RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8677
(99 letters)
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 42.0 bits (99), Expect = 5e-06
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 8 LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIM 67
L A + W+ L D SL + A +A N D L L+ S + ++
Sbjct: 668 LTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLV 727
Query: 68 KHAYIAQHQG----RFQTAVYCDIIE 89
A A+ G F I+
Sbjct: 728 TLAKDAETTGKFNLAFNAYWIAGDIQ 753
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 37.4 bits (86), Expect = 2e-04
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 8 LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIM 67
L+ A + W+ L ++L + + AE + L + + + +
Sbjct: 21 LDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLS 80
Query: 68 KHAYIAQHQG----RFQTAVYCDIIE 89
K IAQ + Y + +
Sbjct: 81 KMQNIAQTREDFGSMLLNTFYNNSTK 106
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 33.4 bits (76), Expect = 0.007
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 18/85 (21%)
Query: 8 LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIM 67
L+ A++F E P +W LA L + A + + D P M
Sbjct: 41 LDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADD-------------PSSYM 87
Query: 68 KHAYIAQHQGRFQTAVYCDIIEYLR 92
+ A G ++ ++++YL+
Sbjct: 88 EVVQAANTSGNWE-----ELVKYLQ 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.008
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 20/81 (24%)
Query: 6 VGLNEAFQFVEAHPHPRLW-KLLADKSLDLLSLNHAEQA---LVNCQDYAGLQLIKSLRA 61
+G+ EA+P+ L +L D SL + E +++ + Q+ +
Sbjct: 306 IGV--RCY--EAYPNTSLPPSILED------SLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 62 ----LPDDIMKHAYIAQHQGR 78
LP K I+ G
Sbjct: 356 TNSHLPAG--KQVEISLVNGA 374
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 32.3 bits (73), Expect = 0.015
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 18/86 (20%)
Query: 8 LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIM 67
L+ A++F E P +W LA L + A + + D P M
Sbjct: 1092 LDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADD-------------PSSYM 1138
Query: 68 KHAYIAQHQGRFQTAVYCDIIEYLRR 93
+ A G ++ ++++YL+
Sbjct: 1139 EVVQAANTSGNWE-----ELVKYLQM 1159
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles,
endocytosis, SELF- assembly, alpha-alpha superhelix;
2.60A {Bos taurus} SCOP: a.118.1.3
Length = 449
Score = 32.2 bits (73), Expect = 0.015
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 18/85 (21%)
Query: 8 LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIM 67
L+ A++F E P +W LA L + A + + D P M
Sbjct: 19 LDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADD-------------PSSYM 65
Query: 68 KHAYIAQHQGRFQTAVYCDIIEYLR 92
+ A G ++ ++++YL+
Sbjct: 66 EVVQAANTSGNWE-----ELVKYLQ 85
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C;
calmodulin-bound, coiled coil, acetylation,
methylation, phosphoprotein, polymorphism; 2.10A {Homo
sapiens} PDB: 3oxq_E
Length = 81
Score = 25.6 bits (56), Expect = 1.7
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRA 61
++WK + K LD + + + + YA + + R
Sbjct: 36 KIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQEYFRK 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 2.3
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 10 EAFQFVEAHPHPRLWKLLADKSLDLLSLN 38
+A + ++A L KL AD S L++
Sbjct: 20 QALKKLQA----SL-KLYADDSAPALAIK 43
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation,
transcription; 1.80A {Drosophila melanogaster} PDB:
3nth_A* 3nti_A*
Length = 169
Score = 24.9 bits (54), Expect = 4.4
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 35 LSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQH 75
+ + V+ D+ + + R LP+++ K A ++H
Sbjct: 70 RKVLDDGKCEVHFIDFGNNAVTQQFRQLPEELAKPARYSRH 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 8.7
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 20 HPRLWKLLADKSLDLLSLNHAEQ-ALVNCQDYAGLQLIK-SLRALPDDIMKHAY 71
+PR ++A+ D L + VNC +I+ SL L + +
Sbjct: 326 NPRRLSIIAESIRD--GLATWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKMF 375
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.414
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,543,192
Number of extensions: 77757
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 16
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)