR 280 (280)
T ss_dssp HHHHHHHT---------------------
T ss_pred cccccccccccccccccccccccccccCC
Confidence 46788889999999998 6666555553
No 32
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=74.86 E-value=5.2 Score=26.78 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=19.2
Q ss_pred cCHHHHHHHHHhCCChHHHHHHHHHHHh
Q psy8677 6 VGLNEAFQFVEAHPHPRLWKLLADKSLD 33 (99)
Q Consensus 6 ~~~~eA~~~~~~~~h~~lW~~LA~~AL~ 33 (99)
+..+.|++||.....+.+|-.++...++
T Consensus 110 ~d~~~a~~~~~~~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 110 GNYEKAIEYFVKQNNPELWAEVLKALLD 137 (140)
T ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 5667777777776677777777766554
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=74.79 E-value=25 Score=26.82 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=35.4
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQD 49 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d 49 (99)
++.+.+++|..+... .| +...|..||......++++-|...|.++.+
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456788888877654 33 355788888888889999988888887654
No 34
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=74.71 E-value=12 Score=21.86 Aligned_cols=47 Identities=28% Similarity=0.419 Sum_probs=38.0
Q ss_pred cccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 2 YLKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 2 ~le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
.+.++.|++|..++. .+| ++..|...|..-...+++.-|...|-++-
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 356788899887765 345 58899999999999999999998887653
No 35
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=73.93 E-value=7.7 Score=21.31 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
|..|..||..-...++++-|++.|-++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567999999999999999999999775
No 36
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=72.58 E-value=7.3 Score=22.45 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=36.2
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
++.+.+++|.+..+ ..| ++.-|..||...+..++++-|...|-++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56788888887654 455 5889999999999999999999888765
No 37
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.09 E-value=5.8 Score=25.50 Aligned_cols=69 Identities=22% Similarity=0.205 Sum_probs=50.0
Q ss_pred HHHHhccCHHHHHHHHHHcCCccchHHHHHh-hCCCCHHHHHHHHHHHcCCccchh--hHhHHHHHhhhccC
Q psy8677 29 DKSLDLLSLNHAEQALVNCQDYAGLQLIKSL-RALPDDIMKHAYIAQHQGRFQTAV--YCDIIEYLRRRKDS 97 (99)
Q Consensus 29 ~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l-~~l~~~~~~~Aei~ay~gkf~EAe--Y~~i~~~~~~~~~~ 97 (99)
..++..+|+..|.....+.=|+..-+-.... ....-..+..|.+...+|++++|- +.+.-...|...|.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 3578888999998888887777655543331 011223467999999999999999 88887777777764
No 38
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=71.18 E-value=22 Score=29.76 Aligned_cols=44 Identities=9% Similarity=0.013 Sum_probs=30.9
Q ss_pred cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
+.+.+++|....+ .+| ++..|..+|......++++-|..+|-+.
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777776543 334 4777888888888888888888777665
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=71.04 E-value=19 Score=32.95 Aligned_cols=45 Identities=7% Similarity=-0.112 Sum_probs=31.6
Q ss_pred cccCHHHHHHHHH----hCCChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 4 KNVGLNEAFQFVE----AHPHPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 4 e~~~~~eA~~~~~----~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
..+.+++|....+ ..|++..|..+|..++..++++-|..+|-+.-
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5677777776654 33456667788888888888888888775543
No 40
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.18 E-value=0.65 Score=31.22 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=30.3
Q ss_pred ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCH
Q psy8677 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSL 37 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l 37 (99)
.+.+.+++|+++|...+.+.+|..|+...++..++
T Consensus 107 ~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 107 HKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred HHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 35578899999999999999999999998887654
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=69.01 E-value=32 Score=27.43 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=47.3
Q ss_pred cccCHHHHHHHHHhCCC----hHHHHHH-HHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 4 KNVGLNEAFQFVEAHPH----PRLWKLL-ADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 4 e~~~~~eA~~~~~~~~h----~~lW~~L-A~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
-.|.|+.|.+....++. |.+--.+ |..|...++++.|...|.+..+...=..+ ...+..|+++..+|+
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~-------~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQL-------PVEITRVRIQLARNE 168 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH-------HHHHHHHHHHHHCCC
Confidence 35889999988887665 5666666 55559999999998877664321110000 012345788888888
Q ss_pred ccchh
Q psy8677 79 FQTAV 83 (99)
Q Consensus 79 f~EAe 83 (99)
+++|.
T Consensus 169 ~~~Al 173 (398)
T PRK10747 169 NHAAR 173 (398)
T ss_pred HHHHH
Confidence 88777
No 42
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=68.51 E-value=22 Score=21.94 Aligned_cols=76 Identities=22% Similarity=0.249 Sum_probs=51.1
Q ss_pred cccccCHHHHHHHHHhC----CC----hHHHHHHHHHHHhccCHHHHHHHHHHcCC-ccchHHHHHhhCCCCHHHHHHHH
Q psy8677 2 YLKNVGLNEAFQFVEAH----PH----PRLWKLLADKSLDLLSLNHAEQALVNCQD-YAGLQLIKSLRALPDDIMKHAYI 72 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~----~h----~~lW~~LA~~AL~~~~l~iAe~AFvr~~d-~~~v~~I~~l~~l~~~~~~~Aei 72 (99)
+++.+.+++|...+... |. +..+-.+|...+...+++-|...|-.+-. ++.-.+ .+.--...|.+
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~~~~~ 85 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK------APDALLKLGMS 85 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc------ccHHHHHHHHH
Confidence 35678888888766433 32 24677799999999999999988876532 111000 01123567888
Q ss_pred HHHcCCccchh
Q psy8677 73 AQHQGRFQTAV 83 (99)
Q Consensus 73 ~ay~gkf~EAe 83 (99)
+.-.|++++|.
T Consensus 86 ~~~~~~~~~A~ 96 (119)
T TIGR02795 86 LQELGDKEKAK 96 (119)
T ss_pred HHHhCChHHHH
Confidence 88899999998
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=68.20 E-value=1.7 Score=32.40 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=0.0
Q ss_pred cccccCHHHHHHHHHhC-------CChHHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677 2 YLKNVGLNEAFQFVEAH-------PHPRLWKLLADKSLDLLSLNHAEQALVNCQD 49 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~-------~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d 49 (99)
.+..+.+++|+++...+ ..+..|+.+|..|-...+++.|..||-++-.
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~ 72 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA 72 (280)
T ss_dssp -------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45678999999998432 2467899999999999999999999988743
No 44
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=68.09 E-value=18 Score=28.54 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=51.5
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+++.+|+..++. .| ..+.|..||..-.+.++++-|+.+|....++.. +-|..---.|..+...|
T Consensus 111 ~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--------~~p~~~nNlgms~~L~g 182 (257)
T COG5010 111 IRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP--------NEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--------CCchhhhhHHHHHHHcC
Confidence 456788888887765 33 367888899999999999999999976544332 11223335677777777
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
+++.|+
T Consensus 183 d~~~A~ 188 (257)
T COG5010 183 DLEDAE 188 (257)
T ss_pred CHHHHH
Confidence 777777
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=68.03 E-value=33 Score=26.18 Aligned_cols=71 Identities=11% Similarity=0.009 Sum_probs=47.0
Q ss_pred ccCHHHHHH----HHHhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCc
Q psy8677 5 NVGLNEAFQ----FVEAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRF 79 (99)
Q Consensus 5 ~~~~~eA~~----~~~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf 79 (99)
.+.+++|.. .+..+| ++..|..+|......++++-|..+|-+.-...- +-..--..+|.++.+.|++
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--------~~~~a~~~lg~~l~~~g~~ 148 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP--------TYNYAYLNRGIALYYGGRY 148 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCH
Confidence 355666653 334455 478899999999999999999988876522110 0011224677777778888
Q ss_pred cchh
Q psy8677 80 QTAV 83 (99)
Q Consensus 80 ~EAe 83 (99)
++|.
