Query psy8677
Match_columns 99
No_of_seqs 103 out of 177
Neff 5.3
Searched_HMMs 29240
Date Sat Aug 17 00:55:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 99.3 9.3E-12 3.2E-16 99.4 8.6 81 3-83 663-743 (814)
2 3mkq_B Coatomer subunit alpha; 99.2 6.6E-11 2.3E-15 86.2 8.5 76 3-78 16-91 (177)
3 1b89_A Protein (clathrin heavy 98.5 8.4E-09 2.9E-13 83.9 0.0 75 2-89 12-88 (449)
4 2xcb_A PCRH, regulatory protei 95.3 0.083 2.8E-06 33.6 7.0 76 3-86 29-111 (142)
5 2vgx_A Chaperone SYCD; alterna 95.2 0.082 2.8E-06 34.5 7.0 76 3-86 32-114 (148)
6 3gw4_A Uncharacterized protein 95.1 0.37 1.3E-05 31.0 10.0 84 2-93 2-98 (203)
7 3gyz_A Chaperone protein IPGC; 94.3 0.35 1.2E-05 32.2 8.4 77 3-87 47-130 (151)
8 2xev_A YBGF; tetratricopeptide 94.1 0.32 1.1E-05 29.3 7.3 73 3-83 13-96 (129)
9 3gw4_A Uncharacterized protein 93.8 0.8 2.7E-05 29.4 10.0 80 8-95 89-181 (203)
10 3upv_A Heat shock protein STI1 93.7 0.25 8.5E-06 30.2 6.3 77 3-87 15-98 (126)
11 1elw_A TPR1-domain of HOP; HOP 93.5 0.23 7.9E-06 28.7 5.6 73 3-83 15-92 (118)
12 2vyi_A SGTA protein; chaperone 93.3 0.69 2.4E-05 27.0 7.6 73 3-83 23-100 (131)
13 1hh8_A P67PHOX, NCF-2, neutrop 93.2 0.3 1E-05 32.0 6.3 77 3-87 17-97 (213)
14 2kck_A TPR repeat; tetratricop 93.1 0.51 1.8E-05 27.0 6.6 75 3-83 17-97 (112)
15 3q49_B STIP1 homology and U bo 93.0 0.4 1.4E-05 29.1 6.4 77 3-87 20-103 (137)
16 1hxi_A PEX5, peroxisome target 92.8 0.37 1.3E-05 30.2 6.2 76 3-86 28-110 (121)
17 3sz7_A HSC70 cochaperone (SGT) 92.6 0.42 1.4E-05 30.6 6.3 73 3-83 22-99 (164)
18 1na0_A Designed protein CTPR3; 92.5 0.79 2.7E-05 26.5 7.0 77 3-87 20-103 (125)
19 2q7f_A YRRB protein; TPR, prot 92.4 0.79 2.7E-05 30.1 7.6 42 5-46 104-150 (243)
20 4gco_A Protein STI-1; structur 92.1 1 3.6E-05 28.3 7.7 76 3-86 24-106 (126)
21 3mkr_A Coatomer subunit epsilo 91.8 0.43 1.5E-05 34.5 6.2 46 3-48 112-157 (291)
22 1xi4_A Clathrin heavy chain; a 91.7 0.44 1.5E-05 44.3 7.3 49 4-52 1088-1136(1630)
23 2lni_A Stress-induced-phosphop 91.5 0.48 1.6E-05 28.1 5.3 73 3-83 27-104 (133)
24 2dba_A Smooth muscle cell asso 91.5 1.4 4.9E-05 26.5 8.1 73 3-83 39-119 (148)
25 1xnf_A Lipoprotein NLPI; TPR, 91.3 1.7 5.8E-05 29.0 8.4 72 4-83 55-131 (275)
26 3as5_A MAMA; tetratricopeptide 91.2 1 3.6E-05 27.8 6.9 16 68-83 149-164 (186)
27 2vq2_A PILW, putative fimbrial 91.2 0.75 2.6E-05 29.7 6.3 16 68-83 152-167 (225)
28 1a17_A Serine/threonine protei 91.2 0.82 2.8E-05 28.2 6.3 72 4-83 25-101 (166)
29 2r5s_A Uncharacterized protein 91.2 1.6 5.3E-05 28.4 8.0 84 3-86 17-133 (176)
30 2gw1_A Mitochondrial precursor 91.0 0.45 1.6E-05 35.0 5.6 77 3-87 17-99 (514)
31 2fo7_A Synthetic consensus TPR 90.9 1.3 4.5E-05 25.6 6.7 44 4-47 13-61 (136)
32 2c2l_A CHIP, carboxy terminus 90.9 1.2 4.1E-05 31.7 7.7 73 3-83 15-92 (281)
33 3uq3_A Heat shock protein STI1 90.8 1.1 3.7E-05 29.5 7.0 72 4-83 151-227 (258)
34 1b89_A Protein (clathrin heavy 90.5 0.29 1E-05 39.6 4.5 68 4-83 160-227 (449)
35 3ieg_A DNAJ homolog subfamily 90.4 1 3.5E-05 31.0 6.7 77 3-87 14-97 (359)
36 4ga2_A E3 SUMO-protein ligase 90.2 2.2 7.5E-05 27.3 7.9 73 3-83 42-119 (150)
37 2y4t_A DNAJ homolog subfamily 90.2 1.4 4.7E-05 32.0 7.6 77 3-87 37-120 (450)
38 3qou_A Protein YBBN; thioredox 90.2 0.95 3.2E-05 32.3 6.6 85 3-87 128-245 (287)
39 3mkr_A Coatomer subunit epsilo 90.2 0.97 3.3E-05 32.6 6.7 67 4-83 77-150 (291)
40 3cv0_A Peroxisome targeting si 90.2 1.7 5.8E-05 29.7 7.7 77 3-87 32-115 (327)
41 2xpi_A Anaphase-promoting comp 90.0 0.67 2.3E-05 35.2 5.9 75 3-87 486-576 (597)
42 2fo7_A Synthetic consensus TPR 90.0 1.8 6E-05 25.1 7.3 76 4-87 47-129 (136)
43 1elr_A TPR2A-domain of HOP; HO 89.9 1.8 6.3E-05 25.2 7.4 76 3-83 15-99 (131)
44 2ho1_A Type 4 fimbrial biogene 89.6 2.2 7.6E-05 28.3 7.8 17 67-83 213-229 (252)
45 2q7f_A YRRB protein; TPR, prot 89.6 2.2 7.7E-05 27.8 7.7 44 4-47 69-117 (243)
46 3ma5_A Tetratricopeptide repea 89.6 2.1 7.3E-05 25.4 8.1 63 20-90 6-70 (100)
47 4eqf_A PEX5-related protein; a 89.5 1.9 6.6E-05 30.5 7.8 76 4-87 225-307 (365)
48 2vq2_A PILW, putative fimbrial 89.1 2.3 8E-05 27.2 7.4 44 4-47 20-68 (225)
49 3uq3_A Heat shock protein STI1 89.0 1.9 6.6E-05 28.3 7.0 77 3-87 16-105 (258)
50 3cv0_A Peroxisome targeting si 89.0 2.3 7.7E-05 29.0 7.6 17 67-83 244-260 (327)
51 3as5_A MAMA; tetratricopeptide 89.0 2.7 9.2E-05 25.8 7.8 16 68-83 115-130 (186)
52 3hym_B Cell division cycle pro 89.0 2.2 7.5E-05 29.1 7.5 44 4-47 68-117 (330)
53 2ho1_A Type 4 fimbrial biogene 88.9 1.8 6E-05 28.8 6.9 46 4-49 83-133 (252)
54 3urz_A Uncharacterized protein 88.8 1.4 4.7E-05 29.7 6.3 78 2-87 14-114 (208)
55 4eqf_A PEX5-related protein; a 88.8 1.6 5.4E-05 31.0 6.9 77 3-87 76-159 (365)
56 3hym_B Cell division cycle pro 88.6 3 0.0001 28.4 8.0 83 7-89 106-221 (330)
57 3vtx_A MAMA; tetratricopeptide 88.4 2.3 7.9E-05 27.1 7.0 42 5-46 18-64 (184)
58 4i17_A Hypothetical protein; T 88.4 3.8 0.00013 27.1 8.3 70 3-83 18-96 (228)
59 2fbn_A 70 kDa peptidylprolyl i 88.4 0.79 2.7E-05 30.2 4.8 73 3-83 49-142 (198)
60 1fch_A Peroxisomal targeting s 87.8 1.2 4.1E-05 31.3 5.7 76 3-86 75-157 (368)
61 1w3b_A UDP-N-acetylglucosamine 87.6 2.8 9.7E-05 30.0 7.7 84 4-87 249-365 (388)
62 3rkv_A Putative peptidylprolyl 87.6 0.74 2.5E-05 29.4 4.1 54 22-83 64-117 (162)
63 2pl2_A Hypothetical conserved 87.4 1.3 4.4E-05 30.0 5.5 70 5-83 97-171 (217)
64 3edt_B KLC 2, kinesin light ch 87.4 4.6 0.00016 26.6 8.3 83 4-91 55-157 (283)
65 1wao_1 Serine/threonine protei 87.2 2 6.8E-05 33.5 7.1 74 2-83 16-94 (477)
66 2pl2_A Hypothetical conserved 87.1 1.5 5.1E-05 29.7 5.7 76 3-88 129-212 (217)
67 3u4t_A TPR repeat-containing p 86.7 1.4 4.9E-05 29.6 5.3 47 3-49 14-65 (272)
68 3ieg_A DNAJ homolog subfamily 86.3 3.1 0.00011 28.5 7.0 73 3-83 131-208 (359)
69 3ro3_A PINS homolog, G-protein 86.3 3.7 0.00013 24.4 9.4 65 22-91 90-159 (164)
70 3edt_B KLC 2, kinesin light ch 86.1 1.8 6E-05 28.7 5.5 79 8-91 24-115 (283)
71 1w3b_A UDP-N-acetylglucosamine 85.1 4.1 0.00014 29.1 7.4 42 4-45 11-57 (388)
72 1hh8_A P67PHOX, NCF-2, neutrop 85.0 5.9 0.0002 25.6 8.2 81 3-83 48-141 (213)
73 2xpi_A Anaphase-promoting comp 85.0 3.7 0.00013 31.0 7.4 74 3-85 95-174 (597)
74 3ro2_A PINS homolog, G-protein 84.9 6.8 0.00023 26.2 8.4 84 3-91 16-113 (338)
75 3sf4_A G-protein-signaling mod 84.3 7.4 0.00025 27.3 8.3 84 3-91 20-117 (406)
76 3fp2_A TPR repeat-containing p 84.2 5.1 0.00017 29.6 7.7 44 4-47 288-336 (537)
77 3vtx_A MAMA; tetratricopeptide 83.7 3.6 0.00012 26.2 6.0 58 18-83 2-59 (184)
78 1fch_A Peroxisomal targeting s 83.7 9 0.00031 26.7 9.1 17 67-83 334-350 (368)
79 2kat_A Uncharacterized protein 83.7 5 0.00017 23.7 6.5 65 15-87 12-79 (115)
80 2e2e_A Formate-dependent nitri 83.0 3.6 0.00012 26.2 5.8 45 3-47 21-70 (177)
81 1na3_A Designed protein CTPR2; 82.9 2.7 9.3E-05 23.3 4.7 55 21-83 9-63 (91)
82 1ihg_A Cyclophilin 40; ppiase 82.2 2.2 7.6E-05 32.1 5.2 55 21-83 273-327 (370)
83 1xnf_A Lipoprotein NLPI; TPR, 81.9 2.6 8.9E-05 28.1 4.9 76 4-87 17-103 (275)
84 1na3_A Designed protein CTPR2; 81.6 3.8 0.00013 22.6 5.0 46 3-48 20-70 (91)
85 2hr2_A Hypothetical protein; a 81.4 11 0.00037 26.1 10.2 64 23-91 59-132 (159)
86 3nf1_A KLC 1, kinesin light ch 81.3 4 0.00014 27.5 5.8 82 4-90 39-140 (311)
87 3q49_B STIP1 homology and U bo 81.3 6.5 0.00022 23.4 6.3 57 19-83 7-63 (137)
88 2gw1_A Mitochondrial precursor 81.3 12 0.0004 27.3 8.6 45 3-47 349-398 (514)
89 4i17_A Hypothetical protein; T 81.3 7.1 0.00024 25.7 7.0 80 4-86 54-142 (228)
90 2lni_A Stress-induced-phosphop 80.9 6.3 0.00021 23.0 6.1 46 3-48 61-111 (133)
91 2l6j_A TPR repeat-containing p 80.8 4.8 0.00016 23.0 5.4 27 21-47 4-30 (111)
92 2if4_A ATFKBP42; FKBP-like, al 80.7 2.1 7.3E-05 31.5 4.5 53 23-83 232-284 (338)
93 2e2e_A Formate-dependent nitri 80.6 8.6 0.00029 24.3 7.4 73 3-83 55-135 (177)
94 1kt0_A FKBP51, 51 kDa FK506-bi 80.2 3.9 0.00014 31.4 6.0 73 3-83 328-405 (457)
95 2kc7_A BFR218_protein; tetratr 80.2 3.7 0.00013 23.5 4.7 45 3-47 11-61 (99)
96 1p5q_A FKBP52, FK506-binding p 79.9 7.7 0.00026 28.3 7.3 44 4-47 159-222 (336)
97 3mkq_A Coatomer beta'-subunit; 79.9 3.9 0.00013 32.3 6.0 47 6-52 708-754 (814)
98 1p5q_A FKBP52, FK506-binding p 79.8 2.2 7.4E-05 31.3 4.3 79 3-89 207-293 (336)
99 1kt0_A FKBP51, 51 kDa FK506-bi 79.1 8.8 0.0003 29.4 7.7 72 4-83 280-371 (457)
100 4a1s_A PINS, partner of inscut 78.7 15 0.00052 26.1 9.7 84 3-91 59-156 (411)
101 4ga2_A E3 SUMO-protein ligase 78.3 6.5 0.00022 25.0 5.8 77 3-87 8-91 (150)
102 3u4t_A TPR repeat-containing p 78.1 12 0.00043 24.8 9.4 45 4-48 86-135 (272)
103 3k9i_A BH0479 protein; putativ 78.0 8.8 0.0003 22.9 6.2 55 21-83 27-81 (117)
104 4a1s_A PINS, partner of inscut 77.9 16 0.00055 25.9 8.7 54 22-83 224-283 (411)
105 3fp2_A TPR repeat-containing p 77.8 12 0.00039 27.7 7.7 77 3-87 321-404 (537)
106 2y4t_A DNAJ homolog subfamily 77.7 7 0.00024 28.2 6.4 77 3-87 154-237 (450)
107 3mv2_B Coatomer subunit epsilo 77.7 7.7 0.00026 29.6 6.9 48 4-51 112-166 (310)
108 1elr_A TPR2A-domain of HOP; HO 77.7 5.2 0.00018 23.1 4.8 55 21-83 4-58 (131)
109 3ro3_A PINS homolog, G-protein 77.3 8.9 0.0003 22.7 9.4 65 22-91 50-119 (164)
110 2vsy_A XCC0866; transferase, g 76.7 5.2 0.00018 30.9 5.8 16 68-83 96-111 (568)
111 2kat_A Uncharacterized protein 76.5 8.1 0.00028 22.8 5.6 46 3-48 30-80 (115)
112 4gcn_A Protein STI-1; structur 76.3 7.4 0.00025 24.1 5.6 52 22-83 9-62 (127)
113 4abn_A Tetratricopeptide repea 76.3 4.1 0.00014 31.3 5.1 73 6-83 193-278 (474)
114 3ro2_A PINS homolog, G-protein 76.1 15 0.0005 24.5 7.9 63 21-88 263-330 (338)
115 4gyw_A UDP-N-acetylglucosamine 76.0 9.7 0.00033 31.8 7.6 26 21-46 77-102 (723)
116 3ma5_A Tetratricopeptide repea 75.7 6.3 0.00022 23.3 4.9 45 3-47 18-67 (100)
117 3upv_A Heat shock protein STI1 75.4 10 0.00036 22.5 6.0 55 21-83 4-58 (126)
118 2l6j_A TPR repeat-containing p 75.1 9.2 0.00032 21.7 5.9 79 3-83 15-98 (111)
119 1xi4_A Clathrin heavy chain; a 74.9 4.6 0.00016 37.7 5.7 44 4-47 1233-1276(1630)
120 2vsy_A XCC0866; transferase, g 74.8 5.7 0.0002 30.7 5.6 16 68-83 130-148 (568)
121 1na0_A Designed protein CTPR3; 74.7 9.4 0.00032 21.6 6.0 59 21-87 9-69 (125)
122 3sz7_A HSC70 cochaperone (SGT) 74.6 7.9 0.00027 24.4 5.4 56 20-83 10-65 (164)
123 4gyw_A UDP-N-acetylglucosamine 74.2 8.6 0.0003 32.1 6.8 45 3-47 20-69 (723)
124 2pzi_A Probable serine/threoni 73.9 8.6 0.00029 31.1 6.6 72 4-83 403-487 (681)
125 2r5s_A Uncharacterized protein 73.9 15 0.0005 23.5 8.4 57 20-87 107-170 (176)
126 2kck_A TPR repeat; tetratricop 73.3 7 0.00024 21.9 4.5 47 3-49 51-105 (112)
127 2vgx_A Chaperone SYCD; alterna 72.7 10 0.00034 24.2 5.6 45 3-47 66-115 (148)
128 2dba_A Smooth muscle cell asso 71.7 12 0.00042 22.2 5.6 45 3-47 76-125 (148)
129 3q15_A PSP28, response regulat 71.3 26 0.00088 25.2 9.8 76 8-91 164-252 (378)
130 1elw_A TPR1-domain of HOP; HOP 71.2 11 0.00039 21.1 5.6 47 3-49 49-100 (118)
131 1ouv_A Conserved hypothetical 69.8 18 0.0006 24.5 6.6 44 4-47 18-68 (273)
132 4abn_A Tetratricopeptide repea 69.7 4.8 0.00016 30.9 4.0 73 3-86 113-204 (474)
133 1a17_A Serine/threonine protei 69.2 16 0.00056 22.1 6.0 55 21-83 13-67 (166)
134 2pzi_A Probable serine/threoni 68.9 28 0.00094 28.1 8.5 81 3-83 444-554 (681)
135 3sf4_A G-protein-signaling mod 68.4 27 0.00093 24.3 9.7 54 22-83 188-247 (406)
136 4gco_A Protein STI-1; structur 68.0 16 0.00054 22.6 5.7 45 3-47 58-107 (126)
137 2vyi_A SGTA protein; chaperone 67.4 15 0.00051 20.9 5.7 68 4-79 58-130 (131)
138 2xcb_A PCRH, regulatory protei 67.2 16 0.00056 22.5 5.6 45 3-47 63-112 (142)
139 3ulq_A Response regulator aspa 66.7 32 0.0011 24.5 9.9 74 10-88 209-291 (383)
140 3qky_A Outer membrane assembly 66.2 17 0.00057 24.6 5.9 45 3-47 26-78 (261)
141 3qou_A Protein YBBN; thioredox 64.2 12 0.0004 26.5 4.9 56 20-86 116-176 (287)
142 4f3v_A ESX-1 secretion system 64.0 7.8 0.00027 29.1 4.1 78 4-87 147-234 (282)
143 3nf1_A KLC 1, kinesin light ch 63.7 30 0.001 23.1 6.9 66 21-91 27-99 (311)
144 2xev_A YBGF; tetratricopeptide 61.7 21 0.00073 20.8 6.4 55 24-86 5-64 (129)
145 4f3v_A ESX-1 secretion system 61.3 13 0.00043 27.9 4.8 80 2-87 112-197 (282)
146 3gyz_A Chaperone protein IPGC; 60.8 15 0.00052 24.0 4.7 45 3-47 81-130 (151)
147 1hxi_A PEX5, peroxisome target 59.1 27 0.00094 21.2 5.6 57 22-86 18-76 (121)
148 3k9i_A BH0479 protein; putativ 59.0 25 0.00087 20.7 5.6 45 3-47 38-87 (117)
149 4ard_A Capsid protein P27; vir 58.4 5.8 0.0002 26.8 2.3 21 17-37 33-53 (116)
150 3n71_A Histone lysine methyltr 56.7 72 0.0025 25.2 9.1 81 4-89 321-421 (490)
151 1wao_1 Serine/threonine protei 56.1 36 0.0012 26.3 6.8 73 3-83 51-130 (477)
152 2if4_A ATFKBP42; FKBP-like, al 55.0 19 0.00064 26.3 4.8 48 3-50 241-293 (338)
153 2qfc_A PLCR protein; TPR, HTH, 55.0 32 0.0011 23.8 5.9 80 4-88 167-264 (293)
154 3qww_A SET and MYND domain-con 54.2 75 0.0026 24.7 9.3 80 6-90 312-411 (433)
155 3rkv_A Putative peptidylprolyl 53.8 37 0.0013 21.0 5.6 45 3-47 74-123 (162)
156 1hz4_A MALT regulatory protein 53.5 55 0.0019 23.0 9.4 81 3-91 25-123 (373)
157 2fbn_A 70 kDa peptidylprolyl i 52.7 36 0.0012 21.9 5.5 45 3-47 99-148 (198)
158 3qky_A Outer membrane assembly 52.1 20 0.0007 24.1 4.3 28 20-47 14-41 (261)
159 3urz_A Uncharacterized protein 52.1 37 0.0013 22.4 5.6 45 3-47 65-114 (208)
160 4gcn_A Protein STI-1; structur 50.8 40 0.0014 20.5 8.5 77 3-86 19-108 (127)
161 2c2l_A CHIP, carboxy terminus 50.5 52 0.0018 23.0 6.4 56 20-83 3-58 (281)
162 3ulq_A Response regulator aspa 49.8 67 0.0023 22.8 10.1 77 8-92 166-255 (383)
163 1hz4_A MALT regulatory protein 48.9 66 0.0023 22.5 9.1 70 9-83 77-155 (373)
164 1ouv_A Conserved hypothetical 48.3 33 0.0011 23.1 4.9 30 19-48 4-33 (273)
165 2qfc_A PLCR protein; TPR, HTH, 48.1 65 0.0022 22.2 9.1 77 4-88 127-223 (293)
166 1ihg_A Cyclophilin 40; ppiase 47.8 22 0.00074 26.6 4.2 71 3-83 284-361 (370)
167 3mkq_B Coatomer subunit alpha; 47.4 20 0.00068 25.4 3.7 29 24-52 79-107 (177)
168 3q15_A PSP28, response regulat 47.3 74 0.0025 22.7 8.4 74 9-87 206-287 (378)
169 2yhc_A BAMD, UPF0169 lipoprote 47.1 59 0.002 21.5 6.7 57 19-83 2-61 (225)
170 1qqe_A Vesicular transport pro 44.5 76 0.0026 22.0 7.1 58 22-87 118-184 (292)
171 2h6f_A Protein farnesyltransfe 44.4 64 0.0022 24.3 6.4 43 5-47 110-158 (382)
172 2crb_A Nuclear receptor bindin 42.8 9.3 0.00032 25.1 1.2 17 66-82 18-34 (97)
173 2ond_A Cleavage stimulation fa 41.2 82 0.0028 21.9 6.2 41 9-49 81-127 (308)
174 3qwp_A SET and MYND domain-con 40.1 1.3E+02 0.0043 23.2 10.2 83 4-91 299-401 (429)
175 2ond_A Cleavage stimulation fa 39.9 92 0.0032 21.6 7.4 45 5-49 112-162 (308)
