RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8677
         (99 letters)



>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 114

 Score = 24.5 bits (53), Expect = 2.2
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 49  DYAGLQLIKSL-RALPDDIMKHAYIAQHQGRFQTAVYCDIIEYLRR 93
           D AG +L +   R  P+   +H YI +       A    + + L R
Sbjct: 60  DEAGEKLRRQFRRMFPE--AEHLYIDRAYREVAAAPIWHLAQVLLR 103


>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus
           subtilis [TaxId: 1423]}
          Length = 372

 Score = 24.2 bits (52), Expect = 3.1
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 48  QDYAGLQLIKSLRALPDDIMKHAY 71
             YA + L + L  LP+  ++   
Sbjct: 331 DHYADVSLNQWLAMLPETFVQAHL 354


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 367,828
Number of extensions: 13801
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 6
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)