BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8678
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y1E|X Chain X, Human Formylglycine Generating Enzyme
pdb|1Y1H|X Chain X, Human Formylglycine Generating Enzyme, Oxidised Cys
Refined As Hydroperoxide
pdb|1Y1I|X Chain X, Hyuman Formylglycine Generating Enzyme, Reduced Form
Length = 311
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/346 (55%), Positives = 231/346 (66%), Gaps = 54/346 (15%)
Query: 5 PAP-PVER---YKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQF 60
P P P ER + MV +P F MGT+ P + +DGE P+R VT+DAFY+D +EVSNT+F
Sbjct: 5 PGPVPGERQLAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEF 64
Query: 61 QEFVSATGYVTEAEKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVV 120
++FV++TGY+TEAEKFGD+FVFE +LSE+ + I Q
Sbjct: 65 EKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTNIQQ------------------------ 100
Query: 121 HISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPV 180
AVA W LP + +W HPEG DSTI HR +HPV
Sbjct: 101 ------AVAAAPWW---LPVKG-----------------ANWRHPEGPDSTILHRPDHPV 134
Query: 181 VHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFP 240
+HVSWNDAVAYCTW G RLPTEAEWEY CRGGL NRLFPWGN L P+G+H AN+WQGEFP
Sbjct: 135 LHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFP 194
Query: 241 TNNTAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTD 300
NT DG+ TAPV ++ N +GLYN+VGN WEWT+DWW VHH + NPKGP +G D
Sbjct: 195 VTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKD 254
Query: 301 KVKKGGSYLCNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGPT 346
+VKKGGSY+C+ YCYR+RCAARSQNTPDSSA NLGFRCAAD+ PT
Sbjct: 255 RVKKGGSYMCHRSYCYRYRCAARSQNTPDSSASNLGFRCAADRLPT 300
>pdb|2AII|X Chain X, Wild-Type Formylglycine Generating Enzyme Reacted With
Iodoacetamide
Length = 286
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/334 (55%), Positives = 225/334 (67%), Gaps = 50/334 (14%)
Query: 12 YKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVT 71
+ MV +P F MGT+ P + +DGE P+R VT+DAFY+D +EVSNT+F++FV++TGY+T
Sbjct: 3 HSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLT 62
Query: 72 EAEKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYC 131
EAEKFGD+FVFE +LSE+ + I Q AVA
Sbjct: 63 EAEKFGDSFVFEGMLSEQVKTNIQQ------------------------------AVAAA 92
Query: 132 TWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHVSWNDAVAY 191
W LP + +W HPEG DSTI HR +HPV+HVSWNDAVAY
Sbjct: 93 PWW---LPVKG-----------------ANWRHPEGPDSTILHRPDHPVLHVSWNDAVAY 132
Query: 192 CTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLS 251
CTW G RLPTEAEWEY CRGGL NRLFPWGN L P+G+H AN+WQGEFP NT DG+
Sbjct: 133 CTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFQG 192
Query: 252 TAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTDKVKKGGSYLCN 311
TAPV ++ N +GLYN+VGN WEWT+DWW VHH + NPKGP +G D+VKKGGSY+C+
Sbjct: 193 TAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMCH 252
Query: 312 EQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGP 345
YCYR+RCAARSQNTPDSSA NLGFRCAAD+ P
Sbjct: 253 RSYCYRYRCAARSQNTPDSSASNLGFRCAADRLP 286
>pdb|1Y1F|X Chain X, Human Formylglycine Generating Enzyme With Cysteine
Sulfenic Acid
pdb|1Y1J|X Chain X, Human Formylglycine Generating Enzyme, Sulfonic
AcidDESULFURATED FORM
Length = 311
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/346 (55%), Positives = 230/346 (66%), Gaps = 54/346 (15%)
Query: 5 PAP-PVER---YKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQF 60