T Consensus 149 ~eA~ 152 (296)
T PRK11189 149 ELAQ 152 (296)
T ss_pred HHHH
Confidence 8886
No 46
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=67.76 E-value=14 Score=18.60 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
+..|-.+|..-+...+++-|..+|-+.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 357999999999999999999999875
No 47
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=67.66 E-value=39 Score=29.01 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=6.2
Q ss_pred HHHHHHHcCCccc
Q psy8677 69 HAYIAQHQGRFQT 81 (99)
Q Consensus 69 ~Aei~ay~gkf~E 81 (99)
.|.++...|+++|
T Consensus 252 Lg~~l~~~G~~~e 264 (656)
T PRK15174 252 LGLAYYQSGRSRE 264 (656)
T ss_pred HHHHHHHcCCchh
Confidence 3444444555544
No 48
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=66.52 E-value=39 Score=23.08 Aligned_cols=59 Identities=12% Similarity=-0.129 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh--hHhH
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
|..|..+|......++++-|...|-++-+.+-- -..--...|.++.-.|++++|. |.+.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPW--------SWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444888999999999999998887764222110 0112257899999999999998 6543
No 49
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=65.37 E-value=24 Score=29.89 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC--HHHHHHHHHHHcCCccchh
Q psy8677 19 PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD--DIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 19 ~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~--~~~~~Aei~ay~gkf~EAe 83 (99)
+.+..+..+|..++..++++-|..+|-+.-+.. ++ .-...|.++.++|+++||.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-----------ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-----------MSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHcCCHHHHH
Confidence 356889999999999999999999988755444 22 2357899999999999999
No 50
>KOG1538|consensus
Probab=65.08 E-value=6.5 Score=35.62 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=43.3
Q ss_pred cccccCHHHHHHHHHhCCC--hHHHHHHHHHHHhccCHHHHHHHHHHcCCcc-chHHHHHh
Q psy8677 2 YLKNVGLNEAFQFVEAHPH--PRLWKLLADKSLDLLSLNHAEQALVNCQDYA-GLQLIKSL 59 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h--~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~-~v~~I~~l 59 (99)
-+|.+.|.||+++++.+|. |.-.---|..--+.-.|+-|.+||.+.|.-+ -+++++.|
T Consensus 783 Hve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred eeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3688999999999999985 4444455666667788999999999997654 34444444
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=64.06 E-value=43 Score=27.96 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=49.3
Q ss_pred cccCHHHHHHHH----HhCCC-hHHHHHHHHHHHhccCHHHHHHHHHHcCCccc----------------------hHHH
Q psy8677 4 KNVGLNEAFQFV----EAHPH-PRLWKLLADKSLDLLSLNHAEQALVNCQDYAG----------------------LQLI 56 (99)
Q Consensus 4 e~~~~~eA~~~~----~~~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~----------------------v~~I 56 (99)
..+.+++|.... +.+|+ +..|..||...+..++++-|...|-+.-..+- +...
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 456677776654 44554 56688888888888887777776666422111 1111
Q ss_pred HHhh-CC-CC-HH--HHHHHHHHHcCCccchh--hHhH
Q psy8677 57 KSLR-AL-PD-DI--MKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 57 ~~l~-~l-~~-~~--~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
+++. .. |+ +. ...|.++...|+++||. |.++
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 1111 11 21 22 35688888899999998 5443
No 52
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=63.94 E-value=15 Score=28.55 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=39.3
Q ss_pred ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCc
Q psy8677 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDY 50 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~ 50 (99)
+..+.+++|++++..+.+...=.+.....|...+++.|++-|-..++.
T Consensus 113 ~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp CCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456889999999999888777788888899999999999888776543
No 53
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=61.54 E-value=48 Score=28.50 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=23.1
Q ss_pred ccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 5 NVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 5 ~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
.+.+++|...... .| ++.-|..||......++++-|..+|.+.
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555544332 23 3455666666666666666666555544
No 54
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=60.55 E-value=46 Score=29.06 Aligned_cols=74 Identities=16% Similarity=0.024 Sum_probs=53.7
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC-H--HHHHHHHHH
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD-D--IMKHAYIAQ 74 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~-~--~~~~Aei~a 74 (99)
+..+.+++|....+. .| ++.+|-.+|......++.+-|+..+-++-... |+ . ....|.++.
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-----------Pd~~~l~~~~a~~al 438 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-----------PRNINLEVEQAWTAL 438 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----------CCChHHHHHHHHHHH
Confidence 456778888887765 44 58899999999999999998887765543221 22 1 246788888
Q ss_pred HcCCccchh--hHhH
Q psy8677 75 HQGRFQTAV--YCDI 87 (99)
Q Consensus 75 y~gkf~EAe--Y~~i 87 (99)
-.|+|++|+ +.++
T Consensus 439 ~~~~~~~A~~~~~~l 453 (765)
T PRK10049 439 DLQEWRQMDVLTDDV 453 (765)
T ss_pred HhCCHHHHHHHHHHH
Confidence 889999999 5444
No 55
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=60.27 E-value=50 Score=30.20 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=35.0
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
.+.+.+++|+...+ ..| ++..|..||..-...++++-|+..|-++-
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 45678888877665 233 47888889998888899999988887654
No 56
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=60.00 E-value=59 Score=27.23 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=30.3
Q ss_pred cccCHHHHHHHHHh----CCC-hHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVEA----HPH-PRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..+.+++|+..... .|. +..|-.+|..-+..++++-|...|-+.