176 2h6f_A Protein farnesyltransfe 39.5 1.2E+02 0.0041 22.8 7.6 72 4-87 143-226 (382)
177 2pm7_A Protein WEB1, protein t 37.2 38 0.0013 26.6 4.2 82 5-86 226-360 (399)
178 1qqe_A Vesicular transport pro 37.2 1E+02 0.0035 21.3 7.1 54 22-83 159-219 (292)
179 4b4t_P 26S proteasome regulato 35.5 1.4E+02 0.0047 23.1 7.2 78 3-87 148-244 (445)
180 4b4t_Q 26S proteasome regulato 34.5 1E+02 0.0036 21.8 6.0 73 3-83 146-236 (434)
181 2kgf_A Capsid protein P27; ret 34.1 11 0.00036 26.2 0.5 26 16-41 50-75 (140)
182 2v4x_A JSRV capsid, capsid pro 33.0 15 0.00051 25.5 1.1 30 15-44 44-73 (140)
183 2yhc_A BAMD, UPF0169 lipoprote 32.8 1.1E+02 0.0036 20.2 5.5 45 3-47 15-67 (225)
184 3ly7_A Transcriptional activat 31.9 1.2E+02 0.004 23.7 6.2 54 19-83 275-330 (372)
185 4gns_B Protein CSD3, chitin bi 31.0 48 0.0016 28.3 4.1 32 19-50 611-642 (754)
186 4g1t_A Interferon-induced prot 27.6 1.3E+02 0.0043 21.7 5.5 64 21-89 51-122 (472)
187 2ooe_A Cleavage stimulation fa 22.6 1.3E+02 0.0043 22.7 4.8 44 5-48 25-73 (530)
188 1wmg_A Netrin receptor UNC5H2; 22.5 58 0.002 20.6 2.5 58 21-83 31-91 (103)
189 2p58_C Putative type III secre 21.5 1.8E+02 0.0061 19.5 4.7 40 2-41 50-89 (116)
190 1wlq_A Geminin; coiled-coil; 2 20.5 43 0.0015 21.3 1.4 27 9-35 6-33 (83)
191 2zxx_A Geminin; coiled-coil, c 20.3 37 0.0012 21.4 1.1 22 10-31 3-25 (79)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.28 E-value=9.3e-12 Score=99.38 Aligned_cols=81 Identities=26% Similarity=0.318 Sum_probs=64.8
Q ss_pred ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccch
Q psy8677 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTA 82 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EA 82 (99)
|+-+.|++|+++++...++..|+.||..||..+++++|++||.+++|++++.+|..+....+.....|+++...|+++.|
T Consensus 663 l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A 742 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLA 742 (814)
T ss_dssp HHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHH
Confidence 56789999999999999999999999999999999999999999999999999988754444333444444444444433
Q ss_pred h
Q psy8677 83 V 83 (99)
Q Consensus 83 e 83 (99)
+
T Consensus 743 ~ 743 (814)
T 3mkq_A 743 F 743 (814)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=99.19 E-value=6.6e-11 Score=86.25 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=61.4
Q ss_pred ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
|+-|.++.|+++|+...++..|+.||..||..+|+++|+.||.+++|+.++.|+..+-.-.+.-..+|+++.-.|+
T Consensus 16 L~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~ 91 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTRED 91 (177)
T ss_dssp HHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCcc
Confidence 6789999999999999999999999999999999999999999999999999996664333322334444433333
No 3
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.55 E-value=8.4e-09 Score=83.94 Aligned_cols=75 Identities=21% Similarity=0.449 Sum_probs=0.0
Q ss_pred cccccC-HHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCcc
Q psy8677 2 YLKNVG-LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQ 80 (99)
Q Consensus 2 ~le~~~-~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~ 80 (99)
+|++.+ +++|++|+...+||..|..||...+..+++.-|..||+++.|+.+++.|.+ .| .-+|+|+
T Consensus 12 ll~~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~----------~a---e~~g~~E 78 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQ----------AA---NTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHH----------HH---HhCCCHH
Confidence 566666 999999999999999999999999999999999999999999999888865 22 2389999
Q ss_pred chh-hHhHHH
Q psy8677 81 TAV-YCDIIE 89 (99)
Q Consensus 81 EAe-Y~~i~~ 89 (99)
||. |.++++
T Consensus 79 eAi~yl~~ar 88 (449)
T 1b89_A 79 ELVKYLQMAR 88 (449)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 999 777665
No 4
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.30 E-value=0.083 Score=33.57 Aligned_cols=76 Identities=13% Similarity=0.026 Sum_probs=57.6
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|..+.. ..| ++..|..||..-...++++-|..+|-+.-... -+-+..-...|.++...|
T Consensus 29 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--------INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTT
T ss_pred HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHcC
Confidence 46788999987665 455 68899999999999999999999998753221 111223357899999999
Q ss_pred Cccchh--hHh
Q psy8677 78 RFQTAV--YCD 86 (99)
Q Consensus 78 kf~EAe--Y~~ 86 (99)
++++|. |.+
T Consensus 101 ~~~~A~~~~~~ 111 (142)
T 2xcb_A 101 DLDGAESGFYS 111 (142)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 999998 544
No 5
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.24 E-value=0.082 Score=34.47 Aligned_cols=76 Identities=11% Similarity=-0.005 Sum_probs=57.4
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|..... ..| ++..|..||......++++-|..+|-+.-... -+-+..-...|.++...|
T Consensus 32 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 32 YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--------IXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCchHHHHHHHHHHHcC
Confidence 46788999987654 455 68899999999999999999999998753221 111223357899999999
Q ss_pred Cccchh--hHh
Q psy8677 78 RFQTAV--YCD 86 (99)
Q Consensus 78 kf~EAe--Y~~ 86 (99)
++++|. |.+
T Consensus 104 ~~~~A~~~~~~ 114 (148)
T 2vgx_A 104 ELAEAESGLFL 114 (148)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 999999 544
No 6
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.09 E-value=0.37 Score=31.03 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=59.0
Q ss_pred cccccCHHHHHH---HHHhCC--ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCH------HHHHH
Q psy8677 2 YLKNVGLNEAFQ---FVEAHP--HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDD------IMKHA 70 (99)
Q Consensus 2 ~le~~~~~eA~~---~~~~~~--h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~------~~~~A 70 (99)
.+..+.+++|.+ .+...| ....|..+|......++++-|...|.+.-+ ..+...++ -...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ--------QAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHTTCCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--------HHHHcCCcHHHHHHHHHHH
Confidence 467899999999 877766 467899999999999999999988876532 22233221 23688
Q ss_pred HHHHHcCCccchh--hHhHHHHHhh
Q psy8677 71 YIAQHQGRFQTAV--YCDIIEYLRR 93 (99)
Q Consensus 71 ei~ay~gkf~EAe--Y~~i~~~~~~ 93 (99)
.++...|++++|. |.+.-...++
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~ 98 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLAS 98 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999 6665555443
No 7
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=94.31 E-value=0.35 Score=32.25 Aligned_cols=77 Identities=9% Similarity=-0.104 Sum_probs=58.4
Q ss_pred ccccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
...+.+++|..+. ...| ++.-|..||..-...++++-|..+|-+.-..+ -+-+..-...|.++.-.|
T Consensus 47 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--------P~~~~~~~~lg~~~~~lg 118 (151)
T 3gyz_A 47 YNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--------KNDYTPVFHTGQCQLRLK 118 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SSCCHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcC
Confidence 4578888888765 4455 58999999999999999999999997762221 112233457899999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
++++|. |.+.
T Consensus 119 ~~~eA~~~~~~a 130 (151)
T 3gyz_A 119 APLKAKECFELV 130 (151)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999 6554
No 8
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.11 E-value=0.32 Score=29.25 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=53.3
Q ss_pred ccccCHHHHHHHHH----hCCC-h---HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC---CCHHHHHHH
Q psy8677 3 LKNVGLNEAFQFVE----AHPH-P---RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL---PDDIMKHAY 71 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~h-~---~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l---~~~~~~~Ae 71 (99)
+..+.+++|..... ..|+ + ..|-.+|......++++-|...|-++-+.. .+- +.--...|.
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 13 LKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--------PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTSTTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--------CCCcccHHHHHHHHH
Confidence 46788899987655 3554 3 589999999999999999998887652211 111 112357899
Q ss_pred HHHHcCCccchh
Q psy8677 72 IAQHQGRFQTAV 83 (99)
Q Consensus 72 i~ay~gkf~EAe 83 (99)
++...|++++|.
T Consensus 85 ~~~~~g~~~~A~ 96 (129)
T 2xev_A 85 SQYGEGKNTEAQ 96 (129)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHcCCHHHHH
Confidence 999999999998
No 9
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=93.79 E-value=0.8 Score=29.39 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCC-Ch----HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH------HHHHHHHHHc
Q psy8677 8 LNEAFQFVEAHP-HP----RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI------MKHAYIAQHQ 76 (99)
Q Consensus 8 ~~eA~~~~~~~~-h~----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~------~~~Aei~ay~ 76 (99)
+++|+++++..+ .+ ..+..||......++++-|...|-+.-+ + .+..+++. ...|.++...
T Consensus 89 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~---~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 89 FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV-----Y---AQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----H---HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----H---HHhccchHHHHHHHHHHHHHHHHC
Confidence 345555555555 33 3477889999999999999988877522 1 22333322 4789999999
Q ss_pred CCccchh--hHhHHHHHhhhc
Q psy8677 77 GRFQTAV--YCDIIEYLRRRK 95 (99)
Q Consensus 77 gkf~EAe--Y~~i~~~~~~~~ 95 (99)
|++++|. |.+.-...++..
T Consensus 161 g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHHcC
Confidence 9999999 666655555443
No 10
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.25 Score=30.15 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=56.7
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|+.+.. ..| ++..|..+|..-+..++++-|...|-++-..+- +-+..-...|.++...|
T Consensus 15 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 15 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--------NFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHHh
Confidence 45788888887654 355 578999999999999999999988877532210 11123357899999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
++++|. |.+.
T Consensus 87 ~~~~A~~~~~~a 98 (126)
T 3upv_A 87 EYASALETLDAA 98 (126)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999 5443
No 11
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=93.50 E-value=0.23 Score=28.74 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=53.4
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|+.+... .| ++..|..+|.......+++-|...|-++-+... +-+.--...|.++...|
T Consensus 15 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--------DWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHHh
Confidence 456788888876553 44 688899999999999999999888776532210 11112246889999999
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
++++|.
T Consensus 87 ~~~~A~ 92 (118)
T 1elw_A 87 RFEEAK 92 (118)
T ss_dssp CHHHHH
T ss_pred hHHHHH
Confidence 999998
No 12
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=93.26 E-value=0.69 Score=27.02 Aligned_cols=73 Identities=15% Similarity=0.054 Sum_probs=52.9
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
...+.+++|+.+.. ..| ++..|..+|.......+++-|...|-++-... .+-+..-...|.++...|
T Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--------PAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--------ccCHHHHHHHHHHHHHhC
Confidence 35677888887654 344 57889999999999999999988887653221 011112357899999999
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
++++|.
T Consensus 95 ~~~~A~ 100 (131)
T 2vyi_A 95 KHVEAV 100 (131)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999998
No 13
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.16 E-value=0.3 Score=32.03 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=58.4
Q ss_pred ccccCHHHHHHHHHhC--CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCcc
Q psy8677 3 LKNVGLNEAFQFVEAH--PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQ 80 (99)
Q Consensus 3 le~~~~~eA~~~~~~~--~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~ 80 (99)
...+.+++|+...... +++..|..+|......++++-|...|-+.-... .+.+.--...|.++...|+++
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcccHH
Confidence 4578899999988764 467899999999999999999999887653221 111122347899999999999
Q ss_pred chh--hHhH
Q psy8677 81 TAV--YCDI 87 (99)
Q Consensus 81 EAe--Y~~i 87 (99)
+|. |.+.
T Consensus 89 ~A~~~~~~a 97 (213)
T 1hh8_A 89 LAIKDLKEA 97 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998 5544
No 14
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.06 E-value=0.51 Score=27.00 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=52.8
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHc-
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQ- 76 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~- 76 (99)
...+.+++|..+.. ..| ++..|..+|..-...++++-|...|-++-....- ..-..--...|.++...
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED------EYNKDVWAAKADALRYIE 90 (112)
T ss_dssp HSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC------TTCHHHHHHHHHHHTTCS
T ss_pred HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------cchHHHHHHHHHHHHHHh
Confidence 35678888887654 344 5788999999999999999999888765332110 00111224688999999
Q ss_pred CCccchh
Q psy8677 77 GRFQTAV 83 (99)
Q Consensus 77 gkf~EAe 83 (99)
|++++|.
T Consensus 91 ~~~~~A~ 97 (112)
T 2kck_A 91 GKEVEAE 97 (112)
T ss_dssp SCSHHHH
T ss_pred CCHHHHH
Confidence 9999998
No 15
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.01 E-value=0.4 Score=29.14 Aligned_cols=77 Identities=9% Similarity=-0.045 Sum_probs=54.7
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|+.+.. ..| ++..|..+|...+...+++-|...|-++-... .+-+..-...|.++...|
T Consensus 20 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~ 91 (137)
T 3q49_B 20 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSVKAHFFLGQCQLEME 91 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred HHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHHHh
Confidence 35677888876544 345 47889999999999999999988886653321 111122357899999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
++++|. |.+.