P P P ER + MV +P F MGT+ P + +DGE P+R VT+DAFY+D +EVSNT+F
Sbjct: 5 PGPVPGERQLAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEF 64
Query: 61 QEFVSATGYVTEAEKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVV 120
++FV++TGY+TEAEKFGD+FVFE +LSE+ + I Q
Sbjct: 65 EKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTNIQQ------------------------ 100
Query: 121 HISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPV 180
AVA W LP + +W HPEG DSTI HR +HPV
Sbjct: 101 ------AVAAAPWW---LPVKG-----------------ANWRHPEGPDSTILHRPDHPV 134
Query: 181 VHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFP 240
+HVSWNDAVAYCTW G RLPTEAEWEY CRGGL NRLFPWGN L P+G+H AN+WQGEFP
Sbjct: 135 LHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFP 194
Query: 241 TNNTAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTD 300
NT DG+ TAPV ++ N +GLYN+VGN WEWT+DWW VHH + NPKGP +G D
Sbjct: 195 VTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKD 254
Query: 301 KVKKGGSYLCNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGPT 346
+VKKGGSY+ + YCYR+RCAARSQNTPDSSA NLGFRCAAD+ PT
Sbjct: 255 RVKKGGSYMXHRSYCYRYRCAARSQNTPDSSASNLGFRCAADRLPT 300
>pdb|2AFT|X Chain X, Formylglycine Generating Enzyme C336s Mutant
pdb|2AIJ|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
Bound To Substrate Peptide Ctpsr
pdb|2AIK|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
Bound To Substrate Peptide Lctpsra
pdb|2HI8|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
Bromide Co- Crystallization
pdb|2HIB|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
Iodide Co- Crystallization
Length = 286
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/334 (55%), Positives = 224/334 (67%), Gaps = 50/334 (14%)
Query: 12 YKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVT 71
+ MV +P F MGT+ P + +DGE P+R VT+DAFY+D +EVSNT+F++FV++TGY+T
Sbjct: 3 HSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLT 62
Query: 72 EAEKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYC 131
EAEKFGD+FVFE +LSE+ + I Q AVA
Sbjct: 63 EAEKFGDSFVFEGMLSEQVKTNIQQ------------------------------AVAAA 92
Query: 132 TWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHVSWNDAVAY 191
W LP + +W HPEG DSTI HR +HPV+HVSWNDAVAY
Sbjct: 93 PWW---LPVKG-----------------ANWRHPEGPDSTILHRPDHPVLHVSWNDAVAY 132
Query: 192 CTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLS 251
CTW G RLPTEAEWEY CRGGL NRLFPWGN L P+G+H AN+WQGEFP NT DG+
Sbjct: 133 CTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFQG 192
Query: 252 TAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTDKVKKGGSYLCN 311
TAPV ++ N +GLYN+VGN WEWT+DWW VHH + NPKGP +G D+VKKGGSY+ +
Sbjct: 193 TAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMSH 252
Query: 312 EQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGP 345
YCYR+RCAARSQNTPDSSA NLGFRCAAD+ P
Sbjct: 253 RSYCYRYRCAARSQNTPDSSASNLGFRCAADRLP 286
>pdb|1Y1G|X Chain X, Human Formylglycine Generating Enzyme, Double Sulfonic
Acid Form
pdb|1Z70|X Chain X, 1.15a Resolution Structure Of The Formylglycine Generating
Enzyme Fge
Length = 311
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/346 (54%), Positives = 229/346 (66%), Gaps = 54/346 (15%)
Query: 5 PAP-PVER---YKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQF 60
P P P ER + MV +P F MGT+ P + +DGE P+R VT+DAFY+D +EVSNT+F
Sbjct: 5 PGPVPGERQLAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEF 64
Query: 61 QEFVSATGYVTEAEKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVV 120
++FV++TGY+TEAEKFGD+FVFE +LSE+ + I Q