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45677777766553 343 557778888777888888887777654
No 57
>KOG2247|consensus
Probab=59.62 E-value=3.4 Score=35.84 Aligned_cols=63 Identities=11% Similarity=-0.093 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
.+-|+|.+..|+.-.+-.+|.++|-+++|-..+-=|..+....+..+.-|-+..---.||.|+
T Consensus 3 ~~~~~~~~~~a~~d~~~~~airiyr~ledaalv~pi~~~w~~e~~nlavaca~tiv~~YD~ag 65 (615)
T KOG2247|consen 3 LKVIPCTLTKAQEDFKCVSAIRIYRRLEDAALVGPIIHRWRPEGHNLAVACANTIVIYYDKAG 65 (615)
T ss_pred ccchhhHHHhhhhhccchHHHHHHHHhhhhhccccceeeEecCCCceehhhhhhHHHhhhhhc
Confidence 357999999999999999999999999999999888888877777777777777777888887
No 58
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.54 E-value=16 Score=16.20 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 22 RLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..|-.+|.......+++-|..+|.++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45788899999999999999988765
No 59
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=59.26 E-value=4.3 Score=29.00 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=18.6
Q ss_pred cccccCHHHHHHHHHhCCChHH
Q psy8677 2 YLKNVGLNEAFQFVEAHPHPRL 23 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h~~l 23 (99)
+|+++.|++|+++|+..|..++
T Consensus 113 yl~~~~fd~Al~~~~~~~~~~d 134 (147)
T PF05131_consen 113 YLDKGDFDEALQYCKTNPAQRD 134 (147)
T ss_pred HHhcCcHHHHHHHccCCHHHHH
Confidence 5899999999999999766554
No 60
>KOG1840|consensus
Probab=58.32 E-value=66 Score=27.55 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=53.4
Q ss_pred cccCHHHHHHHHHh----------CCChHHHHHHHHHHHhcc---CHHHHHHHHHHcCCccchHHHHHhhC-----CCCH
Q psy8677 4 KNVGLNEAFQFVEA----------HPHPRLWKLLADKSLDLL---SLNHAEQALVNCQDYAGLQLIKSLRA-----LPDD 65 (99)
Q Consensus 4 e~~~~~eA~~~~~~----------~~h~~lW~~LA~~AL~~~---~l~iAe~AFvr~~d~~~v~~I~~l~~-----l~~~ 65 (99)
..++++||..+|+. ..|+..=..|...++.-. +++-|.+=|.+ .+..+...-. +.+-
T Consensus 295 ~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~-----al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK-----ALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH-----HHHHHHhhccccchHHHHH
Confidence 34677777666654 456666666666665443 45555544441 2222221111 1122
Q ss_pred HHHHHHHHHHcCCccchh--hHhHHHHHhhhcc
Q psy8677 66 IMKHAYIAQHQGRFQTAV--YCDIIEYLRRRKD 96 (99)
Q Consensus 66 ~~~~Aei~ay~gkf~EAe--Y~~i~~~~~~~~~ 96 (99)
....|+++-.+|||+||+ |+++--..|++.+
T Consensus 370 ~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 358999999999999999 9888877776654
No 61
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=55.74 E-value=66 Score=22.21 Aligned_cols=68 Identities=12% Similarity=0.014 Sum_probs=43.4
Q ss_pred cccCHHHHHHHHHhC----CC----hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHH
Q psy8677 4 KNVGLNEAFQFVEAH----PH----PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQH 75 (99)
Q Consensus 4 e~~~~~eA~~~~~~~----~h----~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay 75 (99)
..+.+++|+.+.+.. |. ...|..||......++++-|..+|.+.-++.. +....-...|.++..
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--------KQPSALNNIAVIYHK 118 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHH
Confidence 457788888876533 22 35788999999999999999988876433211 111122345666666
Q ss_pred cCCc
Q psy8677 76 QGRF 79 (99)
Q Consensus 76 ~gkf 79 (99)
.|++
T Consensus 119 ~g~~ 122 (172)
T PRK02603 119 RGEK 122 (172)
T ss_pred cCCh
Confidence 6664
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=55.55 E-value=48 Score=24.93 Aligned_cols=77 Identities=10% Similarity=-0.023 Sum_probs=47.2
Q ss_pred ccccCHHHHHHHHHh----CCC-hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCH----HHHHHHHH
Q psy8677 3 LKNVGLNEAFQFVEA----HPH-PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDD----IMKHAYIA 73 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~----~~~~Aei~ 73 (99)
++.|.+++|.+.++. +|+ +..+..||..-.+.++++-|...|.+.-+...- -+.. -...|.++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--------~~~~~~~~~~~la~~~ 196 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--------SSMLRGHNWWHLALFY 196 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--------CcchhHHHHHHHHHHH
Confidence 345666777655543 333 456667777777777777777776654332210 0111 12578899
Q ss_pred HHcCCccchh--hHhH
Q psy8677 74 QHQGRFQTAV--YCDI 87 (99)
Q Consensus 74 ay~gkf~EAe--Y~~i 87 (99)
..+|++++|. |.+.
T Consensus 197 ~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 197 LERGDYEAALAIYDTH 212 (355)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 9999999998 6554
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=55.37 E-value=38 Score=27.00 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=33.4
Q ss_pred cccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 4 KNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 4 e~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
+.+.+++|.... +.+| |+..+..++...+..++++-|...+-++... ..+++++...++..++.|.
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~---------~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA---------GLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHHH
Confidence 344455444332 2334 3445555555555555555555443333222 1223344445566666665
Q ss_pred ccch
Q psy8677 79 FQTA 82 (99)
Q Consensus 79 f~EA 82 (99)
++++
T Consensus 236 l~~~ 239 (409)
T TIGR00540 236 LDEA 239 (409)
T ss_pred HHHH
Confidence 5444
No 64
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=54.89 E-value=24 Score=21.43 Aligned_cols=44 Identities=25% Similarity=0.300 Sum_probs=32.3
Q ss_pred ccccCHHHHHHHHHh----CCChHHHHHHHHHHHhccCHHHHHHHHHH
Q psy8677 3 LKNVGLNEAFQFVEA----HPHPRLWKLLADKSLDLLSLNHAEQALVN 46 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~h~~lW~~LA~~AL~~~~l~iAe~AFvr 46 (99)
...+.+++|+.+... ..++..+-++|...+.-++++-|.++|-+
T Consensus 36 ~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 36 FQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 356889999999844 22446666778888888999998888754
No 65
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=54.65 E-value=74 Score=27.77 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=35.0
Q ss_pred cccCHHHHHHHHHh-----CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 4 KNVGLNEAFQFVEA-----HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 4 e~~~~~eA~~~~~~-----~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
..+.+++|..+.+. -.++..|..||...+...+++-|..++-++-... -+-.. -...|.++.-.|+
T Consensus 61 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--------P~~~~-~~~la~~l~~~g~ 131 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--------PDKAN-LLALAYVYKRAGR 131 (765)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHH-HHHHHHHHHHCCC
Confidence 34555566555544 2235556666666666666666655554331100 00001 2335556666666
Q ss_pred ccchh
Q psy8677 79 FQTAV 83 (99)
Q Consensus 79 f~EAe 83 (99)
+++|.
T Consensus 132 ~~~Al 136 (765)
T PRK10049 132 HWDEL 136 (765)
T ss_pred HHHHH
Confidence 66665
No 66
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=54.59 E-value=67 Score=21.97 Aligned_cols=79 Identities=11% Similarity=-0.078 Sum_probs=46.0
Q ss_pred cccCHHHHHHHHHhC----CC----hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHH
Q psy8677 4 KNVGLNEAFQFVEAH----PH----PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQH 75 (99)
Q Consensus 4 e~~~~~eA~~~~~~~----~h----~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay 75 (99)
..+.+++|....... ++ +..|..||......++++-|..+|-+.-....-.. ...-.+-.--...++++.-
T Consensus 47 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-~~~~~la~i~~~~~~~~~~ 125 (168)
T CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-QALNNMAVICHYRGEQAIE 125 (168)
T ss_pred HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHhhHHHHH
Confidence 457777877754433 22 24799999999999999999998877543211100 0000000011234444447
Q ss_pred cCCccchh
Q psy8677 76 QGRFQTAV 83 (99)
Q Consensus 76 ~gkf~EAe 83 (99)
.|++++|.