T Consensus 92 ~~~~A~~~~~~a 103 (137)
T 3q49_B 92 SYDEAIANLQRA 103 (137)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 999998 5443
No 16
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.84 E-value=0.37 Score=30.20 Aligned_cols=76 Identities=18% Similarity=0.050 Sum_probs=55.7
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|+...+ ..| ++..|..||......++++-|..+|-+.-..+- +-+.--...|.++...|
T Consensus 28 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------KDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcC
Confidence 56788888887654 445 688999999999999999999998876522210 00112246899999999
Q ss_pred Cccchh--hHh
Q psy8677 78 RFQTAV--YCD 86 (99)
Q Consensus 78 kf~EAe--Y~~ 86 (99)
++++|. |.+
T Consensus 100 ~~~~A~~~~~~ 110 (121)
T 1hxi_A 100 NANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 999998 544
No 17
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.58 E-value=0.42 Score=30.62 Aligned_cols=73 Identities=8% Similarity=-0.011 Sum_probs=54.0
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|+.+.. ..| ++..|..+|..-+...+++-|...|-+.-..+- +-..--...|.++...|
T Consensus 22 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 22 MARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--------KYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcc
Confidence 45678888877654 344 688999999999999999999988876532211 11112357899999999
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
++++|.
T Consensus 94 ~~~~A~ 99 (164)
T 3sz7_A 94 DYKGAK 99 (164)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999998
No 18
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=92.49 E-value=0.79 Score=26.52 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=52.7
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
...+.+++|..+... .| ++..|..+|.......+++-|...|-++-+.. ..-+..-...|.++...|
T Consensus 20 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhc
Confidence 346778888776543 33 57788999999999999999988887653211 000112246788999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
++++|. |.+.
T Consensus 92 ~~~~A~~~~~~~ 103 (125)
T 1na0_A 92 DYDEAIEYYQKA 103 (125)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999998 5443
No 19
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=92.38 E-value=0.79 Score=30.13 Aligned_cols=42 Identities=19% Similarity=0.078 Sum_probs=22.9
Q ss_pred ccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHH
Q psy8677 5 NVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVN 46 (99)
Q Consensus 5 ~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr 46 (99)
.+.+++|..+... .| ++..|..+|...+..++++-|...|-+
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4555555554432 22 455566666666666666666555544
No 20
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=92.11 E-value=1 Score=28.29 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=54.9
Q ss_pred ccccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
..++.+++|+... ...| ++..|..+|..-+..++++-|...|-++-.++. +-+..-...|.++.-.|
T Consensus 24 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 24 FKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--------KFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHCC
Confidence 4578888888654 3455 588999999999999999999888876522110 01112357899999999
Q ss_pred Cccchh--hHh
Q psy8677 78 RFQTAV--YCD 86 (99)
Q Consensus 78 kf~EAe--Y~~ 86 (99)
++++|. |.+
T Consensus 96 ~~~~A~~~~~~ 106 (126)
T 4gco_A 96 EWSKAQRAYED 106 (126)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 999999 554
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=91.82 E-value=0.43 Score=34.47 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=36.8
Q ss_pred ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
+..|.+++|++......++..|..+|..-+..++++-|.+.|-+.-
T Consensus 112 ~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4567888888888886778888888888888888888888877663
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.70 E-value=0.44 Score=44.26 Aligned_cols=49 Identities=22% Similarity=0.391 Sum_probs=45.1
Q ss_pred cccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc
Q psy8677 4 KNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG 52 (99)
Q Consensus 4 e~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~ 52 (99)
.-+.|++|++++..-..|..|..||..=+..++++-|-.||.+.+|.+.
T Consensus 1088 ~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~sa 1136 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSS 1136 (1630)
T ss_pred HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHH
Confidence 4578999999999989999999999999999999999999999987665
No 23
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.50 E-value=0.48 Score=28.13 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=51.8
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
...+.+++|+.+... .| ++..|..+|..-....+++-|...|-+.-.... +-+.--...|.++...|
T Consensus 27 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~~ 98 (133)
T 2lni_A 27 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--------TFIKGYTRKAAALEAMK 98 (133)
T ss_dssp HHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHHHh
Confidence 356778888876653 33 578899999988889999988888765533210 11112357899999999
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
++++|.
T Consensus 99 ~~~~A~ 104 (133)
T 2lni_A 99 DYTKAM 104 (133)
T ss_dssp CHHHHH
T ss_pred hHHHHH
Confidence 999998
No 24
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.46 E-value=1.4 Score=26.54 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=52.7
Q ss_pred ccccCHHHHHHHHH----hCCC----hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHH
Q psy8677 3 LKNVGLNEAFQFVE----AHPH----PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQ 74 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~h----~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~a 74 (99)
+..+.+++|+.+.. ..|. ...|..+|.......+++-|...|.+.-... .+-+.--...|.++.
T Consensus 39 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--------GGDVKALYRRSQALE 110 (148)
T ss_dssp HTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------SCCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------ccCHHHHHHHHHHHH
Confidence 45678888887765 3565 6789999999999999999988887643221 011112247899999
Q ss_pred HcCCccchh
Q psy8677 75 HQGRFQTAV 83 (99)
Q Consensus 75 y~gkf~EAe 83 (99)
..|++++|.
T Consensus 111 ~~~~~~~A~ 119 (148)
T 2dba_A 111 KLGRLDQAV 119 (148)
T ss_dssp HHTCHHHHH
T ss_pred HcCCHHHHH
Confidence 999999998
No 25
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=91.34 E-value=1.7 Score=29.05 Aligned_cols=72 Identities=13% Similarity=-0.004 Sum_probs=43.7
Q ss_pred cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
..+.+++|..+... .| ++..|..||......++++-|...|-+.-... .+.+.--...|.++...|+
T Consensus 55 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~ 126 (275)
T 1xnf_A 55 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNRGIALYYGGR 126 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------ccccHHHHHHHHHHHHhcc
Confidence 45666666665443 33 46777777777777777777777766542211 0111222456777777788
Q ss_pred ccchh
Q psy8677 79 FQTAV 83 (99)
Q Consensus 79 f~EAe 83 (99)
+++|.
T Consensus 127 ~~~A~ 131 (275)
T 1xnf_A 127 DKLAQ 131 (275)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87777
No 26
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=91.25 E-value=1 Score=27.81 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCccchh
Q psy8677 68 KHAYIAQHQGRFQTAV 83 (99)
Q Consensus 68 ~~Aei~ay~gkf~EAe 83 (99)
..|.++...|++++|.
T Consensus 149 ~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 149 AIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHH
Confidence 5666667777777776
No 27
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=91.21 E-value=0.75 Score=29.66 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=10.6
Q ss_pred HHHHHHHHcCCccchh
Q psy8677 68 KHAYIAQHQGRFQTAV 83 (99)
Q Consensus 68 ~~Aei~ay~gkf~EAe 83 (99)
..|.++...|++++|.
T Consensus 152 ~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 152 ELARTKMLAGQLGDAD 167 (225)
T ss_dssp HHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHcCCHHHHH
Confidence 4566666667777666
No 28
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=91.19 E-value=0.82 Score=28.25 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=45.4
Q ss_pred cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
..+.+++|+.+.. ..| ++..|..+|......++++-|...|-+.-.... +.+.--...|.++...|+
T Consensus 25 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--------KYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTC
T ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHhcc
Confidence 4567777776554 334 577788888888888888888877765432210 001122356667777777
Q ss_pred ccchh
Q psy8677 79 FQTAV 83 (99)
Q Consensus 79 f~EAe 83 (99)
+++|.
T Consensus 97 ~~~A~ 101 (166)
T 1a17_A 97 FRAAL 101 (166)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
No 29
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=91.18 E-value=1.6 Score=28.36 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=58.7
Q ss_pred ccccCHHHHHHHHHhCC-----ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc----------h------------HH
Q psy8677 3 LKNVGLNEAFQFVEAHP-----HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG----------L------------QL 55 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~-----h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~----------v------------~~ 55 (99)
+..+.+++|....+... ++..|..||...+..++++-|..+|-++-...- + ..
T Consensus 17 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~ 96 (176)
T 2r5s_A 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKR 96 (176)
T ss_dssp HHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHH
Confidence 56788999999886532 577899999999999999999999877644321 1 11
Q ss_pred HHHhhCC-CC-HH--HHHHHHHHHcCCccchh--hHh
Q psy8677 56 IKSLRAL-PD-DI--MKHAYIAQHQGRFQTAV--YCD 86 (99)
Q Consensus 56 I~~l~~l-~~-~~--~~~Aei~ay~gkf~EAe--Y~~ 86 (99)
+++.-++ |+ .. ...|.++...|++++|. |.+
T Consensus 97 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 97 LEQELAANPDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 1111111 21 22 46889999999999998 554
No 30
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=91.01 E-value=0.45 Score=34.95 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=58.0
Q ss_pred ccccCHHHHHHHH----HhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 3 LKNVGLNEAFQFV----EAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 3 le~~~~~eA~~~~----~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
+..+.+++|+... ..+|++..|..+|..-+..++++-|...|-++-...- +-..--...|.++.-.|+
T Consensus 17 ~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--------DYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHHTTC
T ss_pred HHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--------HHHHHHHHHHHHHHHHhh
Confidence 4568888887754 4568899999999999999999999999876532110 011123578999999999
Q ss_pred ccchh--hHhH
Q psy8677 79 FQTAV--YCDI 87 (99)
Q Consensus 79 f~EAe--Y~~i 87 (99)
+++|. |.++
T Consensus 89 ~~~A~~~~~~~ 99 (514)
T 2gw1_A 89 FADAMFDLSVL 99 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998 6554
No 31
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=90.88 E-value=1.3 Score=25.64 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=26.4
Q ss_pred cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..+.+++|..+... +| ++..|..+|.......+++-|...|-+.
T Consensus 13 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 61 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61 (136)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34566666655432 22 4566667777777777777776666554
No 32
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=90.85 E-value=1.2 Score=31.74 Aligned_cols=73 Identities=11% Similarity=-0.003 Sum_probs=55.8
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
...+.+++|+.+.. ..| ++..|..+|...+..++++-|...|-+.-...-- -..--...|.++...|
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--------SVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--------CHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcC
Confidence 45688888887665 355 6889999999999999999999988876544210 0112247899999999
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
++++|.
T Consensus 87 ~~~~A~ 92 (281)
T 2c2l_A 87 SYDEAI 92 (281)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999999
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=90.84 E-value=1.1 Score=29.51 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=45.9
Q ss_pred cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
..+.+++|+.+.+. .| ++..|..+|..-...++++-|...|-++-+.. .+.+.--...|.++...|+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------PNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHhh
Confidence 45666777665443 33 46677788887777788887777776652110 0111122467888888999
Q ss_pred ccchh
Q psy8677 79 FQTAV 83 (99)
Q Consensus 79 f~EAe 83 (99)
+++|.
T Consensus 223 ~~~A~ 227 (258)
T 3uq3_A 223 YASAL 227 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=90.48 E-value=0.29 Score=39.62 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=48.5
Q ss_pred cccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 4 KNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 4 e~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
.-+.+++|++-++...++..|..+.......++|+.|..|...+. .-|+......+.+.-.|+|+||-
T Consensus 160 ~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------------~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 160 HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV------------VHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHH------------hCHhhHHHHHHHHHHCCCHHHHH
Confidence 346788888888888888888888888888888888876655422 11222233556777889999995
No 35
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=90.37 E-value=1 Score=31.04 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=56.8
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|+.+... .| ++..|..+|...+..++++-|...|-++-+.. .+.+.--...|.++...|
T Consensus 14 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 14 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--------MDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHcC
Confidence 467889999877653 44 58899999999999999999999887653221 011122357899999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
++++|. |.+.
T Consensus 86 ~~~~A~~~~~~~ 97 (359)
T 3ieg_A 86 KLDEAEDDFKKV 97 (359)
T ss_dssp CHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 999998 5443
No 36
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=90.22 E-value=2.2 Score=27.33 Aligned_cols=73 Identities=10% Similarity=0.030 Sum_probs=51.6
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
.+.+.+++|..+.+ .+| ++..|..||..-...++++-|..+|-++-+..- +-+.--...|.++.-.|
T Consensus 42 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 42 YEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP--------TQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcC
Confidence 35678888876544 455 588899999999999999999988876522110 01112246788999999
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
+++||.
T Consensus 114 ~~~~aa 119 (150)
T 4ga2_A 114 VTDGRA 119 (150)
T ss_dssp SSSSHH
T ss_pred ChHHHH
Confidence 999876
No 37
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=90.19 E-value=1.4 Score=31.98 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=54.6
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|+.+... .| ++..|..+|...+..++++-|...|-++-+.. .+...--...|.++...|
T Consensus 37 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 37 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcC
Confidence 456788888877653 33 57889999999999999999988887653221 011112246889999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
++++|. |.++
T Consensus 109 ~~~~A~~~~~~~ 120 (450)
T 2y4t_A 109 KLDEAEDDFKKV 120 (450)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999998 5544
No 38
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=90.18 E-value=0.95 Score=32.31 Aligned_cols=85 Identities=16% Similarity=0.195 Sum_probs=59.6
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc----------------------hHH
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG----------------------LQL 55 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~----------------------v~~ 55 (99)
+..+.+++|....+ ..| ++..|..||...+..++++-|...|-++-...- +..
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~ 207 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQ 207 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHH
Confidence 56788999987655 345 688999999999999999999999988744321 111
Q ss_pred HHHh-hCCCC-H--HHHHHHHHHHcCCccchh--hHhH
Q psy8677 56 IKSL-RALPD-D--IMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 56 I~~l-~~l~~-~--~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
+++. +.-|+ . -...|.++.-.|++++|. |.++
T Consensus 208 l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 208 LQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2221 11222 2 246889999999999998 5543
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=90.16 E-value=0.97 Score=32.56 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=45.5
Q ss_pred cccCHHHHHHHHHh------CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVEA------HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQ 76 (99)
Q Consensus 4 e~~~~~eA~~~~~~------~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~ 76 (99)
..+..++|++..+. .| ++..|-.+|...+..++++-|...|-+ .+ .+ .--...|.++.-.
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~--~~----------~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GD--SL----------ECMAMTVQILLKL 143 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CC--SH----------HHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CC--CH----------HHHHHHHHHHHHC
Confidence 34567888876653 24 577888889999999999999888877 11 11 1123456677777
Q ss_pred CCccchh
Q psy8677 77 GRFQTAV 83 (99)
Q Consensus 77 gkf~EAe 83 (99)
|++++|.
T Consensus 144 g~~~~A~ 150 (291)
T 3mkr_A 144 DRLDLAR 150 (291)
T ss_dssp TCHHHHH
T ss_pred CCHHHHH
Confidence 7777776
No 40
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=90.15 E-value=1.7 Score=29.65 Aligned_cols=77 Identities=19% Similarity=0.051 Sum_probs=56.2
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|..+.+. .| ++..|..+|......++++-|...|-+.-... .+-..--...|.++...|
T Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------cCCHHHHHHHHHHHHHcC
Confidence 456888999877654 34 57889999999999999999999888763321 011112246899999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
++++|. |.+.
T Consensus 104 ~~~~A~~~~~~~ 115 (327)
T 3cv0_A 104 NANAALASLRAW 115 (327)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999998 5554
No 41
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=90.00 E-value=0.67 Score=35.15 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=55.7
Q ss_pred ccccCHHHHHHHHHh----------CCC--hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCH--HHH
Q psy8677 3 LKNVGLNEAFQFVEA----------HPH--PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDD--IMK 68 (99)
Q Consensus 3 le~~~~~eA~~~~~~----------~~h--~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~--~~~ 68 (99)
...+.+++|..+.+. .|. ...|..||..-...++++-|...|-+.-+.. -++. -..
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------p~~~~~~~~ 555 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS----------TNDANVHTA 555 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------SCCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------CCChHHHHH
Confidence 356788888877654 344 5689999999999999999999887753221 1122 246
Q ss_pred HHHHHHHcCCccchh--hHhH
Q psy8677 69 HAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 69 ~Aei~ay~gkf~EAe--Y~~i 87 (99)
.|.++.-.|++++|. |.++
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 889999999999999 5544
No 42
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=89.99 E-value=1.8 Score=25.06 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=52.9
Q ss_pred cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
..+.+++|..+.+. +| ++..|..+|......++++-|...|-++-.. -..-+.--...|.++...|+
T Consensus 47 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~ 118 (136)
T 2fo7_A 47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGD 118 (136)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTC
T ss_pred HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHcc
Confidence 46788888887653 34 5778899999989999999888877654221 11111123468899999999
Q ss_pred ccchh--hHhH
Q psy8677 79 FQTAV--YCDI 87 (99)
Q Consensus 79 f~EAe--Y~~i 87 (99)
+++|. |.+.
T Consensus 119 ~~~A~~~~~~~ 129 (136)
T 2fo7_A 119 YDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998 5443
No 43
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=89.88 E-value=1.8 Score=25.16 Aligned_cols=76 Identities=9% Similarity=0.087 Sum_probs=53.2
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC----CCHHHHHHHHH
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL----PDDIMKHAYIA 73 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l----~~~~~~~Aei~ 73 (99)
...+.+++|+.+.. ..| ++..|..+|..-...++++-|...|-++-+... ..... ..--...|.++
T Consensus 15 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-----ENREDYRQIAKAYARIGNSY 89 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-----ccchhHHHHHHHHHHHHHHH
Confidence 35678888887654 344 578899999999999999999988877533210 00000 11224689999
Q ss_pred HHcCCccchh
Q psy8677 74 QHQGRFQTAV 83 (99)
Q Consensus 74 ay~gkf~EAe 83 (99)
...|++++|.
T Consensus 90 ~~~~~~~~A~ 99 (131)
T 1elr_A 90 FKEEKYKDAI 99 (131)
T ss_dssp HHTTCHHHHH
T ss_pred HHhccHHHHH
Confidence 9999999998
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=89.64 E-value=2.2 Score=28.31 Aligned_cols=17 Identities=18% Similarity=0.010 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCccchh
Q psy8677 67 MKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 67 ~~~Aei~ay~gkf~EAe 83 (99)
...+.++...|++++|.