Sbjct: 65 EKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTNIQQ------------------------ 100
Query: 121 HISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPV 180
AVA W LP + +W HPEG DSTI HR +HPV
Sbjct: 101 ------AVAAAPWW---LPVKG-----------------ANWRHPEGPDSTILHRPDHPV 134
Query: 181 VHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFP 240
+HVSWNDAVAYCTW G RLPTEAEWEY CRGGL NRLFPWGN L P+G+H AN+WQGEFP
Sbjct: 135 LHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFP 194
Query: 241 TNNTAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTD 300
NT DG+ TAPV ++ N +GLYN+VGN WEWT+DWW VHH + NPKGP +G D
Sbjct: 195 VTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKD 254
Query: 301 KVKKGGSYLCNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGPT 346
+VKKGGSY+ + Y YR+RCAARSQNTPDSSA NLGFRCAAD+ PT
Sbjct: 255 RVKKGGSYMXHRSYXYRYRCAARSQNTPDSSASNLGFRCAADRLPT 300
>pdb|2AFY|X Chain X, Formylglycine Generating Enzyme C341s Mutant
Length = 286
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/334 (55%), Positives = 223/334 (66%), Gaps = 50/334 (14%)
Query: 12 YKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVT 71
+ MV +P F MGT+ P + +DGE P+R VT+DAFY+D +EVSNT+F++FV++TGY+T
Sbjct: 3 HSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLT 62
Query: 72 EAEKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYC 131
EAEKFGD+FVFE +LSE+ + I Q AVA
Sbjct: 63 EAEKFGDSFVFEGMLSEQVKTNIQQ------------------------------AVAAA 92
Query: 132 TWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHVSWNDAVAY 191
W LP + +W HPEG DSTI HR +HPV+HVSWNDAVAY
Sbjct: 93 PWW---LPVKG-----------------ANWRHPEGPDSTILHRPDHPVLHVSWNDAVAY 132
Query: 192 CTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLS 251
CTW G RLPTEAEWEY CRGGL NRLFPWGN L P+G+H AN+WQGEFP NT DG+
Sbjct: 133 CTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFQG 192
Query: 252 TAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTDKVKKGGSYLCN 311
TAPV ++ N +GLYN+VGN WEWT+DWW VHH + NPKGP +G D+VKKGGSY+ +
Sbjct: 193 TAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMXH 252
Query: 312 EQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGP 345
Y YR+RCAARSQNTPDSSA NLGFRCAAD+ P
Sbjct: 253 RSYSYRYRCAARSQNTPDSSASNLGFRCAADRLP 286
>pdb|2Q17|A Chain A, Formylglycine Generating Enzyme From Streptomyces
Coelicolor
pdb|2Q17|B Chain B, Formylglycine Generating Enzyme From Streptomyces
Coelicolor
pdb|2Q17|C Chain C, Formylglycine Generating Enzyme From Streptomyces
Coelicolor
pdb|2Q17|D Chain D, Formylglycine Generating Enzyme From Streptomyces
Coelicolor
pdb|2Q17|E Chain E, Formylglycine Generating Enzyme From Streptomyces
Coelicolor
Length = 346
Score = 267 bits (683), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 149/339 (43%), Positives = 186/339 (54%), Gaps = 53/339 (15%)
Query: 13 KDMVLLPGDTFRMGTN-KPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVT 71
+ V LPG F MG DGE P V L F++D+ V+N +F FV ATG+VT
Sbjct: 56 RGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAFVKATGHVT 115
Query: 72 EAEKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYC 131
+AE+FG + VF +++ + +
Sbjct: 116 DAERFGSSAVFHLVVAAPDADVLGSA---------------------------------- 141
Query: 132 TWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHVSWNDAVAY 191
A W RG W PEG S I R NHPVVHVSWNDA AY
Sbjct: 142 --------AGAPWWINVRGA---------HWRRPEGARSDITGRPNHPVVHVSWNDATAY 184
Query: 192 CTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLS 251