T Consensus 126 ~g~~~~A~ 133 (168)
T CHL00033 126 QGDSEIAE 133 (168)
T ss_pred cccHHHHH
Confidence 78888776
No 67
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=53.99 E-value=34 Score=28.53 Aligned_cols=63 Identities=25% Similarity=0.182 Sum_probs=41.2
Q ss_pred ccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH--HHHHHHHHHcCCccch
Q psy8677 5 NVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI--MKHAYIAQHQGRFQTA 82 (99)
Q Consensus 5 ~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~--~~~Aei~ay~gkf~EA 82 (99)
+|..+.|++++.+ |. .==+.||+-++|++|... .+++++++ .+.|+++.-+|+++-|
T Consensus 308 ~G~~e~AL~~~~D---~~---~rFeLAl~lg~L~~A~~~---------------a~~~~~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 308 KGYPELALQFVTD---PD---HRFELALQLGNLDIALEI---------------AKELDDPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp TT-HHHHHHHSS----HH---HHHHHHHHCT-HHHHHHH---------------CCCCSTHHHHHHHHHHHHHTTBHHHH
T ss_pred CCCHHHHHhhcCC---hH---HHhHHHHhcCCHHHHHHH---------------HHhcCcHHHHHHHHHHHHHcCCHHHH
Confidence 4556667777776 32 333568888888887643 33444444 4899999999999999
Q ss_pred h--hHhHH
Q psy8677 83 V--YCDII 88 (99)
Q Consensus 83 e--Y~~i~ 88 (99)
| |.+.+
T Consensus 367 e~c~~k~~ 374 (443)
T PF04053_consen 367 EECYQKAK 374 (443)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhhc
Confidence 9 66543
No 68
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=53.16 E-value=57 Score=25.93 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=46.8
Q ss_pred ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccch
Q psy8677 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTA 82 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EA 82 (99)
.+.+.|++-.+|+.....|.-|.-+....+..++-.-|. .||.+ +++ ..+.+.+.-.|.+.+|
T Consensus 219 a~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~------------~yI~k---~~~--~~rv~~y~~~~~~~~A 281 (319)
T PF04840_consen 219 AENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEAS------------KYIPK---IPD--EERVEMYLKCGDYKEA 281 (319)
T ss_pred HhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHH------------HHHHh---CCh--HHHHHHHHHCCCHHHH
Confidence 466788888888887777888888888888777766554 23333 444 5578888889999988
Q ss_pred h
Q psy8677 83 V 83 (99)
Q Consensus 83 e 83 (99)
.
T Consensus 282 ~ 282 (319)
T PF04840_consen 282 A 282 (319)
T ss_pred H
Confidence 7
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=52.87 E-value=91 Score=26.04 Aligned_cols=41 Identities=10% Similarity=-0.044 Sum_probs=31.1
Q ss_pred CHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 7 GLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 7 ~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
.+++|...++ ..| ++.-|..+|...+..++++-|..+|-+.
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 364 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQA 364 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3566666543 445 5788999999999999999999888653
No 70
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=47.31 E-value=38 Score=17.85 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.5
Q ss_pred HHhCC-ChHHHHHHHHHHHhccCHHHHH
Q psy8677 15 VEAHP-HPRLWKLLADKSLDLLSLNHAE 41 (99)
Q Consensus 15 ~~~~~-h~~lW~~LA~~AL~~~~l~iAe 41 (99)
++.+| ++.-|..||..=...++++.|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45667 5889999999999999998876
No 71
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=47.05 E-value=30 Score=17.23 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHcCCcc
Q psy8677 22 RLWKLLADKSLDLLSLNHAEQALVNCQDYA 51 (99)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~ 51 (99)
..|-.+|..-...++++-|.+.|-++-++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 368889999999999999999998875543
No 72
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=46.00 E-value=55 Score=23.75 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=47.5
Q ss_pred HHhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc-------------------------hHHHHHhhCCC-C---
Q psy8677 15 VEAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG-------------------------LQLIKSLRALP-D--- 64 (99)
Q Consensus 15 ~~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~-------------------------v~~I~~l~~l~-~--- 64 (99)
+..+| +...|..||...+...+++.|..+|-+.-.+.. ++.+++.-.+. +
T Consensus 66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~ 145 (198)
T PRK10370 66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT 145 (198)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence 33454 688999999999999999999998877643222 11111111111 1
Q ss_pred HHHHHHHHHHHcCCccchh--hHhH
Q psy8677 65 DIMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 65 ~~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
--...|-++.-.|+|++|. |.++
T Consensus 146 al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 146 ALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1136778888889999988 5554
No 73
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=45.91 E-value=26 Score=17.90 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCccchh--hHhH
Q psy8677 68 KHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 68 ~~Aei~ay~gkf~EAe--Y~~i 87 (99)
..|.++..+|+++||. |.+.
T Consensus 7 ~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 7 NLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhhhhcchhhHHHHHH
Confidence 4688899999999999 4444
No 74
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=44.84 E-value=1.6e+02 Score=23.45 Aligned_cols=73 Identities=14% Similarity=0.050 Sum_probs=48.9
Q ss_pred cCHHHHHHHH----HhCCC-h--HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH--HHHHHHHHHc
Q psy8677 6 VGLNEAFQFV----EAHPH-P--RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI--MKHAYIAQHQ 76 (99)
Q Consensus 6 ~~~~eA~~~~----~~~~h-~--~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~--~~~Aei~ay~ 76 (99)
+..+.+...+ +..|. | ..-.+||..++..++++-|++.|-+.. .++.-|+++ .-.|+++.-.
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~---------a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA---------ACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH---------HhhcCCCHHHHHHHHHHHHHc
Confidence 3344444444 44554 4 567789999999999999998776321 222233332 3579999999
Q ss_pred CCccchh--hHhH
Q psy8677 77 GRFQTAV--YCDI 87 (99)
Q Consensus 77 gkf~EAe--Y~~i 87 (99)
|+.++|. |++-
T Consensus 384 g~~~~A~~~~~~~ 396 (409)
T TIGR00540 384 GDKAEAAAMRQDS 396 (409)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999 7654
No 75
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=44.47 E-value=18 Score=17.92 Aligned_cols=17 Identities=24% Similarity=0.065 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCccchh
Q psy8677 67 MKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 67 ~~~Aei~ay~gkf~EAe 83 (99)
...|.++.-+|+++||+
T Consensus 5 ~~la~~~~~~G~~~eA~ 21 (26)
T PF07721_consen 5 LALARALLAQGDPDEAE 21 (26)
T ss_pred HHHHHHHHHcCCHHHHH
Confidence 45789999999999997
No 76
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=44.39 E-value=91 Score=27.56 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHhCCC-hHHHHHHHHHHHhccCHHHHHHHHHHcCCcc---------chHHHHHhhCCC------------
Q psy8677 6 VGLNEAFQFVEAHPH-PRLWKLLADKSLDLLSLNHAEQALVNCQDYA---------GLQLIKSLRALP------------ 63 (99)
Q Consensus 6 ~~~~eA~~~~~~~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~---------~v~~I~~l~~l~------------ 63 (99)
-.+-++..+++.-|| +.--.+||......+.++-|+.-+-++-.+. ....+.+.+.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 346788999999998 7888999999999999999999888875432 222223332221
Q ss_pred ---C--HHHHHHHHHHHcCCccchh--hHhHH
Q psy8677 64 ---D--DIMKHAYIAQHQGRFQTAV--YCDII 88 (99)
Q Consensus 64 ---~--~~~~~Aei~ay~gkf~EAe--Y~~i~ 88 (99)
+ ....+|..+.-.|+++||. |.+.-
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1 2357899999999999999 87653
No 77
>KOG2076|consensus
Probab=44.37 E-value=87 Score=28.91 Aligned_cols=68 Identities=26% Similarity=0.406 Sum_probs=44.0
Q ss_pred cCHHHHHHH----HHhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCC--ccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 6 VGLNEAFQF----VEAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQD--YAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 6 ~~~~eA~~~----~~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d--~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
|..+.++.+ +-.+| ++.+|..+|..+.+..+.+.|..||.|.=. -...+++ ..++.++--.|.