T Consensus 213 ~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 213 LLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp HHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHccCHHHHH
Confidence 35666777777777777
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=89.59 E-value=2.2 Score=27.85 Aligned_cols=44 Identities=9% Similarity=0.048 Sum_probs=27.4
Q ss_pred cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..+.+++|..+.+. .| ++..|..+|..-...++++-|...|-++
T Consensus 69 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34566666655442 23 4666777777777777777777666554
No 46
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=89.57 E-value=2.1 Score=25.45 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh--hHhHHHH
Q psy8677 20 HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV--YCDIIEY 90 (99)
Q Consensus 20 h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe--Y~~i~~~ 90 (99)
++..|-.||...+..++++-|...|-++-... -+-+.--...|.++...|++++|. |.+.-..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999887763221 111223357899999999999999 6554433
No 47
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=89.55 E-value=1.9 Score=30.53 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=44.5
Q ss_pred cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
..+.+++|..+.+. .| ++..|..||..-...++++-|...|-+.-... .+.+.--...|.++.-.|+
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--------PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHCCC
Confidence 34566666655432 33 46667777777777777777766665532110 0001122467888888899
Q ss_pred ccchh--hHhH
Q psy8677 79 FQTAV--YCDI 87 (99)
Q Consensus 79 f~EAe--Y~~i 87 (99)
+++|. |.+.
T Consensus 297 ~~~A~~~~~~a 307 (365)
T 4eqf_A 297 YREAVSNFLTA 307 (365)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988 5443
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=89.09 E-value=2.3 Score=27.22 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=27.1
Q ss_pred cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..+.+++|..+.. ..| ++..|..+|..-...++++-|...|-++
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 68 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA 68 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4566666665543 233 3566777777777777777776666544
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=89.04 E-value=1.9 Score=28.28 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=55.7
Q ss_pred ccccCHHHHHHHHHh----CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC-------CCHHHHHHH
Q psy8677 3 LKNVGLNEAFQFVEA----HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL-------PDDIMKHAY 71 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l-------~~~~~~~Ae 71 (99)
+..+.+++|+.+... .+++..|..+|..-...++++-|...|.+.-+ .-.+. ..--...|.
T Consensus 16 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 16 YKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVE--------QGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--------hCcccccchHHHHHHHHHHHH
Confidence 356778888876543 26789999999999999999999999887422 11111 112247889
Q ss_pred HHHHcCCccchh--hHhH
Q psy8677 72 IAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 72 i~ay~gkf~EAe--Y~~i 87 (99)
++.-.|++++|. |.+.
T Consensus 88 ~~~~~~~~~~A~~~~~~a 105 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKS 105 (258)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHH
Confidence 999999999998 5443
No 50
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=89.02 E-value=2.3 Score=29.02 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCCccchh
Q psy8677 67 MKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 67 ~~~Aei~ay~gkf~EAe 83 (99)
...|.++...|++++|.
T Consensus 244 ~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhccHHHHH
Confidence 35677777778888777
No 51
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=88.99 E-value=2.7 Score=25.84 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=10.9
Q ss_pred HHHHHHHHcCCccchh
Q psy8677 68 KHAYIAQHQGRFQTAV 83 (99)
Q Consensus 68 ~~Aei~ay~gkf~EAe 83 (99)
..|.++...|++++|.
T Consensus 115 ~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 115 RLGVALDNLGRFDEAI 130 (186)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCcHHHHH
Confidence 4566666777777776
No 52
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=88.96 E-value=2.2 Score=29.12 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=25.3
Q ss_pred cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhcc-CHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLL-SLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~-~l~iAe~AFvr~ 47 (99)
..+.+++|+.++. ..| ++..|..+|......+ +++-|...|-+.
T Consensus 68 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 117 (330)
T 3hym_B 68 ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3455556655433 233 3566666666666666 666666666554
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=88.92 E-value=1.8 Score=28.84 Aligned_cols=46 Identities=11% Similarity=0.038 Sum_probs=28.2
Q ss_pred cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677 4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQD 49 (99)
Q Consensus 4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d 49 (99)
..+.+++|..+.. ..| ++..|..+|..-...++++-|...|-++-+
T Consensus 83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3456666665443 233 456677777777777777777777666543
No 54
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=88.83 E-value=1.4 Score=29.67 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=54.3
Q ss_pred cccccCHHHHHHHHHh----CCC-hHHHHH----------------HHHHHHhccCHHHHHHHHHHcCCccchHHHHHhh
Q psy8677 2 YLKNVGLNEAFQFVEA----HPH-PRLWKL----------------LADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLR 60 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~----~~h-~~lW~~----------------LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~ 60 (99)
+++.+.+++|+..... .|. +..|-. ||..-...++++-|..+|-+.-..+ -
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p 85 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--------P 85 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------C
Confidence 3567889999876544 443 556777 9999999999999998887642211 0
Q ss_pred CCCCHHHHHHHHHHHcCCccchh--hHhH
Q psy8677 61 ALPDDIMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 61 ~l~~~~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
+-+.--...|.++.-.|++++|. |.+.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00112246899999999999998 5543
No 55
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=88.78 E-value=1.6 Score=30.99 Aligned_cols=77 Identities=22% Similarity=0.239 Sum_probs=55.2
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|..+.+. .| ++..|..||......++++-|...|-+.-... .+...--...|.++...|
T Consensus 76 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 76 LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--------PNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHccc
Confidence 356778888877653 33 57889999999999999999999887763221 011112246889999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
++++|. |.+.
T Consensus 148 ~~~~A~~~~~~a 159 (365)
T 4eqf_A 148 HQQDACEALKNW 159 (365)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999999 5544
No 56
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=88.56 E-value=3 Score=28.40 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=45.6
Q ss_pred CHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCcc----------------------chHHHHHh
Q psy8677 7 GLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYA----------------------GLQLIKSL 59 (99)
Q Consensus 7 ~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~----------------------~v~~I~~l 59 (99)
.+++|..+... .| ++..|..+|..-...++++-|...|-+.-... .++++++.
T Consensus 106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56666655432 33 35567777777777777777666665542211 11222222
Q ss_pred hCC-CC---HHHHHHHHHHHcCCccchh--hHhHHH
Q psy8677 60 RAL-PD---DIMKHAYIAQHQGRFQTAV--YCDIIE 89 (99)
Q Consensus 60 ~~l-~~---~~~~~Aei~ay~gkf~EAe--Y~~i~~ 89 (99)
-++ |+ --...|.++...|++++|. |.+.-.
T Consensus 186 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 11 1236788888888888888 554443
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=88.44 E-value=2.3 Score=27.12 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=20.6
Q ss_pred ccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHH
Q psy8677 5 NVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVN 46 (99)
Q Consensus 5 ~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr 46 (99)
+|.+++|+...+ ..| ++.-|..||..-...++++-|...|.+
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~ 64 (184)
T 3vtx_A 18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKK 64 (184)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555544432 233 345555555555555555555544433
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=88.37 E-value=3.8 Score=27.08 Aligned_cols=70 Identities=7% Similarity=-0.096 Sum_probs=53.0
Q ss_pred ccccCHHHHHHHHH----hC--CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC---HHHHHHHHH
Q psy8677 3 LKNVGLNEAFQFVE----AH--PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIA 73 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~--~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~---~~~~~Aei~ 73 (99)
+..+.+++|+.+.. .. +++..|-.+|......++++-|...|-+.-. .-|+ --...|.++
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-----------KNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------TTCSHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-----------hCcchHHHHHHHHHHH
Confidence 45678888887654 34 5678888899999999999999888776532 1222 224789999
Q ss_pred HHcCCccchh
Q psy8677 74 QHQGRFQTAV 83 (99)
Q Consensus 74 ay~gkf~EAe 83 (99)
...|++++|.
T Consensus 87 ~~~~~~~~A~ 96 (228)
T 4i17_A 87 RDMKNNQEYI 96 (228)
T ss_dssp HHTTCHHHHH
T ss_pred HHcccHHHHH
Confidence 9999999998
No 59
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=88.35 E-value=0.79 Score=30.23 Aligned_cols=73 Identities=14% Similarity=-0.061 Sum_probs=51.8
Q ss_pred ccccCHHHHHHHHHhC----C-Ch----------------HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhC
Q psy8677 3 LKNVGLNEAFQFVEAH----P-HP----------------RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRA 61 (99)
Q Consensus 3 le~~~~~eA~~~~~~~----~-h~----------------~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~ 61 (99)
+..+.+++|+.+.... | ++ ..|..+|...+...+++-|...|-++-...- .
T Consensus 49 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~ 120 (198)
T 2fbn_A 49 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK--------N 120 (198)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------T
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------c
Confidence 3567888888765532 2 23 7899999999999999999888876543211 1
Q ss_pred CCCHHHHHHHHHHHcCCccchh
Q psy8677 62 LPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 62 l~~~~~~~Aei~ay~gkf~EAe 83 (99)
-+.--...|.++...|++++|.
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~ 142 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAK 142 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHH
Confidence 1112357899999999999998
No 60
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=87.84 E-value=1.2 Score=31.29 Aligned_cols=76 Identities=22% Similarity=0.242 Sum_probs=52.8
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|+.+... .| ++..|..||......++++-|...|.+.-... .+-+.--...|.++...|
T Consensus 75 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 75 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcC
Confidence 356778888776654 33 57788889998888999998888887653221 011112246888999999
Q ss_pred Cccchh--hHh
Q psy8677 78 RFQTAV--YCD 86 (99)
Q Consensus 78 kf~EAe--Y~~ 86 (99)
++++|. |.+
T Consensus 147 ~~~~A~~~~~~ 157 (368)
T 1fch_A 147 LQRQACEILRD 157 (368)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 999998 544
No 61
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=87.56 E-value=2.8 Score=29.98 Aligned_cols=84 Identities=20% Similarity=0.263 Sum_probs=46.7
Q ss_pred cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCc---------------------c-chHHH
Q psy8677 4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDY---------------------A-GLQLI 56 (99)
Q Consensus 4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~---------------------~-~v~~I 56 (99)
..+.+++|....+ .+| ++..|..||..-...++++-|...|-+.-.. + -+.+.
T Consensus 249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556666665543 234 3566777777777777777776666544211 0 11122
Q ss_pred HHhhCC-CC---HHHHHHHHHHHcCCccchh--hHhH
Q psy8677 57 KSLRAL-PD---DIMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 57 ~~l~~l-~~---~~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
++.-++ |+ .-...|.++.-.|++++|. |.+.
T Consensus 329 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222222 22 1235788888889999888 5543
No 62
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=87.56 E-value=0.74 Score=29.36 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
..|..+|..-+..++++-|...|-++-..+- +-+.--..+|.++...|+|++|.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p--------~~~~a~~~~g~~~~~~g~~~~A~ 117 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREE--------TNEKALFRRAKARIAAWKLDEAE 117 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHHhcHHHHH
Confidence 6788888888888888888877765422210 01112357999999999999998
No 63
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=87.43 E-value=1.3 Score=30.04 Aligned_cols=70 Identities=19% Similarity=0.111 Sum_probs=42.5
Q ss_pred ccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCc
Q psy8677 5 NVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRF 79 (99)
Q Consensus 5 ~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf 79 (99)
++.+++|+... ...| ++..|..||..-...++++-|..+|-+.-... + -+.--...|.++.-.|++
T Consensus 97 ~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~-------~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--D-------TPEIRSALAELYLSMGRL 167 (217)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C-------CHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--c-------chHHHHHHHHHHHHcCCH
Confidence 46677777544 3455 47778888888888888888888886652221 0 001112455556666666
Q ss_pred cchh
Q psy8677 80 QTAV 83 (99)
Q Consensus 80 ~EAe 83 (99)
+||.
T Consensus 168 ~~A~ 171 (217)
T 2pl2_A 168 DEAL 171 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 64
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=87.35 E-value=4.6 Score=26.60 Aligned_cols=83 Identities=16% Similarity=0.082 Sum_probs=55.3
Q ss_pred cccCHHHHHHHHHh----------CCC---hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH----
Q psy8677 4 KNVGLNEAFQFVEA----------HPH---PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI---- 66 (99)
Q Consensus 4 e~~~~~eA~~~~~~----------~~h---~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~---- 66 (99)
..+.+++|..+... ..+ ...|..||..-...++++-|...|.+.- ++.+.+..-+++.
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~ 129 (283)
T 3edt_B 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-----EIREKVLGKFHPDVAKQ 129 (283)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----HHHHHHHCTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----HHHHHHcCCCChHHHHH
Confidence 34566666655443 112 4568889999999999999999987753 2333332222222
Q ss_pred -HHHHHHHHHcCCccchh--hHhHHHHH
Q psy8677 67 -MKHAYIAQHQGRFQTAV--YCDIIEYL 91 (99)
Q Consensus 67 -~~~Aei~ay~gkf~EAe--Y~~i~~~~ 91 (99)
...|.++...|++++|. |.+.-...
T Consensus 130 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 130 LNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 46899999999999999 66555443
No 65
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=87.24 E-value=2 Score=33.48 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=54.0
Q ss_pred cccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHc
Q psy8677 2 YLKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQ 76 (99)
Q Consensus 2 ~le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~ 76 (99)
.+..+.+++|..... ..| +...|..+|..-+...+++-|...|-+.-..+- +-..--...|.++..+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--------KYIKGYYRRAASNMAL 87 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------TCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHc
Confidence 356788889887765 345 488999999999999999999988876533211 0011224678888889
Q ss_pred CCccchh
Q psy8677 77 GRFQTAV 83 (99)
Q Consensus 77 gkf~EAe 83 (99)
|++++|.
T Consensus 88 g~~~eA~ 94 (477)
T 1wao_1 88 GKFRAAL 94 (477)
T ss_dssp TCHHHHH
T ss_pred CCHHHHH
Confidence 9999998
No 66
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=87.12 E-value=1.5 Score=29.70 Aligned_cols=76 Identities=16% Similarity=0.031 Sum_probs=44.9
Q ss_pred ccccCHHHHHHHHHh----CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH--HHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVEA----HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI--MKHAYIAQHQ 76 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~--~~~Aei~ay~ 76 (99)
...+.+++|+...+. ..++..|..||..-...++++-|...|-+.-.. .-.+.. ...|.++.-.
T Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQ----------APKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHTC-
T ss_pred HHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHHc
Confidence 346777887766543 267899999999999999999999888765321 111222 4678899999
Q ss_pred CCccchh--hHhHH
Q psy8677 77 GRFQTAV--YCDII 88 (99)
Q Consensus 77 gkf~EAe--Y~~i~ 88 (99)
|++++|. |.++.
T Consensus 199 g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 199 GKAEEAARAAALEH 212 (217)
T ss_dssp --------------
T ss_pred cCHHHHHHHHHHHh
Confidence 9999998 76654
No 67
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=86.67 E-value=1.4 Score=29.57 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=34.3
Q ss_pred ccccCHHHHHHHHHh----CCC-hHHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677 3 LKNVGLNEAFQFVEA----HPH-PRLWKLLADKSLDLLSLNHAEQALVNCQD 49 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~d 49 (99)
+..+.+++|+.+... .|. +..|..+|..-...++++-|...|-++-+
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 65 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 456778888876653 443 55888888888888888888888776633
No 68
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=86.34 E-value=3.1 Score=28.52 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=53.7
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
...+.+++|+.+... .| ++..|..+|..-+..++++-|...|-++-.... +.+.--...|.++...|
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS--------DNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS--------CCHHHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcC
Confidence 356778888877654 34 578899999999999999999888876533210 01122357899999999
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
++++|.
T Consensus 203 ~~~~A~ 208 (359)
T 3ieg_A 203 DHELSL 208 (359)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999998
No 69
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=86.29 E-value=3.7 Score=24.44 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC---CHHHHHHHHHHHcCCccchh--hHhHHHHH
Q psy8677 22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAV--YCDIIEYL 91 (99)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~---~~~~~~Aei~ay~gkf~EAe--Y~~i~~~~ 91 (99)
..|..+|......++++-|...|.+.- ++.......+ .--...|.++...|++++|. |.+.-...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL-----AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 457778888888889998888886642 2222221111 11246788999999999998 55544433
No 70
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=86.07 E-value=1.8 Score=28.71 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=53.5
Q ss_pred HHHHHHHHHhC---C---ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC-----HHHHHHHHHHHc
Q psy8677 8 LNEAFQFVEAH---P---HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD-----DIMKHAYIAQHQ 76 (99)
Q Consensus 8 ~~eA~~~~~~~---~---h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~-----~~~~~Aei~ay~ 76 (99)
+++|++.+... . ....|..||..-...++++-|...|-++- ++.+.+-.-++ --...|.++...
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-----AIREKTLGKDHPAVAATLNNLAVLYGKR 98 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-----HHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 56677766532 1 25668899999999999999999987763 33333311111 224689999999
Q ss_pred CCccchh--hHhHHHHH
Q psy8677 77 GRFQTAV--YCDIIEYL 91 (99)
Q Consensus 77 gkf~EAe--Y~~i~~~~ 91 (99)
|++++|. |.+.-...
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (283)
T 3edt_B 99 GKYKEAEPLCKRALEIR 115 (283)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 9999999 66554443
No 71
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=85.12 E-value=4.1 Score=29.12 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=25.0
Q ss_pred cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHH
Q psy8677 4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALV 45 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFv 45 (99)
..|.+++|.+.+.. .| ++..|..||...+..++++-|...|.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 57 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST 57 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45667777665432 33 35566666666666666666665543
No 72
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=85.00 E-value=5.9 Score=25.60 Aligned_cols=81 Identities=7% Similarity=-0.077 Sum_probs=53.9
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc----hHHHHHhhCC-C---CHHHHH
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG----LQLIKSLRAL-P---DDIMKH 69 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~----v~~I~~l~~l-~---~~~~~~ 69 (99)
...+.+++|+.+... .| ++..|..+|..-...++++-|...|-++-+... +.+-..-... + .--...
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 48 TILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence 356788888876643 33 578899999999999999999998877533110 0000000000 0 123578
Q ss_pred HHHHHHcCCccchh
Q psy8677 70 AYIAQHQGRFQTAV 83 (99)
Q Consensus 70 Aei~ay~gkf~EAe 83 (99)
|.++...|++++|.