W G RLPTEAEWEY RGGL R + WG+ LTP G R N+WQG FP NTA DG+LS
Sbjct: 185 ARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVNTAEDGHLS 244
Query: 252 TAPVMSYKENKFGLYNMVGNVWEWTADWWN-VHHHPAPSYNPKGPTTGTDKVKKGGSYLC 310
TAPV SY+ N GL+N GNVWEW +DW++ ++ +P+ +P GP TG +V +GGSYLC
Sbjct: 245 TAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARVLRGGSYLC 304
Query: 311 NEQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGPTTGT 349
++ YC R+R AARS NTPDSS+GNLGFRCA D T+G+
Sbjct: 305 HDSYCNRYRVAARSSNTPDSSSGNLGFRCANDADLTSGS 343
>pdb|1Y4J|A Chain A, Crystal Structure Of The Paralogue Of The Human
Formylglycine Generating Enzyme
pdb|1Y4J|B Chain B, Crystal Structure Of The Paralogue Of The Human
Formylglycine Generating Enzyme
Length = 284
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 173/337 (51%), Gaps = 70/337 (20%)
Query: 15 MVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVTEAE 74
MV L G F MGTN P +DGE P R T+ F +D V+N F++FV Y TEAE
Sbjct: 4 MVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAE 62
Query: 75 KFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTWR 134
FG +FVFE +S+E R K +Q P+ + W W
Sbjct: 63 MFGWSFVFEDFVSDELRNKATQ---------------------PMKSVLW--------W- 92
Query: 135 GARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHVSWNDAVAYCTW 194
LP E + W P G S I R+ HPV+HVSWNDA AYC W
Sbjct: 93 ---LPVEKAF-----------------WRQPAGPGSGIRERLEHPVLHVSWNDARAYCAW 132
Query: 195 RGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLSTAP 254
RG RLPTE EWE+ RGGL+ +++PWGN P +R N+WQG+FP + A DG+ +P
Sbjct: 133 RGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKGDKAEDGFHGVSP 189
Query: 255 VMSY-KENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTDKVKKGGSYL--CN 311
V ++ +N +GLY+++GNVWEWTA +P +V +G S++ +
Sbjct: 190 VNAFPAQNNYGLYDLLGNVWEWTA-------------SPYQAAEQDMRVLRGASWIDTAD 236
Query: 312 EQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGPTTG 348
+R R R NTPDS++ NLGFRCAAD G G
Sbjct: 237 GSANHRARVTTRMGNTPDSASDNLGFRCAADAGRPPG 273
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 351 KVKKGGSYL--CNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADV 393
+V +G S++ + +R R R NTPDS++ NLGFRCAAD
Sbjct: 224 RVLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAADA 268
>pdb|2Y3C|A Chain A, Treponema Denticola Variable Protein 1
Length = 294
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 30/238 (12%)
Query: 104 FEGLDSTIEHRMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWL 163
F G + E + PV +++W A+A+C +L E + G
Sbjct: 83 FNGSPAVGETQGKRPVENVNWYQAIAFCNKLSIKLNLEPCYTVNVGG------------- 129
Query: 164 HPEGIDSTIEHRMNHPVVHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGNN 223
+P + + + W+ A +G RLPTEAEWE+ +GG +++ W
Sbjct: 130 NPVDF-AALSFDQIPDSNNADWDKAELDINKKGFRLPTEAEWEWAAKGGTDDK---WSGT 185
Query: 224 LTPRGEHRANVWQGEFPTNNTAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTADW-WNV 282
T E + W G +N+ + T V K N +GLY++ GNV EW DW ++
Sbjct: 186 NT-EAELKNYAWYG----SNSGS----KTHEVKKKKPNWYGLYDIAGNVAEWCWDWRADI 236
Query: 283 HHHPAPSYNPKGPTTGTDKVKKGGSYLCNEQYCYRHRCAARSQNTPDSSAGNLGFRCA 340
H + + GP +G+ +V +GGS+ + YC R +P +LGFR A
Sbjct: 237 HTGDSFPQDYPGPASGSGRVLRGGSWAGSADYC---AVGERVNISPGVRXSDLGFRLA 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,238,242
Number of Sequences: 62578
Number of extensions: 661065
Number of successful extensions: 1696
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1651
Number of HSP's gapped (non-prelim): 28
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)