T Consensus 187 Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~----------~ers~L~~~~G~ 256 (895)
T KOG2076|consen 187 GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELI----------YERSSLYQKTGD 256 (895)
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHH----------HHHHHHHHHhCh
Confidence 455555554 33444 468999999999999999999999988622 1122222 245555555566
Q ss_pred ccchh
Q psy8677 79 FQTAV 83 (99)
Q Consensus 79 f~EAe 83 (99)
...|.
T Consensus 257 ~~~Am 261 (895)
T KOG2076|consen 257 LKRAM 261 (895)
T ss_pred HHHHH
Confidence 66555
No 78
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=42.05 E-value=40 Score=19.88 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH-----HHHHHHHHHcCCccchh--hHhH
Q psy8677 22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI-----MKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~-----~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
..+..||..-...++++-|...|-++-++ .+.+.+ +.+. ...|.++...|++++|. |.+.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-----EEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----HHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567788888889999999888776332 111211 1111 36899999999999999 5443
No 79
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=39.95 E-value=46 Score=26.58 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=30.9
Q ss_pred HHHhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCc
Q psy8677 14 FVEAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDY 50 (99)
Q Consensus 14 ~~~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~ 50 (99)
....+| +..-|-.||..-|...+++.|..||.+-...
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL 185 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL 185 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 344555 5889999999999999999999999886544
No 80
>KOG2376|consensus
Probab=39.20 E-value=66 Score=28.56 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=44.5
Q ss_pred cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhC---CCC-HHHHHHHHHHHcC
Q psy8677 2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRA---LPD-DIMKHAYIAQHQG 77 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~---l~~-~~~~~Aei~ay~g 77 (99)
+|...+|++|+.+++.++-.. ..+.--=|+||..-+-=.-=++++-++. +++ --..+|.++=-.|
T Consensus 56 lIq~~ky~~ALk~ikk~~~~~-----------~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~ 124 (652)
T KOG2376|consen 56 LIQLDKYEDALKLIKKNGALL-----------VINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLE 124 (652)
T ss_pred hhhhhHHHHHHHHHHhcchhh-----------hcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHh
Confidence 467788999998888865211 1111113555543322222234444443 332 2247999999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
+|+||= |+.+
T Consensus 125 ~ydealdiY~~L 136 (652)
T KOG2376|consen 125 RYDEALDIYQHL 136 (652)
T ss_pred hHHHHHHHHHHH
Confidence 999998 8876
No 81
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=39.05 E-value=93 Score=23.25 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
...|-.+|..|-..+++++|..++.++..+....=. ..|.-.+..|.+..-.|+..+|=
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~----~~~~v~~e~akllw~~g~~~~Ai 204 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES----LLPRVFLEYAKLLWAQGEQEEAI 204 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC----CCcchHHHHHHHHHHcCCHHHHH
Confidence 578999999999999999999999998875411000 03333445666666666655553
No 82
>KOG1155|consensus
Probab=37.67 E-value=1.1e+02 Score=26.79 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHH---cCCccch
Q psy8677 19 PHPRLWKLLADKSLDLLSLNHAEQALVN---CQDYAGL 53 (99)
Q Consensus 19 ~h~~lW~~LA~~AL~~~~l~iAe~AFvr---~~d~~~v 53 (99)
..+++|..||+-=..-.+++-|.+||-| ++|..+.
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 3589999999999888899999999976 4776443
No 83
>KOG2796|consensus
Probab=37.16 E-value=1.6e+02 Score=24.16 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=46.9
Q ss_pred HHHhCC--ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCH-HHHHHHHHHHcCCccchh-hHhHHH
Q psy8677 14 FVEAHP--HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDD-IMKHAYIAQHQGRFQTAV-YCDIIE 89 (99)
Q Consensus 14 ~~~~~~--h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~-~~~~Aei~ay~gkf~EAe-Y~~i~~ 89 (99)
+++..| .|.|-+-|+..+|+.+|...|++-|-++.. --++|-+++.. -+-++.-..|.|.-+-|+ |+.-|.
T Consensus 203 vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek-----~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 203 VIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK-----VTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH-----HHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 444443 589999999999999999999999987651 11223333332 234555555666655565 555444
Q ss_pred HHh
Q psy8677 90 YLR 92 (99)
Q Consensus 90 ~~~ 92 (99)
+++
T Consensus 278 i~~ 280 (366)
T KOG2796|consen 278 ILR 280 (366)
T ss_pred ccc
Confidence 443
No 84
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=36.43 E-value=87 Score=24.83 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=36.4
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
+..+.+++|+..+.. .| ++..|-.+|...+..++++-|..+|-++-
T Consensus 47 ~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 47 IKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456778888876554 34 57789999999999999999999997763
No 85
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=35.10 E-value=2.2e+02 Score=23.98 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=47.0
Q ss_pred hCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC--HHHHHHHHHHHcCCccchh--hHhHH
Q psy8677 17 AHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD--DIMKHAYIAQHQGRFQTAV--YCDII 88 (99)
Q Consensus 17 ~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~--~~~~~Aei~ay~gkf~EAe--Y~~i~ 88 (99)
.+..|.+|..||..++..+.+.-|+.+|-+ .++.-++ .-.-.|.++.-+|...+|+ +.+-=
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~lea-----------Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEA-----------ALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHH-----------HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 344689999999999999999999988863 3334443 2346899999999999999 55443
No 86
>KOG3616|consensus
Probab=34.75 E-value=1.1e+02 Score=28.88 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=54.2
Q ss_pred ccccCHHHHHHHHHhCC----ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc-----------hHHHHHhhCCCC---
Q psy8677 3 LKNVGLNEAFQFVEAHP----HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG-----------LQLIKSLRALPD--- 64 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~----h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~-----------v~~I~~l~~l~~--- 64 (99)
|....|..|+.++...+ ...-+-.+|.+=-..++|++||.-|+.-+-+.- ++--+--++--.
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~ 822 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEA 822 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchh
Confidence 45678999998877433 344566788888889999999999998754321 111111111111
Q ss_pred ---HHHHHHHHHHHcCCccchh
Q psy8677 65 ---DIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 65 ---~~~~~Aei~ay~gkf~EAe 83 (99)
--+-+||=+--+|+|.|||
T Consensus 823 t~~~yiakaedldehgkf~eae 844 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAE 844 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhh
Confidence 2246788888899999999
No 87
>PHA02608 67 prohead core protein; Provisional
Probab=33.63 E-value=41 Score=22.22 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=26.7
Q ss_pred HHHhccCHHHHHHHHHHcCCccchHHHHHh
Q psy8677 30 KSLDLLSLNHAEQALVNCQDYAGLQLIKSL 59 (99)
Q Consensus 30 ~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l 59 (99)
.|..+++|..|++.|..+=.-+..++|+..
T Consensus 6 eAIKS~DLV~akK~F~~~Me~rt~~li~e~ 35 (80)
T PHA02608 6 EAIKSGDLVEAKKEFASIMEARTEALIEEE 35 (80)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999888888888854
No 88
>PLN03218 maturation of RBCL 1; Provisional
Probab=32.18 E-value=3.3e+02 Score=25.45 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=11.6
Q ss_pred CChHHHHHHHHHHHhccCHHHHHH
Q psy8677 19 PHPRLWKLLADKSLDLLSLNHAEQ 42 (99)
Q Consensus 19 ~h~~lW~~LA~~AL~~~~l~iAe~ 42 (99)
|+..-|..|.......++++-|..