T Consensus 128 ~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 128 AFMYAKKEEWKKAE 141 (213)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHccCHHHHH
Confidence 99999999999998
No 73
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=84.97 E-value=3.7 Score=31.01 Aligned_cols=74 Identities=16% Similarity=-0.062 Sum_probs=54.9
Q ss_pred ccccCHHHHHHHHH----hCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 3 LKNVGLNEAFQFVE----AHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
+..+.+++|..+.+ ..|++..|..||......++++-|...|.+....+. -+.--...|.++.-.|+
T Consensus 95 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNR---------SSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGT---------CHHHHHHHHHHHHHTTC
T ss_pred HHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHhh
Confidence 45678888887654 467788899999999999999999999887643211 01122467888889999
Q ss_pred ccchh--hH
Q psy8677 79 FQTAV--YC 85 (99)
Q Consensus 79 f~EAe--Y~ 85 (99)
+++|. |.
T Consensus 166 ~~~A~~~~~ 174 (597)
T 2xpi_A 166 WQGALNLLG 174 (597)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 99998 54
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=84.88 E-value=6.8 Score=26.24 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=56.7
Q ss_pred ccccCHHHHHHHHHh----CCCh-----HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC---HHHHHH
Q psy8677 3 LKNVGLNEAFQFVEA----HPHP-----RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD---DIMKHA 70 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~h~-----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~---~~~~~A 70 (99)
+..+.+++|..+.+. .|.+ ..|..+|......++++-|...|-+.-+ +.....+-+. --...|
T Consensus 16 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-----LARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HhhcccccHHHHHHHHHHH
Confidence 356778888877654 4543 6788999999999999999988876432 2222221111 124688
Q ss_pred HHHHHcCCccchh--hHhHHHHH
Q psy8677 71 YIAQHQGRFQTAV--YCDIIEYL 91 (99)
Q Consensus 71 ei~ay~gkf~EAe--Y~~i~~~~ 91 (99)
.++...|++++|. |.+.-...
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~ 113 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDIS 113 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHH
Confidence 9999999999999 65544443
No 75
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=84.29 E-value=7.4 Score=27.28 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=56.7
Q ss_pred ccccCHHHHHHHHH----hCCCh-----HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC---HHHHHH
Q psy8677 3 LKNVGLNEAFQFVE----AHPHP-----RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD---DIMKHA 70 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~h~-----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~---~~~~~A 70 (99)
+..+.+++|+.+.+ ..|.+ ..|..||......++++-|...|-+.- ++...+.+-+. --...|
T Consensus 20 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-----TLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHhccccHHHHHHHHHHH
Confidence 35677888887764 34543 578899999999999999998887642 22222211111 124689
Q ss_pred HHHHHcCCccchh--hHhHHHHH
Q psy8677 71 YIAQHQGRFQTAV--YCDIIEYL 91 (99)
Q Consensus 71 ei~ay~gkf~EAe--Y~~i~~~~ 91 (99)
.++...|++++|. |.+.-...
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~ 117 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDIS 117 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999 55544433
No 76
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=84.24 E-value=5.1 Score=29.62 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=27.6
Q ss_pred cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..+.+++|..+... .| ++..|..+|......++++-|...|-++
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45566666655432 33 4666777777777777777777766554
No 77
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=83.69 E-value=3.6 Score=26.18 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 18 HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 18 ~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
|.++..|-.||..-...++++-|..+|-++-+.+- +-+.--...|.++...|++++|.
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~a~ 59 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--------NNVETLLKLGKTYMDIGLPNDAI 59 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHH
Confidence 56789999999999999999999999987622110 00011235677777777777776
No 78
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=83.68 E-value=9 Score=26.67 Aligned_cols=17 Identities=6% Similarity=-0.138 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCccchh
Q psy8677 67 MKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 67 ~~~Aei~ay~gkf~EAe 83 (99)
...|.++...|++++|.
T Consensus 334 ~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 334 STLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCChHhHH
Confidence 36788999999999999
No 79
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=83.67 E-value=5 Score=23.75 Aligned_cols=65 Identities=14% Similarity=-0.026 Sum_probs=46.8
Q ss_pred HHhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh--hHhH
Q psy8677 15 VEAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 15 ~~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
+...| ++..|..||...+..++++-|...|-+.-.... +....-...|.++...|++++|. |.+.
T Consensus 12 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 12 LAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--------TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455 588999999999999999999998876532211 11112246899999999999998 5443
No 80
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=82.95 E-value=3.6 Score=26.18 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=27.9
Q ss_pred ccccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
+..+.+++|+.+. ...| ++..|..+|...+..++++-|..+|-+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 70 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555443 3344 5678888888888888888888777654
No 81
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=82.91 E-value=2.7 Score=23.29 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
+..|..+|.......+++-|...|-+.-+... +-+.--...|.++...|++++|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~ 63 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------NNAEAWYNLGNAYYKQGDYDEAI 63 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHhhHHHHH
Confidence 56789999999999999999999876533210 01112247899999999999998
No 82
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=82.22 E-value=2.2 Score=32.13 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
...|..||...+...+++-|...|-++-+.+- +-..--..+|.++...|++++|.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~eA~ 327 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--------SNTKALYRRAQGWQGLKEYDQAL 327 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHHccCHHHHH
Confidence 57788899999999999988888766544321 01112247899999999999998
No 83
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=81.94 E-value=2.6 Score=28.11 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=53.4
Q ss_pred cccCHHHHHHHHHhCC---------ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHH
Q psy8677 4 KNVGLNEAFQFVEAHP---------HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQ 74 (99)
Q Consensus 4 e~~~~~eA~~~~~~~~---------h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~a 74 (99)
..+.+++|+.+..... ++..|..+|......++++-|...|-+.-+... +.+.--...|.++.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--------DMPEVFNYLGIYLT 88 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHH
Confidence 4567788877665322 367799999999999999999998876533210 11112246899999
Q ss_pred HcCCccchh--hHhH
Q psy8677 75 HQGRFQTAV--YCDI 87 (99)
Q Consensus 75 y~gkf~EAe--Y~~i 87 (99)
..|++++|. |.+.
T Consensus 89 ~~~~~~~A~~~~~~a 103 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSV 103 (275)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHH
Confidence 999999999 5443
No 84
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=81.60 E-value=3.8 Score=22.65 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=36.2
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
...+.+++|..+.+. .| ++..|..+|..-....+++-|...|-+.-
T Consensus 20 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356788888876543 34 57889999999999999999998887653
No 85
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=81.42 E-value=11 Score=26.05 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC-CCH--H-----HHHHHHHHHcCCccchh--hHhHHHHH
Q psy8677 23 LWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL-PDD--I-----MKHAYIAQHQGRFQTAV--YCDIIEYL 91 (99)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l-~~~--~-----~~~Aei~ay~gkf~EAe--Y~~i~~~~ 91 (99)
.|..+|.....-++++-|..+|-+.=+ +.++--++ |+. . ..+|..+.-.|+++||. |.+.-.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~-----l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH-----YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-----hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999987733 33333333 332 2 47899999999999999 77665544
No 86
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=81.30 E-value=4 Score=27.52 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=54.2
Q ss_pred cccCHHHHHHHHHhC------------C-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC-----H
Q psy8677 4 KNVGLNEAFQFVEAH------------P-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD-----D 65 (99)
Q Consensus 4 e~~~~~eA~~~~~~~------------~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~-----~ 65 (99)
..+.+++|..+.... + ....|..||......++++-|...|-+.- ++......-++ -
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~ 113 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL-----AIREKTLGKDHPAVAAT 113 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHCTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHhCCCChHHHHH
Confidence 456677777665432 1 24568889999999999999999887652 23333211111 2
Q ss_pred HHHHHHHHHHcCCccchh--hHhHHHH
Q psy8677 66 IMKHAYIAQHQGRFQTAV--YCDIIEY 90 (99)
Q Consensus 66 ~~~~Aei~ay~gkf~EAe--Y~~i~~~ 90 (99)
-...|.++...|++++|. |.+.-..
T Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 114 LNNLAVLYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 246899999999999999 5554433
No 87
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=81.27 E-value=6.5 Score=23.45 Aligned_cols=57 Identities=9% Similarity=-0.059 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 19 PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 19 ~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
.++..|..+|...+..++++-|...|-++-.... +.+.--...|.++...|++++|.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~l~~~~~~~~~~~~A~ 63 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--------LVAVYYTNRALCYLKMQQPEQAL 63 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--------CcHHHHHHHHHHHHHhcCHHHHH
Confidence 4578999999999999999999999877533211 11112246899999999999998
No 88
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=81.26 E-value=12 Score=27.29 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=34.6
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
...+.+++|..+... .| ++..|..+|......++++-|...|-++
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456778888776643 33 5788899999999999999888888665
No 89
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=81.25 E-value=7.1 Score=25.73 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=54.1
Q ss_pred cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCcc--chHHHHHhhCCCCHHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYA--GLQLIKSLRALPDDIMKHAYIAQHQ 76 (99)
Q Consensus 4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~--~v~~I~~l~~l~~~~~~~Aei~ay~ 76 (99)
..+.+++|+.+.. ..| ++..|..+|..-...++++-|...|-++-... ...+...+ ..--...|.++.-.
T Consensus 54 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~---~~~~~~~g~~~~~~ 130 (228)
T 4i17_A 54 NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY---AIYYLKEGQKFQQA 130 (228)
T ss_dssp HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH---HHHHHHHHHHHHHT
T ss_pred HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH---HHHHHHHhHHHHHh
Confidence 4677888887654 345 46789999999999999999998887653211 01110000 01134688889999
Q ss_pred CCccchh--hHh
Q psy8677 77 GRFQTAV--YCD 86 (99)
Q Consensus 77 gkf~EAe--Y~~ 86 (99)
|++++|. |.+
T Consensus 131 ~~~~~A~~~~~~ 142 (228)
T 4i17_A 131 GNIEKAEENYKH 142 (228)
T ss_dssp TCHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 9999998 544
No 90
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=80.91 E-value=6.3 Score=22.96 Aligned_cols=46 Identities=13% Similarity=0.051 Sum_probs=36.8
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
...+.+++|..+... .| ++..|..+|.......+++-|...|.++-
T Consensus 61 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 61 TKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456788888876643 34 57899999999999999999999887653
No 91
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=80.79 E-value=4.8 Score=23.02 Aligned_cols=27 Identities=7% Similarity=-0.183 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
...|..+|......++++-|...|-+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~a 30 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQL 30 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555666666666666666555443
No 92
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=80.72 E-value=2.1 Score=31.45 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 23 LWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
.|..||..-+...+++-|...|-+.-..+- +-..--..+|.++...|++++|.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~a~~~~g~~~~A~ 284 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE--------KNPKALFRRGKAKAELGQMDSAR 284 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHH
Confidence 788888888888888888877765422110 01112357899999999999998
No 93
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=80.58 E-value=8.6 Score=24.31 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=48.8
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHH-HHhccCH--HHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHH
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADK-SLDLLSL--NHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQ 74 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~-AL~~~~l--~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~a 74 (99)
+..+.+++|..+... .| ++..|..+|.. .....++ +-|...|-+.-... .+-+.--...|.++.
T Consensus 55 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~ 126 (177)
T 2e2e_A 55 LWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAF 126 (177)
T ss_dssp HHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH
Confidence 356778888776543 33 67888889988 6677777 88877765442211 000112246889999
Q ss_pred HcCCccchh
Q psy8677 75 HQGRFQTAV 83 (99)
Q Consensus 75 y~gkf~EAe 83 (99)
..|++++|.
T Consensus 127 ~~g~~~~A~ 135 (177)
T 2e2e_A 127 MQANYAQAI 135 (177)
T ss_dssp HTTCHHHHH
T ss_pred HcccHHHHH
Confidence 999999998
No 94
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=80.23 E-value=3.9 Score=31.37 Aligned_cols=73 Identities=7% Similarity=0.006 Sum_probs=45.7
Q ss_pred ccccCHHHHHHHHHh-----CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA-----HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~-----~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|+..+.. ..++..|-.+|..-+...+++-|...|-+.-...- +-..--...+.+....|
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--------~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--------QNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHH
Confidence 456778888877654 33577788888888888888888888877644321 00112234555555556
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
++++|+
T Consensus 400 ~~~~a~ 405 (457)
T 1kt0_A 400 EHNERD 405 (457)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 95
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=80.19 E-value=3.7 Score=23.49 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=36.4
Q ss_pred ccccCHHHHHHHHH----hCC-ChH-HHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPR-LWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~-lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
+..+.+++|+.... ..| ++. .|..+|..-...++++-|..+|-++
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678888887664 455 456 8999999999999999999998775
No 96
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=79.94 E-value=7.7 Score=28.31 Aligned_cols=44 Identities=16% Similarity=-0.037 Sum_probs=33.9
Q ss_pred cccCHHHHHHHH----HhCCCh----------------HHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFV----EAHPHP----------------RLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~----~~~~h~----------------~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
..+.+++|+... ...|.. ..|..||..-+...+++-|..+|-+.
T Consensus 159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456777777654 345543 89999999999999999999888766
No 97
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=79.87 E-value=3.9 Score=32.31 Aligned_cols=47 Identities=19% Similarity=0.078 Sum_probs=37.6
Q ss_pred cCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc
Q psy8677 6 VGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG 52 (99)
Q Consensus 6 ~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~ 52 (99)
+.++.+..+......+..+..+|..|....+++.|+.+|..++|++.
T Consensus 708 ~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~ 754 (814)
T 3mkq_A 708 HDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQG 754 (814)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHH
T ss_pred cChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHH
Confidence 44555555555566677889999999999999999999999998875
No 98
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=79.85 E-value=2.2 Score=31.35 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=56.3
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+..+.+++|+..+.. .| ++..|-.+|..-+...+++-|...|-++-...- +-+.--...|.++...|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--------NNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------SCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHH
Confidence 456788888877653 34 578899999999999999999988876532210 01112246788888999
Q ss_pred Cccchh---hHhHHH
Q psy8677 78 RFQTAV---YCDIIE 89 (99)
Q Consensus 78 kf~EAe---Y~~i~~ 89 (99)
++++|+ |.++-.
T Consensus 279 ~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 279 RQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999997 666543
No 99
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=79.14 E-value=8.8 Score=29.39 Aligned_cols=72 Identities=14% Similarity=-0.002 Sum_probs=51.5
Q ss_pred cccCHHHHHHHHHh----CCC----------------hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC
Q psy8677 4 KNVGLNEAFQFVEA----HPH----------------PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP 63 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~h----------------~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~ 63 (99)
..+.+++|+..... .|+ ...|..+|..-+...+++-|..+|-++-..+- +-.
T Consensus 280 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~ 351 (457)
T 1kt0_A 280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS--------ANE 351 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCH
T ss_pred hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------ccH
Confidence 45677777765542 333 48899999999999999999988877633211 111
Q ss_pred CHHHHHHHHHHHcCCccchh
Q psy8677 64 DDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 64 ~~~~~~Aei~ay~gkf~EAe 83 (99)
..-..+|.++...|++++|.
T Consensus 352 ~a~~~~g~a~~~~g~~~~A~ 371 (457)
T 1kt0_A 352 KGLYRRGEAQLLMNEFESAK 371 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHH
Confidence 12357899999999999998
No 100
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=78.72 E-value=15 Score=26.07 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=57.1
Q ss_pred ccccCHHHHHHHHH----hCCCh-----HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC---CHHHHHH
Q psy8677 3 LKNVGLNEAFQFVE----AHPHP-----RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP---DDIMKHA 70 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~h~-----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~---~~~~~~A 70 (99)
+..+.+++|..+.+ ..|.. ..|..||..-...++++-|...|-+. +++.+.+.+-+ .--...|
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD-----LTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHHccCchHHHHHHHHHH
Confidence 35677888877654 34543 47889999999999999999988775 22222221111 1124789
Q ss_pred HHHHHcCCccchh--hHhHHHHH
Q psy8677 71 YIAQHQGRFQTAV--YCDIIEYL 91 (99)
Q Consensus 71 ei~ay~gkf~EAe--Y~~i~~~~ 91 (99)
.++...|++++|. |.+.-...
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999 66554443
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=78.27 E-value=6.5 Score=25.00 Aligned_cols=77 Identities=9% Similarity=0.002 Sum_probs=52.7
Q ss_pred ccccCHHHHHHHHHhCCC-----hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEAHPH-----PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h-----~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
..++.+++|+........ +.-|-.||..-...++++-|...|-++-...- +-+.--...|.++.-.|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--------RDPKAHRFLGLLYELEE 79 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcC
Confidence 456788888877655432 33456789889999999999988876522110 00112247899999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
++++|. |.+.
T Consensus 80 ~~~~A~~~~~~a 91 (150)
T 4ga2_A 80 NTDKAVECYRRS 91 (150)
T ss_dssp CHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 999999 5543
No 102
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=78.14 E-value=12 Score=24.76 Aligned_cols=45 Identities=13% Similarity=-0.032 Sum_probs=25.8
Q ss_pred cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
..+.+++|+.+... .| ++..|..+|..-...++++-|...|-+.-
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 34555566554432 23 35566666666666666666666665553
No 103
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=77.98 E-value=8.8 Score=22.92 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
+..|..||..-...++++-|...|-+.-... -+-+.--...|.++...|++++|.
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQF--------PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHcCCHHHHH
Confidence 5778999999999999999998887642210 011112246899999999999998
No 104
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=77.94 E-value=16 Score=25.94 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC------HHHHHHHHHHHcCCccchh
Q psy8677 22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD------DIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~------~~~~~Aei~ay~gkf~EAe 83 (99)
..|..+|...+..++++-|...|-+.-+. ... ..+ --...|.++...|++++|.
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRI-----ARE---FGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHH---HTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH-----HHh---cCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 47788888888999999888888764221 111 111 2235666667777777776
No 105
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=77.75 E-value=12 Score=27.65 Aligned_cols=77 Identities=18% Similarity=0.115 Sum_probs=55.8
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
...+.+++|..+.. ..| ++..|..+|..-...++++-|...|-+.-+. -.+-+.--...|.++...|
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhC
Confidence 34678888887764 344 4789999999999999999999888664321 1111223356799999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
++++|. |.+.
T Consensus 393 ~~~~A~~~~~~a 404 (537)
T 3fp2_A 393 DFDTAIKQYDIA 404 (537)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999 6554
No 106
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=77.73 E-value=7 Score=28.19 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=52.6
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
...+.+++|+.+... .| ++..|..||..-...++++-|...|-++-... ..-+.--...|.++...|
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC
Confidence 346778888877653 34 57788889988888888888887776542210 011112246889999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
++++|. |.++
T Consensus 226 ~~~~A~~~~~~~ 237 (450)
T 2y4t_A 226 DHELSLSEVREC 237 (450)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999998 5544
No 107
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=77.71 E-value=7.7 Score=29.57 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=40.7
Q ss_pred cccCHHHHHHHHHhC-------CChHHHHHHHHHHHhccCHHHHHHHHHHcCCcc
Q psy8677 4 KNVGLNEAFQFVEAH-------PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYA 51 (99)
Q Consensus 4 e~~~~~eA~~~~~~~-------~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~ 51 (99)
..+.+++|++.+..+ .+.....+++...|...+++.|++-|-+..+.+
T Consensus 112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~ 166 (310)
T 3mv2_B 112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI 166 (310)
T ss_dssp HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 358899999999988 578899999999999999999999996654433
No 108
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=77.66 E-value=5.2 Score=23.12 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
+.-|..+|......++++-|...|-++-+... .-+.--...|.++...|++++|.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~~~~~~A~ 58 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP--------TNMTYITNQAAVYFEKGDYNKCR 58 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHhccHHHHH
Confidence 56788999999999999999998877633210 11112246799999999999998
No 109
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=77.32 E-value=8.9 Score=22.66 Aligned_cols=65 Identities=9% Similarity=0.034 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC---CHHHHHHHHHHHcCCccchh--hHhHHHHH
Q psy8677 22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAV--YCDIIEYL 91 (99)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~---~~~~~~Aei~ay~gkf~EAe--Y~~i~~~~ 91 (99)
..|..+|......++++-|...|-+.-+ +.....+.+ .--...|.++...|++++|. |.+.-...
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLL-----LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3678899999999999999988876532 222221111 11246899999999999999 55544433
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=76.74 E-value=5.2 Score=30.91 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=10.6
Q ss_pred HHHHHHHHcCCccchh
Q psy8677 68 KHAYIAQHQGRFQTAV 83 (99)
Q Consensus 68 ~~Aei~ay~gkf~EAe 83 (99)
..|.++...|++++|.
T Consensus 96 ~la~~~~~~g~~~~A~ 111 (568)
T 2vsy_A 96 WLGHALEDAGQAEAAA 111 (568)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHH
Confidence 5666666667776666
No 111
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=76.47 E-value=8.1 Score=22.79 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=36.9
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
...+.+++|..+.+ ..| ++..|..||..-...++++-|..+|-+.-
T Consensus 30 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 30 AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678888887654 344 57889999999999999999999887763
No 112
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=76.32 E-value=7.4 Score=24.06 Aligned_cols=52 Identities=12% Similarity=0.046 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH--HHHHHHHHHcCCccchh
Q psy8677 22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI--MKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~--~~~Aei~ay~gkf~EAe 83 (99)
.-|+.||......++++-|...|-+.-+++ -.+.. ..+|.++...|+|++|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~----------p~~~~~~~nlg~~~~~~~~~~~A~ 62 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD----------PSNITFYNNKAAVYFEEKKFAECV 62 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------CCCHHHHHhHHHHHHHhhhHHHHH
Confidence 347889999999999999999998752211 11122 35899999999999998
No 113
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=76.31 E-value=4.1 Score=31.29 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=50.3
Q ss_pred cCHHHHHHHHHh----CC-ChHHHHHHHHHHHhc--------cCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHH
Q psy8677 6 VGLNEAFQFVEA----HP-HPRLWKLLADKSLDL--------LSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYI 72 (99)
Q Consensus 6 ~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~--------~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei 72 (99)
+.+++|....+. .| ++..|..||..-+.. .+++-|..+|-+.-...-- ..+.+.--...|.+
T Consensus 193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~ 267 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATL 267 (474)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHH
Confidence 778888877654 44 588999999999888 8899999888776433210 00111122467888
Q ss_pred HHHcCCccchh
Q psy8677 73 AQHQGRFQTAV 83 (99)
Q Consensus 73 ~ay~gkf~EAe 83 (99)
+...|++++|.
T Consensus 268 ~~~~g~~~~A~ 278 (474)
T 4abn_A 268 HKYEESYGEAL 278 (474)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHcCCHHHHH
Confidence 88888888887
No 114
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=76.09 E-value=15 Score=24.54 Aligned_cols=63 Identities=10% Similarity=-0.015 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC---CHHHHHHHHHHHcCCccchh--hHhHH
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAV--YCDII 88 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~---~~~~~~Aei~ay~gkf~EAe--Y~~i~ 88 (99)
...|..+|..-...++++-|...|-+.- +......+.+ .--...|.++...|++++|. |.+.-
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHL-----AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4466777888888888888877776542 1222221111 12236888899999999998 55443
No 115
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=76.01 E-value=9.7 Score=31.76 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHH
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVN 46 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr 46 (99)
..-|..||..-...++++-|..+|-+
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~k 102 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTR 102 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555554443
No 116
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=75.71 E-value=6.3 Score=23.26 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=36.7
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
+..+.+++|+...+ ..| .+..|..||..-...++++-|..+|-+.
T Consensus 18 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 18 LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45688888887654 445 4788999999999999999999998865
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=75.41 E-value=10 Score=22.51 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
...|..+|...+..++++-|...|.+.-... .+-+.--...|.++...|++++|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~ 58 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAI 58 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHH
Confidence 4578999999999999999999987652211 011112246899999999999998
No 118
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=75.12 E-value=9.2 Score=21.74 Aligned_cols=79 Identities=18% Similarity=0.097 Sum_probs=52.5
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
...+.+++|+.... ..| ++..|..+|..-+..++++-|...|-+.-....=.-.... ...--...|.++.-.|
T Consensus 15 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 15 FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI--RSKLQYRLELAQGAVG 92 (111)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH--HHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH--HHHHHHHHHHHHHHHH
Confidence 45678888887654 345 6889999999999999999999888776433210000000 0011246788888888
Q ss_pred Cccchh
Q psy8677 78 RFQTAV 83 (99)
Q Consensus 78 kf~EAe 83 (99)
++++|.
T Consensus 93 ~~~~a~ 98 (111)
T 2l6j_A 93 SVQIPV 98 (111)
T ss_dssp CCCCCS
T ss_pred hHhhhH
Confidence 888886
No 119
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=74.86 E-value=4.6 Score=37.69 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=35.7
Q ss_pred cccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
.-+.+++|++.++...++.-|.-++..+++..+|..|..|...+
T Consensus 1233 kLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred HhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 34678888888888888888888888888888888888877654
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=74.82 E-value=5.7 Score=30.66 Aligned_cols=16 Identities=0% Similarity=-0.118 Sum_probs=11.1
Q ss_pred HHHHHHHHc---CCccchh
Q psy8677 68 KHAYIAQHQ---GRFQTAV 83 (99)
Q Consensus 68 ~~Aei~ay~---gkf~EAe 83 (99)
..|.++... |++++|.
T Consensus 130 ~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHhhccccHHHHH
Confidence 566677777 7777776
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=74.75 E-value=9.4 Score=21.64 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh--hHhH
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
...|..+|.......+++.|...|.+.-... ..-+.--...|.++...|++++|. |.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5678999999999999999999887753211 000112246788999999999998 5443
No 122
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=74.62 E-value=7.9 Score=24.39 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 20 HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 20 h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
+...|..+|...+...+++-|...|-+.-+..- +-..--...|.++...|+|++|.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~ 65 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--------ANPIYLSNRAAAYSASGQHEKAA 65 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------cCHHHHHHHHHHHHHccCHHHHH
Confidence 356799999999999999999999977532210 11112246899999999999998
No 123
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=74.25 E-value=8.6 Score=32.07 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=37.0
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
.+.|.+++|+...+ ..| +..-|..||..-...++++-|..+|-+.
T Consensus 20 ~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 20 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788999987654 455 5788999999999999999999998765
No 124
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=73.91 E-value=8.6 Score=31.14 Aligned_cols=72 Identities=15% Similarity=0.053 Sum_probs=46.1
Q ss_pred cccCHHHHHHHHHh------------CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHH
Q psy8677 4 KNVGLNEAFQFVEA------------HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHA 70 (99)
Q Consensus 4 e~~~~~eA~~~~~~------------~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~A 70 (99)
..+.+++|+..... .| +...|..+|...+..++++-|...|-++-...- +-..--...|
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg 474 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--------WRWRLVWYRA 474 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--------CCHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--------chHHHHHHHH
Confidence 45677888766543 23 467899999999999999999888876522100 0001113466
Q ss_pred HHHHHcCCccchh
Q psy8677 71 YIAQHQGRFQTAV 83 (99)
Q Consensus 71 ei~ay~gkf~EAe 83 (99)
.++...|++++|.
T Consensus 475 ~~~~~~g~~~~A~ 487 (681)
T 2pzi_A 475 VAELLTGDYDSAT 487 (681)
T ss_dssp HHHHHHTCHHHHH
T ss_pred HHHHHcCCHHHHH
Confidence 6666667777666
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=73.88 E-value=15 Score=23.50 Aligned_cols=57 Identities=16% Similarity=-0.092 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC-----HHHHHHHHHHHcCCccchh--hHhH
Q psy8677 20 HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD-----DIMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 20 h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~-----~~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
++..|-.||..-...++++-|...|-++-. .-|+ --...+.++...|++++|. |++.
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILK-----------VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----------TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 356666666666666666666666654321 1121 2246789999999999999 7653
No 126
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=73.33 E-value=7 Score=21.89 Aligned_cols=47 Identities=17% Similarity=0.055 Sum_probs=36.6
Q ss_pred ccccCHHHHHHHHH----hCC---ChHHHHHHHHHHHhc-cCHHHHHHHHHHcCC
Q psy8677 3 LKNVGLNEAFQFVE----AHP---HPRLWKLLADKSLDL-LSLNHAEQALVNCQD 49 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~---h~~lW~~LA~~AL~~-~~l~iAe~AFvr~~d 49 (99)
...+.+++|+.+.. ..| ++..|..+|..-... ++++-|..+|.++-+
T Consensus 51 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 51 YNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 34677888887654 344 588999999999999 999999999887643
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=72.71 E-value=10 Score=24.17 Aligned_cols=45 Identities=20% Similarity=0.029 Sum_probs=37.2
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
...+.+++|+...+. .| ++..|-.||..-+..++++-|..+|-+.
T Consensus 66 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 66 QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356788888876554 45 6889999999999999999999999876
No 128
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.74 E-value=12 Score=22.17 Aligned_cols=45 Identities=18% Similarity=0.068 Sum_probs=36.0
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
+..+.+++|+..+. ..| ++..|-.+|..-....+++-|...|-++
T Consensus 76 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 76 LKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678888887654 344 5788999999999999999999888765
No 129
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=71.32 E-value=26 Score=25.18 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCC-----hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH------HHHHHHHHHc
Q psy8677 8 LNEAFQFVEAHPH-----PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI------MKHAYIAQHQ 76 (99)
Q Consensus 8 ~~eA~~~~~~~~h-----~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~------~~~Aei~ay~ 76 (99)
+++|+.+....+. ...+..||..-...++++-|...|-+.- ++. ++.+++. ...|.++..+
T Consensus 164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al-----~~~---~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL-----ELA---MDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHH---HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----HHH---HHcCCHHHHHHHHHHHHHHHHHC
Confidence 3445555555443 3356789999999999999999987652 222 2333322 3578889999
Q ss_pred CCccchh--hHhHHHHH
Q psy8677 77 GRFQTAV--YCDIIEYL 91 (99)
Q Consensus 77 gkf~EAe--Y~~i~~~~ 91 (99)
|++++|. |.+.-...
T Consensus 236 ~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 9999999 55554433
No 130
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=71.17 E-value=11 Score=21.08 Aligned_cols=47 Identities=13% Similarity=0.008 Sum_probs=36.4
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQD 49 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d 49 (99)
+..+.+++|..... ..| ++..|..+|......++++-|...|-++-+
T Consensus 49 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 49 AKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34677888887654 344 588899999999999999999988876643
No 131
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=69.85 E-value=18 Score=24.47 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=28.5
Q ss_pred cccCHHHHHHHHH---hCCChHHHHHHHHHHHh----ccCHHHHHHHHHHc
Q psy8677 4 KNVGLNEAFQFVE---AHPHPRLWKLLADKSLD----LLSLNHAEQALVNC 47 (99)
Q Consensus 4 e~~~~~eA~~~~~---~~~h~~lW~~LA~~AL~----~~~l~iAe~AFvr~ 47 (99)
..+.+++|+.+.+ ...++.-|..||..-.. ..+++-|...|-+.
T Consensus 18 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 68 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 68 (273)
T ss_dssp HTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence 3456666655543 23456667777777777 77777777777665
No 132
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=69.66 E-value=4.8 Score=30.90 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=52.5
Q ss_pred ccccCH-HHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCH--HHHHHHHHH
Q psy8677 3 LKNVGL-NEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDD--IMKHAYIAQ 74 (99)
Q Consensus 3 le~~~~-~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~--~~~~Aei~a 74 (99)
...+.+ ++|..+.. ..| ++..|..||......++++-|..+|-+.-... |+. -...|.++.
T Consensus 113 ~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~lg~~~~ 181 (474)
T 4abn_A 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-----------KNKVSLQNLSMVLR 181 (474)
T ss_dssp TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-----------CCHHHHHHHHHHHT
T ss_pred HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------CCHHHHHHHHHHHH
Confidence 345677 77776553 455 47889999999999999999999998764432 222 235677777
Q ss_pred Hc---------CCccchh--hHh
Q psy8677 75 HQ---------GRFQTAV--YCD 86 (99)
Q Consensus 75 y~---------gkf~EAe--Y~~ 86 (99)
.. |++++|. |.+
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~ 204 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKL 204 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HhccCChhhhhhhHHHHHHHHHH
Confidence 77 8888888 544
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=69.24 E-value=16 Score=22.06 Aligned_cols=55 Identities=7% Similarity=-0.058 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
...|..+|...+..++++-|...|-+.-+... +-..--...|.++...|++++|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~~a~~~~~~~~~~~A~ 67 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP--------SNAIYYGNRSLAYLRTECYGYAL 67 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHcCCHHHHH
Confidence 56789999999999999999998876533211 01112246889999999999998
No 134
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=68.91 E-value=28 Score=28.12 Aligned_cols=81 Identities=14% Similarity=0.001 Sum_probs=54.0
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc---------------------CCccchHHH
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC---------------------QDYAGLQLI 56 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~---------------------~d~~~v~~I 56 (99)
+..+.+++|..... .+| +...|-.+|...+..++++-|..+|-+. ++++.++..
T Consensus 444 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~ 523 (681)
T 2pzi_A 444 LDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFY 523 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHH
T ss_pred HhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHH
Confidence 45688888887654 344 5789999999999999999999888764 223223333
Q ss_pred HHhhCCC-C-H--HHHHHHHHHHcCCccchh
Q psy8677 57 KSLRALP-D-D--IMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 57 ~~l~~l~-~-~--~~~~Aei~ay~gkf~EAe 83 (99)
++.-+++ + . -...|.++.-.|++++|.
T Consensus 524 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 524 QTVWSTNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 3332221 1 1 235777778888888877
No 135
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=68.37 E-value=27 Score=24.29 Aligned_cols=54 Identities=19% Similarity=0.078 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC------HHHHHHHHHHHcCCccchh
Q psy8677 22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD------DIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~------~~~~~Aei~ay~gkf~EAe 83 (99)
..|..+|......++++-|...|-+.-. ...+.++ --...|.++...|++++|.
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLL--------IAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHH--------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--------HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 3577778888888888888777765421 1112222 2235666666777777776
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=68.03 E-value=16 Score=22.57 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=36.4
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
+..+.+++|+..+.. .| ++.-|-.+|..-...++++-|..+|-++
T Consensus 58 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 58 TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 356788888876553 44 5788999999999999999999998765
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=67.42 E-value=15 Score=20.93 Aligned_cols=68 Identities=10% Similarity=-0.100 Sum_probs=44.7
Q ss_pred cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677 4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR 78 (99)
Q Consensus 4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk 78 (99)
..+.+++|..+.. ..| ++..|..+|.......+++-|...|-++-.... +-+.--...|.++...|+
T Consensus 58 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 58 KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP--------DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHTT
T ss_pred HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc--------cchHHHHHHHHHHHHHhc
Confidence 4677888877654 344 478899999999999999999888876532210 011122356666666666
Q ss_pred c
Q psy8677 79 F 79 (99)
Q Consensus 79 f 79 (99)
+
T Consensus 130 ~ 130 (131)
T 2vyi_A 130 A 130 (131)
T ss_dssp C
T ss_pred C
Confidence 5
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=67.22 E-value=16 Score=22.46 Aligned_cols=45 Identities=22% Similarity=0.114 Sum_probs=36.4
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
...+.+++|+.... ..| ++..|-.+|..-...++++-|..+|-+.