T Consensus 647 PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 647 PDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 344445555555555555444443
No 89
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.54 E-value=3e+02 Score=22.80 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCccchh---hHhHHHHHhhh
Q psy8677 67 MKHAYIAQHQGRFQTAV---YCDIIEYLRRR 94 (99)
Q Consensus 67 ~~~Aei~ay~gkf~EAe---Y~~i~~~~~~~ 94 (99)
..+|+.-+.+|+|++|. |+..-+..+-|
T Consensus 250 ~~na~rr~~~~ry~da~~r~yR~~e~~~q~~ 280 (380)
T TIGR02710 250 LANAERRATQGRYDDAAARLYRALELIVQIR 280 (380)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999 88887766544
No 90
>cd08312 Death_MyD88 Death domain of Myeloid Differentation primary response protein MyD88. Death Domain (DD) of Myeloid Differentiation primary response protein 88 (MyD88). MyD88 is an adaptor protein involved in interleukin-1 receptor (IL-1R)- and Toll-like receptor (TLR)-induced activation of nuclear factor-kappaB (NF-kB) and mitogen activated protein kinase pathways that lead to the induction of proinflammatory cytokines. It is a key component in the signaling pathway of pathogen recognition in the innate immune system. MyD88 contains an N-terminal DD and a C-terminal Toll/IL-1 Receptor (TIR) homology domain that mediates interaction with TLRs and IL-1R. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and
Probab=30.40 E-value=1.2e+02 Score=19.07 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l 62 (99)
..+|+.||..- .|+.-+..+...+.=+--.++..-+..
T Consensus 16 g~DWr~LA~~L----g~~~~~I~~f~~~~sPt~~lL~~W~~r 53 (79)
T cd08312 16 AADWTALAEEM----GFEYLEIRNFETKPSPTEKVLEDWETR 53 (79)
T ss_pred ccCHHHHHHHc----CCCHHHHHHHccCCChHHHHHHHHHhc
Confidence 47999999653 455545445555554444555544443
No 91
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.89 E-value=2.5e+02 Score=22.66 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=56.1
Q ss_pred ccccCHHHHHHHHHhCCC-----hH--HHHHH--HHHHHhccCHHHHHHHHHHcCCccch------------HHHHHhhC
Q psy8677 3 LKNVGLNEAFQFVEAHPH-----PR--LWKLL--ADKSLDLLSLNHAEQALVNCQDYAGL------------QLIKSLRA 61 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h-----~~--lW~~L--A~~AL~~~~l~iAe~AFvr~~d~~~v------------~~I~~l~~ 61 (99)
.++..|..|.++...-.. .. .+..| |-.+-+..++.-|...|-.+-..... ..++.+.+
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 221 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALES 221 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHh
Confidence 456667777766543222 21 22222 44566788899998888877654322 12222222
Q ss_pred CCC------------------HHHHHHHHHHHcCCccchh---hHhHHHHHhhh
Q psy8677 62 LPD------------------DIMKHAYIAQHQGRFQTAV---YCDIIEYLRRR 94 (99)
Q Consensus 62 l~~------------------~~~~~Aei~ay~gkf~EAe---Y~~i~~~~~~~ 94 (99)
+.+ .-..+|+--+.+|+|++|. |+...+....|
T Consensus 222 ~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~r 275 (379)
T PF09670_consen 222 ILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHR 275 (379)
T ss_pred hccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 211 1147888889999999999 99888776554
No 92
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=29.61 E-value=95 Score=20.44 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=24.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHcCCccchHHHHH
Q psy8677 26 LLADKSLDLLSLNHAEQALVNCQDYAGLQLIKS 58 (99)
Q Consensus 26 ~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~ 58 (99)
.-|..|+..+|+..|++...+..+...-..+.+
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~ 96 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNY 96 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 447789999999999999998866544444443
No 93
>PRK11189 lipoprotein NlpI; Provisional
Probab=29.18 E-value=2.6e+02 Score=21.25 Aligned_cols=20 Identities=15% Similarity=-0.012 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCccchh--hHhH
Q psy8677 68 KHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 68 ~~Aei~ay~gkf~EAe--Y~~i 87 (99)
..|.++.-.|++++|. |++.
T Consensus 241 ~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 241 YLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4577788888999988 6544
No 94
>KOG0495|consensus
Probab=28.93 E-value=96 Score=28.37 Aligned_cols=41 Identities=22% Similarity=0.487 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHh----CCC-hHHHHHHHHHHHhccCHHHHHHHHHH
Q psy8677 6 VGLNEAFQFVEA----HPH-PRLWKLLADKSLDLLSLNHAEQALVN 46 (99)
Q Consensus 6 ~~~~eA~~~~~~----~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr 46 (99)
+..+||.++++. -|+ +.+|-+||+-==+..+.+.|+.||..
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 567899999865 354 89999999999999999999999974
No 95
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=28.87 E-value=3.1e+02 Score=25.38 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=28.4
Q ss_pred cCHHHHHH----HHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 6 VGLNEAFQ----FVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 6 ~~~~eA~~----~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
+...+|+. .+...|.......+|......++++-|..+|-++.
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 45666776 56666654333334555568999999999987653
No 96
>KOG0543|consensus
Probab=28.80 E-value=1.7e+02 Score=24.56 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=45.2
Q ss_pred HHHHHHHHhccCHHHHHHHHHHcCCccc-hHHHHHhhCCCCH---H-HHHHHHHHHcCCccchh--hHhH
Q psy8677 25 KLLADKSLDLLSLNHAEQALVNCQDYAG-LQLIKSLRALPDD---I-MKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 25 ~~LA~~AL~~~~l~iAe~AFvr~~d~~~-v~~I~~l~~l~~~---~-~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
.-.+.......++|+| -|+.++++|.. ++.+++.-.+++. . -|+|+.++-.|.|+.|. |+++
T Consensus 249 ~~~~~~~k~~~~lNlA-~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 249 QKKAEALKLACHLNLA-ACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred HHHHHHHHHHHhhHHH-HHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4556667777778877 48899999873 5566666566442 2 38999999999999998 6554
No 97
>PRK14574 hmsH outer membrane protein; Provisional
Probab=28.73 E-value=1.6e+02 Score=26.68 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=48.7
Q ss_pred cccccCHHHHHHHHHhCCC--h--------------HHH----HHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhC
Q psy8677 2 YLKNVGLNEAFQFVEAHPH--P--------------RLW----KLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRA 61 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h--~--------------~lW----~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~ 61 (99)
.||..++++|.+++....+ | .+| .++|...+-.+++.-|+..+-.+- ..
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~-----------~~ 445 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS-----------ST 445 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------Hh
Confidence 4788999999998876443 2 122 346888888999999987665431 12
Q ss_pred CCC-HH--HHHHHHHHHcCCccchh
Q psy8677 62 LPD-DI--MKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 62 l~~-~~--~~~Aei~ay~gkf~EAe 83 (99)
-|. .. +.+|+|..-+|++++|+
T Consensus 446 aP~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 446 APANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 232 22 36888888888888888
No 98
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.51 E-value=63 Score=28.13 Aligned_cols=42 Identities=24% Similarity=0.134 Sum_probs=38.1
Q ss_pred cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHH
Q psy8677 2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQA 43 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~A 43 (99)
+|-.+.|+.|+.++-+-.+.-|.--|=-.|+..+++..|+.|
T Consensus 504 LLR~~rfekAFlLAvdi~~~DLFmdlh~~A~~~ge~~La~~A 545 (545)
T PF11768_consen 504 LLRYQRFEKAFLLAVDIGDRDLFMDLHYLAKDKGELALAEVA 545 (545)
T ss_pred HHHhhHHHHHHHHHHhccchHHHHHHHHHHHhccchhhhhcC
Confidence 466789999999999999999999999999999999999865
No 99
>PF06169 DUF982: Protein of unknown function (DUF982); InterPro: IPR010385 This family consists of several hypothetical proteins from Rhizobium meliloti (Sinorhizobium meliloti), Rhizobium loti (Mesorhizobium loti) and Agrobacterium tumefaciens. The function of this family is unknown.; PDB: 2KPQ_A.