T Consensus 63 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 63 QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678888877654 344 5788999999999999999999999775
No 139
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=66.75 E-value=32 Score=24.55 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCh----HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC---HHHHHHHHHHHcCCccch
Q psy8677 10 EAFQFVEAHPHP----RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIAQHQGRFQTA 82 (99)
Q Consensus 10 eA~~~~~~~~h~----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~---~~~~~Aei~ay~gkf~EA 82 (99)
+|+++....+++ ..|..||..-...++++-|...|-+.-+ +.+.....+. --...|.++...|++++|
T Consensus 209 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 209 KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA-----VFEESNILPSLPQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence 344444444433 3678899999999999999999877532 2232222121 234789999999999999
Q ss_pred h--hHhHH
Q psy8677 83 V--YCDII 88 (99)
Q Consensus 83 e--Y~~i~ 88 (99)
. |.+.-
T Consensus 284 ~~~~~~al 291 (383)
T 3ulq_A 284 HEYHSKGM 291 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 9 54443
No 140
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=66.16 E-value=17 Score=24.56 Aligned_cols=45 Identities=13% Similarity=0.041 Sum_probs=31.4
Q ss_pred ccccCHHHHHHHHHh----CC-C---hHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVEA----HP-H---PRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h---~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
+..+.+++|+..... .| + +..|-.||..-...++++-|...|-++
T Consensus 26 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 78 (261)
T 3qky_A 26 YNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERF 78 (261)
T ss_dssp HHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 456777777766543 33 3 777777888888888888777777665
No 141
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=64.22 E-value=12 Score=26.48 Aligned_cols=56 Identities=13% Similarity=-0.075 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC---HHHHHHHHHHHcCCccchh--hHh
Q psy8677 20 HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIAQHQGRFQTAV--YCD 86 (99)
Q Consensus 20 h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~---~~~~~Aei~ay~gkf~EAe--Y~~ 86 (99)
++..+-.+|..++..++++-|...|-++- +.-|+ --...|.++.-+|++++|. |.+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al-----------~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAW-----------QLSNQNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHH-----------HhCCcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35668899999999999999998887651 11121 2246789999999999998 544
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=63.97 E-value=7.8 Score=29.10 Aligned_cols=78 Identities=14% Similarity=0.015 Sum_probs=41.7
Q ss_pred cccCHHHHHHHHHhCCC---h----HHHHHHHHHHHhccCHHHHHHHHHHcCCccc-hHHHHHhhCCCCHHHHHHHHHHH
Q psy8677 4 KNVGLNEAFQFVEAHPH---P----RLWKLLADKSLDLLSLNHAEQALVNCQDYAG-LQLIKSLRALPDDIMKHAYIAQH 75 (99)
Q Consensus 4 e~~~~~eA~~~~~~~~h---~----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~-v~~I~~l~~l~~~~~~~Aei~ay 75 (99)
+.+.|++|......... + .-+-.||...-..++++-|..+|-+...-.. -.. .++-...+|-++.-
T Consensus 147 ~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~------~~da~~~~glaL~~ 220 (282)
T 4f3v_A 147 AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC------ARAIAWYLAMARRS 220 (282)
T ss_dssp HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT------HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc------cHHHHHHHHHHHHH
Confidence 44556666655543321 1 2456666666666666666666665421000 000 00123577888888
Q ss_pred cCCccchh--hHhH
Q psy8677 76 QGRFQTAV--YCDI 87 (99)
Q Consensus 76 ~gkf~EAe--Y~~i 87 (99)
+|+++||. |.+.
T Consensus 221 lGr~deA~~~l~~a 234 (282)
T 4f3v_A 221 QGNESAAVALLEWL 234 (282)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 88888887 5543
No 143
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=63.67 E-value=30 Score=23.05 Aligned_cols=66 Identities=11% Similarity=0.001 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC-----HHHHHHHHHHHcCCccchh--hHhHHHHH
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD-----DIMKHAYIAQHQGRFQTAV--YCDIIEYL 91 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~-----~~~~~Aei~ay~gkf~EAe--Y~~i~~~~ 91 (99)
...|..||......++++-|...|-++- ++......-++ --...|.++...|++++|. |.+.-...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQAL-----EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5678889999999999999999887753 33333321112 1246899999999999999 65554443
No 144
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=61.72 E-value=21 Score=20.77 Aligned_cols=55 Identities=15% Similarity=-0.008 Sum_probs=38.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC---CHHHHHHHHHHHcCCccchh--hHh
Q psy8677 24 WKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAV--YCD 86 (99)
Q Consensus 24 W~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~---~~~~~~Aei~ay~gkf~EAe--Y~~ 86 (99)
+-.+|...+..++++-|...|-++-+ .-.+-+ .--...|.++...|++++|. |.+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 64 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLE--------LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--------HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45678889999999999988876422 111111 12357899999999999998 544
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=61.34 E-value=13 Score=27.94 Aligned_cols=80 Identities=10% Similarity=0.002 Sum_probs=55.9
Q ss_pred cccccCHHHHHHHHHhC----CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677 2 YLKNVGLNEAFQFVEAH----PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG 77 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~----~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g 77 (99)
+++.+.+++|....... |.+..+-.+|..++...+++-|+..|-....+. -.+.. ..-....+.+++-.|
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~-----~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA-----GAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH-----HHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH-----HHHHHHHHHHHHHCC
Confidence 45678899999888744 333367788889999999999999996443322 00000 012357899999999
Q ss_pred Cccchh--hHhH
Q psy8677 78 RFQTAV--YCDI 87 (99)
Q Consensus 78 kf~EAe--Y~~i 87 (99)
+|+||. |.+.
T Consensus 186 ~~~eAl~~l~~a 197 (282)
T 4f3v_A 186 LFTEAERRLTEA 197 (282)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999998 6654
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=60.75 E-value=15 Score=23.97 Aligned_cols=45 Identities=9% Similarity=-0.096 Sum_probs=37.2
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
...+.+++|+...+ ..| ++..|-.||..-+..++++-|..+|-+.
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678888887654 445 5899999999999999999999999775
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=59.12 E-value=27 Score=21.18 Aligned_cols=57 Identities=11% Similarity=-0.098 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh--hHh
Q psy8677 22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV--YCD 86 (99)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe--Y~~ 86 (99)
..|-.+|...+..++++-|..+|-+.-.. --+-..--...|.++.-.|++++|. |.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNH 76 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46888999999999999999888654211 0001112247899999999999998 544
No 148
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=58.97 E-value=25 Score=20.74 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=36.2
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
...+.+++|+...+. .| ++..|..||..-...++++-|...|-++
T Consensus 38 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 38 RTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356788888876543 45 5889999999999999999999888765
No 149
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=58.42 E-value=5.8 Score=26.78 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=18.3
Q ss_pred hCCChHHHHHHHHHHHhccCH
Q psy8677 17 AHPHPRLWKLLADKSLDLLSL 37 (99)
Q Consensus 17 ~~~h~~lW~~LA~~AL~~~~l 37 (99)
..-+|.||..||..+|+.+++
T Consensus 33 ~~LtP~DWkslar~~L~pgq~ 53 (116)
T 4ard_A 33 NWLTPTDWNTLVRAVLSGGDH 53 (116)
T ss_pred hccChHhHHHHHHHHcCchhH
Confidence 456899999999999998775
No 150
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=56.71 E-value=72 Score=25.24 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=51.6
Q ss_pred cccCHHHHHHHHHh---------CC-Ch---HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH----
Q psy8677 4 KNVGLNEAFQFVEA---------HP-HP---RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI---- 66 (99)
Q Consensus 4 e~~~~~eA~~~~~~---------~~-h~---~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~---- 66 (99)
.+|.+++|..+.+. |+ || .....||..-...++++-|+.-|.+. |....++---..+.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-----L~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM-----VDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSCTTCHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----HHHHHHHcCCCCHHHHHH
Confidence 46788888777643 22 33 34566777777888888888777654 22222221112232
Q ss_pred -HHHHHHHHHcCCccchh--hHhHHH
Q psy8677 67 -MKHAYIAQHQGRFQTAV--YCDIIE 89 (99)
Q Consensus 67 -~~~Aei~ay~gkf~EAe--Y~~i~~ 89 (99)
...|.++..+|+++||+ |.+.-.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36899999999999999 655433
No 151
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=56.07 E-value=36 Score=26.25 Aligned_cols=73 Identities=15% Similarity=0.023 Sum_probs=49.0
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHH--HHH
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYI--AQH 75 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei--~ay 75 (99)
+..+.+++|...... .| ++..|..||..-...++++-|...|-++-... .+-+.--...+.+ +.-
T Consensus 51 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~ 122 (477)
T 1wao_1 51 LRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVK 122 (477)
T ss_dssp HHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHH
Confidence 456788888876543 44 57889999999999999999999987753221 0111122233444 666
Q ss_pred cCCccchh
Q psy8677 76 QGRFQTAV 83 (99)
Q Consensus 76 ~gkf~EAe 83 (99)
+|+|++|.
T Consensus 123 ~g~~~~A~ 130 (477)
T 1wao_1 123 QKAFERAI 130 (477)
T ss_dssp HHHHCCC-
T ss_pred HHHHHHHh
Confidence 79999988
No 152
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=55.05 E-value=19 Score=26.26 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=39.0
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCc
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDY 50 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~ 50 (99)
+..+.+++|+..+.. .| ++..|-.+|..-+...+++-|..+|-++-..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788899887764 34 6789999999999999999999999887543
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=55.00 E-value=32 Score=23.78 Aligned_cols=80 Identities=8% Similarity=-0.064 Sum_probs=52.2
Q ss_pred cccCHHHHHHHH-------HhCCCh-----HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC---HHHH
Q psy8677 4 KNVGLNEAFQFV-------EAHPHP-----RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD---DIMK 68 (99)
Q Consensus 4 e~~~~~eA~~~~-------~~~~h~-----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~---~~~~ 68 (99)
..+.+++|..+. ...|.+ ..|..+|..-...++++-|...|-+.-+. ......... --..
T Consensus 167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~-----~~~~~~~~~~~~~~~~ 241 (293)
T 2qfc_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI-----SCRINSMALIGQLYYQ 241 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTBCSSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH-----HHhcCcHHHHHHHHHH
Confidence 345566655554 444432 57888999999999999999888765332 222222221 1246
Q ss_pred HHHHHHHcCCccch-h--hHhHH
Q psy8677 69 HAYIAQHQGRFQTA-V--YCDII 88 (99)
Q Consensus 69 ~Aei~ay~gkf~EA-e--Y~~i~ 88 (99)
.|.++.-.|++++| . |.+.-
T Consensus 242 lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHH
Confidence 89999999999999 6 55443
No 154
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=54.23 E-value=75 Score=24.70 Aligned_cols=80 Identities=8% Similarity=-0.077 Sum_probs=51.2
Q ss_pred cCHHHHHHHHHh---------CC-Ch---HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH-----H
Q psy8677 6 VGLNEAFQFVEA---------HP-HP---RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI-----M 67 (99)
Q Consensus 6 ~~~~eA~~~~~~---------~~-h~---~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~-----~ 67 (99)
+.|++|..+.+. |+ || .....||..-...++++-|+.-|.+. |....++---..++ .
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-----L~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI-----IKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSCSSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-----HHHHHHHcCCCChHHHHHHH
Confidence 467777777643 33 33 33556777777788888888777765 23222222222333 3
Q ss_pred HHHHHHHHcCCccchh--hHhHHHH
Q psy8677 68 KHAYIAQHQGRFQTAV--YCDIIEY 90 (99)
Q Consensus 68 ~~Aei~ay~gkf~EAe--Y~~i~~~ 90 (99)
..|.++..+|+++||+ |.+.-..
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHH
Confidence 7899999999999999 6654433
No 155
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=53.83 E-value=37 Score=21.05 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=36.1
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
+..+.+++|+..+.. .| ++.-|-.+|..-...++++-|...|-++
T Consensus 74 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 74 LNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 346778888877643 44 5788999999999999999999988775
No 156
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=53.49 E-value=55 Score=22.97 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=52.4
Q ss_pred ccccCHHHHHHHHHh----CCChH------HHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCH------H
Q psy8677 3 LKNVGLNEAFQFVEA----HPHPR------LWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDD------I 66 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~h~~------lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~------~ 66 (99)
+..+.+++|..++.. .|... .+..+|......++++-|...|-+.-.. .....+. -
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM--------ARQHDVWHYALWSL 96 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HHHTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--------HHhcCcHHHHHHHH
Confidence 346778888887543 33221 3456777788889999998888664321 1122222 2
Q ss_pred HHHHHHHHHcCCccchh--hHhHHHHH
Q psy8677 67 MKHAYIAQHQGRFQTAV--YCDIIEYL 91 (99)
Q Consensus 67 ~~~Aei~ay~gkf~EAe--Y~~i~~~~ 91 (99)
...|.++..+|++++|. |.+.-...
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLI 123 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45899999999999999 65544433
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=52.68 E-value=36 Score=21.88 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=36.1
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
+..+.+++|+.++.. .| ++..|-.+|..-....+++-|...|-++
T Consensus 99 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 356788888877653 33 5788999999999999999999888765
No 158
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=52.12 E-value=20 Score=24.09 Aligned_cols=28 Identities=11% Similarity=-0.113 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 20 HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 20 h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
++..|-.+|...+..++++-|...|-++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 41 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAV 41 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4566677777777777777777777665
No 159
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=52.08 E-value=37 Score=22.36 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=36.8
Q ss_pred ccccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
...+.+++|+... ...| ++..|..||..-...++++-|..+|-++
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567888888665 4455 5788999999999999999999999876
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=50.81 E-value=40 Score=20.53 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=53.6
Q ss_pred ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC------HHHHHHH
Q psy8677 3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD------DIMKHAY 71 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~------~~~~~Ae 71 (99)
..++.+++|+.+-. ..| ++..|..+|..-+..++++-|...|-+.-++. .. ..+. --...|.
T Consensus 19 ~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-----~~--~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 19 YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-----RE--TRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HH--TTCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-----cc--cchhhHHHHHHHHHHHH
Confidence 35678888887653 455 47889999999999999999998887652211 00 1111 1235788
Q ss_pred HHHHcCCccchh--hHh
Q psy8677 72 IAQHQGRFQTAV--YCD 86 (99)
Q Consensus 72 i~ay~gkf~EAe--Y~~ 86 (99)
++.-.|++++|- |.+
T Consensus 92 ~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 888899999998 554
No 161
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=50.51 E-value=52 Score=22.96 Aligned_cols=56 Identities=7% Similarity=-0.105 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677 20 HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 20 h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe 83 (99)
....|..+|......++++-|...|.+.-.... +-+.--...|.++...|++++|.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~ 58 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--------LVAVYYTNRALCYLKMQQPEQAL 58 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHHHHHhcCHHHHH
Confidence 456789999999999999999999875522110 00111246899999999999998
No 162
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=49.79 E-value=67 Score=22.83 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=50.7
Q ss_pred HHHHHHHHHhCCC-----hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCH------HHHHHHHHHHc
Q psy8677 8 LNEAFQFVEAHPH-----PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDD------IMKHAYIAQHQ 76 (99)
Q Consensus 8 ~~eA~~~~~~~~h-----~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~------~~~~Aei~ay~ 76 (99)
+++|+++....+. ...+..||..-...++++-|...|-+.-+ +.. +.+++ -...|.++..+
T Consensus 166 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~~---~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS-----MAE---AEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHH---HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----HHH---HcCChHHHHHHHHHHHHHHHHC
Confidence 3445555555443 24577788888899999999988876522 222 22321 23689999999
Q ss_pred CCccchh--hHhHHHHHh
Q psy8677 77 GRFQTAV--YCDIIEYLR 92 (99)
Q Consensus 77 gkf~EAe--Y~~i~~~~~ 92 (99)
|++++|. |.+.-...+
T Consensus 238 g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 9999999 655544433
No 163
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=48.89 E-value=66 Score=22.55 Aligned_cols=70 Identities=16% Similarity=-0.003 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCChH----HHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC--CC---HHHHHHHHHHHcCCc
Q psy8677 9 NEAFQFVEAHPHPR----LWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL--PD---DIMKHAYIAQHQGRF 79 (99)
Q Consensus 9 ~eA~~~~~~~~h~~----lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l--~~---~~~~~Aei~ay~gkf 79 (99)
++|+.+....+.+. .+..+|...+..++++-|...|-+.- ......... +. --...|.++...|++
T Consensus 77 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 77 QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF-----QLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 34444444444432 24678888899999999998887642 222222111 11 112478888888999
Q ss_pred cchh
Q psy8677 80 QTAV 83 (99)
Q Consensus 80 ~EAe 83 (99)
++|+
T Consensus 152 ~~A~ 155 (373)
T 1hz4_A 152 DEAE 155 (373)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9988
No 164
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=48.32 E-value=33 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 19 PHPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 19 ~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
.++..|-.||...+...+++-|...|-+.-
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 33 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKAC 33 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 467788899999999999999998887653
No 165
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=48.11 E-value=65 Score=22.18 Aligned_cols=77 Identities=14% Similarity=0.068 Sum_probs=51.7
Q ss_pred cccCHHHHHHHHHhC-------CC----hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC-------H
Q psy8677 4 KNVGLNEAFQFVEAH-------PH----PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD-------D 65 (99)
Q Consensus 4 e~~~~~eA~~~~~~~-------~h----~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~-------~ 65 (99)
..+.+++|+.+.... .+ ...|..+|..-...++++-|...|-+.-++ . +..++ -
T Consensus 127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~-----~---~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ-----L---EALHDNEEFDVKV 198 (293)
T ss_dssp TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----H---HHSCCCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----H---HhcCccccchHHH
Confidence 456788888875431 11 237788899889999999998888765321 1 11221 1
Q ss_pred HHHHHHHHHHcCCccchh--hHhHH
Q psy8677 66 IMKHAYIAQHQGRFQTAV--YCDII 88 (99)
Q Consensus 66 ~~~~Aei~ay~gkf~EAe--Y~~i~ 88 (99)
-...|.++..+|+|++|. |.+.-
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 135788999999999999 54443
No 166
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=47.82 E-value=22 Score=26.58 Aligned_cols=71 Identities=17% Similarity=0.065 Sum_probs=48.8
Q ss_pred ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH--HHHHHHHHH
Q psy8677 3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI--MKHAYIAQH 75 (99)
Q Consensus 3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~--~~~Aei~ay 75 (99)
+..+.+++|+.++.. .| ++..|-.+|..-....+++-|...|-+.-... -.+.. ...+.+...
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----------P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA----------PEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHH
Confidence 456788999887753 34 57889999999999999999988877653221 01222 245666667
Q ss_pred cCCccchh
Q psy8677 76 QGRFQTAV 83 (99)
Q Consensus 76 ~gkf~EAe 83 (99)
.|++++|+
T Consensus 354 ~~~~~~a~ 361 (370)
T 1ihg_A 354 IKAQKDKE 361 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777776
No 167
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=47.45 E-value=20 Score=25.37 Aligned_cols=29 Identities=0% Similarity=-0.163 Sum_probs=24.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHcCCccc
Q psy8677 24 WKLLADKSLDLLSLNHAEQALVNCQDYAG 52 (99)
Q Consensus 24 W~~LA~~AL~~~~l~iAe~AFvr~~d~~~ 52 (99)
...||..|...+++++|..+|.-+||++.
T Consensus 79 L~kla~iA~~~g~~n~af~~~l~lGdv~~ 107 (177)
T 3mkq_B 79 LSKMQNIAQTREDFGSMLLNTFYNNSTKE 107 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHCccHHHHHHHHHHcCCHHH
Confidence 35778888889999999999988888764
No 168
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=47.33 E-value=74 Score=22.66 Aligned_cols=74 Identities=8% Similarity=-0.053 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCCh----HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC--CHHHHHHHHHHHcCCccch
Q psy8677 9 NEAFQFVEAHPHP----RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP--DDIMKHAYIAQHQGRFQTA 82 (99)
Q Consensus 9 ~eA~~~~~~~~h~----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~--~~~~~~Aei~ay~gkf~EA 82 (99)
++|+++++..+++ ..+..||..-...++++-|...|-+.-+ +.+...... ..-...|.++.-.|++++|
T Consensus 206 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 280 (378)
T 3q15_A 206 EAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK-----VSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHHHHCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HHHhhCChhHHHHHHHHHHHHHHCCCHHHH
Confidence 4445555554443 3456788888899999999998887633 222221111 1224689999999999999
Q ss_pred h--hHhH
Q psy8677 83 V--YCDI 87 (99)
Q Consensus 83 e--Y~~i 87 (99)
. |.+.
T Consensus 281 ~~~~~~a 287 (378)
T 3q15_A 281 FQFIEEG 287 (378)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9 5443
No 169
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=47.10 E-value=59 Score=21.47 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=39.5
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC---CHHHHHHHHHHHcCCccchh
Q psy8677 19 PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 19 ~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~---~~~~~~Aei~ay~gkf~EAe 83 (99)
.++.-|-.+|...+..++++-|...|-++-+ .--+-+ .--...|.++.-.|++++|.
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~a~~~lg~~~~~~~~~~~A~ 61 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDN--------RYPFGPYSQQVQLDLIYAYYKNADLPLAQ 61 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HCTTSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4566778888899999999999988876532 110001 12346788888889999888
No 170
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=44.48 E-value=76 Score=21.98 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhc-cCHHHHHHHHHHcCCccchHHHHHhhCCCCH------HHHHHHHHHHcCCccchh--hHhH
Q psy8677 22 RLWKLLADKSLDL-LSLNHAEQALVNCQDYAGLQLIKSLRALPDD------IMKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 22 ~lW~~LA~~AL~~-~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~------~~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
..|..||..-... ++++-|...|-+.-++. ....++ -...|.++.-+|++++|. |.+.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWY--------AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--------HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3677788777775 88999988887653321 111111 135699999999999998 5543
No 171
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=44.37 E-value=64 Score=24.27 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=26.5
Q ss_pred ccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccC-HHHHHHHHHHc
Q psy8677 5 NVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLS-LNHAEQALVNC 47 (99)
Q Consensus 5 ~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~-l~iAe~AFvr~ 47 (99)
.+.+++|+... ..+| +..-|..+|..-...++ ++-|..+|-++
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a 158 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 158 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 45566666543 3455 46677777776666664 77776666554
No 172
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=42.83 E-value=9.3 Score=25.14 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCccch
Q psy8677 66 IMKHAYIAQHQGRFQTA 82 (99)
Q Consensus 66 ~~~~Aei~ay~gkf~EA 82 (99)
..++||-++..|+|+||
T Consensus 18 ~~RrAe~ll~~gkydeA 34 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEA 34 (97)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHhcCCHHHH
Confidence 35899999999999999
No 173
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=41.21 E-value=82 Score=21.88 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=29.2
Q ss_pred HHHHHHHH-----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677 9 NEAFQFVE-----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQD 49 (99)
Q Consensus 9 ~eA~~~~~-----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d 49 (99)
++|....+ ..| ++.+|..+|..-...++++-|+..|-++-.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 66664433 244 356899999888888889999888877643
No 174
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=40.13 E-value=1.3e+02 Score=23.20 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=53.0
Q ss_pred cccCHHHHHHHHHh---------CC-Ch---HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH----
Q psy8677 4 KNVGLNEAFQFVEA---------HP-HP---RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI---- 66 (99)
Q Consensus 4 e~~~~~eA~~~~~~---------~~-h~---~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~---- 66 (99)
.++.|++|..+++. ++ || .....||......++++-|+.-|.+. |....++---..+.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~-----L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT-----MEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----HHHHHHHSCSSCHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH-----HHhHHHHcCCCChHHHHH
Confidence 35678888887752 22 32 34666777777888888888777665 22222221112222
Q ss_pred -HHHHHHHHHcCCccchh--hHhHHHHH
Q psy8677 67 -MKHAYIAQHQGRFQTAV--YCDIIEYL 91 (99)
Q Consensus 67 -~~~Aei~ay~gkf~EAe--Y~~i~~~~ 91 (99)
...|-++..+|+++||+ |.+.-...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 36899999999999999 66554433
No 175
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=39.91 E-value=92 Score=21.61 Aligned_cols=45 Identities=2% Similarity=0.070 Sum_probs=33.5
Q ss_pred ccCHHHHHHHH----HhCCC-hH-HHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677 5 NVGLNEAFQFV----EAHPH-PR-LWKLLADKSLDLLSLNHAEQALVNCQD 49 (99)
Q Consensus 5 ~~~~~eA~~~~----~~~~h-~~-lW~~LA~~AL~~~~l~iAe~AFvr~~d 49 (99)
.+.+++|..+- ...|. +. .|..+|......++++-|+..|-+.-.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45677776543 33453 44 799999999999999999999988644
No 176
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=39.50 E-value=1.2e+02 Score=22.75 Aligned_cols=72 Identities=8% Similarity=0.124 Sum_probs=49.6
Q ss_pred cccC-HHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC-C-CH--HHHHHHHH
Q psy8677 4 KNVG-LNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL-P-DD--IMKHAYIA 73 (99)
Q Consensus 4 e~~~-~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l-~-~~--~~~~Aei~ 73 (99)
..+. +++|+.+.. .+| +...|..+|..-...++++-|..+|-++ -++ | +. -..+|.++
T Consensus 143 ~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka------------l~ldP~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 143 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI------------LNQDAKNYHAWQHRQWVI 210 (382)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH------------HHHCTTCHHHHHHHHHHH
T ss_pred HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH------------HHhCccCHHHHHHHHHHH
Confidence 3454 888887654 455 5788999998888777777776666544 222 2 22 24688889
Q ss_pred HHcCCccchh--hHhH
Q psy8677 74 QHQGRFQTAV--YCDI 87 (99)
Q Consensus 74 ay~gkf~EAe--Y~~i 87 (99)
..+|++++|- |.+.
T Consensus 211 ~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 211 QEFKLWDNELQYVDQL 226 (382)
T ss_dssp HHHTCCTTHHHHHHHH
T ss_pred HHcCChHHHHHHHHHH
Confidence 9999999988 5543
No 177
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=37.21 E-value=38 Score=26.60 Aligned_cols=82 Identities=6% Similarity=0.052 Sum_probs=59.1
Q ss_pred ccCHHHHHHHHHhCCChH--HHHHH----HHHHHhccCHHHHHHHHHHcCCccchHHHH---------------------
Q psy8677 5 NVGLNEAFQFVEAHPHPR--LWKLL----ADKSLDLLSLNHAEQALVNCQDYAGLQLIK--------------------- 57 (99)
Q Consensus 5 ~~~~~eA~~~~~~~~h~~--lW~~L----A~~AL~~~~l~iAe~AFvr~~d~~~v~~I~--------------------- 57 (99)
-.+|+|++.++|.+..+. +|..| |.-=...++-.-|-.||+--++++++--|-
T Consensus 226 l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~~~~~~~~~~~~~~~s~~~~ 305 (399)
T 2pm7_A 226 VSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLSEFPDLEDKLKKDNKTIYEA 305 (399)
T ss_dssp GGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHSHHHHHHHHHHTTCCHHHH
T ss_pred hhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHhcchhhhccccccCCcccc
Confidence 358999999999988877 88755 444445578899999999999877643332
Q ss_pred ----------Hhh---C-C------CC-----HHHHHHHHHHHcCCccchh-hHh
Q psy8677 58 ----------SLR---A-L------PD-----DIMKHAYIAQHQGRFQTAV-YCD 86 (99)
Q Consensus 58 ----------~l~---~-l------~~-----~~~~~Aei~ay~gkf~EAe-Y~~ 86 (99)
++. . + .. .-..-|+++|=+|.++.|- |.+
T Consensus 306 ~~~~Lqe~iEkv~vl~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~ 360 (399)
T 2pm7_A 306 HSECMTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELATEFLN 360 (399)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 110 0 0 11 2247899999999999999 775
No 178
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=37.21 E-value=1e+02 Score=21.31 Aligned_cols=54 Identities=9% Similarity=-0.148 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC-------HHHHHHHHHHHcCCccchh
Q psy8677 22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD-------DIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~-------~~~~~Aei~ay~gkf~EAe 83 (99)
..|..||..-+..++++-|...|-+.-+... +.+. --...+.++...|++++|.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSM--------GNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS--------SCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh--------cCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4577889888999999999888776533210 1111 1145678888899999998
No 179
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.49 E-value=1.4e+02 Score=23.15 Aligned_cols=78 Identities=10% Similarity=0.007 Sum_probs=47.0
Q ss_pred ccccCHHHHHHHHHhCCCh-----------HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH-----
Q psy8677 3 LKNVGLNEAFQFVEAHPHP-----------RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI----- 66 (99)
Q Consensus 3 le~~~~~eA~~~~~~~~h~-----------~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~----- 66 (99)
.+.|.|.+|..+.+.-+.+ ..+-.-....+...|+.-|+..+.+++. +-....+.++
T Consensus 148 e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~-------~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 148 KEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK-------KTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HHHHSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hhcccCCcHHHHHHH
Confidence 3568889998888774322 1344455566666666666655554311 1111223333
Q ss_pred -HHHHHHHHHcCCccchh--hHhH
Q psy8677 67 -MKHAYIAQHQGRFQTAV--YCDI 87 (99)
Q Consensus 67 -~~~Aei~ay~gkf~EAe--Y~~i 87 (99)
...+.++++.++|.+|. |..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 36788889999999998 5544
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.49 E-value=1e+02 Score=21.83 Aligned_cols=73 Identities=8% Similarity=0.098 Sum_probs=45.3
Q ss_pred ccccCHHHHHHHHHhC------C-----ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHH----
Q psy8677 3 LKNVGLNEAFQFVEAH------P-----HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIM---- 67 (99)
Q Consensus 3 le~~~~~eA~~~~~~~------~-----h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~---- 67 (99)
.+.|.+++|..+.+.- . ....|..++..-+..++++-|...|.+... -...++.+..
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART--------AANSIYCPTQTVAE 217 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHHSCCCHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--------HhhcCCCchHHHHH
Confidence 3567788887776531 1 123577778888888888888888766532 1123333332
Q ss_pred ---HHHHHHHHcCCccchh
Q psy8677 68 ---KHAYIAQHQGRFQTAV 83 (99)
Q Consensus 68 ---~~Aei~ay~gkf~EAe 83 (99)
..+.++...|+|++|.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3455566677888887
No 181
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=34.11 E-value=11 Score=26.22 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=20.1
Q ss_pred HhCCChHHHHHHHHHHHhccCHHHHH
Q psy8677 16 EAHPHPRLWKLLADKSLDLLSLNHAE 41 (99)
Q Consensus 16 ~~~~h~~lW~~LA~~AL~~~~l~iAe 41 (99)
...-+|.||..||.++|...++-.=+
T Consensus 50 ~~~LtP~DW~~lara~Ls~gqyllWk 75 (140)
T 2kgf_A 50 DNWLTPTDWNTLVRAVLSGGDHLLWK 75 (140)
T ss_dssp TSBCCHHHHHHHHHHHCCSHHHHHHH
T ss_pred hCCCChHHHHHHHHHHcCcchhHHHH
Confidence 34457999999999999888765433
No 182
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=33.00 E-value=15 Score=25.48 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=22.2
Q ss_pred HHhCCChHHHHHHHHHHHhccCHHHHHHHH
Q psy8677 15 VEAHPHPRLWKLLADKSLDLLSLNHAEQAL 44 (99)
Q Consensus 15 ~~~~~h~~lW~~LA~~AL~~~~l~iAe~AF 44 (99)
+...-+|.||..||.++|...++-.=+-.|
T Consensus 44 a~~~LtP~DW~~lara~Ls~gqyllWkse~ 73 (140)
T 2v4x_A 44 GTQALPPNDWKQTARACLSGGDYLLWKSEF 73 (140)
T ss_dssp HTSCCCHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHcCcchhHHHHHHH
Confidence 444567999999999999988865444333
No 183
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=32.76 E-value=1.1e+02 Score=20.18 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=35.7
Q ss_pred ccccCHHHHHHHHH----hCCC----hHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677 3 LKNVGLNEAFQFVE----AHPH----PRLWKLLADKSLDLLSLNHAEQALVNC 47 (99)
Q Consensus 3 le~~~~~eA~~~~~----~~~h----~~lW~~LA~~AL~~~~l~iAe~AFvr~ 47 (99)
++.+.+++|+.... ..|. +.-|-.+|..-...++++-|..+|-++
T Consensus 15 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 15 LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56788999987655 3443 357889999999999999999999875
No 184
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=31.92 E-value=1.2e+02 Score=23.74 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH--HHHHHHHHHcCCccchh
Q psy8677 19 PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI--MKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 19 ~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~--~~~Aei~ay~gkf~EAe 83 (99)
..+.-|..+|...+..++++-|...+-+.-... ++.. ...|.++.+.|++++|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----------~s~~a~~llG~~~~~~G~~~eA~ 330 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----------MSWLNYVLLGKVYEMKGMNREAA 330 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHCCCHHHHH
Confidence 467888889988998999999988877542221 3322 47899999999999999
No 185
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=31.04 E-value=48 Score=28.31 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHcCCc
Q psy8677 19 PHPRLWKLLADKSLDLLSLNHAEQALVNCQDY 50 (99)
Q Consensus 19 ~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~ 50 (99)
.+...|.+||.-|..-.+++=|..||.+|=+-
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~ 642 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA 642 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999553
No 186
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=27.63 E-value=1.3e+02 Score=21.67 Aligned_cols=64 Identities=19% Similarity=0.101 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC---CCHH---HHHHHHHHHcCCccchh--hHhHHH
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL---PDDI---MKHAYIAQHQGRFQTAV--YCDIIE 89 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l---~~~~---~~~Aei~ay~gkf~EAe--Y~~i~~ 89 (99)
.+....||..-...++++-|...|-+. +++++..... ++.. ...|.++...|++++|. |.+...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kA-----l~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKA-----EELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 466788999999999999999988775 3444443321 1111 25789999999999999 555443
No 187
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=22.56 E-value=1.3e+02 Score=22.70 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=33.3
Q ss_pred ccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677 5 NVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQ 48 (99)
Q Consensus 5 ~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~ 48 (99)
.+.+++|..+. ...| ++..|..+|..-+..++++-|+..|-++=
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45666665443 4455 47789999999999999999999998873
No 188
>1wmg_A Netrin receptor UNC5H2; six helix bundle, death domain, apoptosis, structural genomi NPPSFA; 2.10A {Mus musculus} SCOP: a.77.1.2
Probab=22.51 E-value=58 Score=20.59 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC--C-CHHHHHHHHHHHcCCccchh
Q psy8677 21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL--P-DDIMKHAYIAQHQGRFQTAV 83 (99)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l--~-~~~~~~Aei~ay~gkf~EAe 83 (99)
..+|+.||. .+.|+. +..|.+.+.-+--.++..-+.. + ..-....+++.-.|+.|=++
T Consensus 31 g~dWr~LA~----~Lg~~~-~i~~~~~~~SPt~~LL~~W~~~~~~~~tv~~L~~~L~~mgR~Da~~ 91 (103)
T 1wmg_A 31 GNDWRLLAQ----KLSMDR-YLNYFATKASPTGVILDLWEARQQDDGDLNSLASALEEMGKSEMLV 91 (103)
T ss_dssp TSSHHHHHH----HTTCGG-GHHHHHTSSCHHHHHHHHHHHHCCSTTTHHHHHHHHHHTTCHHHHH
T ss_pred ccCHHHHHH----HcCChH-HHHHHHcCCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHcCCHHHHH
Confidence 578999997 467766 6666666655555555554321 2 22334556666666655544
No 189
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=21.47 E-value=1.8e+02 Score=19.47 Aligned_cols=40 Identities=20% Similarity=-0.003 Sum_probs=28.3
Q ss_pred cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHH
Q psy8677 2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAE 41 (99)
Q Consensus 2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe 41 (99)
+.++|.+++|+++.+..+.|.+=-.+|..+=..+-.+-++
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le 89 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALE 89 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHHTCHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHH
Confidence 4578999999999999998877555554454444444444
No 190
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.51 E-value=43 Score=21.31 Aligned_cols=27 Identities=30% Similarity=0.683 Sum_probs=15.6
Q ss_pred HHHHHHH-HhCCChHHHHHHHHHHHhcc
Q psy8677 9 NEAFQFV-EAHPHPRLWKLLADKSLDLL 35 (99)
Q Consensus 9 ~eA~~~~-~~~~h~~lW~~LA~~AL~~~ 35 (99)
.+|+.+. ..+|++.=|..||+.==.++
T Consensus 6 ~ea~dL~~~e~pse~YWk~lAE~Rr~AL 33 (83)
T 1wlq_A 6 QEAFDLISKENPSSQYWKEVAEQRRKAL 33 (83)
T ss_dssp --------CCCTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 5788875 58999999999998644333
No 191
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.28 E-value=37 Score=21.39 Aligned_cols=22 Identities=32% Similarity=0.749 Sum_probs=13.7
Q ss_pred HHHHH-HHhCCChHHHHHHHHHH
Q psy8677 10 EAFQF-VEAHPHPRLWKLLADKS 31 (99)
Q Consensus 10 eA~~~-~~~~~h~~lW~~LA~~A 31 (99)
+|+.+ +..+|++.=|..||+.=
T Consensus 3 ea~dL~~~e~Pse~YWk~lAE~R 25 (79)
T 2zxx_A 3 EAFDLISKENPSSQYWKEVAEQR 25 (79)
T ss_dssp -------CCCTTCTHHHHHHHHH
T ss_pred hHHHHHhcCCCcHHHHHHHHHHH
Confidence 67776 45789999999999863
Done!