Probab=27.36 E-value=1.2e+02 Score=19.00 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=11.2
Q ss_pred HHhcc-CHHHHHHHHHHc
Q psy8677 31 SLDLL-SLNHAEQALVNC 47 (99)
Q Consensus 31 AL~~~-~l~iAe~AFvr~ 47 (99)
||... ..+.|+.||+..
T Consensus 49 Al~g~~~~e~AR~AFi~A 66 (76)
T PF06169_consen 49 ALDGRKPPEDARRAFIAA 66 (76)
T ss_dssp HHTT-S-HHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHH
Confidence 44433 489999999874
No 100
>KOG2066|consensus
Probab=27.26 E-value=82 Score=28.86 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=41.6
Q ss_pred ccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhC
Q psy8677 5 NVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRA 61 (99)
Q Consensus 5 ~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~ 61 (99)
-..++.|++||+....+.||.-|-...+++=+|-.|-.- =..+.+.+-+|.++.+
T Consensus 674 l~die~AIefvKeq~D~eLWe~LI~~~ldkPe~~~~ll~--i~~~~dpl~ii~kip~ 728 (846)
T KOG2066|consen 674 LRDIEKAIEFVKEQDDSELWEDLINYSLDKPEFIKALLN--IGEHEDPLLIIRKIPD 728 (846)
T ss_pred hhCHHHHHHHHHhcCCHHHHHHHHHHhhcCcHHHHHHHH--hhhcccHHHHHhcCCC
Confidence 357889999999999999999999999998887766511 1123566667777753
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=27.20 E-value=2.3e+02 Score=20.02 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC------HHHHHHHHHHHcCCccchh--hHhH
Q psy8677 19 PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD------DIMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 19 ~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~------~~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
.++..+-.+|...+..++++-|...|.++-. .-|+ .-...|.++.-.|++++|. |.+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-----------~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALES-----------RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF 96 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3456788899999999999999887765421 1121 1256788888899999998 5543
No 102
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=27.20 E-value=2.9e+02 Score=23.55 Aligned_cols=44 Identities=11% Similarity=-0.000 Sum_probs=29.4
Q ss_pred cccCHHHHHHHHHhCC--ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVEAHP--HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~~~~--h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..+.+++|.++...-+ +..-|..|...-...++.+-|..-|-..
T Consensus 271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4567777777776644 3456777777777777777777666544
No 103
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=26.76 E-value=78 Score=22.79 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=34.3
Q ss_pred CHHHHHHHHHhCCCh----HHHHHHHHHHHhccCHHHHHHHHHHcCCcc
Q psy8677 7 GLNEAFQFVEAHPHP----RLWKLLADKSLDLLSLNHAEQALVNCQDYA 51 (99)
Q Consensus 7 ~~~eA~~~~~~~~h~----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~ 51 (99)
.++.-++-.+.+..+ .-|.-||..-..-++++-|-++|.++.||.
T Consensus 18 ~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~ 66 (177)
T PF10602_consen 18 KLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC 66 (177)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 344455555555442 356789999999999999999999999985
No 104
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=26.33 E-value=1.1e+02 Score=15.92 Aligned_cols=23 Identities=9% Similarity=-0.142 Sum_probs=18.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHH
Q psy8677 24 WKLLADKSLDLLSLNHAEQALVN 46 (99)
Q Consensus 24 W~~LA~~AL~~~~l~iAe~AFvr 46 (99)
|..||..-...++++-|..+|-+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66788888888999999888876
No 105
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.28 E-value=3e+02 Score=21.11 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=53.7
Q ss_pred ccccCHHHHHH----HHHhCCCh----HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC---CCHHHHHHH
Q psy8677 3 LKNVGLNEAFQ----FVEAHPHP----RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL---PDDIMKHAY 71 (99)
Q Consensus 3 le~~~~~eA~~----~~~~~~h~----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l---~~~~~~~Ae 71 (99)
+.++.+++|+. |+...|.. .-|-.||..-...++++-|...|.++ |+.--+- ++--...|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v--------v~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV--------VKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHHCCCCcchhHHHHHHHH
Confidence 45678888874 56777764 57889999999999999999887664 2222111 112235788
Q ss_pred HHHHcCCccchh--hHhH
Q psy8677 72 IAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 72 i~ay~gkf~EAe--Y~~i 87 (99)
++--.|++++|- |.++
T Consensus 226 ~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 888889999988 5543
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=26.24 E-value=1.9e+02 Score=21.72 Aligned_cols=46 Identities=17% Similarity=0.057 Sum_probs=36.2
Q ss_pred ccccCHHHHHHHHHhCCC---------hHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEAHPH---------PRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h---------~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
.+.|.+++|..++..... ...|-.+|...+..++++-|...|-+..
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 467899999998765321 1357789999999999999999998864
No 107
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=25.45 E-value=95 Score=19.03 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677 9 NEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQD 49 (99)
Q Consensus 9 ~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d 49 (99)
.+.+..++.+|...+|+.||.. +.|.-.+.-.+....
T Consensus 5 ~~~~~~l~~~~~g~~W~~la~~----Lg~~~~~i~~i~~~~ 41 (88)
T smart00005 5 REKLAKLLDHPLGLDWRELARK----LGLSEADIDQIRTEA 41 (88)
T ss_pred HHHHHHHHcCccchHHHHHHHH----cCCCHHHHHHHHHHC
Confidence 4566777888788999999853 444444444444444
No 108
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=25.20 E-value=47 Score=16.08 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCccchh--hHhH
Q psy8677 67 MKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 67 ~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
...|.++...|++++|. |..+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 46788888899999998 5443
No 109
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=24.51 E-value=43 Score=25.45 Aligned_cols=22 Identities=18% Similarity=0.145 Sum_probs=19.8
Q ss_pred HHHhccCHHHHHHHHHHcCCcc
Q psy8677 30 KSLDLLSLNHAEQALVNCQDYA 51 (99)
Q Consensus 30 ~AL~~~~l~iAe~AFvr~~d~~ 51 (99)
.|...+|+++|+..|.|+.+..
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~ 23 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLL 23 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHH
Confidence 4788999999999999998866
No 110
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=24.07 E-value=63 Score=20.72 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q psy8677 8 LNEAFQFVEAHPHPRLWKLLADK 30 (99)
Q Consensus 8 ~~eA~~~~~~~~h~~lW~~LA~~ 30 (99)
|+.+|.+++.+.- ++|+-||..
T Consensus 1 ~~~~f~~i~~~lG-~~Wk~laR~ 22 (86)
T cd08306 1 LNAAFDVICENVG-RDWRKLARK 22 (86)
T ss_pred ChHHHHHHHHHHh-hhHHHHHHH
Confidence 5788999998664 789999854
No 111
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.94 E-value=1.1e+02 Score=20.09 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=28.4
Q ss_pred cCHHHHHHHHHhCCChHHHHHHHHHH-HhccCHHHHHHH
Q psy8677 6 VGLNEAFQFVEAHPHPRLWKLLADKS-LDLLSLNHAEQA 43 (99)
Q Consensus 6 ~~~~eA~~~~~~~~h~~lW~~LA~~A-L~~~~l~iAe~A 43 (99)
-.+..++.++..++....|+-||..= |...+++.++.-
T Consensus 4 ~~l~~~f~~i~~~V~~~~Wk~laR~LGLse~~I~~i~~~ 42 (96)
T cd08315 4 ETLRRSFDHFIKEVPFDSWNRLMRQLGLSENEIDVAKAN 42 (96)
T ss_pred hHHHHHHHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35788999999999999999998654 555555555544
No 112
>PF13934 ELYS: Nuclear pore complex assembly
Probab=23.89 E-value=1.2e+02 Score=22.85 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=27.6
Q ss_pred cccccCHHHHHHHHHhCCChH---HHHHHHHHHHhcc
Q psy8677 2 YLKNVGLNEAFQFVEAHPHPR---LWKLLADKSLDLL 35 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h~~---lW~~LA~~AL~~~ 35 (99)
.|.++.+-||+.|.+..+.+. +|..|-+..+...
T Consensus 150 ~La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 ALANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 367889999999999999866 8988887776544
No 113
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=23.37 E-value=1.6e+02 Score=19.43 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=39.7
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHH
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIM 67 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~ 67 (99)
++.+.+++|.+++. ..| ++..|..|-..=...++..-|...|-++... |-+.+---|++++
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~----l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR----LREELGIEPSPET 138 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----HHHHHS----HHH
T ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH----HHHHhCcCcCHHH
Confidence 45677888887664 455 5889999999999999999999999887542 2233434455544
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=22.52 E-value=1.9e+02 Score=20.87 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=30.9
Q ss_pred HHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 9 NEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 9 ~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
++|.+.. +..| ++.-|..||..+.+.++++-|..+|-++-
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4554443 3344 68899999999999999999999998863
No 115
>KOG2076|consensus
Probab=22.36 E-value=2.4e+02 Score=26.17 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=51.0
Q ss_pred cccccCHHHHHHHH---HhCCC---hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC---CHHHHHHHH
Q psy8677 2 YLKNVGLNEAFQFV---EAHPH---PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYI 72 (99)
Q Consensus 2 ~le~~~~~eA~~~~---~~~~h---~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~---~~~~~~Aei 72 (99)
+++.+++++|++|- +.++. .-.|--+|..=++..+.+.|-.+|-++=+ ..| +--+..|+|
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-----------~~p~~~D~Ri~Lasl 492 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI-----------LAPDNLDARITLASL 492 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh-----------cCCCchhhhhhHHHH
Confidence 45778899998873 33332 33899999999999999999988865422 222 233568888
Q ss_pred HHHcCCccchh
Q psy8677 73 AQHQGRFQTAV 83 (99)
Q Consensus 73 ~ay~gkf~EAe 83 (99)
+.-+|++++|-
T Consensus 493 ~~~~g~~Ekal 503 (895)
T KOG2076|consen 493 YQQLGNHEKAL 503 (895)
T ss_pred HHhcCCHHHHH
Confidence 88888888764
No 116
>KOG0292|consensus
Probab=22.31 E-value=1.3e+02 Score=28.42 Aligned_cols=45 Identities=27% Similarity=0.192 Sum_probs=33.6
Q ss_pred HHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH--HHHHHHHHHcCCccchh--hHhHH
Q psy8677 29 DKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI--MKHAYIAQHQGRFQTAV--YCDII 88 (99)
Q Consensus 29 ~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~--~~~Aei~ay~gkf~EAe--Y~~i~ 88 (99)
+.||+-+|+++|-.+- +++++++ -+.+|.+..||+.+=|| |.+++
T Consensus 651 ~LaLe~gnle~ale~a---------------kkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAA---------------KKLDDKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred eeehhcCCHHHHHHHH---------------HhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 3578888998885443 3444444 48899999999999999 77654
No 117
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=21.34 E-value=1.6e+02 Score=16.31 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=20.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677 25 KLLADKSLDLLSLNHAEQALVNCQD 49 (99)
Q Consensus 25 ~~LA~~AL~~~~l~iAe~AFvr~~d 49 (99)
-.||+.++++-+|+-|-.=|.+|-+
T Consensus 5 ~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 5 DLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5799999999999999877776633
No 118
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=21.14 E-value=2.3e+02 Score=19.94 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=29.1
Q ss_pred cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q psy8677 2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVN 46 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr 46 (99)
++++|.+++|+.+...+++|.+=-.+|..+=..+--+-++.=+.|
T Consensus 50 LmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 50 LMNRGDYQEALLLPQCHCYPDLEPWAALCAWKLGLASALESRLTR 94 (116)
T ss_dssp HHHTT-HHHHHHHHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHhhHHHHHHHHhcccCCCccHHHHHHHHHHhhccHHHHHHHHHH
Confidence 467899999999999999998866666666555555555544443
No 119
>cd08802 Death_UNC5B Death domain found in Uncoordinated-5B. Death Domain (DD) found in Uncoordinated-5B (UNC5B). UNC5B is part of the UNC-5 homolog family. It is a receptor for the secreted netrin-1 and plays a role in axonal guidance, angiogenesis, and apoptosis. UNC5B signaling is involved in the netrin-1-induced proliferation and migration of renal proximal tubular cells. It is also required for vascular patterning during embryonic development, and its activation inhibits sprouting angiogenesis. UNC5 proteins are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activatio
Probab=20.96 E-value=54 Score=21.58 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=12.1
Q ss_pred CChHHHHHHHHHHHhccCHH
Q psy8677 19 PHPRLWKLLADKSLDLLSLN 38 (99)
Q Consensus 19 ~h~~lW~~LA~~AL~~~~l~ 38 (99)
+...||+.||+ +++|+
T Consensus 18 ~~g~DW~~LAe----kL~ld 33 (84)
T cd08802 18 SRGNDWRLLAQ----KLSMD 33 (84)
T ss_pred CCCCcHHHHHH----HcCch
Confidence 34789999995 56666
No 120
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=20.55 E-value=78 Score=21.01 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=13.6
Q ss_pred HHHHhCCChHHHHHHH
Q psy8677 13 QFVEAHPHPRLWKLLA 28 (99)
Q Consensus 13 ~~~~~~~h~~lW~~LA 28 (99)
-|++.|.|+.-|..|=
T Consensus 40 lfierGR~ETtW~vLR 55 (89)
T PF08356_consen 40 LFIERGRHETTWTVLR 55 (89)
T ss_pred HHHHhCcchHHHHHHH
Confidence 4789999999999873
No 121
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=20.54 E-value=1.9e+02 Score=20.72 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=23.9
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 18 HPHPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 18 ~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..++..+-.-|..+|.+++++-|.+.|-.+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L 36 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEAL 36 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 346778888899999999999997665544
No 122
>KOG1129|consensus
Probab=20.39 E-value=39 Score=28.49 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=44.7
Q ss_pred CHHHHHHHHH-hCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC-CHH-HHHHHHHHHcCCccchh
Q psy8677 7 GLNEAFQFVE-AHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP-DDI-MKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 7 ~~~eA~~~~~-~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~-~~~-~~~Aei~ay~gkf~EAe 83 (99)
+|..|...+. .++..--|-.|+..|..-+||+.|..||--+ +.+ +-+ ++. .-.|-+.+-.|+.++|-
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla-------L~~---d~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA-------LTS---DAQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH-------hcc---CcchHHHHHhHHHHHhhcCchHHHH
Confidence 4667777776 5556778999999999999999999999533 111 111 111 13455666777777776
Done!